Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59061.t1 | XP_003609280.3 | 89.9 | 327 | 32 | 1 | 1 | 326 | 1 | 327 | 9.00E-172 | 612.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59061.t1 | Q9LT81 | 40.5 | 351 | 144 | 11 | 32 | 326 | 32 | 373 | 2.6e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59061.t1 | A0A396IEH0 | 90.7 | 248 | 22 | 1 | 1 | 247 | 1 | 248 | 3.5e-133 | 484.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59061.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59061.t1 | MTR_4g113970 | 94.737 | 247 | 12 | 1 | 1 | 246 | 1 | 247 | 1.19e-177 | 491 |
| MS.gene59061.t1 | MTR_4g113860 | 61.791 | 335 | 91 | 8 | 1 | 326 | 1 | 307 | 1.76e-140 | 400 |
| MS.gene59061.t1 | MTR_4g113940 | 55.793 | 328 | 85 | 10 | 1 | 326 | 1 | 270 | 3.45e-111 | 324 |
| MS.gene59061.t1 | MTR_3g050390 | 51.590 | 283 | 76 | 7 | 44 | 326 | 7 | 228 | 1.77e-87 | 263 |
| MS.gene59061.t1 | MTR_4g113890 | 47.130 | 331 | 68 | 9 | 1 | 325 | 1 | 230 | 9.14e-75 | 230 |
| MS.gene59061.t1 | MTR_8g066730 | 34.106 | 302 | 140 | 10 | 71 | 326 | 86 | 374 | 8.11e-41 | 146 |
| MS.gene59061.t1 | MTR_4g113980 | 89.024 | 82 | 9 | 0 | 245 | 326 | 9 | 90 | 2.41e-33 | 118 |
| MS.gene59061.t1 | MTR_8g066730 | 35.922 | 206 | 91 | 6 | 71 | 244 | 86 | 282 | 2.31e-30 | 117 |
| MS.gene59061.t1 | MTR_3g466460 | 53.763 | 93 | 36 | 2 | 240 | 326 | 3 | 94 | 4.56e-20 | 85.1 |
| MS.gene59061.t1 | MTR_3g028610 | 42.857 | 91 | 47 | 1 | 154 | 244 | 96 | 181 | 7.59e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59061.t1 | AT3G19360 | 44.753 | 324 | 131 | 10 | 42 | 326 | 59 | 373 | 1.63e-76 | 239 |
| MS.gene59061.t1 | AT3G19360 | 44.753 | 324 | 131 | 10 | 42 | 326 | 59 | 373 | 1.63e-76 | 239 |
| MS.gene59061.t1 | AT1G32360 | 32.550 | 298 | 159 | 8 | 71 | 326 | 85 | 382 | 1.96e-36 | 135 |
| MS.gene59061.t1 | AT2G35430 | 30.392 | 204 | 108 | 8 | 138 | 326 | 66 | 250 | 3.00e-16 | 77.4 |
| MS.gene59061.t1 | AT2G35430 | 35.849 | 106 | 46 | 4 | 77 | 168 | 71 | 168 | 2.94e-11 | 63.2 |
Find 101 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTTCTCCAAAGTCTTT+TGG | 0.221074 | 8.4:-13969585 | MS.gene59061:CDS |
| GCAATAAGCATTGGAAATAT+TGG | 0.228785 | 8.4:-13969603 | MS.gene59061:CDS |
| ATGAGGATCCTGCTAGGTTT+AGG | 0.244285 | 8.4:-13969656 | MS.gene59061:CDS |
| TGGGGATGGTTCTAACAATT+TGG | 0.253072 | 8.4:-13969565 | MS.gene59061:CDS |
| CTAACAATTTGGAAGGCATT+AGG | 0.254194 | 8.4:-13969554 | MS.gene59061:CDS |
| AAGAAGATCAATGGTATTTA+TGG | 0.269407 | 8.4:-13967347 | MS.gene59061:CDS |
| CACTTACTTAGGTTGAAATT+AGG | 0.275359 | 8.4:-13967371 | MS.gene59061:CDS |
| CAAGGCAGCCACCACCAAAT+TGG | 0.283685 | 8.4:-13969773 | MS.gene59061:CDS |
