AlfalfaGEDB | MS.gene59025

M. sativa cultivar XinJiangDaYe / MS.gene59025

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59025.t1	AES65186.1	81.9	387	53	2	24	410	26	395	5.60E-179	637.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59025.t1	Q9XID3	42.2	351	196	4	41	387	451	798	1.4e-69	265.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59025.t1	G7IG57	81.9	387	53	2	24	410	26	395	4.0e-179	637.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59025.t1	MTR_2g036430	83.957	374	43	2	38	410	38	395	0.0	657
MS.gene59025.t1	MTR_2g036440	70.694	389	108	4	24	410	25	409	0.0	567
MS.gene59025.t1	MTR_2g036500	68.112	392	119	3	21	410	21	408	0.0	550
MS.gene59025.t1	MTR_2g036460	52.105	380	168	4	25	392	84	461	1.26e-133	392
MS.gene59025.t1	MTR_2g036490	52.861	367	164	5	47	410	106	466	1.94e-129	381
MS.gene59025.t1	MTR_2g036480	46.471	340	159	7	36	358	44	377	3.99e-96	293
MS.gene59025.t1	MTR_1g027460	48.089	314	152	7	52	359	8	316	6.63e-93	284
MS.gene59025.t1	MTR_1g027250	50.000	290	134	7	76	359	5	289	6.56e-89	273
MS.gene59025.t1	MTR_1g031460	47.134	314	154	7	51	357	269	577	6.70e-89	281
MS.gene59025.t1	MTR_6g082860	43.976	332	170	7	47	366	32	359	1.20e-88	273

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59025.t1	AT1G34300	41.379	377	199	7	5	374	424	785	1.36e-84	275
MS.gene59025.t1	AT4G32300	43.503	354	182	9	52	397	472	815	7.23e-81	265
MS.gene59025.t1	AT5G38240	38.281	384	193	10	20	380	203	565	3.25e-78	253
MS.gene59025.t1	AT5G38240	37.531	397	202	11	9	380	254	629	3.42e-78	254
MS.gene59025.t1	AT5G38240	38.281	384	193	10	20	380	249	611	1.21e-77	252
MS.gene59025.t1	AT5G24080	44.126	349	170	9	5	346	346	676	1.84e-77	254
MS.gene59025.t1	AT5G24080	44.126	349	170	9	5	346	346	676	1.84e-77	254
MS.gene59025.t1	AT5G24080	44.126	349	170	9	5	346	473	803	1.61e-76	254
MS.gene59025.t1	AT5G38280	41.311	305	168	7	63	359	320	621	4.56e-75	246
MS.gene59025.t1	AT5G38280	41.311	305	168	7	63	359	320	621	7.16e-75	246

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 80 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTTAAGATTGGTCG+TGG	0.484809	2.4:-52946010	MS.gene59025:CDS
AAAATTTGATGCTGAAAAGT+TGG	0.369076	2.4:-52945222	MS.gene59025:CDS
AAACCAAAATCAGCAACTTT+AGG	0.213283	2.4:+52945464	None:intergenic
AACCAAAATCAGCAACTTTA+GGG	0.275623	2.4:+52945465	None:intergenic
AACCCTAAAGTTGCTGATTT+TGG	0.134710	2.4:-52945467	MS.gene59025:CDS
AAGACCTATAATGAGTCTTG+TGG	0.651731	2.4:-52945099	MS.gene59025:CDS
AAGCTTCAAGAGATTGCAAT+TGG	0.361999	2.4:-52945587	MS.gene59025:CDS
AAGGTTCTTCATGGGAGTTC+TGG	0.306331	2.4:-52945794	MS.gene59025:CDS
AAGTGCGACGTTTATAGTTT+TGG	0.315915	2.4:-52945335	MS.gene59025:CDS
AATACTCACATAACGATGAC+CGG	0.561586	2.4:-52945419	MS.gene59025:CDS

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAAATCAGCAACTTT+AGG	+	chr2.4:52945729-52945748	None:intergenic	30.0%
AACCAAAATCAGCAACTTTA+GGG	+	chr2.4:52945728-52945747	None:intergenic	30.0%
ACAATTTATCACAGTCACTA+TGG	-	chr2.4:52945218-52945237	MS.gene59025:CDS	30.0%
AGCACTCGTTTATGAATATA+TGG	-	chr2.4:52945524-52945543	MS.gene59025:CDS	30.0%
ATAGTGACTGTGATAAATTG+TGG	+	chr2.4:52945219-52945238	None:intergenic	30.0%
CAATTTATCACAGTCACTAT+GGG	-	chr2.4:52945219-52945238	MS.gene59025:CDS	30.0%
GCACTCGTTTATGAATATAT+GGG	-	chr2.4:52945525-52945544	MS.gene59025:CDS	30.0%
TAGTGACTGTGATAAATTGT+GGG	+	chr2.4:52945218-52945237	None:intergenic	30.0%
TATAAAGGAAGCTTCAGTAA+TGG	-	chr2.4:52945357-52945376	MS.gene59025:CDS	30.0%
TATAGAGATTGTAGAGAGAA+TGG	-	chr2.4:52946028-52946047	MS.gene59025:CDS	30.0%

