Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58791.t1 | XP_024632961.1 | 85.3 | 536 | 55 | 2 | 1 | 512 | 1 | 536 | 3.10E-267 | 930.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58791.t1 | Q9SZL8 | 28.3 | 470 | 314 | 6 | 32 | 499 | 70 | 518 | 1.5e-55 | 218.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58791.t1 | D3YBB9 | 79.3 | 512 | 106 | 0 | 1 | 512 | 49 | 560 | 9.5e-242 | 845.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58791.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58791.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 545 |
| MS.gene58791.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 1.18e-174 | 493 |
| MS.gene58791.t1 | MTR_8g446020 | 73.559 | 295 | 39 | 1 | 1 | 295 | 1 | 256 | 9.58e-154 | 439 |
| MS.gene58791.t1 | MTR_6g090505 | 83.966 | 237 | 38 | 0 | 65 | 301 | 1 | 237 | 1.04e-146 | 426 |
| MS.gene58791.t1 | MTR_6g090505 | 66.667 | 102 | 7 | 2 | 396 | 495 | 230 | 306 | 3.96e-34 | 132 |
| MS.gene58791.t1 | MTR_2g014100 | 82.041 | 245 | 35 | 1 | 1 | 236 | 1 | 245 | 1.56e-143 | 413 |
| MS.gene58791.t1 | MTR_0337s0040 | 71.923 | 260 | 33 | 2 | 1 | 259 | 1 | 221 | 8.10e-126 | 367 |
| MS.gene58791.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 8.23e-120 | 351 |
| MS.gene58791.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 1.92e-119 | 350 |
| MS.gene58791.t1 | MTR_5g071590 | 73.333 | 180 | 35 | 2 | 1 | 167 | 1 | 180 | 7.04e-91 | 276 |
| MS.gene58791.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 2.06e-89 | 271 |
| MS.gene58791.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 82 | 233 | 9 | 160 | 1.45e-88 | 269 |
| MS.gene58791.t1 | MTR_1281s0010 | 80.734 | 109 | 21 | 0 | 19 | 127 | 1 | 109 | 7.46e-57 | 185 |
| MS.gene58791.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.67e-39 | 147 |
| MS.gene58791.t1 | MTR_0337s0060 | 92.424 | 66 | 5 | 0 | 447 | 512 | 21 | 86 | 6.98e-35 | 131 |
| MS.gene58791.t1 | MTR_4g008820 | 82.500 | 80 | 13 | 1 | 1 | 79 | 125 | 204 | 1.02e-30 | 127 |
| MS.gene58791.t1 | MTR_8g046060 | 76.136 | 88 | 12 | 2 | 1 | 79 | 91 | 178 | 2.80e-30 | 118 |
| MS.gene58791.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 1.11e-19 | 92.8 |
| MS.gene58791.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 7.08e-15 | 77.4 |
| MS.gene58791.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.35e-13 | 66.6 |
| MS.gene58791.t1 | MTR_4g035820 | 22.642 | 265 | 180 | 5 | 40 | 299 | 80 | 324 | 4.40e-13 | 72.4 |
| MS.gene58791.t1 | MTR_1g013060 | 29.954 | 217 | 131 | 8 | 40 | 253 | 29 | 227 | 9.67e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58791.t1 | AT4G38180 | 28.632 | 475 | 306 | 7 | 32 | 499 | 70 | 518 | 3.11e-61 | 215 |
| MS.gene58791.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 4.07e-42 | 161 |
| MS.gene58791.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 4.07e-42 | 161 |
| MS.gene58791.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 4.07e-42 | 161 |
| MS.gene58791.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 6.87e-41 | 157 |
| MS.gene58791.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 6.87e-41 | 157 |
| MS.gene58791.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 6.87e-41 | 157 |
| MS.gene58791.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 6.87e-41 | 157 |
| MS.gene58791.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 6.87e-41 | 157 |
| MS.gene58791.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 2.44e-40 | 155 |
| MS.gene58791.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 4.23e-40 | 155 |
| MS.gene58791.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 4.32e-40 | 155 |
| MS.gene58791.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 4.32e-40 | 155 |
| MS.gene58791.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 1.07e-38 | 151 |
| MS.gene58791.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 1.07e-38 | 151 |
| MS.gene58791.t1 | AT2G27110 | 29.758 | 289 | 195 | 3 | 213 | 499 | 36 | 318 | 7.31e-38 | 148 |
| MS.gene58791.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 7.75e-38 | 148 |
| MS.gene58791.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 7.75e-38 | 148 |
| MS.gene58791.t1 | AT4G38170 | 28.261 | 276 | 187 | 4 | 235 | 507 | 24 | 291 | 1.35e-37 | 145 |
| MS.gene58791.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 3.23e-36 | 143 |
| MS.gene58791.t1 | AT1G10240 | 26.067 | 445 | 291 | 13 | 49 | 482 | 62 | 479 | 3.84e-36 | 143 |
| MS.gene58791.t1 | AT1G10240 | 26.067 | 445 | 291 | 13 | 49 | 482 | 62 | 479 | 3.84e-36 | 143 |
| MS.gene58791.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 3.89e-36 | 143 |
| MS.gene58791.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 3.89e-36 | 143 |
| MS.gene58791.t1 | AT3G22170 | 22.129 | 479 | 332 | 9 | 34 | 507 | 69 | 511 | 4.19e-34 | 137 |
| MS.gene58791.t1 | AT3G22170 | 22.129 | 479 | 332 | 9 | 34 | 507 | 69 | 511 | 4.19e-34 | 137 |