| TGAGGATCCTGCTAGGTTTA+GGG | 0.310738 | 8.4:-13969655 | MS.gene59061:CDS |
| CTAGGTTTAGGGATGATTCT+TGG | 0.317545 | 8.4:-13969644 | MS.gene59061:CDS |
| GCAACACCTGTTGAGGCTTT+TGG | 0.324209 | 8.4:+13967464 | None:intergenic |
| TTCCAATAAGCGCTCCTTGC+TGG | 0.328577 | 8.4:+13969519 | None:intergenic |
| AGCCAGCAAGGAGCGCTTAT+TGG | 0.331978 | 8.4:-13969521 | MS.gene59061:CDS |
| TCAATGGTATTTATGGTGAT+TGG | 0.333200 | 8.4:-13967340 | MS.gene59061:CDS |
| CACTTCAATGATATCGTTGT+TGG | 0.339985 | 8.4:+13970100 | None:intergenic |
| ATACAGGGAGCTGTCCCTTT+GGG | 0.341839 | 8.4:-13969473 | MS.gene59061:CDS |
| ACCTGAACTTAGTGCAGATT+CGG | 0.365276 | 8.4:+13969919 | None:intergenic |
| TCAAAGTGATCGTTATTGAT+TGG | 0.371371 | 8.4:+13970065 | None:intergenic |
| TAACAATTTGGAAGGCATTA+GGG | 0.381170 | 8.4:-13969553 | MS.gene59061:CDS |
| CAAAGTGATCGTTATTGATT+GGG | 0.381558 | 8.4:+13970066 | None:intergenic |
| TAAGGCAGCCACCGCGGAAT+TGG | 0.383871 | 8.4:-13969842 | MS.gene59061:CDS |
| ATGCTGCTTGTTCCTCGGTT+TGG | 0.390724 | 8.4:+13969954 | None:intergenic |
| AACGGTGAGGAATGTCCTTA+TGG | 0.402090 | 8.4:-13969699 | MS.gene59061:CDS |
| AGGTTTGGTACTTGTAGAAA+TGG | 0.405516 | 8.4:-13969900 | MS.gene59061:CDS |
| CCCGAATCTGCACTAAGTTC+AGG | 0.412306 | 8.4:-13969920 | MS.gene59061:CDS |
| ATCTGCACTAAGTTCAGGTT+TGG | 0.426557 | 8.4:-13969915 | MS.gene59061:CDS |
| CCTGAACTTAGTGCAGATTC+GGG | 0.429469 | 8.4:+13969920 | None:intergenic |
| CATACAGGGAGCTGTCCCTT+TGG | 0.435906 | 8.4:-13969474 | MS.gene59061:CDS |
| GATTGATATGCCCTCCTTCA+AGG | 0.436742 | 8.4:-13969992 | MS.gene59061:CDS |
| CTGCTTGTTCCTCGGTTTGG+TGG | 0.444819 | 8.4:+13969957 | None:intergenic |
| GCAGCCACCGCGGAATTGGC+AGG | 0.444919 | 8.4:-13969838 | MS.gene59061:CDS |
| AAGGCAGCCACCACCAAATT+GGG | 0.448398 | 8.4:-13969772 | MS.gene59061:CDS |
| CTGTGTCAATGGCAGCATAC+AGG | 0.450029 | 8.4:-13969489 | MS.gene59061:CDS |
| GAACCATCCCCAAAAGACTT+TGG | 0.450065 | 8.4:+13969576 | None:intergenic |
| CTTGTTCCTCGGTTTGGTGG+AGG | 0.456539 | 8.4:+13969960 | None:intergenic |
| CACTTTGCTCATGGAGAAGC+AGG | 0.457533 | 8.4:-13969441 | MS.gene59061:intron |
| ATAAGAAGAAGCACTTACTT+AGG | 0.466516 | 8.4:-13967382 | MS.gene59061:CDS |
| AGCAATTCTCGCCCTCTTGA+AGG | 0.471550 | 8.4:+13970034 | None:intergenic |
| AATATCGTCTGGAAAATTCA+TGG | 0.472650 | 8.4:+13970160 | None:intergenic |
| CTACAGGTTGGAATATCGTC+TGG | 0.476700 | 8.4:+13970149 | None:intergenic |
| AAAATTGCAATTACGCTCAC+GGG | 0.487194 | 8.4:-13969875 | MS.gene59061:CDS |
| ACTTCACCAAAAGCCTCAAC+AGG | 0.492958 | 8.4:-13967470 | MS.gene59061:CDS |
| TCGTTATTGATTGGGATTTG+AGG | 0.495130 | 8.4:+13970074 | None:intergenic |
| GGAGGCTGAATCATCCTTGA+AGG | 0.501461 | 8.4:+13969978 | None:intergenic |
