Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58839.t1 | XP_003624928.1 | 93.7 | 444 | 28 | 0 | 1 | 444 | 4 | 447 | 4.30E-225 | 790.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58839.t1 | Q9FHK9 | 46.6 | 464 | 195 | 10 | 3 | 444 | 4 | 436 | 6.5e-89 | 329.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58839.t1 | G7L5V3 | 93.7 | 444 | 28 | 0 | 1 | 444 | 1 | 444 | 3.1e-225 | 790.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58839.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58839.t1 | MTR_7g089140 | 97.748 | 444 | 10 | 0 | 1 | 444 | 4 | 447 | 0.0 | 898 |
| MS.gene58839.t1 | MTR_7g089140 | 97.748 | 444 | 10 | 0 | 1 | 444 | 1 | 444 | 0.0 | 897 |
| MS.gene58839.t1 | MTR_7g089140 | 97.070 | 273 | 8 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| MS.gene58839.t1 | MTR_7g089140 | 97.070 | 273 | 8 | 0 | 1 | 273 | 4 | 276 | 0.0 | 548 |
| MS.gene58839.t1 | MTR_3g095380 | 33.175 | 211 | 120 | 6 | 6 | 208 | 3 | 200 | 3.66e-23 | 99.8 |
| MS.gene58839.t1 | MTR_3g095380 | 33.175 | 211 | 120 | 6 | 6 | 208 | 3 | 200 | 8.36e-23 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58839.t1 | AT5G05140 | 46.983 | 464 | 193 | 11 | 3 | 444 | 4 | 436 | 1.53e-121 | 361 |
| MS.gene58839.t1 | AT3G10820 | 42.032 | 433 | 203 | 8 | 3 | 434 | 7 | 392 | 2.77e-89 | 277 |
| MS.gene58839.t1 | AT3G10820 | 42.032 | 433 | 203 | 8 | 3 | 434 | 7 | 392 | 1.78e-86 | 275 |
| MS.gene58839.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 5.45e-22 | 97.1 |
| MS.gene58839.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 5.45e-22 | 97.1 |
| MS.gene58839.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 5.45e-22 | 97.1 |
| MS.gene58839.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 5.45e-22 | 97.1 |
| MS.gene58839.t1 | AT5G09850 | 30.769 | 221 | 113 | 5 | 6 | 208 | 3 | 201 | 1.89e-21 | 95.5 |
Find 113 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGCTGTAATTGCTAAT+AGG | 0.172892 | 7.3:-20322178 | None:intergenic |
| CCATTGCCGATTGTGATTTC+CGG | 0.189148 | 7.3:-20324386 | None:intergenic |
| TTCAACAACAGATGGATTTC+TGG | 0.196234 | 7.3:-20323329 | None:intergenic |
| TGAGCATTGAGAGGCCTCTT+AGG | 0.252560 | 7.3:-20323980 | None:intergenic |
| CATTGCCGATTGTGATTTCC+GGG | 0.275321 | 7.3:-20324385 | None:intergenic |
| TCAGCAGCCATTGGTTTATT+AGG | 0.298615 | 7.3:-20323866 | None:intergenic |
| AAACCAATGGCTGCTGATAC+TGG | 0.331234 | 7.3:+20323872 | MS.gene58839:CDS |
| CCTATTAGCAATTACAGCTT+TGG | 0.340233 | 7.3:+20322178 | MS.gene58839:CDS |
| CAAAGCTGTAATTGCTAATA+GGG | 0.344245 | 7.3:-20322177 | None:intergenic |
| CTCCTAGACTTAAACTCCTT+TGG | 0.357491 | 7.3:-20321965 | None:intergenic |
| GCTTTCTTTGTTGCCCCAAC+TGG | 0.358676 | 7.3:+20323403 | MS.gene58839:CDS |
| AGTTATCAACAAGCTGAAAA+TGG | 0.359783 | 7.3:+20324150 | MS.gene58839:CDS |
| TTGTATTGTCCTTTGCCTCT+TGG | 0.365164 | 7.3:-20324302 | None:intergenic |
| AGGACTCCCGTCACCTCCTT+TGG | 0.378418 | 7.3:+20323372 | MS.gene58839:CDS |
| TTACTTTCGTTCATCGAATT+CGG | 0.381995 | 7.3:+20321892 | MS.gene58839:CDS |
| AATTTGCAGTCAACTGAGAT+TGG | 0.383050 | 7.3:+20322673 | MS.gene58839:intron |
| CGCTGAATGTTCGAGTTTAG+CGG | 0.385713 | 7.3:-20323905 | None:intergenic |
| CTCTTGAAGTCTCCGCTTAG+TGG | 0.392632 | 7.3:-20324127 | None:intergenic |
| CGTTGGACAGACCCTTGCTT+TGG | 0.393563 | 7.3:-20324346 | None:intergenic |
| TGTTATGCTGAATCGTTGTA+AGG | 0.399819 | 7.3:+20322015 | MS.gene58839:CDS |
| GTGCTGACTCTTGTTGTCCT+TGG | 0.405815 | 7.3:-20323816 | None:intergenic |
