Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59015.t1 | RHN80703.1 | 78.8 | 595 | 89 | 4 | 1 | 562 | 87 | 677 | 9.90E-259 | 902.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59015.t1 | F4K493 | 31.4 | 749 | 311 | 16 | 4 | 561 | 98 | 834 | 8.7e-78 | 292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59015.t1 | A0A072VN36 | 78.8 | 595 | 89 | 4 | 1 | 562 | 100 | 690 | 7.1e-259 | 902.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59015.t1 | TR | SNF2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59015.t1 | MTR_1g081750 | 78.824 | 595 | 89 | 4 | 1 | 562 | 100 | 690 | 0.0 | 939 |
| MS.gene59015.t1 | MTR_7g026650 | 51.777 | 647 | 218 | 18 | 2 | 561 | 87 | 726 | 0.0 | 571 |
| MS.gene59015.t1 | MTR_3g071860 | 50.620 | 484 | 176 | 11 | 142 | 562 | 356 | 839 | 3.20e-135 | 424 |
| MS.gene59015.t1 | MTR_3g071860 | 66.667 | 150 | 47 | 2 | 1 | 147 | 102 | 251 | 1.28e-55 | 203 |
| MS.gene59015.t1 | MTR_5g083300 | 47.429 | 350 | 144 | 5 | 251 | 561 | 563 | 911 | 2.78e-87 | 295 |
| MS.gene59015.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 141 | 294 | 5.54e-25 | 110 |
| MS.gene59015.t1 | MTR_5g083300 | 47.429 | 350 | 144 | 5 | 251 | 561 | 526 | 874 | 3.22e-87 | 294 |
| MS.gene59015.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 104 | 257 | 6.53e-25 | 110 |
| MS.gene59015.t1 | MTR_7g026620 | 42.998 | 407 | 138 | 14 | 140 | 532 | 11 | 337 | 4.60e-79 | 261 |
| MS.gene59015.t1 | MTR_7g450860 | 39.899 | 198 | 108 | 3 | 303 | 494 | 596 | 788 | 5.39e-42 | 162 |
| MS.gene59015.t1 | MTR_7g029525 | 41.989 | 181 | 103 | 2 | 318 | 497 | 662 | 841 | 2.33e-41 | 160 |
| MS.gene59015.t1 | MTR_7g450780 | 43.085 | 188 | 93 | 5 | 318 | 497 | 667 | 848 | 1.47e-40 | 158 |
| MS.gene59015.t1 | MTR_7g450820 | 41.622 | 185 | 98 | 3 | 318 | 497 | 567 | 746 | 3.00e-40 | 157 |
| MS.gene59015.t1 | MTR_7g050445 | 41.711 | 187 | 97 | 5 | 318 | 497 | 630 | 811 | 9.38e-40 | 155 |
| MS.gene59015.t1 | MTR_4g088650 | 40.761 | 184 | 101 | 3 | 318 | 497 | 578 | 757 | 1.85e-39 | 155 |
| MS.gene59015.t1 | MTR_7g450790 | 40.437 | 183 | 101 | 3 | 319 | 497 | 778 | 956 | 3.12e-38 | 151 |
| MS.gene59015.t1 | MTR_2g437480 | 32.381 | 210 | 113 | 6 | 305 | 508 | 416 | 602 | 3.41e-25 | 111 |
| MS.gene59015.t1 | MTR_8g037345 | 32.474 | 194 | 105 | 6 | 318 | 508 | 282 | 452 | 2.56e-24 | 108 |
| MS.gene59015.t1 | MTR_7g026550 | 33.065 | 248 | 82 | 8 | 294 | 540 | 18 | 182 | 3.25e-23 | 102 |
| MS.gene59015.t1 | MTR_3g084600 | 46.281 | 121 | 33 | 3 | 320 | 440 | 16 | 104 | 2.45e-20 | 89.4 |
| MS.gene59015.t1 | MTR_4g032945 | 60.417 | 48 | 19 | 0 | 1 | 48 | 1 | 48 | 4.40e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59015.t1 | AT5G20420 | 42.693 | 349 | 161 | 6 | 252 | 561 | 486 | 834 | 4.94e-77 | 265 |
| MS.gene59015.t1 | AT5G20420 | 37.654 | 162 | 88 | 4 | 3 | 163 | 97 | 246 | 4.45e-23 | 104 |
| MS.gene59015.t1 | AT3G42670 | 42.286 | 350 | 162 | 7 | 251 | 561 | 480 | 828 | 3.90e-75 | 260 |
| MS.gene59015.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.81e-19 | 91.3 |
| MS.gene59015.t1 | AT3G42670 | 42.286 | 350 | 162 | 7 | 251 | 561 | 480 | 828 | 3.90e-75 | 260 |
