Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58964.t1 | XP_003614339.1 | 98.2 | 335 | 6 | 0 | 1 | 335 | 1 | 335 | 2.20E-181 | 644.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58964.t1 | Q9CAA4 | 52.7 | 334 | 133 | 5 | 1 | 333 | 1 | 310 | 6.2e-84 | 312.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58964.t1 | G7JZB3 | 98.2 | 335 | 6 | 0 | 1 | 335 | 1 | 335 | 1.6e-181 | 644.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58964.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58964.t1 | MTR_5g048350 | 98.209 | 335 | 6 | 0 | 1 | 335 | 1 | 335 | 0.0 | 687 |
| MS.gene58964.t1 | MTR_5g048350 | 95.522 | 335 | 6 | 1 | 1 | 335 | 1 | 326 | 0.0 | 660 |
| MS.gene58964.t1 | MTR_4g110040 | 47.531 | 324 | 131 | 11 | 35 | 332 | 124 | 434 | 1.95e-79 | 249 |
| MS.gene58964.t1 | MTR_4g110040 | 47.531 | 324 | 131 | 11 | 35 | 332 | 256 | 566 | 7.08e-78 | 249 |
| MS.gene58964.t1 | MTR_7g017320 | 41.613 | 310 | 150 | 7 | 41 | 332 | 47 | 343 | 4.14e-59 | 194 |
| MS.gene58964.t1 | MTR_7g017320 | 46.821 | 173 | 79 | 3 | 41 | 213 | 47 | 206 | 2.94e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58964.t1 | AT1G69010 | 52.695 | 334 | 133 | 5 | 1 | 333 | 1 | 310 | 1.05e-112 | 330 |
| MS.gene58964.t1 | AT5G08130 | 39.313 | 262 | 118 | 7 | 46 | 303 | 158 | 382 | 4.75e-49 | 169 |
| MS.gene58964.t1 | AT5G08130 | 38.931 | 262 | 120 | 7 | 46 | 303 | 158 | 383 | 3.09e-48 | 167 |
| MS.gene58964.t1 | AT5G08130 | 39.382 | 259 | 122 | 6 | 46 | 303 | 278 | 502 | 1.27e-47 | 168 |
| MS.gene58964.t1 | AT5G08130 | 39.382 | 259 | 122 | 6 | 46 | 303 | 282 | 506 | 1.32e-47 | 168 |
| MS.gene58964.t1 | AT5G38860 | 36.656 | 311 | 163 | 6 | 27 | 332 | 16 | 297 | 5.92e-47 | 161 |
| MS.gene58964.t1 | AT5G08130 | 38.996 | 259 | 124 | 6 | 46 | 303 | 278 | 503 | 9.07e-47 | 166 |
| MS.gene58964.t1 | AT5G08130 | 38.996 | 259 | 124 | 6 | 46 | 303 | 278 | 503 | 9.07e-47 | 166 |
| MS.gene58964.t1 | AT5G08130 | 38.636 | 264 | 128 | 6 | 41 | 303 | 273 | 503 | 9.55e-47 | 166 |
| MS.gene58964.t1 | AT5G08130 | 38.996 | 259 | 124 | 6 | 46 | 303 | 282 | 507 | 1.14e-46 | 166 |
| MS.gene58964.t1 | AT5G38860 | 45.963 | 161 | 75 | 2 | 27 | 185 | 16 | 166 | 1.95e-35 | 128 |
Find 82 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCGTGATCTATCATATTA+TGG | 0.225408 | 5.2:+38790648 | None:intergenic |
| GAGGTTGACCGACAAAATTT+TGG | 0.267640 | 5.2:+38790765 | None:intergenic |
| TGTACTTTCCCATCCTCTTC+AGG | 0.272008 | 5.2:-38790510 | MS.gene58964:CDS |
| GTATGAGATCCCTCAATATT+TGG | 0.276214 | 5.2:+38791769 | None:intergenic |