| TTGTCACGGTTCTTGTTGAA+TGG | 0.419455 | 7.3:-20323716 | None:intergenic |
| GATTGCAGTAGGGAAGAAAA+TGG | 0.423504 | 7.3:+20322139 | MS.gene58839:CDS |
| GTCTAAGTGTTCAGATGATT+CGG | 0.425620 | 7.3:+20324092 | MS.gene58839:CDS |
| CGGAAATCACAATCGGCAAT+GGG | 0.431117 | 7.3:+20324387 | MS.gene58839:CDS |
| AGAGTTCAATTGTACCAGTT+GGG | 0.432169 | 7.3:-20323417 | None:intergenic |
| AGCTCTTGGCTCTCAAACTA+AGG | 0.432229 | 7.3:+20323751 | MS.gene58839:CDS |
| TTGGGATTGAAGATGAAGTC+AGG | 0.434760 | 7.3:+20321848 | None:intergenic |
| CCGTCACCTCCTTTGGATGA+AGG | 0.458747 | 7.3:+20323379 | MS.gene58839:CDS |
| TGAGAGTTCGTGCTAGTTGA+CGG | 0.465786 | 7.3:-20322738 | None:intergenic |
| CTGGCTTTCTTCCGTTGTCA+CGG | 0.466235 | 7.3:-20323730 | None:intergenic |
| CGTCACCTCCTTTGGATGAA+GGG | 0.466548 | 7.3:+20323380 | MS.gene58839:CDS |
| AACGGAAGAAAGCCAGCTCT+TGG | 0.469024 | 7.3:+20323737 | MS.gene58839:CDS |
| ATGTTTGTAGCTTCAGAAGA+AGG | 0.472561 | 7.3:+20323295 | MS.gene58839:intron |
| TCATCACCATTATCATCATC+AGG | 0.473283 | 7.3:-20322064 | None:intergenic |
| GTTTGAAATGTGTATTCCGT+TGG | 0.475671 | 7.3:-20324363 | None:intergenic |
| GAGTTTAAGTCTAGGAGAGA+TGG | 0.491402 | 7.3:+20321971 | MS.gene58839:CDS |
| ACAGATGGATTTCTGGAATC+CGG | 0.496893 | 7.3:-20323322 | None:intergenic |
| GAGCATTGAGAGGCCTCTTA+GGG | 0.497467 | 7.3:-20323979 | None:intergenic |
| GCAAAGGACAATACAAGTAA+TGG | 0.500794 | 7.3:+20324309 | MS.gene58839:CDS |
| CCGGAAATCACAATCGGCAA+TGG | 0.503234 | 7.3:+20324386 | MS.gene58839:CDS |
| TTAGTTTGAGAGCCAAGAGC+TGG | 0.503363 | 7.3:-20323749 | None:intergenic |
| GAAAATGAAGAAGAGGAAGA+AGG | 0.503793 | 7.3:+20323349 | MS.gene58839:CDS |
| CAAGAGAAGTTCTGTTAGAG+AGG | 0.509666 | 7.3:+20322093 | MS.gene58839:CDS |
| AAGATTATACCTCATCTTCA+CGG | 0.513302 | 7.3:-20322285 | None:intergenic |
| TGCTGCTTCTGATTGTCCAA+AGG | 0.514908 | 7.3:+20321949 | MS.gene58839:CDS |
| GCTGGTCAATGCGTGGGTGA+AGG | 0.515961 | 7.3:+20323145 | MS.gene58839:CDS |
| AGAGCAAGGTGGATTGCAGT+AGG | 0.520399 | 7.3:+20322128 | MS.gene58839:CDS |
| GCAATCACAACTTGCTGCTG+AGG | 0.525782 | 7.3:+20322234 | MS.gene58839:CDS |
| CGGCCAGTATCAGCAGCCAT+TGG | 0.526346 | 7.3:-20323875 | None:intergenic |
| CACAATCGGCAATGGGGCAA+CGG | 0.528995 | 7.3:+20324394 | MS.gene58839:CDS |
| CTTGTTGTCCTTGGCAGTGA+CGG | 0.530853 | 7.3:-20323807 | None:intergenic |
| ATAAATGATCTTCCAAAGCA+AGG | 0.538473 | 7.3:+20324334 | MS.gene58839:CDS |
| GTCACCTCCTTTGGATGAAG+GGG | 0.541178 | 7.3:+20323381 | MS.gene58839:CDS |
| GGGTGCTAGCAAAGAGAGCA+AGG | 0.546467 | 7.3:+20322114 | MS.gene58839:CDS |
| AAAACAGTACTGTCCCTAAG+AGG | 0.547218 | 7.3:+20323966 | MS.gene58839:CDS |
| TAATTGCAGCCAAGAGGCAA+AGG | 0.551496 | 7.3:+20324293 | MS.gene58839:intron |
| CTGCTGATACTGGCCGTGCA+AGG | 0.551930 | 7.3:+20323882 | MS.gene58839:CDS |
| TCAAACCCGGAAATCACAAT+CGG | 0.553682 | 7.3:+20324380 | MS.gene58839:CDS |
| TGTAAAGTTCTTCGATGGCA+TGG | 0.555348 | 7.3:+20323549 | MS.gene58839:intron |
| TGTTGTTGAAAATGAAGAAG+AGG | 0.557042 | 7.3:+20323342 | MS.gene58839:CDS |
| GTGAATCATCTGAGAAAGCA+TGG | 0.558864 | 7.3:+20322703 | MS.gene58839:CDS |
| TCGAGTTTAGCGGCCTTGCA+CGG | 0.559976 | 7.3:-20323895 | None:intergenic |
| CATGTTGCTACAGTCTGACT+CGG | 0.562250 | 7.3:+20322501 | MS.gene58839:intron |
| ACGGCTGTTTCATTAGATGC+CGG | 0.562358 | 7.3:-20323788 | None:intergenic |
| TAAATGATCTTCCAAAGCAA+GGG | 0.564834 | 7.3:+20324335 | MS.gene58839:CDS |
| AGGCATCTTCGGCTCCACAT+TGG | 0.566230 | 7.3:-20323933 | None:intergenic |
| GAGAGTTCAATTGTACCAGT+TGG | 0.566913 | 7.3:-20323418 | None:intergenic |