| MS.gene59015.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.81e-19 | 91.3 |
| MS.gene59015.t1 | AT3G42670 | 42.286 | 350 | 162 | 7 | 251 | 561 | 480 | 828 | 3.90e-75 | 260 |
| MS.gene59015.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.81e-19 | 91.3 |
| MS.gene59015.t1 | AT3G42670 | 51.406 | 249 | 115 | 4 | 318 | 561 | 583 | 830 | 8.38e-75 | 259 |
| MS.gene59015.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.54e-19 | 91.3 |
| MS.gene59015.t1 | AT1G05490 | 37.838 | 185 | 103 | 4 | 320 | 497 | 736 | 915 | 3.53e-36 | 145 |
| MS.gene59015.t1 | AT3G24340 | 36.111 | 180 | 111 | 3 | 320 | 497 | 491 | 668 | 2.86e-32 | 133 |
| MS.gene59015.t1 | AT2G16390 | 33.333 | 177 | 98 | 2 | 316 | 492 | 271 | 427 | 1.08e-24 | 109 |
| MS.gene59015.t1 | AT2G16390 | 33.333 | 177 | 98 | 2 | 316 | 492 | 268 | 424 | 1.13e-24 | 109 |
| MS.gene59015.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 316 | 492 | 190 | 346 | 1.46e-21 | 99.8 |
| MS.gene59015.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 316 | 492 | 183 | 339 | 1.63e-21 | 99.4 |
| MS.gene59015.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 316 | 492 | 92 | 248 | 1.86e-21 | 99.4 |
Find 85 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGATACCATTAGAATT+TGG | 0.209817 | 5.3:+37525836 | None:intergenic |
| CCAGGTAGAACCATTGATTT+TGG | 0.226511 | 5.3:+37525863 | None:intergenic |
| TATCGATTGGATGAACAAAT+TGG | 0.242680 | 5.3:-37526719 | MS.gene59015:CDS |
| CCACAATCTAGGTTACTTTC+CGG | 0.284693 | 5.3:-37527812 | MS.gene59015:CDS |
| CAAGATTGTGTATGAAGTTA+TGG | 0.284889 | 5.3:-37527711 | MS.gene59015:CDS |
| CCAAAGAAAATGACAGTGTT+TGG | 0.290902 | 5.3:-37526225 | MS.gene59015:CDS |
| TAATGGTATCAAGCATGATT+TGG | 0.292292 | 5.3:-37525828 | MS.gene59015:CDS |
| TGTTACCGCGTCATCTTTAA+AGG | 0.296633 | 5.3:-37527762 | MS.gene59015:CDS |
| GGTAGGTGGAAAGGCTAAAA+TGG | 0.309089 | 5.3:-37526351 | MS.gene59015:intron |
| TTGAAGTTCAAAACATTCAT+AGG | 0.322383 | 5.3:+37527665 | None:intergenic |
| TCAACTGATGCTACTAATCT+TGG | 0.333239 | 5.3:-37526259 | MS.gene59015:CDS |
| GAGTGGTCCAAAGGTTAATA+AGG | 0.365464 | 5.3:-37527624 | MS.gene59015:CDS |
| CGTCTTTCTTCACTGATAGT+TGG | 0.366946 | 5.3:+37527254 | None:intergenic |
| CCTTCTTCATCACATGATAA+TGG | 0.368117 | 5.3:+37527530 | None:intergenic |
| GCTCTTCATTGCCACAATCT+AGG | 0.368231 | 5.3:-37527823 | MS.gene59015:CDS |
| TAGCCCATGACAAGAACAAT+AGG | 0.384093 | 5.3:+37525770 | None:intergenic |
| TTCATAGGACCACTAATATT+AGG | 0.384672 | 5.3:+37527680 | None:intergenic |
| CATGTGTAGAGTGTGGTCTT+TGG | 0.395080 | 5.3:+37525968 | None:intergenic |
| CACAATCTAGGTTACTTTCC+GGG | 0.397509 | 5.3:-37527811 | MS.gene59015:CDS |
| CCTGGAGTTCCAAATTCTAA+TGG | 0.399610 | 5.3:-37525845 | MS.gene59015:CDS |
| TTGGTGTCGTCGAATGTCTC+TGG | 0.405539 | 5.3:+37525882 | None:intergenic |
| AAGAAAGAGGATAATGTGAT+TGG | 0.408479 | 5.3:-37527959 | MS.gene59015:CDS |
| GTCTTTGGAGCTAGGACTAA+TGG | 0.409580 | 5.3:+37525983 | None:intergenic |
| CACCCTATTGTTCTTGTCAT+GGG | 0.413983 | 5.3:-37525773 | MS.gene59015:CDS |
| CAAAGAAAATGACAGTGTTT+GGG | 0.414944 | 5.3:-37526224 | MS.gene59015:CDS |