| AGGGTACCTTTGTTGGTGTT+AGG | 0.276576 | 5.2:+38793667 | None:intergenic |
| CACAGCTTCATTCTTATTAG+AGG | 0.312925 | 5.2:-38791724 | MS.gene58964:intron |
| GGGTACCTTTGTTGGTGTTA+GGG | 0.323081 | 5.2:+38793668 | None:intergenic |
| GGCGGAGAGGCAACCTGATT+TGG | 0.323743 | 5.2:-38790600 | MS.gene58964:CDS |
| ATTTCAGTTCAAATTGATCT+TGG | 0.329165 | 5.2:-38788201 | MS.gene58964:CDS |
| CCTGAACCATTCTTTACAAT+TGG | 0.334279 | 5.2:+38790743 | None:intergenic |
| TTTCCGGGAAACGGTGATAC+TGG | 0.349733 | 5.2:+38790719 | None:intergenic |
| ATTCCCTTGCTCGCCAAATC+AGG | 0.384265 | 5.2:+38790587 | None:intergenic |
| TTAAGGAAGGGTACCTTTGT+TGG | 0.391183 | 5.2:+38793660 | None:intergenic |
| TGAGTATGTTCAGTACTTAC+AGG | 0.412725 | 5.2:-38791600 | MS.gene58964:CDS |
| GGTGTTAGGGGCAGAGGAAG+TGG | 0.420329 | 5.2:+38793681 | None:intergenic |
| TGGGAGCCACTAAGCATTGT+TGG | 0.420920 | 5.2:+38790668 | None:intergenic |
| ATCTCTCCAACAATGCTTAG+TGG | 0.434167 | 5.2:-38790674 | MS.gene58964:CDS |
| ATCGTGATCTATCATATTAT+GGG | 0.435013 | 5.2:+38790649 | None:intergenic |
| GTACTTTCCCATCCTCTTCA+GGG | 0.437126 | 5.2:-38790509 | MS.gene58964:CDS |
| TTTCAGTTCAAATTGATCTT+GGG | 0.437219 | 5.2:-38788200 | MS.gene58964:CDS |
| CCAATTGTAAAGAATGGTTC+AGG | 0.442919 | 5.2:-38790743 | MS.gene58964:CDS |
| CCTTCAGATTCCAAATATTG+AGG | 0.448909 | 5.2:-38791779 | MS.gene58964:intron |
| CTTCAGATTCCAAATATTGA+GGG | 0.451155 | 5.2:-38791778 | MS.gene58964:intron |
| TCATCAAACTTTCCGGGAAA+CGG | 0.451349 | 5.2:+38790710 | None:intergenic |
| GAACCATTCTTTACAATTGG+AGG | 0.459728 | 5.2:+38790746 | None:intergenic |
| CAGGATGAACTTACAGTTGA+AGG | 0.460627 | 5.2:-38790428 | MS.gene58964:CDS |
| GGAGATGAGGCTGTGCCACT+TGG | 0.463787 | 5.2:+38788159 | None:intergenic |
| CAACTGTAAGTTCATCCTGC+TGG | 0.473427 | 5.2:+38790432 | None:intergenic |
| ACTCAAGCGCTACAGAGTGC+TGG | 0.475738 | 5.2:-38788246 | MS.gene58964:CDS |
| GGTCCAGTATCACCGTTTCC+CGG | 0.476824 | 5.2:-38790722 | MS.gene58964:CDS |
| CAACCTCCAATTGTAAAGAA+TGG | 0.480239 | 5.2:-38790749 | MS.gene58964:CDS |
| TTTGTTGGTGTTAGGGGCAG+AGG | 0.484917 | 5.2:+38793675 | None:intergenic |
| AAATATGAAGGCTCGTATCA+AGG | 0.490493 | 5.2:-38791566 | MS.gene58964:CDS |
| GCAACCTGATTTGGCGAGCA+AGG | 0.490959 | 5.2:-38790591 | MS.gene58964:CDS |
| TGATAGATCACGATCCGACT+CGG | 0.499986 | 5.2:-38790640 | MS.gene58964:CDS |
| CAAGGGAATTCCTCTGCCTA+TGG | 0.504233 | 5.2:-38790573 | MS.gene58964:CDS |
| TCTTGGGAAGCGTGCAAAGA+AGG | 0.509091 | 5.2:-38788184 | MS.gene58964:CDS |