| CCTTCATCCAAAGGAGGTGA+CGG | 0.567401 | 7.3:-20323379 | None:intergenic |
| CGGAATACACATTTCAAACC+CGG | 0.569195 | 7.3:+20324367 | MS.gene58839:CDS |
| TTCGATGGCATGGATGATGA+TGG | 0.571056 | 7.3:+20323559 | MS.gene58839:CDS |
| GAGTTCAATTGTACCAGTTG+GGG | 0.574661 | 7.3:-20323416 | None:intergenic |
| TAGGGAAGAAAATGGAGTGA+TGG | 0.575118 | 7.3:+20322147 | MS.gene58839:CDS |
| CTTCATCCAAAGGAGGTGAC+GGG | 0.575720 | 7.3:-20323378 | None:intergenic |
| TGGTACAATTGAACTCTCAC+AGG | 0.578719 | 7.3:+20323423 | MS.gene58839:CDS |
| GTTATGCTGAATCGTTGTAA+GGG | 0.581949 | 7.3:+20322016 | MS.gene58839:CDS |
| GAGCAAGGTGGATTGCAGTA+GGG | 0.582197 | 7.3:+20322129 | MS.gene58839:CDS |
| GCTCTCAAACTAAGGACAAG+AGG | 0.585924 | 7.3:+20323759 | MS.gene58839:CDS |
| AAGAAAGCCCCTTCATCCAA+AGG | 0.586587 | 7.3:-20323388 | None:intergenic |
| TTCTAGTGGATGGAAAGAGC+TGG | 0.587363 | 7.3:+20323127 | MS.gene58839:intron |
| ACATCTTGCTGAGCATTGAG+AGG | 0.588536 | 7.3:-20323989 | None:intergenic |
| CAAAGCAAGGGTCTGTCCAA+CGG | 0.592243 | 7.3:+20324347 | MS.gene58839:CDS |
| TGGGATTGAAGATGAAGTCA+GGG | 0.594781 | 7.3:+20321849 | None:intergenic |
| AATGAAGAAGAGGAAGAAGG+AGG | 0.597918 | 7.3:+20323352 | MS.gene58839:CDS |
| AAGAGAAGTTCTGTTAGAGA+GGG | 0.600208 | 7.3:+20322094 | MS.gene58839:CDS |
| ACTCTCTGTCGATCTTCTGA+AGG | 0.600474 | 7.3:+20322561 | MS.gene58839:CDS |
| GACGATGTAAAGTTCTTCGA+TGG | 0.605011 | 7.3:+20323544 | MS.gene58839:intron |
| TCTGAGAAAGCATGGATCGA+AGG | 0.607340 | 7.3:+20322711 | MS.gene58839:CDS |
| AATTATTAATTGCAGCCAAG+AGG | 0.608124 | 7.3:+20324287 | MS.gene58839:intron |
| TCAACAACCACACCTGTCGC+AGG | 0.609609 | 7.3:+20323170 | MS.gene58839:CDS |
| TGAAACAGCCGTCACTGCCA+AGG | 0.610149 | 7.3:+20323799 | MS.gene58839:CDS |
| GCAGTCAACTGAGATTGGAA+AGG | 0.610845 | 7.3:+20322678 | MS.gene58839:intron |
| TGCTGTTTGAGTCTCTGAGG+AGG | 0.611179 | 7.3:+20322524 | MS.gene58839:CDS |
| CATTCAGCGAAAAGCCAATG+TGG | 0.612860 | 7.3:+20323919 | MS.gene58839:CDS |
| TCTCAATAACCGTGAAGATG+AGG | 0.613333 | 7.3:+20322276 | MS.gene58839:CDS |
| AATTCTACCTGCGACAGGTG+TGG | 0.614711 | 7.3:-20323177 | None:intergenic |
| CAGGGTCACTTGATCAGTGG+AGG | 0.617583 | 7.3:+20321867 | MS.gene58839:CDS |
| TTCAACAAGAACCGTGACAA+CGG | 0.624350 | 7.3:+20323719 | MS.gene58839:CDS |
| GGAAAGAGCTGGTCAATGCG+TGG | 0.625905 | 7.3:+20323138 | MS.gene58839:CDS |
| GTCCAAAGGAGTTTAAGTCT+AGG | 0.627009 | 7.3:+20321963 | MS.gene58839:CDS |
| TCTGTGCCTGATGATGATAA+TGG | 0.629006 | 7.3:+20322058 | MS.gene58839:CDS |
| CGGTGCTGTTTGAGTCTCTG+AGG | 0.632670 | 7.3:+20322521 | MS.gene58839:CDS |
| GAAAGAGCTGGTCAATGCGT+GGG | 0.636719 | 7.3:+20323139 | MS.gene58839:CDS |
| GGTGAGGCCTAATAAACCAA+TGG | 0.639487 | 7.3:+20323859 | MS.gene58839:CDS |
| TCGTTGTAAGGGGTGTGAGA+AGG | 0.640457 | 7.3:+20322027 | MS.gene58839:CDS |
| AAGCAGCAACAACAATTGCA+TGG | 0.641026 | 7.3:-20321934 | None:intergenic |
| AGTCAGGGTCACTTGATCAG+TGG | 0.646882 | 7.3:+20321864 | MS.gene58839:CDS |
| AGCTTCAGAAGAAGGCACAC+CGG | 0.647483 | 7.3:+20323303 | MS.gene58839:intron |
| TTATGCTGAATCGTTGTAAG+GGG | 0.662020 | 7.3:+20322017 | MS.gene58839:CDS |
| AAAGCCCCTTCATCCAAAGG+AGG | 0.683333 | 7.3:-20323385 | None:intergenic |
| GGAAATCACAATCGGCAATG+GGG | 0.692012 | 7.3:+20324388 | MS.gene58839:CDS |
| CTAAGCTTGAAGCCACTAAG+CGG | 0.697672 | 7.3:+20324115 | MS.gene58839:CDS |
| TGCTAGCAAAGAGAGCAAGG+TGG | 0.724881 | 7.3:+20322117 | MS.gene58839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACAAAATTAATTCATGT+TGG | + | chr7.3:20323258-20323277 | MS.gene58839:intron | 15.0% |