| AAGAAAAGAGATGGTGAGAA+AGG | 0.416344 | 5.3:+37526039 | None:intergenic |
| AAGATTGTGTATGAAGTTAT+GGG | 0.424794 | 5.3:-37527710 | MS.gene59015:CDS |
| ATCATGTTCACATGTTTCCT+TGG | 0.426716 | 5.3:+37526742 | None:intergenic |
| GGCAATTATCCTAATATTAG+TGG | 0.431684 | 5.3:-37527689 | MS.gene59015:CDS |
| ACACCCTATTGTTCTTGTCA+TGG | 0.436213 | 5.3:-37525774 | MS.gene59015:CDS |
| GATAATGGAGACTCATTGTA+TGG | 0.461722 | 5.3:+37527545 | None:intergenic |
| ATATCTCATGCTCCTGGAGC+TGG | 0.462480 | 5.3:-37526067 | MS.gene59015:CDS |
| GCGGTTCTGTAAGGAGCATA+TGG | 0.471624 | 5.3:-37527459 | MS.gene59015:CDS |
| TATCGATGATCATAAAGAAC+AGG | 0.472137 | 5.3:-37527372 | MS.gene59015:CDS |
| CCATTAGAATTTGGAACTCC+AGG | 0.476634 | 5.3:+37525845 | None:intergenic |
| AGAGTGTGGTCTTTGGAGCT+AGG | 0.489103 | 5.3:+37525975 | None:intergenic |
| GCAGAAGAAAGAAAACGTAT+TGG | 0.496020 | 5.3:-37527225 | MS.gene59015:CDS |
| AATAAGGAAAATCAGTTGAC+TGG | 0.505533 | 5.3:-37527608 | MS.gene59015:CDS |
| ACGAAGAAGGCGGTTCTGTA+AGG | 0.505948 | 5.3:-37527468 | MS.gene59015:CDS |
| AACTTCAAATCCTGTGATGA+TGG | 0.524328 | 5.3:-37527650 | MS.gene59015:CDS |
| TAACAATTTCTGCACGAAGA+AGG | 0.525323 | 5.3:-37527481 | MS.gene59015:CDS |
| TGTGTTATATCTCATGCTCC+TGG | 0.525908 | 5.3:-37526073 | MS.gene59015:CDS |
| GAAACAAAGCAGTGAACATA+CGG | 0.535472 | 5.3:-37526317 | MS.gene59015:CDS |
| TGGATAAGATACACCGGCAT+GGG | 0.541181 | 5.3:+37525917 | None:intergenic |
| TTGGATCTTCTTCAGATGGT+AGG | 0.545112 | 5.3:+37527273 | None:intergenic |
| ATAGTTGGATCTTCTTCAGA+TGG | 0.550685 | 5.3:+37527269 | None:intergenic |
| GGAAGTAATTGATGCTTACA+TGG | 0.555455 | 5.3:-37527309 | MS.gene59015:CDS |
| AGCATCAATTACTTCCTCGC+AGG | 0.555873 | 5.3:+37527316 | None:intergenic |
| CCAAAATCAATGGTTCTACC+TGG | 0.556365 | 5.3:-37525863 | MS.gene59015:CDS |
| ATATCCAATGGTAGGTGGAA+AGG | 0.558302 | 5.3:-37526360 | MS.gene59015:intron |
| GTCTCTGGCTTCGACAGATG+TGG | 0.558594 | 5.3:+37525897 | None:intergenic |
| TTCGACGACACCAAAATCAA+TGG | 0.558930 | 5.3:-37525873 | MS.gene59015:CDS |
| ACCACTCTTACCATCATCAC+AGG | 0.562701 | 5.3:+37527640 | None:intergenic |
| TGACACAAATAAAGAATCCA+AGG | 0.564564 | 5.3:-37526759 | MS.gene59015:CDS |
| AGCCCATGACAAGAACAATA+GGG | 0.568333 | 5.3:+37525771 | None:intergenic |
| GGTTTCATATGTCATAAGAT+CGG | 0.570324 | 5.3:-37527741 | MS.gene59015:CDS |
| CCATTATCATGTGATGAAGA+AGG | 0.574271 | 5.3:-37527530 | MS.gene59015:CDS |
| AAAATGGAATGTTCCCATGC+CGG | 0.580266 | 5.3:-37525930 | MS.gene59015:CDS |
| CTTCAACGAAATAACTGTGA+AGG | 0.592014 | 5.3:-37527908 | MS.gene59015:CDS |
| ATAACTTACAAGAAAAGAGA+TGG | 0.597163 | 5.3:+37526030 | None:intergenic |
| CCGGAAAGTAACCTAGATTG+TGG | 0.605716 | 5.3:+37527812 | None:intergenic |
| TATGATGATCAAGGTTCACA+TGG | 0.609118 | 5.3:-37528001 | MS.gene59015:CDS |
| GTATACAAAAGATCAAAAGC+AGG | 0.610004 | 5.3:-37525802 | MS.gene59015:CDS |
| GGAATATACTGCCGTACATG+CGG | 0.610029 | 5.3:-37526698 | MS.gene59015:CDS |
| CGTATTGGAAAGCGGTGGTG+AGG | 0.610073 | 5.3:-37527210 | MS.gene59015:intron |
| AGATGACGCGGTAACAAACC+AGG | 0.611437 | 5.3:+37527769 | None:intergenic |
| GCAGGGTGCAAATGCTGATG+AGG | 0.611917 | 5.3:-37526789 | MS.gene59015:intron |