| MS.gene58791.t1 | AT1G80010 | 25.373 | 469 | 299 | 15 | 41 | 493 | 101 | 534 | 8.62e-32 | 130 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 53 | 434 | 1.40e-31 | 129 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 53 | 434 | 1.73e-31 | 129 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 53 | 434 | 1.73e-31 | 129 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 53 | 434 | 2.07e-31 | 129 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 53 | 434 | 2.07e-31 | 129 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 53 | 434 | 2.07e-31 | 129 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 12 | 393 | 2.14e-31 | 129 |
| MS.gene58791.t1 | AT2G32250 | 24.390 | 451 | 267 | 10 | 50 | 495 | 12 | 393 | 2.17e-31 | 129 |
| MS.gene58791.t1 | AT1G52520 | 23.222 | 478 | 324 | 11 | 41 | 512 | 91 | 531 | 1.39e-28 | 120 |
| MS.gene58791.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 1.89e-27 | 117 |
| MS.gene58791.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 2.27e-27 | 117 |
| MS.gene58791.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 2.28e-27 | 117 |
| MS.gene58791.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 2.28e-27 | 117 |
| MS.gene58791.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 177 | 440 | 2.48e-27 | 117 |
| MS.gene58791.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 3.44e-27 | 116 |
| MS.gene58791.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 3.44e-27 | 116 |
| MS.gene58791.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 1.40e-16 | 83.2 |
| MS.gene58791.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 1.44e-16 | 83.2 |
Find 73 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 6.3:+74054487 | MS.gene58791:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 6.3:+74054178 | MS.gene58791:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6.3:+74054445 | MS.gene58791:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 6.3:+74053394 | MS.gene58791:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 6.3:+74053897 | MS.gene58791:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 6.3:+74053930 | MS.gene58791:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 6.3:-74054024 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 6.3:+74054219 | MS.gene58791:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 6.3:-74054042 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6.3:-74053444 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 6.3:+74054319 | MS.gene58791:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 6.3:+74053451 | MS.gene58791:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6.3:+74053443 | MS.gene58791:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 6.3:+74054318 | MS.gene58791:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 6.3:-74052914 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 6.3:+74052685 | MS.gene58791:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 6.3:+74052756 | MS.gene58791:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6.3:+74053091 | MS.gene58791:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 6.3:+74052973 | MS.gene58791:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 6.3:-74054035 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6.3:+74052956 | MS.gene58791:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 6.3:+74052839 | MS.gene58791:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 6.3:+74053121 | MS.gene58791:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 6.3:+74052610 | MS.gene58791:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 6.3:+74054109 | MS.gene58791:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 6.3:+74054273 | MS.gene58791:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 6.3:+74052805 | MS.gene58791:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 6.3:+74053166 | MS.gene58791:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 6.3:-74052950 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 6.3:+74052743 | MS.gene58791:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 6.3:+74053234 | MS.gene58791:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 6.3:-74053061 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 6.3:+74052799 | MS.gene58791:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 6.3:-74053910 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 6.3:+74054220 | MS.gene58791:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 6.3:+74053247 | MS.gene58791:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6.3:+74054459 | MS.gene58791:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 6.3:-74054539 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 6.3:+74053153 | MS.gene58791:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 6.3:-74053339 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 6.3:-74053049 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 6.3:+74054306 | MS.gene58791:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 6.3:-74053205 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 6.3:+74054478 | MS.gene58791:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 6.3:+74054324 | MS.gene58791:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 6.3:+74053009 | MS.gene58791:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 6.3:-74054427 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 6.3:+74052850 | MS.gene58791:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 6.3:-74054422 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6.3:+74052851 | MS.gene58791:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 6.3:+74052675 | MS.gene58791:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 6.3:-74054055 | None:intergenic |