| !!! | TTAAATTGATGATTGTAAAT+GGG | + | chr7.3:20323662-20323681 | MS.gene58839:intron | 15.0% |
| !! | AAAATGGTTCAAATTAACTA+AGG | - | chr7.3:20322930-20322949 | None:intergenic | 20.0% |
| !! | AAATGGTTCAAATTAACTAA+GGG | - | chr7.3:20322929-20322948 | None:intergenic | 20.0% |
| !! | GATATGAATCAAAACAATAA+CGG | - | chr7.3:20323018-20323037 | None:intergenic | 20.0% |
| !! | GTATATATGAAACTGAATTT+GGG | + | chr7.3:20323496-20323515 | MS.gene58839:intron | 20.0% |
| !! | TGTATATATGAAACTGAATT+TGG | + | chr7.3:20323495-20323514 | MS.gene58839:intron | 20.0% |
| !! | TTCTCAAACTTATATTTCAA+AGG | + | chr7.3:20323471-20323490 | MS.gene58839:intron | 20.0% |
| !! | TTGAAATATAAGTTTGAGAA+TGG | - | chr7.3:20323471-20323490 | None:intergenic | 20.0% |
| !!! | AGTATGATTTAGTTTTTTCA+TGG | + | chr7.3:20322764-20322783 | MS.gene58839:intron | 20.0% |
| !!! | ATCTGTTAAATGTTTTCAAT+TGG | + | chr7.3:20323060-20323079 | MS.gene58839:intron | 20.0% |
| !!! | CTTAAATTGATGATTGTAAA+TGG | + | chr7.3:20323661-20323680 | MS.gene58839:intron | 20.0% |
| !!! | TAAATTGATGATTGTAAATG+GGG | + | chr7.3:20323663-20323682 | MS.gene58839:intron | 20.0% |
| !!! | TAATCTTTTCTAATTTCTAG+TGG | + | chr7.3:20323113-20323132 | MS.gene58839:intron | 20.0% |
| !!! | TGTTTTGATATGGTTTTTTT+TGG | + | chr7.3:20322406-20322425 | MS.gene58839:intron | 20.0% |
| ! | ATAAGTTTGAGAATGGAAAA+AGG | - | chr7.3:20323464-20323483 | None:intergenic | 25.0% |
| !! | AACAATCTTAAAAAAAGCAC+TGG | - | chr7.3:20322637-20322656 | None:intergenic | 25.0% |
| !! | GCATAAATTTTGTAAGTTTG+TGG | + | chr7.3:20324037-20324056 | MS.gene58839:intron | 25.0% |
| !! | TTTTATCTACCTTATTAGTG+TGG | + | chr7.3:20323200-20323219 | MS.gene58839:intron | 25.0% |
| !!! | AGTTTAGAATTTGAGTTGTT+CGG | - | chr7.3:20323089-20323108 | None:intergenic | 25.0% |
| !!! | TGGTTTATTTTGTACAATCA+TGG | + | chr7.3:20322812-20322831 | MS.gene58839:intron | 25.0% |
| !!! | TTGATATGGTTTTTTTTGGA+TGG | + | chr7.3:20322410-20322429 | MS.gene58839:intron | 25.0% |
| AAGATTATACCTCATCTTCA+CGG | - | chr7.3:20322288-20322307 | None:intergenic | 30.0% | |
| AATTATTAATTGCAGCCAAG+AGG | + | chr7.3:20324287-20324306 | MS.gene58839:intron | 30.0% | |
| AGTTATCAACAAGCTGAAAA+TGG | + | chr7.3:20324150-20324169 | MS.gene58839:CDS | 30.0% | |
| ATAAATGATCTTCCAAAGCA+AGG | + | chr7.3:20324334-20324353 | MS.gene58839:CDS | 30.0% | |
| ATGTTTGATGTGATGATTCT+TGG | + | chr7.3:20322375-20322394 | MS.gene58839:intron | 30.0% | |
| ATTGATGAGTACAATTATGC+TGG | + | chr7.3:20323224-20323243 | MS.gene58839:intron | 30.0% | |
| CAAAGCTGTAATTGCTAATA+GGG | - | chr7.3:20322180-20322199 | None:intergenic | 30.0% | |
| CACATGACTAACTAAGAAAA+TGG | - | chr7.3:20322946-20322965 | None:intergenic | 30.0% | |
| CATCAATGAGTTATGAATTG+AGG | - | chr7.3:20324255-20324274 | None:intergenic | 30.0% | |
| TAAATGATCTTCCAAAGCAA+GGG | + | chr7.3:20324335-20324354 | MS.gene58839:CDS | 30.0% | |
| TCATCAATACCACACTAATA+AGG | - | chr7.3:20323212-20323231 | None:intergenic | 30.0% | |
| TGCATCACTCTAATTAGTTA+AGG | - | chr7.3:20322875-20322894 | None:intergenic | 30.0% | |
| TGTTGTTGAAAATGAAGAAG+AGG | + | chr7.3:20323342-20323361 | MS.gene58839:CDS | 30.0% | |
| TTACTTTCGTTCATCGAATT+CGG | + | chr7.3:20321892-20321911 | MS.gene58839:CDS | 30.0% | |
| TTCCTTGTGTTGTATATATC+TGG | + | chr7.3:20323522-20323541 | MS.gene58839:intron | 30.0% | |
| ! | AATCATCAATTTAAGACGAG+GGG | - | chr7.3:20323656-20323675 | None:intergenic | 30.0% |
| ! | ACAATCATCAATTTAAGACG+AGG | - | chr7.3:20323658-20323677 | None:intergenic | 30.0% |