| TTGAGTTGTTCACTCGTTGT+GGG | 0.512133 | 5.2:+38790455 | None:intergenic |
| ATGAAGGCTCGTATCAAGGC+TGG | 0.517535 | 5.2:-38791562 | MS.gene58964:CDS |
| GGTACCTTTGTTGGTGTTAG+GGG | 0.522122 | 5.2:+38793669 | None:intergenic |
| CTCAAGCGCTACAGAGTGCT+GGG | 0.524190 | 5.2:-38788245 | MS.gene58964:CDS |
| TACCTCAATGCGATCAAAAG+AGG | 0.538263 | 5.2:-38791749 | MS.gene58964:CDS |
| TTGCCTACAACAATGAAAGC+AGG | 0.539094 | 5.2:-38793766 | None:intergenic |
| GATAGATCACGATCCGACTC+GGG | 0.540435 | 5.2:-38790639 | MS.gene58964:CDS |
| AGATGGGAAAGCTACTGATA+AGG | 0.542435 | 5.2:-38792540 | MS.gene58964:CDS |
| AAACAGTTCCCTGAAGAGGA+TGG | 0.542486 | 5.2:+38790501 | None:intergenic |
| GTTGAGTTGTTCACTCGTTG+TGG | 0.544799 | 5.2:+38790454 | None:intergenic |
| AACCGTCGAAGTTGATGCCA+TGG | 0.544835 | 5.2:-38791532 | MS.gene58964:CDS |
| TCTGTTCCTGTCAGAAGTGA+TGG | 0.550958 | 5.2:-38790533 | MS.gene58964:CDS |
| AATGATTGATTGCTACAAAG+AGG | 0.557171 | 5.2:+38786881 | None:intergenic |
| ACCCATGGCATCAACTTCGA+CGG | 0.559522 | 5.2:+38791530 | None:intergenic |
| TCTGTATACCTTGGGAGATG+AGG | 0.560824 | 5.2:+38788146 | None:intergenic |
| AACAGTTCCCTGAAGAGGAT+GGG | 0.561389 | 5.2:+38790502 | None:intergenic |
| ATCTCGAGTGTATACTCCCA+AGG | 0.571871 | 5.2:-38790392 | MS.gene58964:CDS |
| ATGATTGATTGCTACAAAGA+GGG | 0.583430 | 5.2:+38786882 | None:intergenic |
| ACATTCAGTTGATTGTGCAT+CGG | 0.585244 | 5.2:+38790478 | None:intergenic |
| ATGTTTGCATGCATAGCCAT+AGG | 0.589737 | 5.2:+38790557 | None:intergenic |
| GATCCGACTCGGGATATTGT+CGG | 0.590573 | 5.2:-38790629 | MS.gene58964:CDS |
| CAACCTGATTTGGCGAGCAA+GGG | 0.591521 | 5.2:-38790590 | MS.gene58964:CDS |
| GAAGAAGCAAGATAAATGAG+AGG | 0.595996 | 5.2:-38792475 | MS.gene58964:intron |
| TCGGAAACAGTTCCCTGAAG+AGG | 0.597102 | 5.2:+38790497 | None:intergenic |
| TGCCTACAACAATGAAAGCA+GGG | 0.600473 | 5.2:-38793765 | None:intergenic |
| GAGTGAACAACTCAACCAGC+AGG | 0.605106 | 5.2:-38790447 | MS.gene58964:CDS |
| GCATGCATAGCCATAGGCAG+AGG | 0.609045 | 5.2:+38790563 | None:intergenic |
| AGTACACCATCACTTCTGAC+AGG | 0.614723 | 5.2:+38790527 | None:intergenic |
| ACCTCAATGCGATCAAAAGA+GGG | 0.615266 | 5.2:-38791748 | MS.gene58964:CDS |
| TCGGGATATTGTCGGCAAGA+CGG | 0.618174 | 5.2:-38790621 | MS.gene58964:CDS |
| AACATTCTGTAACGGAGCAG+CGG | 0.620536 | 5.2:-38792499 | MS.gene58964:CDS |
| TGGCACAGCCTCATCTCCCA+AGG | 0.623367 | 5.2:-38788154 | MS.gene58964:intron |
| ACCGTCGAAGTTGATGCCAT+GGG | 0.624180 | 5.2:-38791531 | MS.gene58964:intron |