| ATTGATGCGGATAGTTCTCA+AGG | 0.558413 | 6.3:+74052647 | MS.gene58791:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 6.3:+74053301 | MS.gene58791:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 6.3:+74052634 | MS.gene58791:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 6.3:+74053169 | MS.gene58791:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 6.3:+74053008 | MS.gene58791:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 6.3:-74054540 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 6.3:+74052599 | MS.gene58791:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 6.3:+74053160 | MS.gene58791:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 6.3:+74054041 | MS.gene58791:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 6.3:+74053240 | MS.gene58791:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 6.3:+74053154 | MS.gene58791:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 6.3:+74053243 | MS.gene58791:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 6.3:+74054537 | MS.gene58791:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 6.3:-74052899 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 6.3:-74054275 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 6.3:+74053174 | MS.gene58791:CDS |
| AAAATCCACGAAGAAAAGCA+TGG | 0.622727 | 6.3:-74054394 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 6.3:+74054110 | MS.gene58791:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6.3:+74054460 | MS.gene58791:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 6.3:-74055010 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 6.3:+74054037 | MS.gene58791:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | + | chr6.3:74053008-74053027 | MS.gene58791:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr6.3:74052799-74052818 | MS.gene58791:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | + | chr6.3:74053009-74053028 | MS.gene58791:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr6.3:74052743-74052762 | MS.gene58791:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr6.3:74053626-74053645 | MS.gene58791:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr6.3:74054248-74054267 | MS.gene58791:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr6.3:74053598-74053617 | MS.gene58791:intron | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr6.3:74054086-74054105 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr6.3:74052805-74052824 | MS.gene58791:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr6.3:74053443-74053462 | MS.gene58791:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr6.3:74053469-74053488 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr6.3:74054619-74054638 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | + | chr6.3:74052675-74052694 | MS.gene58791:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr6.3:74054445-74054464 | MS.gene58791:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr6.3:74052634-74052653 | MS.gene58791:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr6.3:74053516-74053535 | MS.gene58791:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr6.3:74054584-74054603 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr6.3:74054619-74054638 | MS.gene58791:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr6.3:74054178-74054197 | MS.gene58791:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr6.3:74053618-74053637 | MS.gene58791:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr6.3:74053874-74053893 | MS.gene58791:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr6.3:74054720-74054739 | MS.gene58791:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr6.3:74052795-74052814 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr6.3:74053625-74053644 | MS.gene58791:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr6.3:74053121-74053140 | MS.gene58791:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr6.3:74054252-74054271 | MS.gene58791:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr6.3:74054721-74054740 | MS.gene58791:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr6.3:74053689-74053708 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr6.3:74052851-74052870 | MS.gene58791:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr6.3:74053451-74053470 | MS.gene58791:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr6.3:74054219-74054238 | MS.gene58791:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr6.3:74053154-74053173 | MS.gene58791:CDS | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | + | chr6.3:74052599-74052618 | MS.gene58791:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr6.3:74054220-74054239 | MS.gene58791:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr6.3:74053913-74053932 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr6.3:74054792-74054811 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr6.3:74053394-74053413 | MS.gene58791:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr6.3:74052839-74052858 | MS.gene58791:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr6.3:74054624-74054643 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr6.3:74053555-74053574 | MS.gene58791:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr6.3:74054622-74054641 | MS.gene58791:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr6.3:74054134-74054153 | MS.gene58791:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr6.3:74054793-74054812 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr6.3:74053447-74053466 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr6.3:74052940-74052959 | MS.gene58791:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr6.3:74052685-74052704 | MS.gene58791:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr6.3:74054430-74054449 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr6.3:74052850-74052869 | MS.gene58791:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr6.3:74053322-74053341 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr6.3:74054564-74054583 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr6.3:74053208-74053227 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr6.3:74053833-74053852 | MS.gene58791:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr6.3:74053052-74053071 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr6.3:74052973-74052992 | MS.gene58791:CDS | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr6.3:74054679-74054698 | MS.gene58791:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr6.3:74053198-74053217 | MS.gene58791:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr6.3:74054027-74054046 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr6.3:74054077-74054096 | MS.gene58791:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr6.3:74054904-74054923 | MS.gene58791:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr6.3:74054804-74054823 | MS.gene58791:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr6.3:74053530-74053549 | MS.gene58791:intron | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr6.3:74054805-74054824 | MS.gene58791:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr6.3:74054901-74054920 | MS.gene58791:intron | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | + | chr6.3:74053356-74053375 | MS.gene58791:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | + | chr6.3:74053357-74053376 | MS.gene58791:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr6.3:74054969-74054988 | MS.gene58791:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr6.3:74054089-74054108 | MS.gene58791:CDS | 30.0% |
| AAAATCCACGAAGAAAAGCA+TGG | - | chr6.3:74054397-74054416 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr6.3:74054459-74054478 | MS.gene58791:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr6.3:74052756-74052775 | MS.gene58791:CDS | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | - | chr6.3:74053656-74053675 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr6.3:74054460-74054479 | MS.gene58791:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr6.3:74053091-74053110 | MS.gene58791:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr6.3:74054794-74054813 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr6.3:74052939-74052958 | MS.gene58791:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | + | chr6.3:74054306-74054325 | MS.gene58791:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr6.3:74052934-74052953 | MS.gene58791:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr6.3:74053153-74053172 | MS.gene58791:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr6.3:74052876-74052895 | MS.gene58791:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr6.3:74053234-74053253 | MS.gene58791:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | - | chr6.3:74053665-74053684 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr6.3:74052917-74052936 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr6.3:74053930-74053949 | MS.gene58791:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr6.3:74054742-74054761 | MS.gene58791:intron | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr6.3:74053536-74053555 | MS.gene58791:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr6.3:74054262-74054281 | MS.gene58791:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr6.3:74054102-74054121 | MS.gene58791:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr6.3:74054971-74054990 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr6.3:74054319-74054338 | MS.gene58791:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr6.3:74054911-74054930 | MS.gene58791:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr6.3:74053973-74053992 | MS.gene58791:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr6.3:74054972-74054991 | MS.gene58791:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr6.3:74054425-74054444 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr6.3:74053783-74053802 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr6.3:74052610-74052629 | MS.gene58791:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr6.3:74054636-74054655 | MS.gene58791:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr6.3:74054868-74054887 | MS.gene58791:intron | 40.0% | |
