Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58924.t1 | XP_003609635.2 | 96.6 | 1163 | 39 | 0 | 1 | 1163 | 1 | 1163 | 0.00E+00 | 2158.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58924.t1 | Q6A332 | 47.0 | 1148 | 523 | 22 | 48 | 1163 | 39 | 1132 | 3.8e-237 | 823.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58924.t1 | G7JKB2 | 96.6 | 1163 | 39 | 0 | 1 | 1163 | 1 | 1163 | 0.0e+00 | 2158.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58924.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58924.t1 | MTR_4g119390 | 96.647 | 1163 | 39 | 0 | 1 | 1163 | 1 | 1163 | 0.0 | 2341 |
| MS.gene58924.t1 | MTR_4g119390 | 93.823 | 1198 | 39 | 1 | 1 | 1163 | 1 | 1198 | 0.0 | 2320 |
| MS.gene58924.t1 | MTR_1g083040 | 43.317 | 1212 | 561 | 34 | 1 | 1163 | 1 | 1135 | 0.0 | 798 |
| MS.gene58924.t1 | MTR_1g083040 | 43.568 | 1205 | 555 | 36 | 1 | 1163 | 1 | 1122 | 0.0 | 797 |
| MS.gene58924.t1 | MTR_1g083040 | 42.822 | 1212 | 556 | 35 | 1 | 1163 | 1 | 1124 | 0.0 | 778 |
| MS.gene58924.t1 | MTR_1g083040 | 43.071 | 1205 | 550 | 37 | 1 | 1163 | 1 | 1111 | 0.0 | 778 |
| MS.gene58924.t1 | MTR_1g083040 | 45.756 | 813 | 370 | 22 | 1 | 784 | 1 | 771 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58924.t1 | AT3G21430 | 46.963 | 1169 | 532 | 23 | 28 | 1163 | 19 | 1132 | 0.0 | 924 |
| MS.gene58924.t1 | AT3G21430 | 47.124 | 1165 | 532 | 23 | 28 | 1163 | 19 | 1128 | 0.0 | 922 |
| MS.gene58924.t1 | AT3G21430 | 47.124 | 1165 | 532 | 23 | 28 | 1163 | 19 | 1128 | 0.0 | 922 |
| MS.gene58924.t1 | AT3G05380 | 38.337 | 986 | 457 | 33 | 1 | 914 | 1 | 907 | 3.66e-156 | 494 |
| MS.gene58924.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 9.51e-30 | 128 |
| MS.gene58924.t1 | AT3G05380 | 38.337 | 986 | 457 | 33 | 1 | 914 | 1 | 907 | 3.66e-156 | 494 |
| MS.gene58924.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 9.51e-30 | 128 |
| MS.gene58924.t1 | AT3G05380 | 38.337 | 986 | 457 | 33 | 1 | 914 | 1 | 907 | 3.66e-156 | 494 |
| MS.gene58924.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 9.51e-30 | 128 |
| MS.gene58924.t1 | AT3G05380 | 38.235 | 986 | 457 | 33 | 1 | 914 | 1 | 906 | 3.84e-156 | 494 |
| MS.gene58924.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 883 | 1051 | 9.50e-30 | 128 |
| MS.gene58924.t1 | AT3G05380 | 37.235 | 897 | 424 | 30 | 89 | 914 | 1 | 829 | 1.40e-129 | 421 |
| MS.gene58924.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 806 | 974 | 9.82e-30 | 128 |
| MS.gene58924.t1 | AT5G27610 | 40.878 | 433 | 212 | 11 | 386 | 784 | 288 | 710 | 1.60e-70 | 256 |
| MS.gene58924.t1 | AT5G27610 | 47.893 | 261 | 99 | 9 | 1 | 257 | 1 | 228 | 1.08e-53 | 204 |
| MS.gene58924.t1 | AT5G27610 | 35.227 | 176 | 106 | 1 | 988 | 1163 | 803 | 970 | 1.28e-22 | 105 |
Find 246 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTGTCAGGGTTTGTTTC+TGG | 0.086747 | 8.3:+7560105 | None:intergenic |
| CCGAGTTATCTCCGTATTTC+TGG | 0.088103 | 8.3:+7553422 | None:intergenic |
| TTTCACCATATTTAGGTTTC+TGG | 0.112732 | 8.3:+7556786 | None:intergenic |
| TGCAAAATCTGTGTCAAAAT+TGG | 0.152697 | 8.3:+7561454 | None:intergenic |