| CAAAGACCACACTCTACACA+TGG | 0.613075 | 5.3:-37525967 | MS.gene59015:CDS |
| AAAATCACACTGAAAGCGCA+TGG | 0.616805 | 5.3:-37525707 | MS.gene59015:CDS |
| CATAAAGAACAGGATCATAG+AGG | 0.617267 | 5.3:-37527362 | MS.gene59015:CDS |
| GTGGATAAGATACACCGGCA+TGG | 0.619432 | 5.3:+37525916 | None:intergenic |
| CAACTATCAGTGAAGAAAGA+CGG | 0.622612 | 5.3:-37527253 | MS.gene59015:CDS |
| GAACATTTATTATATTTGTG+AGG | 0.623911 | 5.3:+37528046 | None:intergenic |
| CAATTTCTGCACGAAGAAGG+CGG | 0.628751 | 5.3:-37527478 | MS.gene59015:CDS |
| ATGTGAACATGATTATCGAT+TGG | 0.633134 | 5.3:-37526732 | MS.gene59015:CDS |
| TGATGGTAAGAGTGGTCCAA+AGG | 0.634249 | 5.3:-37527633 | MS.gene59015:CDS |
| TCCTGTGATGATGGTAAGAG+TGG | 0.654377 | 5.3:-37527641 | MS.gene59015:CDS |
| AAAGAACAGGATCATAGAGG+TGG | 0.669391 | 5.3:-37527359 | MS.gene59015:CDS |
| TAGATTGTGGCAATGAAGAG+CGG | 0.677170 | 5.3:+37527825 | None:intergenic |
| AAAGAAAACGTATTGGAAAG+CGG | 0.682656 | 5.3:-37527218 | MS.gene59015:CDS |
| CAGATGTGGATAAGATACAC+CGG | 0.687722 | 5.3:+37525911 | None:intergenic |
| TTATCATGTGATGAAGAAGG+TGG | 0.694141 | 5.3:-37527527 | MS.gene59015:CDS |
| TGAAACCTTTAAAGATGACG+CGG | 0.702218 | 5.3:+37527757 | None:intergenic |
| GAAAACGTATTGGAAAGCGG+TGG | 0.722789 | 5.3:-37527215 | MS.gene59015:CDS |
| GTTAAATGCTGATACCTGCG+AGG | 0.758695 | 5.3:-37527330 | MS.gene59015:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGACAATTATGATTTAT+AGG | - | chr5.3:37526865-37526884 | MS.gene59015:intron | 15.0% |
| !!! | GATTTAAATACTTTGTTTTT+TGG | - | chr5.3:37526920-37526939 | MS.gene59015:intron | 15.0% |
| !! | GAACATTTATTATATTTGTG+AGG | + | chr5.3:37525745-37525764 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTCAATTTCTT+TGG | - | chr5.3:37527629-37527648 | MS.gene59015:CDS | 20.0% |
| !!! | GTAAAACATTTTATACAGAT+AGG | + | chr5.3:37526770-37526789 | None:intergenic | 20.0% |
| !!! | TAATTACAAGTTTGAAATCA+TGG | + | chr5.3:37527304-37527323 | None:intergenic | 20.0% |
| !!! | TATGGATTCGATAATTTTAT+TGG | - | chr5.3:37526347-37526366 | MS.gene59015:CDS | 20.0% |
| !!! | TGGTTTTATCTTCTATTTTA+AGG | - | chr5.3:37526940-37526959 | MS.gene59015:intron | 20.0% |
| !!! | TTTATTTTCTGTTCTCATTA+AGG | + | chr5.3:37528058-37528077 | None:intergenic | 20.0% |
| ! | AAAACATATCCAACCAAATA+AGG | + | chr5.3:37527344-37527363 | None:intergenic | 25.0% |
| ! | AAGATTGTGTATGAAGTTAT+GGG | - | chr5.3:37526078-37526097 | MS.gene59015:CDS | 25.0% |
| ! | ACAAGTAAAAGACAAGAAAT+GGG | + | chr5.3:37526709-37526728 | None:intergenic | 25.0% |
| ! | ACTGTCAACAAAATCATAAT+CGG | - | chr5.3:37526790-37526809 | MS.gene59015:intron | 25.0% |
| ! | ATAACTTACAAGAAAAGAGA+TGG | + | chr5.3:37527761-37527780 | None:intergenic | 25.0% |
| ! | GTTGTCTAATTTATATCCAA+TGG | - | chr5.3:37527416-37527435 | MS.gene59015:CDS | 25.0% |
| ! | TCTAATTTATATCCAATGGT+AGG | - | chr5.3:37527420-37527439 | MS.gene59015:CDS | 25.0% |
| ! | TTGAAGTTCAAAACATTCAT+AGG | + | chr5.3:37526126-37526145 | None:intergenic | 25.0% |
| !! | AAGTTTCAAAGTGTAACTTT+TGG | + | chr5.3:37527243-37527262 | None:intergenic | 25.0% |
| !! | AATAAAAACTCTGAAGAAAG+AGG | - | chr5.3:37525816-37525835 | MS.gene59015:CDS | 25.0% |