| GAGACCTGTCACTTTGCTCA+TGG | 0.502581 | 8.4:-13969450 | MS.gene59061:CDS |
| CTCACGGGGCTGATGAGATA+AGG | 0.504892 | 8.4:-13969860 | MS.gene59061:CDS |
| TTGATCCTCGCAACGACGAA+CGG | 0.512205 | 8.4:-13969809 | MS.gene59061:CDS |
| CATGACAAAGGAAGAGGAGC+AGG | 0.513127 | 8.4:-13967405 | MS.gene59061:CDS |
| TGATCTTCATCCCAATTTGG+TGG | 0.514081 | 8.4:+13969762 | None:intergenic |
| GAGTTACAAGCTCCTGGTGG+AGG | 0.514447 | 8.4:-13967548 | MS.gene59061:CDS |
| AAGCTACACTTATCACCATA+AGG | 0.515098 | 8.4:+13969684 | None:intergenic |
| GAAGGTAGGAGTAGAATCAT+TGG | 0.517961 | 8.4:+13967442 | None:intergenic |
| CTTTGTCATGAGTAGACTTG+TGG | 0.519083 | 8.4:+13967418 | None:intergenic |
| TTCTCCATGAGCAAAGTGAC+AGG | 0.523166 | 8.4:+13969446 | None:intergenic |
| TTCTTCATGAGGATCCTGCT+AGG | 0.523992 | 8.4:-13969662 | MS.gene59061:CDS |
| GGAAGACAAAGCTGTGTCAA+TGG | 0.532349 | 8.4:-13969500 | MS.gene59061:CDS |
| ATCATTGGCAACACCTGTTG+AGG | 0.534873 | 8.4:+13967457 | None:intergenic |
| GAATCATCCCTAAACCTAGC+AGG | 0.537317 | 8.4:+13969648 | None:intergenic |
| TCTTCATCCCAATTTGGTGG+TGG | 0.537541 | 8.4:+13969765 | None:intergenic |
| GATGGTTCTAACAATTTGGA+AGG | 0.539743 | 8.4:-13969561 | MS.gene59061:CDS |
| GAGTGTTCTGCAATAAGCAT+TGG | 0.542316 | 8.4:-13969612 | MS.gene59061:CDS |
| AAGTGACAGGTCTCCCCAAA+GGG | 0.549845 | 8.4:+13969459 | None:intergenic |
| TGTGTCAATGGCAGCATACA+GGG | 0.552109 | 8.4:-13969488 | MS.gene59061:CDS |
| CTGCGGTGGTGACATCCTAC+AGG | 0.555913 | 8.4:+13970133 | None:intergenic |
| GAAAATTGCAATTACGCTCA+CGG | 0.559384 | 8.4:-13969876 | MS.gene59061:CDS |
| AAATCAGAGTTACAAGCTCC+TGG | 0.561857 | 8.4:-13967554 | MS.gene59061:intron |
| AAATTAGGCAAGAAGATCAA+TGG | 0.564267 | 8.4:-13967356 | MS.gene59061:CDS |
| AGTAGACTTGTGGTGAAGGT+AGG | 0.573300 | 8.4:+13967428 | None:intergenic |
| CAACGACGAACGGCTTCAGA+TGG | 0.574258 | 8.4:-13969799 | MS.gene59061:CDS |
| TCAGCTTCAATGCCTCCACC+AGG | 0.581762 | 8.4:+13967536 | None:intergenic |
| GGCTGAATCATCCTTGAAGG+AGG | 0.587591 | 8.4:+13969981 | None:intergenic |
| TCTACTCATGACAAAGGAAG+AGG | 0.589668 | 8.4:-13967411 | MS.gene59061:CDS |
| CTCGCCCTCTTGAAGGAATG+TGG | 0.590307 | 8.4:+13970041 | None:intergenic |
| TTGAGCCACATTCCTTCAAG+AGG | 0.596203 | 8.4:-13970046 | MS.gene59061:CDS |
| TACAGGGAGCTGTCCCTTTG+GGG | 0.596640 | 8.4:-13969472 | MS.gene59061:CDS |
| CATGAGTAGACTTGTGGTGA+AGG | 0.601665 | 8.4:+13967424 | None:intergenic |
| GGAGGGCATATCAATCCACT+AGG | 0.602999 | 8.4:+13969999 | None:intergenic |
| GGGCTGTGAACAAGCCAGCA+AGG | 0.614710 | 8.4:-13969533 | MS.gene59061:CDS |
| TGAGCCACATTCCTTCAAGA+GGG | 0.615845 | 8.4:-13970045 | MS.gene59061:CDS |