| TATGAAGCTTACCGTGAATA+TGG | 0.199391 | 8.3:-7567537 | MS.gene58924:CDS |
| CACCTTGCCAAAATGTTTAA+TGG | 0.203085 | 8.3:+7552032 | None:intergenic |
| CTAGGGATTTCACCATATTT+AGG | 0.204552 | 8.3:+7556779 | None:intergenic |
| TAGCAGCCCATTAAACATTT+TGG | 0.215940 | 8.3:-7552039 | MS.gene58924:CDS |
| TTGCCAATAGAATATGAAAT+AGG | 0.224344 | 8.3:+7562039 | None:intergenic |
| ACACGCTGCCCAACAATTAA+TGG | 0.227330 | 8.3:+7555426 | None:intergenic |
| GGTAGATTCTTTGAACAAAA+TGG | 0.238242 | 8.3:+7550630 | None:intergenic |
| TCATGAATCTCCCTTGTCTT+TGG | 0.253815 | 8.3:+7555390 | None:intergenic |
| CAAGCATTTGAATGACTTAA+AGG | 0.264328 | 8.3:-7561525 | MS.gene58924:CDS |
| TGGTACACAGCGACCTTTAA+TGG | 0.271033 | 8.3:+7554461 | None:intergenic |
| AAACCTTGATGAGTCTAAAA+TGG | 0.290911 | 8.3:-7558537 | MS.gene58924:CDS |
| CTGGTATGCTCCCTCTGCTT+TGG | 0.301751 | 8.3:+7558448 | None:intergenic |
| GGCCTCATGCTGTTCGAAAA+AGG | 0.303491 | 8.3:-7562074 | MS.gene58924:CDS |
| TTCTGTATCTCACCATATAT+TGG | 0.303861 | 8.3:+7550609 | None:intergenic |
| GTGATATCATACCAGGAATT+AGG | 0.306104 | 8.3:-7562095 | MS.gene58924:intron |
| GGCCATAGATTCTATTACTT+TGG | 0.309553 | 8.3:-7552084 | MS.gene58924:CDS |
| GTCCCTATTTCATATTCTAT+TGG | 0.311459 | 8.3:-7562042 | MS.gene58924:CDS |
| TCTACTGCTTTGTTGTCATT+TGG | 0.311783 | 8.3:+7564362 | None:intergenic |
| AGCTACACTGCTCATGATTC+AGG | 0.314415 | 8.3:-7551928 | MS.gene58924:intron |
| GGTGATAATGCAGATTATTC+TGG | 0.316155 | 8.3:-7561653 | MS.gene58924:CDS |
| AGCCAAAGTAATAGAATCTA+TGG | 0.320570 | 8.3:+7552082 | None:intergenic |
| GACAGACCATTATAGTATTA+TGG | 0.321669 | 8.3:-7565386 | MS.gene58924:intron |
| TGGTATGCTCCCTCTGCTTT+GGG | 0.323032 | 8.3:+7558449 | None:intergenic |
| CAGTTTGACCAGCATGAACT+TGG | 0.326153 | 8.3:-7555327 | MS.gene58924:CDS |
| GAAGCCCATTGCAAATTTAG+AGG | 0.326174 | 8.3:-7553145 | MS.gene58924:CDS |
| ATCAAAAGAAGCTGATATAT+TGG | 0.334194 | 8.3:-7553661 | MS.gene58924:CDS |
| GGAAGGCATACCTGCTGATT+TGG | 0.335570 | 8.3:-7555454 | MS.gene58924:CDS |
| TCTTGTTGTATCATTGGTTT+TGG | 0.337366 | 8.3:+7556628 | None:intergenic |
| CGGAAACAGTTCAAGAAAAT+CGG | 0.338674 | 8.3:-7558504 | MS.gene58924:CDS |
| GAGGGCACTGCTTCTGTGGT+TGG | 0.350015 | 8.3:-7565424 | MS.gene58924:CDS |
| TTGCTCTTGCAGTACGTAAT+AGG | 0.355212 | 8.3:-7567272 | MS.gene58924:CDS |
| CATTGTGCATAAGCTCTCTA+AGG | 0.355553 | 8.3:+7554547 | None:intergenic |
| GGTAGTTCTGAGTTGAGTTT+AGG | 0.359133 | 8.3:-7561686 | MS.gene58924:CDS |
| AGCTTGAACAACCATGGTTC+GGG | 0.363741 | 8.3:+7553017 | None:intergenic |
| CCACTCAATACGAGTCAATC+TGG | 0.366185 | 8.3:+7556291 | None:intergenic |
| TCATTCCAGAAACCTAAATA+TGG | 0.366857 | 8.3:-7556791 | MS.gene58924:CDS |
| GAGAAGTCAGATGCCATTAA+AGG | 0.366873 | 8.3:-7554474 | MS.gene58924:CDS |
| GACTTTGAGATATAGATTCT+TGG | 0.367314 | 8.3:+7553076 | None:intergenic |
| TCAAAGAATCTACCAATATA+TGG | 0.367899 | 8.3:-7550621 | MS.gene58924:CDS |
| TTCTTACCATAATACTATAA+TGG | 0.367930 | 8.3:+7565380 | None:intergenic |
| TGCTATGCAGAAGAGAAAAT+TGG | 0.368184 | 8.3:-7567607 | MS.gene58924:intron |
| AGTTGTATCAACCATTTGTT+TGG | 0.371204 | 8.3:+7561975 | None:intergenic |