| !! | AGTTTTTACTTGACTTACAA+TGG | + | chr5.3:37527151-37527170 | None:intergenic | 25.0% |
| !! | GTTCAGAAGTTAATTCTTTT+AGG | - | chr5.3:37525923-37525942 | MS.gene59015:CDS | 25.0% |
| !! | GTTTTTACTTGACTTACAAT+GGG | + | chr5.3:37527150-37527169 | None:intergenic | 25.0% |
| !! | TGATTTTCCTTATTAACCTT+TGG | + | chr5.3:37526174-37526193 | None:intergenic | 25.0% |
| !! | TGTAACTTTAGTTCCTTATT+TGG | - | chr5.3:37527328-37527347 | MS.gene59015:CDS | 25.0% |
| !!! | AAGGTGGTTATATTGTTTTT+CGG | - | chr5.3:37526277-37526296 | MS.gene59015:CDS | 25.0% |
| !!! | AGAAGTTAATTCTTTTAGGT+GGG | - | chr5.3:37525927-37525946 | MS.gene59015:CDS | 25.0% |
| !!! | AGTTATTTCGTTGAAGTTTT+TGG | + | chr5.3:37525876-37525895 | None:intergenic | 25.0% |
| !!! | ATCTTCTATTTTAAGGCTAA+AGG | - | chr5.3:37526947-37526966 | MS.gene59015:intron | 25.0% |
| !!! | GAAATTGAAAAGCTTTTTTC+TGG | + | chr5.3:37527627-37527646 | None:intergenic | 25.0% |
| !!! | GTAAAGTTTTATGATGATCA+AGG | - | chr5.3:37525778-37525797 | MS.gene59015:CDS | 25.0% |
| AAAGAAAAATCTGACACAAC+TGG | - | chr5.3:37527688-37527707 | MS.gene59015:CDS | 30.0% | |
| AAAGAAAACGTATTGGAAAG+CGG | - | chr5.3:37526570-37526589 | MS.gene59015:intron | 30.0% | |
| AACTCTTAAATACCATAGCA+GGG | - | chr5.3:37526982-37527001 | MS.gene59015:intron | 30.0% | |
| AAGAAAGAGGATAATGTGAT+TGG | - | chr5.3:37525829-37525848 | MS.gene59015:CDS | 30.0% | |
| AATAAGGAAAATCAGTTGAC+TGG | - | chr5.3:37526180-37526199 | MS.gene59015:CDS | 30.0% | |
| AATTTATATCCAATGGTAGG+TGG | - | chr5.3:37527423-37527442 | MS.gene59015:CDS | 30.0% | |
| ACATCAAGTTATCTTCTTGA+TGG | - | chr5.3:37526654-37526673 | MS.gene59015:intron | 30.0% | |
| ATGTGAACATGATTATCGAT+TGG | - | chr5.3:37527056-37527075 | MS.gene59015:intron | 30.0% | |
| CAAAGAAAATGACAGTGTTT+GGG | - | chr5.3:37527564-37527583 | MS.gene59015:CDS | 30.0% | |
| CAAGATTGTGTATGAAGTTA+TGG | - | chr5.3:37526077-37526096 | MS.gene59015:CDS | 30.0% | |
| GACAAGTAAAAGACAAGAAA+TGG | + | chr5.3:37526710-37526729 | None:intergenic | 30.0% | |
| GACTGACATATAGAAAGAAA+TGG | - | chr5.3:37526620-37526639 | MS.gene59015:intron | 30.0% | |
| GGCAATTATCCTAATATTAG+TGG | - | chr5.3:37526099-37526118 | MS.gene59015:CDS | 30.0% | |
| GGTTTCATATGTCATAAGAT+CGG | - | chr5.3:37526047-37526066 | MS.gene59015:CDS | 30.0% | |
| GTATACAAAAGATCAAAAGC+AGG | - | chr5.3:37527986-37528005 | MS.gene59015:CDS | 30.0% | |
| TAATGGTATCAAGCATGATT+TGG | - | chr5.3:37527960-37527979 | MS.gene59015:CDS | 30.0% | |
| TATATGTCAGTCAAATCATC+AGG | + | chr5.3:37526612-37526631 | None:intergenic | 30.0% | |
| TATCGATGATCATAAAGAAC+AGG | - | chr5.3:37526416-37526435 | MS.gene59015:intron | 30.0% | |
| TGACACAAATAAAGAATCCA+AGG | - | chr5.3:37527029-37527048 | MS.gene59015:intron | 30.0% | |
| TGCTTGATACCATTAGAATT+TGG | + | chr5.3:37527955-37527974 | None:intergenic | 30.0% | |
| TTATCTTCTTGATGGAAATG+AGG | - | chr5.3:37526662-37526681 | MS.gene59015:CDS | 30.0% | |
| TTCAACCATAAATGGTTCAA+CGG | + | chr5.3:37526828-37526847 | None:intergenic | 30.0% | |
| TTCATAGGACCACTAATATT+AGG | + | chr5.3:37526111-37526130 | None:intergenic | 30.0% | |