| ! | ACAGTACTGTTTTCGATTTT+CGG | - | chr7.3:20323959-20323978 | None:intergenic | 30.0% |
| ! | CAATCATCAATTTAAGACGA+GGG | - | chr7.3:20323657-20323676 | None:intergenic | 30.0% |
| ! | TCATTCACCTATCTAAAGTT+TGG | - | chr7.3:20322990-20323009 | None:intergenic | 30.0% |
| ! | TCTTCATTTTCAACAACAGA+TGG | - | chr7.3:20323340-20323359 | None:intergenic | 30.0% |
| !! | CTTCTGAAACGCAAAAATTA+AGG | - | chr7.3:20324073-20324092 | None:intergenic | 30.0% |
| !! | GCATTTTTGTTCTTGTTTGA+AGG | + | chr7.3:20322432-20322451 | MS.gene58839:intron | 30.0% |
| !!! | CTTTTCTAATTTCTAGTGGA+TGG | + | chr7.3:20323117-20323136 | MS.gene58839:intron | 30.0% |
| !!! | GGAAAGGATATGTTTTGATA+TGG | + | chr7.3:20322396-20322415 | MS.gene58839:intron | 30.0% |
| AAGAGAAGTTCTGTTAGAGA+GGG | + | chr7.3:20322094-20322113 | MS.gene58839:CDS | 35.0% | |
| AATCTTTCTTTGTCGCATTG+GGG | + | chr7.3:20322593-20322612 | MS.gene58839:intron | 35.0% | |
| AATTTGCAGTCAACTGAGAT+TGG | + | chr7.3:20322673-20322692 | MS.gene58839:intron | 35.0% | |
| AGAGTTCAATTGTACCAGTT+GGG | - | chr7.3:20323420-20323439 | None:intergenic | 35.0% | |
| ATAACTAGTGACCGTGATTA+TGG | - | chr7.3:20322904-20322923 | None:intergenic | 35.0% | |
| ATGTTTGTAGCTTCAGAAGA+AGG | + | chr7.3:20323295-20323314 | MS.gene58839:intron | 35.0% | |
| ATTGACGCCAAACTTTAGAT+AGG | + | chr7.3:20322980-20322999 | MS.gene58839:intron | 35.0% | |
| CCAAAGCTGTAATTGCTAAT+AGG | - | chr7.3:20322181-20322200 | None:intergenic | 35.0% | |
| CCTATTAGCAATTACAGCTT+TGG | + | chr7.3:20322178-20322197 | MS.gene58839:CDS | 35.0% | |
| CTTTAGATAGGTGAATGACT+TGG | + | chr7.3:20322992-20323011 | MS.gene58839:intron | 35.0% | |
| GAAAATGAAGAAGAGGAAGA+AGG | + | chr7.3:20323349-20323368 | MS.gene58839:CDS | 35.0% | |
| GAATCTTTCTTTGTCGCATT+GGG | + | chr7.3:20322592-20322611 | MS.gene58839:intron | 35.0% | |
| GCAAAGGACAATACAAGTAA+TGG | + | chr7.3:20324309-20324328 | MS.gene58839:CDS | 35.0% | |
| GTCCAGATATATACAACACA+AGG | - | chr7.3:20323527-20323546 | None:intergenic | 35.0% | |
| GTCTAAGTGTTCAGATGATT+CGG | + | chr7.3:20324092-20324111 | MS.gene58839:CDS | 35.0% | |
| GTTATGCTGAATCGTTGTAA+GGG | + | chr7.3:20322016-20322035 | MS.gene58839:CDS | 35.0% | |
| TAAAAAATTCTACCTGCGAC+AGG | - | chr7.3:20323185-20323204 | None:intergenic | 35.0% | |
| TCATCACCATTATCATCATC+AGG | - | chr7.3:20322067-20322086 | None:intergenic | 35.0% | |
| TGAATCTTTCTTTGTCGCAT+TGG | + | chr7.3:20322591-20322610 | MS.gene58839:intron | 35.0% | |
| TGATGTGATGATTCTTGGAA+AGG | + | chr7.3:20322380-20322399 | MS.gene58839:intron | 35.0% | |
| TGTTATGCTGAATCGTTGTA+AGG | + | chr7.3:20322015-20322034 | MS.gene58839:CDS | 35.0% | |
| TTATGCTGAATCGTTGTAAG+GGG | + | chr7.3:20322017-20322036 | MS.gene58839:CDS | 35.0% | |
| ! | GTTTGAAATGTGTATTCCGT+TGG | - | chr7.3:20324366-20324385 | None:intergenic | 35.0% |
| ! | TAAGGACAAGAGGAATTTTC+CGG | + | chr7.3:20323769-20323788 | MS.gene58839:CDS | 35.0% |
| ! | TTCAACAACAGATGGATTTC+TGG | - | chr7.3:20323332-20323351 | None:intergenic | 35.0% |
| !! | ATGCACTGATTCCATAATCA+CGG | + | chr7.3:20322890-20322909 | MS.gene58839:intron | 35.0% |
| AAAACAGTACTGTCCCTAAG+AGG | + | chr7.3:20323966-20323985 | MS.gene58839:CDS | 40.0% | |
| AAGCAGCAACAACAATTGCA+TGG | - | chr7.3:20321937-20321956 | None:intergenic | 40.0% | |
| AATGAAGAAGAGGAAGAAGG+AGG | + | chr7.3:20323352-20323371 | MS.gene58839:CDS | 40.0% | |
| ATCTTTCTTTGTCGCATTGG+GGG | + | chr7.3:20322594-20322613 | MS.gene58839:intron | 40.0% | |