| TCATTCTAGCAGGAGTAATA+TGG | 0.372331 | 8.3:+7554577 | None:intergenic |
| AGGGCACTGCTTCTGTGGTT+GGG | 0.372492 | 8.3:-7565423 | MS.gene58924:CDS |
| GTGAAGAAGTCCACGGTTAA+AGG | 0.375088 | 8.3:-7556838 | MS.gene58924:CDS |
| TTGTTGAAGAAAAGGCATTC+TGG | 0.378476 | 8.3:-7564278 | MS.gene58924:intron |
| ACCTTGCCAAAATGTTTAAT+GGG | 0.382506 | 8.3:+7552033 | None:intergenic |
| AGAAAATTGGCCGATATGTT+AGG | 0.389878 | 8.3:-7567594 | MS.gene58924:CDS |
| TGCCAATAGAATATGAAATA+GGG | 0.392930 | 8.3:+7562040 | None:intergenic |
| GTATGATCTTGTTGTATCAT+TGG | 0.395885 | 8.3:+7556622 | None:intergenic |
| AGCCTTCTGCCTATTCTTGC+CGG | 0.398604 | 8.3:+7567916 | None:intergenic |
| TATCATAAGAAATCAGATAT+TGG | 0.401370 | 8.3:-7550577 | MS.gene58924:CDS |
| TCCAATCTTTCCCATATTCA+CGG | 0.405262 | 8.3:+7567526 | None:intergenic |
| TGTGTCAAAATTGGATTTGA+AGG | 0.405494 | 8.3:+7561463 | None:intergenic |
| CATTATGCTGAAGTTCTTGC+TGG | 0.413232 | 8.3:-7555483 | MS.gene58924:CDS |
| AATACCTGTGCAACATCAGC+TGG | 0.413425 | 8.3:+7550678 | None:intergenic |
| GCCTGTCATTGTTGAAGAAA+AGG | 0.415958 | 8.3:-7564286 | MS.gene58924:CDS |
| CATGTTAAATCAGGAATAGT+TGG | 0.422787 | 8.3:-7561740 | MS.gene58924:CDS |
| GAGATAATATTGGAAGAGTA+AGG | 0.427648 | 8.3:-7561607 | MS.gene58924:CDS |
| AATGACAACAAAGCAGTAGA+TGG | 0.428914 | 8.3:-7564359 | MS.gene58924:CDS |
| CAGCAAATACCGGCAAGAAT+AGG | 0.429426 | 8.3:-7567925 | MS.gene58924:CDS |
| CTACTCTTATGCAGTTCTCT+TGG | 0.430013 | 8.3:-7555585 | MS.gene58924:intron |
| AAGCCTTGTACACTAAGAAC+AGG | 0.430030 | 8.3:-7567233 | MS.gene58924:CDS |
| CGGAACAGTAGAGATAATAT+TGG | 0.430192 | 8.3:-7561617 | MS.gene58924:CDS |
| ATAAATGCCTTACCAGTGTC+AGG | 0.432931 | 8.3:+7560093 | None:intergenic |
| TGGCCCAGCCATTAATTGTT+GGG | 0.439743 | 8.3:-7555434 | MS.gene58924:CDS |
| CTTCTAGGAACTTGTGTTGT+CGG | 0.445079 | 8.3:-7553479 | MS.gene58924:intron |
| TAGCTTGAACAACCATGGTT+CGG | 0.445922 | 8.3:+7553016 | None:intergenic |
| ATAAATCCATCGCATCATAC+TGG | 0.446266 | 8.3:-7556567 | MS.gene58924:CDS |
| AATCTAGAAGTGTAAATAAG+AGG | 0.448249 | 8.3:-7567991 | MS.gene58924:CDS |
| AAATCACAAGCAAAAGTTGC+GGG | 0.448716 | 8.3:-7553747 | MS.gene58924:CDS |
| TTTAGAGGATCCCGGTGGTC+AGG | 0.449914 | 8.3:-7553130 | MS.gene58924:CDS |
| CATACTGGTTCTCATTTAAG+TGG | 0.450622 | 8.3:-7558244 | MS.gene58924:CDS |
| TTGGCCCAGCCATTAATTGT+TGG | 0.451045 | 8.3:-7555435 | MS.gene58924:CDS |
| TATTTGAAGACATATTTCCT+AGG | 0.454212 | 8.3:+7556761 | None:intergenic |
| GCCTCCAGTGGAACCGATGA+TGG | 0.455246 | 8.3:-7561500 | MS.gene58924:CDS |
| AACATAAACTTAATCAGTAC+CGG | 0.455370 | 8.3:-7555521 | MS.gene58924:CDS |
| TGAACAAAATGGCTGCAAAC+TGG | 0.455570 | 8.3:+7550641 | None:intergenic |
| GAATAGTACGGAACGTCATA+AGG | 0.457036 | 8.3:-7556542 | MS.gene58924:intron |
| TACCCTGTTCTTAGTGTACA+AGG | 0.457694 | 8.3:+7567230 | None:intergenic |
| ATTAACTGAAGCAAATGAAC+AGG | 0.462633 | 8.3:-7553350 | MS.gene58924:intron |
| GAACTGAAGCACATGAATGA+TGG | 0.462918 | 8.3:-7553457 | MS.gene58924:CDS |
| AAGAGTAAGGAATCAGGAAA+AGG | 0.465011 | 8.3:-7561594 | MS.gene58924:CDS |
| TATTGGAAGAGTAAGGAATC+AGG | 0.465078 | 8.3:-7561600 | MS.gene58924:CDS |