| TAAGTGTAGCTTTCTTCATG+AGG | 0.621800 | 8.4:-13969673 | MS.gene59061:CDS |
| TGAAGCCGTTCGTCGTTGCG+AGG | 0.623112 | 8.4:+13969804 | None:intergenic |
| AAAGTGACAGGTCTCCCCAA+AGG | 0.626382 | 8.4:+13969458 | None:intergenic |
| CAGACGATATTCCAACCTGT+AGG | 0.630277 | 8.4:-13970148 | MS.gene59061:CDS |
| AGCTCCTGCCAATTCCGCGG+TGG | 0.631980 | 8.4:+13969834 | None:intergenic |
| CACAAGTCTACTCATGACAA+AGG | 0.632619 | 8.4:-13967417 | MS.gene59061:CDS |
| GAGGGCATATCAATCCACTA+GGG | 0.647490 | 8.4:+13970000 | None:intergenic |
| AACGGCTTCAGATGGAGACA+AGG | 0.650858 | 8.4:-13969791 | MS.gene59061:CDS |
| GCTGAATCATCCTTGAAGGA+GGG | 0.652254 | 8.4:+13969982 | None:intergenic |
| ACTAGCTCCTGCCAATTCCG+CGG | 0.663260 | 8.4:+13969831 | None:intergenic |
| GGTGGTGACATCCTACAGGT+TGG | 0.681473 | 8.4:+13970137 | None:intergenic |
| ATGAGATAAGGCAGCCACCG+CGG | 0.683865 | 8.4:-13969848 | MS.gene59061:CDS |
| TCAGAGTTACAAGCTCCTGG+TGG | 0.696701 | 8.4:-13967551 | MS.gene59061:intron |
| GGGCATATCAATCCACTAGG+GGG | 0.701239 | 8.4:+13970002 | None:intergenic |
| ACAACGATATCATTGAAGTG+AGG | 0.706867 | 8.4:-13970097 | MS.gene59061:CDS |
| ATTCAGCCTCCACCAAACCG+AGG | 0.710090 | 8.4:-13969966 | MS.gene59061:CDS |
| CAAGAAGTATTACAACGGTG+AGG | 0.717786 | 8.4:-13969712 | MS.gene59061:CDS |
| AAATTGCAATTACGCTCACG+GGG | 0.722741 | 8.4:-13969874 | MS.gene59061:CDS |
| AGGGCATATCAATCCACTAG+GGG | 0.727577 | 8.4:+13970001 | None:intergenic |
| CTGTGCAAGAAGTATTACAA+CGG | 0.729247 | 8.4:-13969717 | MS.gene59061:CDS |
| TTGGATGAAGCAAACTGCGG+TGG | 0.740311 | 8.4:+13970119 | None:intergenic |
| TTGTTGGATGAAGCAAACTG+CGG | 0.811729 | 8.4:+13970116 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTTTTGCATATT+TGG | - | chr8.4:13969811-13969830 | MS.gene59061:CDS | 10.0% |
| !! | GTGATTGAATATTTAAATTT+AGG | + | chr8.4:13968857-13968876 | None:intergenic | 15.0% |
| !!! | TTCTAATTCAAAAGTAATTT+TGG | + | chr8.4:13969085-13969104 | None:intergenic | 15.0% |
| !! | AAATAAAAATTCCTGACAAT+GGG | + | chr8.4:13968814-13968833 | None:intergenic | 20.0% |
| !! | AATCATCCATTATAATATGA+AGG | + | chr8.4:13968879-13968898 | None:intergenic | 20.0% |
| !! | ACAATTACAATAGATAAGAA+AGG | - | chr8.4:13969838-13969857 | MS.gene59061:CDS | 20.0% |
| !! | CAAAACCATTAATCAAAATA+GGG | + | chr8.4:13968106-13968125 | None:intergenic | 20.0% |
| !! | TCAAAACCATTAATCAAAAT+AGG | + | chr8.4:13968107-13968126 | None:intergenic | 20.0% |
| !!! | TTATATGTCATGCTTATTTT+TGG | - | chr8.4:13969284-13969303 | MS.gene59061:intron | 20.0% |
| ! | AAAAATCTGGTATAGAAACA+TGG | + | chr8.4:13968516-13968535 | None:intergenic | 25.0% |
| ! | AAGAAGATCAATGGTATTTA+TGG | - | chr8.4:13970139-13970158 | MS.gene59061:CDS | 25.0% |