| ! | ACTTTAGTTCCTTATTTGGT+TGG | - | chr5.3:37527332-37527351 | MS.gene59015:CDS | 30.0% |
| ! | CAGAAGTTAATTCTTTTAGG+TGG | - | chr5.3:37525926-37525945 | MS.gene59015:CDS | 30.0% |
| ! | TAGTTGACTTCAACCATAAA+TGG | + | chr5.3:37526836-37526855 | None:intergenic | 30.0% |
| ! | TATCGATTGGATGAACAAAT+TGG | - | chr5.3:37527069-37527088 | MS.gene59015:intron | 30.0% |
| ! | TTACAAGTTTGAAATCATGG+TGG | + | chr5.3:37527301-37527320 | None:intergenic | 30.0% |
| ! | TTCTTTGGAAAAACATTGCA+GGG | - | chr5.3:37527644-37527663 | MS.gene59015:CDS | 30.0% |
| ! | TTGTTACACGTTTTCTCATT+TGG | - | chr5.3:37527394-37527413 | MS.gene59015:CDS | 30.0% |
| ! | TTTCTTTGGAAAAACATTGC+AGG | - | chr5.3:37527643-37527662 | MS.gene59015:CDS | 30.0% |
| !! | AGGTGGTTATATTGTTTTTC+GGG | - | chr5.3:37526278-37526297 | MS.gene59015:CDS | 30.0% |
| !! | TATTTCGTTGAAGTTTTTGG+AGG | + | chr5.3:37525873-37525892 | None:intergenic | 30.0% |
| !!! | CTGTCATTTTCTTTGGATAT+TGG | + | chr5.3:37527559-37527578 | None:intergenic | 30.0% |
| AACTTCAAATCCTGTGATGA+TGG | - | chr5.3:37526138-37526157 | MS.gene59015:CDS | 35.0% | |
| AAGAAAAGAGATGGTGAGAA+AGG | + | chr5.3:37527752-37527771 | None:intergenic | 35.0% | |
| AAGATCAGACAAAAACTTCC+CGG | + | chr5.3:37525998-37526017 | None:intergenic | 35.0% | |
| ATAGTTGGATCTTCTTCAGA+TGG | + | chr5.3:37526522-37526541 | None:intergenic | 35.0% | |
| ATCATGTTCACATGTTTCCT+TGG | + | chr5.3:37527049-37527068 | None:intergenic | 35.0% | |
| ATTGACCGTTGAACCATTTA+TGG | - | chr5.3:37526820-37526839 | MS.gene59015:intron | 35.0% | |
| CAACTATCAGTGAAGAAAGA+CGG | - | chr5.3:37526535-37526554 | MS.gene59015:intron | 35.0% | |
| CAACTCTTAAATACCATAGC+AGG | - | chr5.3:37526981-37527000 | MS.gene59015:intron | 35.0% | |
| CATAAAGAACAGGATCATAG+AGG | - | chr5.3:37526426-37526445 | MS.gene59015:intron | 35.0% | |
| CCAAAGAAAATGACAGTGTT+TGG | - | chr5.3:37527563-37527582 | MS.gene59015:CDS | 35.0% | |
| CCATTATCATGTGATGAAGA+AGG | - | chr5.3:37526258-37526277 | MS.gene59015:CDS | 35.0% | |
| CCTTCTTCATCACATGATAA+TGG | + | chr5.3:37526261-37526280 | None:intergenic | 35.0% | |
| CTTCAACGAAATAACTGTGA+AGG | - | chr5.3:37525880-37525899 | MS.gene59015:CDS | 35.0% | |
| GAAACAAAGCAGTGAACATA+CGG | - | chr5.3:37527471-37527490 | MS.gene59015:CDS | 35.0% | |
| GCAGAAGAAAGAAAACGTAT+TGG | - | chr5.3:37526563-37526582 | MS.gene59015:intron | 35.0% | |
| GGAAGTAATTGATGCTTACA+TGG | - | chr5.3:37526479-37526498 | MS.gene59015:intron | 35.0% | |
| GGCAAAAAGAGTTCGAAAAA+TGG | - | chr5.3:37527842-37527861 | MS.gene59015:CDS | 35.0% | |
| TAACAATTTCTGCACGAAGA+AGG | - | chr5.3:37526307-37526326 | MS.gene59015:CDS | 35.0% | |
| TATGATGATCAAGGTTCACA+TGG | - | chr5.3:37525787-37525806 | MS.gene59015:CDS | 35.0% | |
| TCAACTGATGCTACTAATCT+TGG | - | chr5.3:37527529-37527548 | MS.gene59015:CDS | 35.0% | |
| TTATCATGTGATGAAGAAGG+TGG | - | chr5.3:37526261-37526280 | MS.gene59015:CDS | 35.0% | |
| ! | AGTTTTTGTCTGATCTTTCC+TGG | - | chr5.3:37526001-37526020 | MS.gene59015:CDS | 35.0% |
| ! | TGAAACCTTTAAAGATGACG+CGG | + | chr5.3:37526034-37526053 | None:intergenic | 35.0% |
| !! | GATAATGGAGACTCATTGTA+TGG | + | chr5.3:37526246-37526265 | None:intergenic | 35.0% |