| TTAGAGAGCTTATGCACAAT+GGG | 0.466746 | 8.3:-7554545 | MS.gene58924:CDS |
| AATGTGATCTGACAGATTCC+CGG | 0.468252 | 8.3:+7555502 | None:intergenic |
| AAGTGTGAGGTCTTCTTACA+AGG | 0.469533 | 8.3:-7561423 | MS.gene58924:CDS |
| CTGTTGACCATTGTAGATAC+CGG | 0.470249 | 8.3:-7555353 | MS.gene58924:CDS |
| TATCGTTGACAAAGCAGAAA+GGG | 0.470257 | 8.3:-7556740 | MS.gene58924:CDS |
| ATGAAGCTTACCGTGAATAT+GGG | 0.470402 | 8.3:-7567536 | MS.gene58924:CDS |
| ACCGTGAATATGGGAAAGAT+TGG | 0.471794 | 8.3:-7567527 | MS.gene58924:CDS |
| ATCTATGGCCAGAAAATTTG+TGG | 0.473141 | 8.3:+7552097 | None:intergenic |
| AGAGTAAGGAATCAGGAAAA+GGG | 0.476289 | 8.3:-7561593 | MS.gene58924:CDS |
| CATTCCGTTGCATCAGATGA+TGG | 0.476385 | 8.3:-7564311 | MS.gene58924:CDS |
| AATTGGATTTGAAGGAACTC+TGG | 0.478314 | 8.3:+7561471 | None:intergenic |
| TCCAGAGGGCACTGCTTCTG+TGG | 0.478808 | 8.3:-7565428 | MS.gene58924:CDS |
| ACCACAGAAGCAGTGCCCTC+TGG | 0.479339 | 8.3:+7565427 | None:intergenic |
| ACGTAATAGGACCATGGAAA+TGG | 0.480725 | 8.3:-7567259 | MS.gene58924:CDS |
| CCATTGTGGTCCTAACATAT+CGG | 0.481285 | 8.3:+7567584 | None:intergenic |
| GTTGTGGCAAGCTGAGCAAT+TGG | 0.482009 | 8.3:+7553098 | None:intergenic |
| TTTCCATCTTTCTTCTAGGT+CGG | 0.482426 | 8.3:+7556653 | None:intergenic |
| TTGAGTGGGGAGTCATTAGA+AGG | 0.484128 | 8.3:-7556276 | MS.gene58924:intron |
| ATTCTGGAAAATTAATTCAT+CGG | 0.486527 | 8.3:-7561637 | MS.gene58924:CDS |
| CAATGAGATATGAGTTCTGA+GGG | 0.491306 | 8.3:+7551954 | None:intergenic |
| TTCTATTGGCAAAGATAATG+AGG | 0.491767 | 8.3:-7562028 | MS.gene58924:CDS |
| TCCTGCTTACAGCACTAAGC+TGG | 0.492772 | 8.3:+7558429 | None:intergenic |
| AGGTTCTCATTCATTCTAGC+AGG | 0.493474 | 8.3:+7554567 | None:intergenic |
| CGCAAATCTGACATGGATGA+AGG | 0.495520 | 8.3:-7561707 | MS.gene58924:CDS |
| ATCAGCAGGTATGCCTTCCT+TGG | 0.495822 | 8.3:+7555458 | None:intergenic |
| GGATCCTCTAAATTTGCAAT+GGG | 0.496083 | 8.3:+7553141 | None:intergenic |
| CCATCACCCAATCTGAAAAG+TGG | 0.497047 | 8.3:-7561859 | MS.gene58924:CDS |
| ATGGCATCTGACTTCTCACT+TGG | 0.499265 | 8.3:+7554480 | None:intergenic |
| AATTGCTCTGAAAATCTTCG+TGG | 0.500777 | 8.3:+7555558 | None:intergenic |
| AGTTTGACCAGCATGAACTT+GGG | 0.504601 | 8.3:-7555326 | MS.gene58924:CDS |
| AACTGAAGCACATGAATGAT+GGG | 0.505603 | 8.3:-7553456 | MS.gene58924:CDS |
| GACTCGTGCTCTAGAAAAGA+AGG | 0.506028 | 8.3:-7553625 | MS.gene58924:intron |
| GTTAGGACCACAATGGAGTA+AGG | 0.506745 | 8.3:-7567577 | MS.gene58924:CDS |
| CTAAATATGGTGAAATCCCT+AGG | 0.507305 | 8.3:-7556778 | MS.gene58924:CDS |
| GATAAAGATGCAGCAAATAC+CGG | 0.508252 | 8.3:-7567935 | MS.gene58924:CDS |
| GCTGCCCAACAATTAATGGC+TGG | 0.508774 | 8.3:+7555430 | None:intergenic |
| AAGTGGTTCCCAGAAAATCA+AGG | 0.509560 | 8.3:-7558227 | MS.gene58924:intron |
| AATGGCTGGGCCAAATCAGC+AGG | 0.510693 | 8.3:+7555444 | None:intergenic |
| GGAAACAGTTCAAGAAAATC+GGG | 0.510715 | 8.3:-7558503 | MS.gene58924:CDS |
| GAGATATAGATTCTTGGTTG+TGG | 0.512907 | 8.3:+7553082 | None:intergenic |
| GCGGGCAGTGAGATTTGTAA+TGG | 0.514341 | 8.3:-7553729 | MS.gene58924:CDS |
| TTAAGTTCATCATCTTGTAC+AGG | 0.517590 | 8.3:+7552008 | None:intergenic |