| CAAGAGAAGTTCTGTTAGAG+AGG | + | chr7.3:20322093-20322112 | MS.gene58839:CDS | 40.0% | |
| CGGAATACACATTTCAAACC+CGG | + | chr7.3:20324367-20324386 | MS.gene58839:CDS | 40.0% | |
| CTCCTAGACTTAAACTCCTT+TGG | - | chr7.3:20321968-20321987 | None:intergenic | 40.0% | |
| GACGATGTAAAGTTCTTCGA+TGG | + | chr7.3:20323544-20323563 | MS.gene58839:intron | 40.0% | |
| GAGAGTTCAATTGTACCAGT+TGG | - | chr7.3:20323421-20323440 | None:intergenic | 40.0% | |
| GAGTTCAATTGTACCAGTTG+GGG | - | chr7.3:20323419-20323438 | None:intergenic | 40.0% | |
| GAGTTTAAGTCTAGGAGAGA+TGG | + | chr7.3:20321971-20321990 | MS.gene58839:CDS | 40.0% | |
| GATTGCAGTAGGGAAGAAAA+TGG | + | chr7.3:20322139-20322158 | MS.gene58839:CDS | 40.0% | |
| GTCCAAAGGAGTTTAAGTCT+AGG | + | chr7.3:20321963-20321982 | MS.gene58839:CDS | 40.0% | |
| GTGAATCATCTGAGAAAGCA+TGG | + | chr7.3:20322703-20322722 | MS.gene58839:CDS | 40.0% | |
| TAGGGAAGAAAATGGAGTGA+TGG | + | chr7.3:20322147-20322166 | MS.gene58839:CDS | 40.0% | |
| TATTTCTCGTCTGCGAATTG+TGG | + | chr7.3:20322792-20322811 | MS.gene58839:intron | 40.0% | |
| TCAAACCCGGAAATCACAAT+CGG | + | chr7.3:20324380-20324399 | MS.gene58839:CDS | 40.0% | |
| TCAGCACATGAAGAAAAACG+AGG | + | chr7.3:20323832-20323851 | MS.gene58839:CDS | 40.0% | |
| TCTCAATAACCGTGAAGATG+AGG | + | chr7.3:20322276-20322295 | MS.gene58839:CDS | 40.0% | |
| TGGCGTCAATGTTAACATCA+TGG | - | chr7.3:20322970-20322989 | None:intergenic | 40.0% | |
| TGGTACAATTGAACTCTCAC+AGG | + | chr7.3:20323423-20323442 | MS.gene58839:CDS | 40.0% | |
| TGTAAAGTTCTTCGATGGCA+TGG | + | chr7.3:20323549-20323568 | MS.gene58839:intron | 40.0% | |
| TTCAACAAGAACCGTGACAA+CGG | + | chr7.3:20323719-20323738 | MS.gene58839:CDS | 40.0% | |
| TTGTATTGTCCTTTGCCTCT+TGG | - | chr7.3:20324305-20324324 | None:intergenic | 40.0% | |
| TTGTCACGGTTCTTGTTGAA+TGG | - | chr7.3:20323719-20323738 | None:intergenic | 40.0% | |
| ! | CTACCTAGCTTTCGTTGTTA+CGG | + | chr7.3:20323615-20323634 | MS.gene58839:intron | 40.0% |
| ! | GTACTGTTTTCGATTTTCGG+AGG | - | chr7.3:20323956-20323975 | None:intergenic | 40.0% |
| ! | TCTGTGCCTGATGATGATAA+TGG | + | chr7.3:20322058-20322077 | MS.gene58839:CDS | 40.0% |
| !! | ACAGATGGATTTCTGGAATC+CGG | - | chr7.3:20323325-20323344 | None:intergenic | 40.0% |
| !! | TCAGCAGCCATTGGTTTATT+AGG | - | chr7.3:20323869-20323888 | None:intergenic | 40.0% |
| AAACCAATGGCTGCTGATAC+TGG | + | chr7.3:20323872-20323891 | MS.gene58839:CDS | 45.0% | |
| AAGAAAGCCCCTTCATCCAA+AGG | - | chr7.3:20323391-20323410 | None:intergenic | 45.0% | |
| ACTCTCTGTCGATCTTCTGA+AGG | + | chr7.3:20322561-20322580 | MS.gene58839:CDS | 45.0% | |
| CATGAAGAAAAACGAGGCTG+CGG | + | chr7.3:20323838-20323857 | MS.gene58839:CDS | 45.0% | |
| CATGTTGCTACAGTCTGACT+CGG | + | chr7.3:20322501-20322520 | MS.gene58839:intron | 45.0% | |
| CATTCAGCGAAAAGCCAATG+TGG | + | chr7.3:20323919-20323938 | MS.gene58839:CDS | 45.0% | |
| CGGAAATCACAATCGGCAAT+GGG | + | chr7.3:20324387-20324406 | MS.gene58839:CDS | 45.0% | |
| CTAAGCTTGAAGCCACTAAG+CGG | + | chr7.3:20324115-20324134 | MS.gene58839:CDS | 45.0% | |
| GAACCGTAACAACGAAAGCT+AGG | - | chr7.3:20323621-20323640 | None:intergenic | 45.0% | |
| GCAGTCAACTGAGATTGGAA+AGG | + | chr7.3:20322678-20322697 | MS.gene58839:intron | 45.0% | |
| GCTCTCAAACTAAGGACAAG+AGG | + | chr7.3:20323759-20323778 | MS.gene58839:CDS | 45.0% | |
| GGAAATCACAATCGGCAATG+GGG | + | chr7.3:20324388-20324407 | MS.gene58839:CDS | 45.0% | |
| GGTGAGGCCTAATAAACCAA+TGG | + | chr7.3:20323859-20323878 | MS.gene58839:CDS | 45.0% | |