| AAGATCGAAACATTCTGTAA+CGG | 0.625212 | 5.2:-38792507 | MS.gene58964:CDS |
| ATGTTCAGTACTTACAGGAG+AGG | 0.638295 | 5.2:-38791595 | MS.gene58964:CDS |
| TGCTGGGTTAGATCTGTCAA+AGG | 0.641347 | 5.2:-38788229 | MS.gene58964:CDS |
| GATGAACTTACAGTTGAAGG+AGG | 0.651861 | 5.2:-38790425 | MS.gene58964:CDS |
| TGTTCAGTACTTACAGGAGA+GGG | 0.653015 | 5.2:-38791594 | MS.gene58964:CDS |
| TCTCGAGTGTATACTCCCAA+GGG | 0.653032 | 5.2:-38790391 | MS.gene58964:intron |
| GGATATTGTCGGCAAGACGG+CGG | 0.664149 | 5.2:-38790618 | MS.gene58964:CDS |
| ATGAACTTACAGTTGAAGGA+GGG | 0.671653 | 5.2:-38790424 | MS.gene58964:CDS |
| TTGCCGACAATATCCCGAGT+CGG | 0.672673 | 5.2:+38790626 | None:intergenic |
| TTGTCGGCAAGACGGCGGAG+AGG | 0.684251 | 5.2:-38790613 | MS.gene58964:CDS |
| TCTGCCCCTAACACCAACAA+AGG | 0.684939 | 5.2:-38793673 | MS.gene58964:intron |
| CGTGCAAAGAAGGATCCAAG+TGG | 0.732676 | 5.2:-38788174 | MS.gene58964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 38786808 | 38793776 | 38786808 | ID=MS.gene58964 |
| chr5.2 | mRNA | 38786808 | 38793776 | 38786808 | ID=MS.gene58964.t1;Parent=MS.gene58964 |
| chr5.2 | exon | 38793674 | 38793776 | 38793674 | ID=MS.gene58964.t1.exon1;Parent=MS.gene58964.t1 |
| chr5.2 | CDS | 38793674 | 38793776 | 38793674 | ID=cds.MS.gene58964.t1;Parent=MS.gene58964.t1 |
| chr5.2 | exon | 38792476 | 38792560 | 38792476 | ID=MS.gene58964.t1.exon2;Parent=MS.gene58964.t1 |
| chr5.2 | CDS | 38792476 | 38792560 | 38792476 | ID=cds.MS.gene58964.t1;Parent=MS.gene58964.t1 |
| chr5.2 | exon | 38791725 | 38791794 | 38791725 | ID=MS.gene58964.t1.exon3;Parent=MS.gene58964.t1 |
| chr5.2 | CDS | 38791725 | 38791794 | 38791725 | ID=cds.MS.gene58964.t1;Parent=MS.gene58964.t1 |
| chr5.2 | exon | 38791532 | 38791627 | 38791532 | ID=MS.gene58964.t1.exon4;Parent=MS.gene58964.t1 |
| chr5.2 | CDS | 38791532 | 38791627 | 38791532 | ID=cds.MS.gene58964.t1;Parent=MS.gene58964.t1 |
| chr5.2 | exon | 38790392 | 38790807 | 38790392 | ID=MS.gene58964.t1.exon5;Parent=MS.gene58964.t1 |
| chr5.2 | CDS | 38790392 | 38790807 | 38790392 | ID=cds.MS.gene58964.t1;Parent=MS.gene58964.t1 |
| chr5.2 | exon | 38788155 | 38788284 | 38788155 | ID=MS.gene58964.t1.exon6;Parent=MS.gene58964.t1 |
| chr5.2 | CDS | 38788155 | 38788284 | 38788155 | ID=cds.MS.gene58964.t1;Parent=MS.gene58964.t1 |
| chr5.2 | exon | 38786808 | 38786915 | 38786808 | ID=MS.gene58964.t1.exon7;Parent=MS.gene58964.t1 |
| chr5.2 | CDS | 38786808 | 38786915 | 38786808 | ID=cds.MS.gene58964.t1;Parent=MS.gene58964.t1 |
| Gene Sequence |
| Protein sequence |