| AATGAGAACTTGATGCTGAT+TGG | 0.518355 | 8.3:+7553706 | None:intergenic |
| TTTCAGAAAGACAGAAAGCA+AGG | 0.519639 | 8.3:-7552189 | MS.gene58924:CDS |
| CTGCCCAACAATTAATGGCT+GGG | 0.521000 | 8.3:+7555431 | None:intergenic |
| TCCATCATCGGTTCCACTGG+AGG | 0.521031 | 8.3:+7561499 | None:intergenic |
| TCTAAAATGGAAACAGATAA+CGG | 0.522858 | 8.3:-7558524 | MS.gene58924:CDS |
| ACCAGCTTAGTGCTGTAAGC+AGG | 0.523976 | 8.3:-7558430 | MS.gene58924:CDS |
| CAATCTGAAAAGTGGGAAGA+AGG | 0.524576 | 8.3:-7561851 | MS.gene58924:intron |
| CAGAATGATGAAACACATAC+TGG | 0.524927 | 8.3:-7558259 | MS.gene58924:CDS |
| GGCGATGGTGCACCTCTGAA+TGG | 0.528930 | 8.3:-7556396 | MS.gene58924:CDS |
| ATACTTAGAACATGTTGGAC+TGG | 0.530255 | 8.3:-7556323 | MS.gene58924:CDS |
| AGGCCGACCTAGAAGAAAGA+TGG | 0.530402 | 8.3:-7556656 | MS.gene58924:CDS |
| TGGGGACAATATTGTGTGCT+CGG | 0.531755 | 8.3:+7554500 | None:intergenic |
| TGATTGGAGTCGCTCAAGAA+AGG | 0.533822 | 8.3:+7553680 | None:intergenic |
| GTACTGCTTACATGCATAGC+AGG | 0.536620 | 8.3:+7554438 | None:intergenic |
| CAGATTGACTCGTATTGAGT+GGG | 0.537564 | 8.3:-7556290 | MS.gene58924:CDS |
| ATAGTGCTATTGATTATCCA+TGG | 0.540206 | 8.3:-7556369 | MS.gene58924:CDS |
| ATTTGAAGACATATTTCCTA+GGG | 0.540728 | 8.3:+7556762 | None:intergenic |
| TTGAGTTTAGGAAGTACAGA+AGG | 0.542444 | 8.3:-7561674 | MS.gene58924:CDS |
| GTTTGACCAGCATGAACTTG+GGG | 0.546671 | 8.3:-7555325 | MS.gene58924:CDS |
| CTTCACATCAAACGCGGCGA+TGG | 0.547360 | 8.3:-7556411 | MS.gene58924:CDS |
| CACTCAATACGAGTCAATCT+GGG | 0.548436 | 8.3:+7556292 | None:intergenic |
| CATGGTTGTTCAAGCTACTC+AGG | 0.549504 | 8.3:-7553010 | MS.gene58924:intron |
| GTATCAGAAAGCCAGAAATA+CGG | 0.550244 | 8.3:-7553433 | MS.gene58924:CDS |
| TAGGCAGGACTCCAAACAAA+TGG | 0.551437 | 8.3:-7561986 | MS.gene58924:CDS |
| AGAATATGAAATAGGGACAC+GGG | 0.551820 | 8.3:+7562047 | None:intergenic |
| GTTCTTGCTGGTACCAAGGA+AGG | 0.552113 | 8.3:-7555471 | MS.gene58924:CDS |
| ATACCTGTGCAACATCAGCT+GGG | 0.552409 | 8.3:+7550679 | None:intergenic |
| CAAGGCTTCTACCATTTCCA+TGG | 0.555139 | 8.3:+7567248 | None:intergenic |
| GGGATCCTCTAAATTTGCAA+TGG | 0.556861 | 8.3:+7553140 | None:intergenic |
| AAACAAAATGCAGAAGTGTA+CGG | 0.559214 | 8.3:-7550715 | MS.gene58924:intron |
| CCAGAAATACGGAGATAACT+CGG | 0.563831 | 8.3:-7553422 | MS.gene58924:CDS |
| GGAAGAGCTAGCCTGACCAC+CGG | 0.565756 | 8.3:+7553119 | None:intergenic |
| AACTCTCTCTTTGAAAACCA+TGG | 0.566023 | 8.3:+7556352 | None:intergenic |
| GTAGAATACTTAGAACATGT+TGG | 0.571317 | 8.3:-7556328 | MS.gene58924:CDS |
| CTTAGAGAGCTTATGCACAA+TGG | 0.573435 | 8.3:-7554546 | MS.gene58924:CDS |
| TGGTGAGATACAGAAATGCA+TGG | 0.576778 | 8.3:-7550601 | MS.gene58924:CDS |
| GACTTAAAGGAGGCCTCCAG+TGG | 0.577399 | 8.3:-7561512 | MS.gene58924:CDS |
| TGAAGGAGTCTGAGCTAGGT+AGG | 0.577749 | 8.3:+7550546 | None:intergenic |
| TGACCGCTTGCCTTTAACCG+TGG | 0.577890 | 8.3:+7556828 | None:intergenic |
| TCATTTGTGCAGTTCAGTGA+AGG | 0.577897 | 8.3:-7558560 | MS.gene58924:CDS |
| AAATTCACCTTCTGAATACC+AGG | 0.578589 | 8.3:+7567890 | None:intergenic |
| CATCACCCAATCTGAAAAGT+GGG | 0.578815 | 8.3:-7561858 | MS.gene58924:CDS |