| ! | AATAAAAATTCCTGACAATG+GGG | + | chr8.4:13968813-13968832 | None:intergenic | 25.0% |
| ! | AATGTTTGACCGTAAAATTA+AGG | + | chr8.4:13969673-13969692 | None:intergenic | 25.0% |
| ! | ATTAATCAAAATAGGGAGAA+TGG | + | chr8.4:13968099-13968118 | None:intergenic | 25.0% |
| ! | CAAATAAAAATTCCTGACAA+TGG | + | chr8.4:13968815-13968834 | None:intergenic | 25.0% |
| ! | CAATCACCTTCATATTATAA+TGG | - | chr8.4:13968870-13968889 | MS.gene59061:intron | 25.0% |
| ! | TTATAACAATTGAAGCTGTT+TGG | - | chr8.4:13969864-13969883 | MS.gene59061:CDS | 25.0% |
| !!! | AAGTAATTTTGGTACATACT+TGG | + | chr8.4:13969074-13969093 | None:intergenic | 25.0% |
| !!! | ATGTTTCTATACCAGATTTT+TGG | - | chr8.4:13968515-13968534 | MS.gene59061:intron | 25.0% |
| !!! | ATTCTCCCTATTTTGATTAA+TGG | - | chr8.4:13968098-13968117 | MS.gene59061:intron | 25.0% |
| !!! | TTCTTTCAGTTTTGAAGTAA+TGG | - | chr8.4:13968364-13968383 | MS.gene59061:intron | 25.0% |
| AAAGATAAAAGCAGTCACTT+CGG | + | chr8.4:13969445-13969464 | None:intergenic | 30.0% | |
| AAATTAGGCAAGAAGATCAA+TGG | - | chr8.4:13970130-13970149 | MS.gene59061:CDS | 30.0% | |
| AATATAAAACCTCGCAAATG+AGG | + | chr8.4:13969634-13969653 | None:intergenic | 30.0% | |
| AATCAACAAATGTAAAGCTG+TGG | + | chr8.4:13968936-13968955 | None:intergenic | 30.0% | |
| ATATCATACACAACAACGAT+AGG | + | chr8.4:13968345-13968364 | None:intergenic | 30.0% | |
| ATCTTAGTGTGTCAAATTCA+TGG | - | chr8.4:13968418-13968437 | MS.gene59061:intron | 30.0% | |
| ATGATACCAAGTACGAATAT+CGG | + | chr8.4:13969381-13969400 | None:intergenic | 30.0% | |
| TCAAAGTGATCGTTATTGAT+TGG | + | chr8.4:13967424-13967443 | None:intergenic | 30.0% | |
| TCAATGGTATTTATGGTGAT+TGG | - | chr8.4:13970146-13970165 | MS.gene59061:CDS | 30.0% | |
| TGTCCGACTCATAAAAAAAT+TGG | - | chr8.4:13969599-13969618 | MS.gene59061:CDS | 30.0% | |
| TGTTGTGTATGATATTTCCA+TGG | - | chr8.4:13968252-13968271 | MS.gene59061:intron | 30.0% | |
| TTCTATGATGATTGTGTAGA+AGG | - | chr8.4:13968171-13968190 | MS.gene59061:intron | 30.0% | |
| TTGTTAAATAGCGACTATAG+CGG | + | chr8.4:13968747-13968766 | None:intergenic | 30.0% | |
| ! | AATGGATGATTGCTATTGTA+TGG | - | chr8.4:13968888-13968907 | MS.gene59061:intron | 30.0% |
| ! | CAAAGTGATCGTTATTGATT+GGG | + | chr8.4:13967423-13967442 | None:intergenic | 30.0% |
| ! | CTTTACATTTGTTGATTGAC+TGG | - | chr8.4:13968939-13968958 | MS.gene59061:intron | 30.0% |
| ! | TATCCTAAAAAGCATATCAC+TGG | - | chr8.4:13968683-13968702 | MS.gene59061:intron | 30.0% |
| ! | TCAAACATTTTTAATGCAGC+TGG | - | chr8.4:13969684-13969703 | MS.gene59061:CDS | 30.0% |
| ! | TGTCGCAATCCTTAATTTTA+CGG | - | chr8.4:13969661-13969680 | MS.gene59061:CDS | 30.0% |