| TAATTGCAGCCAAGAGGCAA+AGG | + | chr7.3:20324293-20324312 | MS.gene58839:intron | 45.0% | |
| TGAGAGTTCGTGCTAGTTGA+CGG | - | chr7.3:20322741-20322760 | None:intergenic | 45.0% | |
| TTCGATGGCATGGATGATGA+TGG | + | chr7.3:20323559-20323578 | MS.gene58839:CDS | 45.0% | |
| ! | ACGGCTGTTTCATTAGATGC+CGG | - | chr7.3:20323791-20323810 | None:intergenic | 45.0% |
| ! | AGCTCTTGGCTCTCAAACTA+AGG | + | chr7.3:20323751-20323770 | MS.gene58839:CDS | 45.0% |
| ! | CATTGCCGATTGTGATTTCC+GGG | - | chr7.3:20324388-20324407 | None:intergenic | 45.0% |
| ! | CCATTGCCGATTGTGATTTC+CGG | - | chr7.3:20324389-20324408 | None:intergenic | 45.0% |
| ! | CGCTGAATGTTCGAGTTTAG+CGG | - | chr7.3:20323908-20323927 | None:intergenic | 45.0% |
| ! | TCTGAGAAAGCATGGATCGA+AGG | + | chr7.3:20322711-20322730 | MS.gene58839:CDS | 45.0% |
| ! | TGCTGCTTCTGATTGTCCAA+AGG | + | chr7.3:20321949-20321968 | MS.gene58839:CDS | 45.0% |
| ! | TTAGTTTGAGAGCCAAGAGC+TGG | - | chr7.3:20323752-20323771 | None:intergenic | 45.0% |
| ! | TTCTAGTGGATGGAAAGAGC+TGG | + | chr7.3:20323127-20323146 | MS.gene58839:intron | 45.0% |
| !! | ACATCTTGCTGAGCATTGAG+AGG | - | chr7.3:20323992-20324011 | None:intergenic | 45.0% |
| !!! | AACTTGCTGCTGAGGTTTTG+AGG | + | chr7.3:20322242-20322261 | MS.gene58839:CDS | 45.0% |
| !!! | TCGATTTTCGGAGGCATCTT+CGG | - | chr7.3:20323947-20323966 | None:intergenic | 45.0% |
| AAAGCCCCTTCATCCAAAGG+AGG | - | chr7.3:20323388-20323407 | None:intergenic | 50.0% | |
| AACGGAAGAAAGCCAGCTCT+TGG | + | chr7.3:20323737-20323756 | MS.gene58839:CDS | 50.0% | |
| AATTCTACCTGCGACAGGTG+TGG | - | chr7.3:20323180-20323199 | None:intergenic | 50.0% | |
| AGTCAGGGTCACTTGATCAG+TGG | + | chr7.3:20321864-20321883 | MS.gene58839:CDS | 50.0% | |
| CAAAGCAAGGGTCTGTCCAA+CGG | + | chr7.3:20324347-20324366 | MS.gene58839:CDS | 50.0% | |
| CCGGAAATCACAATCGGCAA+TGG | + | chr7.3:20324386-20324405 | MS.gene58839:CDS | 50.0% | |
| CCTTCATCCAAAGGAGGTGA+CGG | - | chr7.3:20323382-20323401 | None:intergenic | 50.0% | |
| CGTCACCTCCTTTGGATGAA+GGG | + | chr7.3:20323380-20323399 | MS.gene58839:CDS | 50.0% | |
| CTCTTGAAGTCTCCGCTTAG+TGG | - | chr7.3:20324130-20324149 | None:intergenic | 50.0% | |
| CTTCATCCAAAGGAGGTGAC+GGG | - | chr7.3:20323381-20323400 | None:intergenic | 50.0% | |
| GAAAGAGCTGGTCAATGCGT+GGG | + | chr7.3:20323139-20323158 | MS.gene58839:CDS | 50.0% | |
| GCTTTCTTTGTTGCCCCAAC+TGG | + | chr7.3:20323403-20323422 | MS.gene58839:CDS | 50.0% | |
| GTCACCTCCTTTGGATGAAG+GGG | + | chr7.3:20323381-20323400 | MS.gene58839:CDS | 50.0% | |
| TGCTAGCAAAGAGAGCAAGG+TGG | + | chr7.3:20322117-20322136 | MS.gene58839:CDS | 50.0% | |
| ! | AGCTTCAGAAGAAGGCACAC+CGG | + | chr7.3:20323303-20323322 | MS.gene58839:intron | 50.0% |
| ! | CTGGCTTTCTTCCGTTGTCA+CGG | - | chr7.3:20323733-20323752 | None:intergenic | 50.0% |
| ! | CTTGTTGTCCTTGGCAGTGA+CGG | - | chr7.3:20323810-20323829 | None:intergenic | 50.0% |
| ! | TCGTTGTAAGGGGTGTGAGA+AGG | + | chr7.3:20322027-20322046 | MS.gene58839:CDS | 50.0% |
| ! | TGCTGTTTGAGTCTCTGAGG+AGG | + | chr7.3:20322524-20322543 | MS.gene58839:CDS | 50.0% |
| !! | AGAGCAAGGTGGATTGCAGT+AGG | + | chr7.3:20322128-20322147 | MS.gene58839:CDS | 50.0% |
| !! | GAGCAAGGTGGATTGCAGTA+GGG | + | chr7.3:20322129-20322148 | MS.gene58839:CDS | 50.0% |
| !! | GAGCATTGAGAGGCCTCTTA+GGG | - | chr7.3:20323982-20324001 | None:intergenic | 50.0% |
| !! | GCAATCACAACTTGCTGCTG+AGG | + | chr7.3:20322234-20322253 | MS.gene58839:CDS | 50.0% |
| !! | GTGCTGACTCTTGTTGTCCT+TGG | - | chr7.3:20323819-20323838 | None:intergenic | 50.0% |