| ATTGCAAATTTAGAGGATCC+CGG | 0.580743 | 8.3:-7553138 | MS.gene58924:CDS |
| TAGAGTCATCGACTGAAAGC+CGG | 0.581077 | 8.3:+7552129 | None:intergenic |
| CATGCTGGTCAAACTGAACC+CGG | 0.582887 | 8.3:+7555334 | None:intergenic |
| TGGCATCTGACTTCTCACTT+GGG | 0.583323 | 8.3:+7554481 | None:intergenic |
| CCAGATTGACTCGTATTGAG+TGG | 0.583650 | 8.3:-7556291 | MS.gene58924:CDS |
| AAGACAAGGGAGATTCATGA+TGG | 0.583960 | 8.3:-7555387 | MS.gene58924:CDS |
| TGAAGTTCTTGCTGGTACCA+AGG | 0.587865 | 8.3:-7555475 | MS.gene58924:CDS |
| ACAATGAGATATGAGTTCTG+AGG | 0.588292 | 8.3:+7551953 | None:intergenic |
| TACTTAGAACATGTTGGACT+GGG | 0.589292 | 8.3:-7556322 | MS.gene58924:CDS |
| TTGTCATTTGGCTTTCCCCG+TGG | 0.590049 | 8.3:+7564374 | None:intergenic |
| GGCATACTTGTCTCTTCCAG+AGG | 0.594396 | 8.3:-7565443 | MS.gene58924:CDS |
| GAAGAGCTAGCCTGACCACC+GGG | 0.595145 | 8.3:+7553120 | None:intergenic |
| AATAGGCAGAAGGCTAGTCC+TGG | 0.595746 | 8.3:-7567908 | MS.gene58924:CDS |
| ATATCGTTGACAAAGCAGAA+AGG | 0.598224 | 8.3:-7556741 | MS.gene58924:CDS |
| ATTCCTCCAGTATGATGCGA+TGG | 0.600268 | 8.3:+7556561 | None:intergenic |
| ATGGTGTCTTATCAGAGACA+TGG | 0.600547 | 8.3:+7554596 | None:intergenic |
| TGTTGACCATTGTAGATACC+GGG | 0.601453 | 8.3:-7555352 | MS.gene58924:CDS |
| GGCTAGTCCTGGTATTCAGA+AGG | 0.601808 | 8.3:-7567897 | MS.gene58924:intron |
| AAGCAAGGTTGAAAGAGTTG+AGG | 0.603856 | 8.3:-7552174 | MS.gene58924:CDS |
| TCATCTGATGCAACGGAATG+TGG | 0.605010 | 8.3:+7564314 | None:intergenic |
| GCAACCATCATCTGATGCAA+CGG | 0.606972 | 8.3:+7564307 | None:intergenic |
| ATCATACTGGAGGAATAGTA+CGG | 0.608135 | 8.3:-7556554 | MS.gene58924:CDS |
| TTGCTATTCATCCAAAGACA+AGG | 0.608201 | 8.3:-7555401 | MS.gene58924:CDS |
| TGCTATTCATCCAAAGACAA+GGG | 0.608809 | 8.3:-7555400 | MS.gene58924:CDS |
| CAGTTCAAGAAAATCGGGCA+AGG | 0.610014 | 8.3:-7558498 | MS.gene58924:CDS |
| ATTCAACCCCAAGTTCATGC+TGG | 0.612807 | 8.3:+7555319 | None:intergenic |
| CCAGAAACAAACCCTGACAC+TGG | 0.613482 | 8.3:-7560105 | MS.gene58924:intron |
| TACCTGTGCAACATCAGCTG+GGG | 0.616593 | 8.3:+7550680 | None:intergenic |
| AATTGCATTAGCATTATCAG+AGG | 0.618027 | 8.3:-7561938 | MS.gene58924:CDS |
| TAGAATATGAAATAGGGACA+CGG | 0.618389 | 8.3:+7562046 | None:intergenic |
| GGCATCTGACTTCTCACTTG+GGG | 0.618633 | 8.3:+7554482 | None:intergenic |
| CAAATCACAAGCAAAAGTTG+CGG | 0.619381 | 8.3:-7553748 | MS.gene58924:CDS |
| TCTATTGGCAAAGATAATGA+GGG | 0.622126 | 8.3:-7562027 | MS.gene58924:CDS |
| TGGTGTCTTATCAGAGACAT+GGG | 0.624605 | 8.3:+7554597 | None:intergenic |
| TACCGGCAAGAATAGGCAGA+AGG | 0.627607 | 8.3:-7567918 | MS.gene58924:CDS |
| GGTGAGATACAGAAATGCAT+GGG | 0.628850 | 8.3:-7550600 | MS.gene58924:CDS |
| ACTTGGGGTTGAATTTGTCA+TGG | 0.632591 | 8.3:-7555310 | MS.gene58924:intron |
| TAAATGCCTTACCAGTGTCA+GGG | 0.634335 | 8.3:+7560094 | None:intergenic |
| ATATGGGAAAGATTGGAAGA+AGG | 0.634909 | 8.3:-7567520 | MS.gene58924:intron |
| AGATACTGCTCCCAAAGCAG+AGG | 0.637946 | 8.3:-7558459 | MS.gene58924:CDS |
| TGGCTGCAAACTGGTGACAG+CGG | 0.639746 | 8.3:+7550650 | None:intergenic |
| GATACTGCTCCCAAAGCAGA+GGG | 0.640638 | 8.3:-7558458 | MS.gene58924:CDS |