| !! | TAACTTTTGGAAAATCGCAG+TGG | + | chr5.3:37527230-37527249 | None:intergenic | 35.0% |
| !! | TGCATGTTTTCTTTGAGTTC+AGG | + | chr5.3:37527598-37527617 | None:intergenic | 35.0% |
| !! | TTCTTTTAGGTGGGATTCAT+CGG | - | chr5.3:37525936-37525955 | MS.gene59015:CDS | 35.0% |
| !!! | CCAAACACTGTCATTTTCTT+TGG | + | chr5.3:37527566-37527585 | None:intergenic | 35.0% |
| AAAATGGAATGTTCCCATGC+CGG | - | chr5.3:37527858-37527877 | MS.gene59015:CDS | 40.0% | |
| AAAGAACAGGATCATAGAGG+TGG | - | chr5.3:37526429-37526448 | MS.gene59015:intron | 40.0% | |
| ACACCCTATTGTTCTTGTCA+TGG | - | chr5.3:37528014-37528033 | MS.gene59015:CDS | 40.0% | |
| AGCCCATGACAAGAACAATA+GGG | + | chr5.3:37528020-37528039 | None:intergenic | 40.0% | |
| ATATCCAATGGTAGGTGGAA+AGG | - | chr5.3:37527428-37527447 | MS.gene59015:CDS | 40.0% | |
| CACCCTATTGTTCTTGTCAT+GGG | - | chr5.3:37528015-37528034 | MS.gene59015:CDS | 40.0% | |
| CAGATGTGGATAAGATACAC+CGG | + | chr5.3:37527880-37527899 | None:intergenic | 40.0% | |
| CCTGGAGTTCCAAATTCTAA+TGG | - | chr5.3:37527943-37527962 | MS.gene59015:CDS | 40.0% | |
| CGTCTTTCTTCACTGATAGT+TGG | + | chr5.3:37526537-37526556 | None:intergenic | 40.0% | |
| GAAAAACATTGCAGGGTCTA+TGG | - | chr5.3:37527651-37527670 | MS.gene59015:CDS | 40.0% | |
| GAAAAATCTGACACAACTGG+TGG | - | chr5.3:37527691-37527710 | MS.gene59015:CDS | 40.0% | |
| GAGTGGTCCAAAGGTTAATA+AGG | - | chr5.3:37526164-37526183 | MS.gene59015:CDS | 40.0% | |
| TAGATTGTGGCAATGAAGAG+CGG | + | chr5.3:37525966-37525985 | None:intergenic | 40.0% | |
| TAGCCCATGACAAGAACAAT+AGG | + | chr5.3:37528021-37528040 | None:intergenic | 40.0% | |
| TGAGGTGTGTGACTGAAATT+TGG | - | chr5.3:37526680-37526699 | MS.gene59015:CDS | 40.0% | |
| TGTGTTATATCTCATGCTCC+TGG | - | chr5.3:37527715-37527734 | MS.gene59015:CDS | 40.0% | |
| TGTTACCGCGTCATCTTTAA+AGG | - | chr5.3:37526026-37526045 | MS.gene59015:CDS | 40.0% | |
| TTCGACGACACCAAAATCAA+TGG | - | chr5.3:37527915-37527934 | MS.gene59015:CDS | 40.0% | |
| TTGGATCTTCTTCAGATGGT+AGG | + | chr5.3:37526518-37526537 | None:intergenic | 40.0% | |
| ! | AAAATCACACTGAAAGCGCA+TGG | - | chr5.3:37528081-37528100 | MS.gene59015:CDS | 40.0% |
| ! | CACAATCTAGGTTACTTTCC+GGG | - | chr5.3:37525977-37525996 | MS.gene59015:CDS | 40.0% |
| ! | CCAAAATCAATGGTTCTACC+TGG | - | chr5.3:37527925-37527944 | MS.gene59015:CDS | 40.0% |
| ! | CCACAATCTAGGTTACTTTC+CGG | - | chr5.3:37525976-37525995 | MS.gene59015:CDS | 40.0% |
| ! | CCATTAGAATTTGGAACTCC+AGG | + | chr5.3:37527946-37527965 | None:intergenic | 40.0% |
| ! | TTTTCACAAAGCCGCATGTA+CGG | + | chr5.3:37527104-37527123 | None:intergenic | 40.0% |
| ! | TTTTTGCCATGTGTAGAGTG+TGG | + | chr5.3:37527830-37527849 | None:intergenic | 40.0% |
| !! | GTTTGAAATCATGGTGGATC+TGG | + | chr5.3:37527295-37527314 | None:intergenic | 40.0% |
| !!! | CCAGGTAGAACCATTGATTT+TGG | + | chr5.3:37527928-37527947 | None:intergenic | 40.0% |
| ACCACTCTTACCATCATCAC+AGG | + | chr5.3:37526151-37526170 | None:intergenic | 45.0% | |
| AGCATCAATTACTTCCTCGC+AGG | + | chr5.3:37526475-37526494 | None:intergenic | 45.0% | |