| !! | TGAGCATTGAGAGGCCTCTT+AGG | - | chr7.3:20323983-20324002 | None:intergenic | 50.0% |
| AGAAAAACGAGGCTGCGGTG+AGG | + | chr7.3:20323843-20323862 | MS.gene58839:CDS | 55.0% | |
| AGGCATCTTCGGCTCCACAT+TGG | - | chr7.3:20323936-20323955 | None:intergenic | 55.0% | |
| CACAATCGGCAATGGGGCAA+CGG | + | chr7.3:20324394-20324413 | MS.gene58839:CDS | 55.0% | |
| CAGGGTCACTTGATCAGTGG+AGG | + | chr7.3:20321867-20321886 | MS.gene58839:CDS | 55.0% | |
| CCGTCACCTCCTTTGGATGA+AGG | + | chr7.3:20323379-20323398 | MS.gene58839:CDS | 55.0% | |
| CGTTGGACAGACCCTTGCTT+TGG | - | chr7.3:20324349-20324368 | None:intergenic | 55.0% | |
| GGAAAGAGCTGGTCAATGCG+TGG | + | chr7.3:20323138-20323157 | MS.gene58839:CDS | 55.0% | |
| GGGTGCTAGCAAAGAGAGCA+AGG | + | chr7.3:20322114-20322133 | MS.gene58839:CDS | 55.0% | |
| TCAACAACCACACCTGTCGC+AGG | + | chr7.3:20323170-20323189 | MS.gene58839:CDS | 55.0% | |
| TCGAGTTTAGCGGCCTTGCA+CGG | - | chr7.3:20323898-20323917 | None:intergenic | 55.0% | |
| TGAAACAGCCGTCACTGCCA+AGG | + | chr7.3:20323799-20323818 | MS.gene58839:CDS | 55.0% | |
| !! | CGGTGCTGTTTGAGTCTCTG+AGG | + | chr7.3:20322521-20322540 | MS.gene58839:CDS | 55.0% |
| AGGACTCCCGTCACCTCCTT+TGG | + | chr7.3:20323372-20323391 | MS.gene58839:CDS | 60.0% | |
| CGGCCAGTATCAGCAGCCAT+TGG | - | chr7.3:20323878-20323897 | None:intergenic | 60.0% | |
| CTGCTGATACTGGCCGTGCA+AGG | + | chr7.3:20323882-20323901 | MS.gene58839:CDS | 60.0% | |
| GCTGGTCAATGCGTGGGTGA+AGG | + | chr7.3:20323145-20323164 | MS.gene58839:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 20321860 | 20324426 | 20321860 | ID=MS.gene58839 |
| chr7.3 | mRNA | 20321860 | 20324426 | 20321860 | ID=MS.gene58839.t1;Parent=MS.gene58839 |
| chr7.3 | exon | 20321860 | 20322297 | 20321860 | ID=MS.gene58839.t1.exon1;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20321860 | 20322297 | 20321860 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20322514 | 20322582 | 20322514 | ID=MS.gene58839.t1.exon2;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20322514 | 20322582 | 20322514 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20322682 | 20322764 | 20322682 | ID=MS.gene58839.t1.exon3;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20322682 | 20322764 | 20322682 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20323133 | 20323191 | 20323133 | ID=MS.gene58839.t1.exon4;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20323133 | 20323191 | 20323133 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20323305 | 20323444 | 20323305 | ID=MS.gene58839.t1.exon5;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20323305 | 20323444 | 20323305 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20323556 | 20323583 | 20323556 | ID=MS.gene58839.t1.exon6;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20323556 | 20323583 | 20323556 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20323699 | 20324009 | 20323699 | ID=MS.gene58839.t1.exon7;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20323699 | 20324009 | 20323699 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20324090 | 20324171 | 20324090 | ID=MS.gene58839.t1.exon8;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20324090 | 20324171 | 20324090 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| chr7.3 | exon | 20324302 | 20324426 | 20324302 | ID=MS.gene58839.t1.exon9;Parent=MS.gene58839.t1 |
| chr7.3 | CDS | 20324302 | 20324426 | 20324302 | ID=cds.MS.gene58839.t1;Parent=MS.gene58839.t1 |
| Gene Sequence |
| Protein sequence |