| TACATCGTAGGTTACTGATG+AGG | 0.643727 | 8.3:-7556860 | MS.gene58924:intron |
| ATCGTTGACAAAGCAGAAAG+GGG | 0.645016 | 8.3:-7556739 | MS.gene58924:CDS |
| TCAGAGGCTTCACAGAGAGG+TGG | 0.645463 | 8.3:-7561922 | MS.gene58924:CDS |
| CTGAGTAGCTTGAACAACCA+TGG | 0.645469 | 8.3:+7553011 | None:intergenic |
| TAGAAGAAAAGCCCGAACCA+TGG | 0.646018 | 8.3:-7553028 | MS.gene58924:CDS |
| AATCCATCGCATCATACTGG+AGG | 0.648435 | 8.3:-7556564 | MS.gene58924:CDS |
| ACATAAACTTAATCAGTACC+GGG | 0.650723 | 8.3:-7555520 | MS.gene58924:CDS |
| ACTGAACCCGGTATCTACAA+TGG | 0.651577 | 8.3:+7555346 | None:intergenic |
| ACCTGTGCAACATCAGCTGG+GGG | 0.653849 | 8.3:+7550681 | None:intergenic |
| TGCAGTACGTAATAGGACCA+TGG | 0.653882 | 8.3:-7567265 | MS.gene58924:CDS |
| AGTGTGAGGTCTTCTTACAA+GGG | 0.653978 | 8.3:-7561422 | MS.gene58924:CDS |
| GCATTTGAATGACTTAAAGG+AGG | 0.659228 | 8.3:-7561522 | MS.gene58924:CDS |
| TGGCAGGGAGGAAGTGACAG+TGG | 0.659370 | 8.3:-7564446 | MS.gene58924:intron |
| GAAGTTTCGCAAATCTGACA+TGG | 0.660309 | 8.3:-7561714 | MS.gene58924:CDS |
| GAGGTTCTCTAATATTCGTG+AGG | 0.661488 | 8.3:-7567972 | MS.gene58924:CDS |
| AGTCCACGGTTAAAGGCAAG+CGG | 0.668120 | 8.3:-7556831 | MS.gene58924:CDS |
| GCATACTTGTCTCTTCCAGA+GGG | 0.673500 | 8.3:-7565442 | MS.gene58924:CDS |
| AGCACTATAAAACCATTCAG+AGG | 0.676314 | 8.3:+7556384 | None:intergenic |
| TTATCAGAGGCTTCACAGAG+AGG | 0.676499 | 8.3:-7561925 | MS.gene58924:CDS |
| AGCCTTGTACACTAAGAACA+GGG | 0.682265 | 8.3:-7567232 | MS.gene58924:intron |
| CCGATATGTTAGGACCACAA+TGG | 0.682677 | 8.3:-7567584 | MS.gene58924:CDS |
| AGCTCCGCCTTACTCCATTG+TGG | 0.688593 | 8.3:+7567570 | None:intergenic |
| CTGCTTACATGCATAGCAGG+TGG | 0.693143 | 8.3:+7554441 | None:intergenic |
| TGATGAGGTGAAGAAGTCCA+CGG | 0.695386 | 8.3:-7556845 | MS.gene58924:CDS |
| GTCTGTCTTCACATCAAACG+CGG | 0.697708 | 8.3:-7556417 | MS.gene58924:CDS |
| AGATTGACTCGTATTGAGTG+GGG | 0.698291 | 8.3:-7556289 | MS.gene58924:CDS |
| AGGACCACAATGGAGTAAGG+CGG | 0.703268 | 8.3:-7567574 | MS.gene58924:CDS |
| ACTGAAGCACATGAATGATG+GGG | 0.703661 | 8.3:-7553455 | MS.gene58924:CDS |
| GGGCTTCAATGACAAAACTG+AGG | 0.705815 | 8.3:+7553161 | None:intergenic |
| GAATATGAAATAGGGACACG+GGG | 0.712256 | 8.3:+7562048 | None:intergenic |
| AATGAGATATGAGTTCTGAG+GGG | 0.770793 | 8.3:+7551955 | None:intergenic |
| GCAAATTTAGAGGATCCCGG+TGG | 0.773825 | 8.3:-7553135 | MS.gene58924:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 7550560 | 7568029 | 7550560 | ID=MS.gene58924 |
| chr8.3 | mRNA | 7550560 | 7568029 | 7550560 | ID=MS.gene58924.t1;Parent=MS.gene58924 |
| chr8.3 | exon | 7567898 | 7568029 | 7567898 | ID=MS.gene58924.t1.exon1;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7567898 | 7568029 | 7567898 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7567521 | 7567619 | 7567521 | ID=MS.gene58924.t1.exon2;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7567521 | 7567619 | 7567521 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7567233 | 7567295 | 7567233 | ID=MS.gene58924.t1.exon3;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7567233 | 7567295 | 7567233 