| CAAAGACCACACTCTACACA+TGG | - | chr5.3:37527821-37527840 | MS.gene59015:CDS | 45.0% | |
| CAATTTCTGCACGAAGAAGG+CGG | - | chr5.3:37526310-37526329 | MS.gene59015:CDS | 45.0% | |
| CATGTGTAGAGTGTGGTCTT+TGG | + | chr5.3:37527823-37527842 | None:intergenic | 45.0% | |
| CCGGAAAGTAACCTAGATTG+TGG | + | chr5.3:37525979-37525998 | None:intergenic | 45.0% | |
| GAAAACGTATTGGAAAGCGG+TGG | - | chr5.3:37526573-37526592 | MS.gene59015:intron | 45.0% | |
| GCTCTTCATTGCCACAATCT+AGG | - | chr5.3:37525965-37525984 | MS.gene59015:CDS | 45.0% | |
| GGAATATACTGCCGTACATG+CGG | - | chr5.3:37527090-37527109 | MS.gene59015:intron | 45.0% | |
| GGTAGGTGGAAAGGCTAAAA+TGG | - | chr5.3:37527437-37527456 | MS.gene59015:CDS | 45.0% | |
| GTTAAATGCTGATACCTGCG+AGG | - | chr5.3:37526458-37526477 | MS.gene59015:intron | 45.0% | |
| TGATGGTAAGAGTGGTCCAA+AGG | - | chr5.3:37526155-37526174 | MS.gene59015:CDS | 45.0% | |
| TGGATAAGATACACCGGCAT+GGG | + | chr5.3:37527874-37527893 | None:intergenic | 45.0% | |
| ! | AGAAAGGTTTTTCCAGCTCC+AGG | + | chr5.3:37527736-37527755 | None:intergenic | 45.0% |
| ! | TTAGCCTTTCCACCTACCAT+TGG | + | chr5.3:37527435-37527454 | None:intergenic | 45.0% |
| !! | GTCTTTGGAGCTAGGACTAA+TGG | + | chr5.3:37527808-37527827 | None:intergenic | 45.0% |
| !! | TCCTGTGATGATGGTAAGAG+TGG | - | chr5.3:37526147-37526166 | MS.gene59015:CDS | 45.0% |
| ACGAAGAAGGCGGTTCTGTA+AGG | - | chr5.3:37526320-37526339 | MS.gene59015:CDS | 50.0% | |
| AGATGACGCGGTAACAAACC+AGG | + | chr5.3:37526022-37526041 | None:intergenic | 50.0% | |
| ATATCTCATGCTCCTGGAGC+TGG | - | chr5.3:37527721-37527740 | MS.gene59015:CDS | 50.0% | |
| GTGGATAAGATACACCGGCA+TGG | + | chr5.3:37527875-37527894 | None:intergenic | 50.0% | |
| TCAGCATTTGCACCCTGCTA+TGG | + | chr5.3:37526997-37527016 | None:intergenic | 50.0% | |
| ! | GCGGTTCTGTAAGGAGCATA+TGG | - | chr5.3:37526329-37526348 | MS.gene59015:CDS | 50.0% |
| !! | AGAGTGTGGTCTTTGGAGCT+AGG | + | chr5.3:37527816-37527835 | None:intergenic | 50.0% |
| !! | TTGGTGTCGTCGAATGTCTC+TGG | + | chr5.3:37527909-37527928 | None:intergenic | 50.0% |
| CGTATTGGAAAGCGGTGGTG+AGG | - | chr5.3:37526578-37526597 | MS.gene59015:intron | 55.0% | |
| GCAGGGTGCAAATGCTGATG+AGG | - | chr5.3:37526999-37527018 | MS.gene59015:intron | 55.0% | |
| ! | GTCTCTGGCTTCGACAGATG+TGG | + | chr5.3:37527894-37527913 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 37525703 | 37528107 | 37525703 | ID=MS.gene59015 |
| chr5.3 | mRNA | 37525703 | 37528107 | 37525703 | ID=MS.gene59015.t1;Parent=MS.gene59015 |
| chr5.3 | exon | 37527211 | 37528107 | 37527211 | ID=MS.gene59015.t1.exon1;Parent=MS.gene59015.t1 |
| chr5.3 | CDS | 37527211 | 37528107 | 37527211 | ID=cds.MS.gene59015.t1;Parent=MS.gene59015.t1 |
| chr5.3 | exon | 37526658 | 37526807 | 37526658 | ID=MS.gene59015.t1.exon2;Parent=MS.gene59015.t1 |
| chr5.3 | CDS | 37526658 | 37526807 | 37526658 | ID=cds.MS.gene59015.t1;Parent=MS.gene59015.t1 |
| chr5.3 | exon | 37525703 | 37526368 | 37525703 | ID=MS.gene59015.t1.exon3;Parent=MS.gene59015.t1 |
| chr5.3 | CDS | 37525703 | 37526368 | 37525703 | ID=cds.MS.gene59015.t1;Parent=MS.gene59015.t1 |
| Gene Sequence |
| Protein sequence |