| ATTGATGCGGATAGTTCTCA+AGG | + | chr6.3:74052647-74052666 | MS.gene58791:CDS | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | + | chr6.3:74053669-74053688 | MS.gene58791:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr6.3:74054867-74054886 | MS.gene58791:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr6.3:74054635-74054654 | MS.gene58791:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr6.3:74054037-74054056 | MS.gene58791:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr6.3:74053779-74053798 | MS.gene58791:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | - | chr6.3:74053368-74053387 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr6.3:74054038-74054057 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | + | chr6.3:74053897-74053916 | MS.gene58791:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr6.3:74054774-74054793 | MS.gene58791:intron | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr6.3:74054487-74054506 | MS.gene58791:CDS | 40.0% |
| ! | TCTTTCCATGCTTTTCTTCG+TGG | + | chr6.3:74054389-74054408 | MS.gene58791:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr6.3:74054914-74054933 | MS.gene58791:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr6.3:74054318-74054337 | MS.gene58791:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr6.3:74052890-74052909 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr6.3:74053160-74053179 | MS.gene58791:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr6.3:74053243-74053262 | MS.gene58791:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr6.3:74053301-74053320 | MS.gene58791:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr6.3:74052902-74052921 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | - | chr6.3:74054278-74054297 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr6.3:74054537-74054556 | MS.gene58791:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr6.3:74054889-74054908 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | - | chr6.3:74053064-74053083 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr6.3:74052944-74052963 | MS.gene58791:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr6.3:74053240-74053259 | MS.gene58791:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr6.3:74054478-74054497 | MS.gene58791:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr6.3:74054787-74054806 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr6.3:74054869-74054888 | MS.gene58791:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr6.3:74053342-74053361 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr6.3:74052953-74052972 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr6.3:74054341-74054360 | MS.gene58791:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr6.3:74054324-74054343 | MS.gene58791:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr6.3:74052956-74052975 | MS.gene58791:CDS | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr6.3:74053364-74053383 | MS.gene58791:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr6.3:74054045-74054064 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr6.3:74054041-74054060 | MS.gene58791:CDS | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | + | chr6.3:74054824-74054843 | MS.gene58791:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr6.3:74054542-74054561 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | + | chr6.3:74054273-74054292 | MS.gene58791:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | + | chr6.3:74054825-74054844 | MS.gene58791:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr6.3:74054110-74054129 | MS.gene58791:CDS | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | + | chr6.3:74053645-74053664 | MS.gene58791:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr6.3:74054109-74054128 | MS.gene58791:CDS | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr6.3:74053166-74053185 | MS.gene58791:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr6.3:74054058-74054077 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr6.3:74054543-74054562 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr6.3:74053247-74053266 | MS.gene58791:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr6.3:74053169-74053188 | MS.gene58791:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr6.3:74053174-74053193 | MS.gene58791:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 74052590 | 74055028 | 74052590 | ID=MS.gene58791 |
| chr6.3 | mRNA | 74052590 | 74055028 | 74052590 | ID=MS.gene58791.t1;Parent=MS.gene58791 |
| chr6.3 | exon | 74052590 | 74053472 | 74052590 | ID=MS.gene58791.t1.exon1;Parent=MS.gene58791.t1 |
| chr6.3 | CDS | 74052590 | 74053472 | 74052590 | ID=cds.MS.gene58791.t1;Parent=MS.gene58791.t1 |
| chr6.3 | exon | 74053907 | 74054558 | 74053907 | ID=MS.gene58791.t1.exon2;Parent=MS.gene58791.t1 |
| chr6.3 | CDS | 74053907 | 74054558 | 74053907 | ID=cds.MS.gene58791.t1;Parent=MS.gene58791.t1 |
| chr6.3 | exon | 74054989 | 74055028 | 74054989 | ID=MS.gene58791.t1.exon3;Parent=MS.gene58791.t1 |
| chr6.3 | CDS | 74054989 | 74055028 | 74054989 | ID=cds.MS.gene58791.t1;Parent=MS.gene58791.t1 |
| Gene Sequence |
| Protein sequence |