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7565387 | 7565464 | 7565387 | ID=MS.gene58924.t1.exon4;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7565387 | 7565464 | 7565387 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7564279 | 7564462 | 7564279 | ID=MS.gene58924.t1.exon5;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7564279 | 7564462 | 7564279 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7561852 | 7562102 | 7561852 | ID=MS.gene58924.t1.exon6;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7561852 | 7562102 | 7561852 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7561384 | 7561762 | 7561384 | ID=MS.gene58924.t1.exon7;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7561384 | 7561762 | 7561384 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7560106 | 7560183 | 7560106 | ID=MS.gene58924.t1.exon8;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7560106 | 7560183 | 7560106 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7558400 | 7558584 | 7558400 | ID=MS.gene58924.t1.exon9;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7558400 | 7558584 | 7558400 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7558228 | 7558278 | 7558228 | ID=MS.gene58924.t1.exon10;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7558228 | 7558278 | 7558228 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7556543 | 7556872 | 7556543 | ID=MS.gene58924.t1.exon11;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7556543 | 7556872 | 7556543 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7556277 | 7556455 | 7556277 | ID=MS.gene58924.t1.exon12;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7556277 | 7556455 | 7556277 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7555311 | 7555593 | 7555311 | ID=MS.gene58924.t1.exon13;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7555311 | 7555593 | 7555311 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7554449 | 7554658 | 7554449 | ID=MS.gene58924.t1.exon14;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7554449 | 7554658 | 7554449 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7553626 | 7553787 | 7553626 | ID=MS.gene58924.t1.exon15;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7553626 | 7553787 | 7553626 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7553351 | 7553494 | 7553351 | ID=MS.gene58924.t1.exon16;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7553351 | 7553494 | 7553351 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7553011 | 7553235 | 7553011 | ID=MS.gene58924.t1.exon17;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7553011 | 7553235 | 7553011 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7551929 | 7552222 | 7551929 | ID=MS.gene58924.t1.exon18;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7551929 | 7552222 | 7551929 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| chr8.3 | exon | 7550560 | 7550724 | 7550560 | ID=MS.gene58924.t1.exon19;Parent=MS.gene58924.t1 |
| chr8.3 | CDS | 7550560 | 7550724 | 7550560 | ID=cds.MS.gene58924.t1;Parent=MS.gene58924.t1 |
| Gene Sequence |
| Protein sequence |