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	52944884	52946328	52944884	ID=MS.gene59025
chr2.4	mRNA	52944884	52946328	52944884	ID=MS.gene59025.t1;Parent=MS.gene59025
chr2.4	exon	52946295	52946328	52946295	ID=MS.gene59025.t1.exon1;Parent=MS.gene59025.t1
chr2.4	CDS	52946295	52946328	52946295	ID=cds.MS.gene59025.t1;Parent=MS.gene59025.t1
chr2.4	exon	52944884	52946085	52944884	ID=MS.gene59025.t1.exon2;Parent=MS.gene59025.t1
chr2.4	CDS	52944884	52946085	52944884	ID=cds.MS.gene59025.t1;Parent=MS.gene59025.t1

Gene Sequence

>MS.gene59025

ATGGCAGCTACAGTTGTGGTGGTTATCATTCTAGGTATGAAGGATTTTAAACTATGAAATTTTCTTTTAAGCATAACTGCGTCAGAGATATATATCTTTAAATCATTTATCTTTAAATTAATTTAAAAGACATATGATGCTGTTTTCCCTTCATTTTATTATGTTTTAATTTTTTTCATCTTTTGTCCTATAATAGTTTTCTTCTTGTTTAAGTCACAGTATTTATGTTTCTGATTGATGCAGTTATCGTTCTTATATTGTTAAGTGTTTTGACATGGTTACTACCAAATTGTCGAAAAACATTTAAGATTGGTCGTGGATCAGCTACTCACCCACAATTTATCACAGTCACTATGGGAAAATTTCTAGAGGATATAGAAAAGGAGAAACAAGTTAGATTCACTGATCAACAACTAAGAATTGCGACCGATAACTTTTCCTATTTGTTGGGAACCGGAGGTTTTGGAGCAGTTTATAAAGGAAGCTTCAGTAATGGAATCATGATAGCTGTTAAGGTTCTTCATGGGAGTTCTGGTAAGAGAAATGATCAACAATTTATGGCAGAAGTAGGTACTATTGGTAAAATTCATCACTTTAATCTTGTTAGACTATATGGATTTTGCTTTGAAAGAAACTTGATAGCACTCGTTTATGAATATATGGGAAATGGATCTCTTGACAAGTTTTTGTTTCAAGAGAACACAATTTTAGGGTTTGAAAAGCTTCAAGAGATTGCAATTGGGACAGCAAAAGGCATTGCTTACTTGCATGAAGAGTGTCAACAAAGAATAATCCATTATGATATAAAACCAGGAAATATTCTCTTAGATAAGAATTTCAACCCTAAAGTTGCTGATTTTGGTTTAGCCAAACTTTGCAATAGAGAAAATACTCACATAACGATGACCGGAGGAAGAGGAACGCCTGGTTATGCCGCACCTGAACTTTGGATGCCATTTCCTGTCACTCACAAGTGCGACGTTTATAGTTTTGGTATACTACTATTTGAAATTATAGGTAGGAGAAAAAACCATGATGTAAACCTTTCAGAAAGTCAAGAATGGTTTCCAATGTGGGTTTGGAAAAAATTTGATGCTGAAAAGTTGGAGGAGTTAGTAGCAGCTTGTGGGATAGAGGAGCAAAATATAGAGATTGTAGAGAGAATGGTTAAGGTAGCTTTGGCATGTGTTCAATATAGGCCAGAATCAAGACCTATAATGAGTCTTGTGGTACAAATGTTGGAAGGTTTAGTTGAAATTCCAAAGCCTTTGAATCCTTTTCAATATATGATTGATGGAACCTTTTCTTCTCTTCCAATGCCAATATCACAGATCAATACTGATACAAGTATTGGTTCTGGCTCTTCTGCGATCGTAACTGAATCTAGTGTTGAAGGTGTTACTCCTCTAATGACGAAGTACCAAGTCGAATCAGCATCTCGCTAA

Protein sequence

>MS.gene59025.t1

MAATVVVVIILVIVLILLSVLTWLLPNCRKTFKIGRGSATHPQFITVTMGKFLEDIEKEKQVRFTDQQLRIATDNFSYLLGTGGFGAVYKGSFSNGIMIAVKVLHGSSGKRNDQQFMAEVGTIGKIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDKFLFQENTILGFEKLQEIAIGTAKGIAYLHEECQQRIIHYDIKPGNILLDKNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGILLFEIIGRRKNHDVNLSESQEWFPMWVWKKFDAEKLEELVAACGIEEQNIEIVERMVKVALACVQYRPESRPIMSLVVQMLEGLVEIPKPLNPFQYMIDGTFSSLPMPISQINTDTSIGSGSSAIVTESSVEGVTPLMTKYQVESASR