| ! | TTTTGATCTTCATCCCAATT+TGG | + | chr8.4:13967730-13967749 | None:intergenic | 30.0% |
| !! | ATAAGAAGAAGCACTTACTT+AGG | - | chr8.4:13970104-13970123 | MS.gene59061:CDS | 30.0% |
| !! | CACTTACTTAGGTTGAAATT+AGG | - | chr8.4:13970115-13970134 | MS.gene59061:CDS | 30.0% |
| !! | GATACACTAGGATAGTTTTA+CGG | - | chr8.4:13969124-13969143 | MS.gene59061:intron | 30.0% |
| !! | GCAATAAGCATTGGAAATAT+TGG | - | chr8.4:13967883-13967902 | MS.gene59061:intron | 30.0% |
| !! | TAACAATTTGGAAGGCATTA+GGG | - | chr8.4:13967933-13967952 | MS.gene59061:intron | 30.0% |
| !!! | CCTCCAATTTTTTTATGAGT+CGG | + | chr8.4:13969605-13969624 | None:intergenic | 30.0% |
| AAAATTGCAATTACGCTCAC+GGG | - | chr8.4:13967611-13967630 | MS.gene59061:intron | 35.0% | |
| AAGCTACACTTATCACCATA+AGG | + | chr8.4:13967805-13967824 | None:intergenic | 35.0% | |
| ACAACGATATCATTGAAGTG+AGG | - | chr8.4:13967389-13967408 | MS.gene59061:CDS | 35.0% | |
| AGCTATTACACTGTTGCATA+GGG | + | chr8.4:13968646-13968665 | None:intergenic | 35.0% | |
| AGTTTATGTCAAACCAACCA+TGG | + | chr8.4:13968272-13968291 | None:intergenic | 35.0% | |
| ATACACAGTGTTGTCAATTG+TGG | - | chr8.4:13968590-13968609 | MS.gene59061:intron | 35.0% | |
| ATCAGCCAGAACAAAATACA+TGG | + | chr8.4:13969893-13969912 | None:intergenic | 35.0% | |
| ATCATACACAACAACGAAAG+TGG | + | chr8.4:13968245-13968264 | None:intergenic | 35.0% | |
| CACTTCAATGATATCGTTGT+TGG | + | chr8.4:13967389-13967408 | None:intergenic | 35.0% | |
| CCGACTCATAAAAAAATTGG+AGG | - | chr8.4:13969602-13969621 | MS.gene59061:CDS | 35.0% | |
| GAAAATTGCAATTACGCTCA+CGG | - | chr8.4:13967610-13967629 | MS.gene59061:intron | 35.0% | |
| GAGTCGGACATTAAATTTAC+AGG | + | chr8.4:13969589-13969608 | None:intergenic | 35.0% | |
| GTGTATGATATTTCCATGGT+TGG | - | chr8.4:13968256-13968275 | MS.gene59061:intron | 35.0% | |
| TAACCTTATCCATGCAACAT+AGG | - | chr8.4:13969402-13969421 | MS.gene59061:intron | 35.0% | |
| TAAGTGTAGCTTTCTTCATG+AGG | - | chr8.4:13967813-13967832 | MS.gene59061:intron | 35.0% | |
| TATGGTAGCTGGAACATAAT+CGG | + | chr8.4:13968444-13968463 | None:intergenic | 35.0% | |
| TGTCAAAAACCTTAACGTCT+TGG | - | chr8.4:13969731-13969750 | MS.gene59061:CDS | 35.0% | |
| TGTTAAATAGCGACTATAGC+GGG | + | chr8.4:13968746-13968765 | None:intergenic | 35.0% | |
| TTGTATCCGATATTCGTACT+TGG | - | chr8.4:13969372-13969391 | MS.gene59061:intron | 35.0% | |
| ! | AAAAAATGCTGCTTGTTCCT+CGG | + | chr8.4:13967540-13967559 | None:intergenic | 35.0% |
| ! | AGCTTTTGTTGAGCTTACTA+TGG | + | chr8.4:13969987-13970006 | None:intergenic | 35.0% |
| ! | AGGTTTGGTACTTGTAGAAA+TGG | - | chr8.4:13967586-13967605 | MS.gene59061:intron | 35.0% |
| ! | GACTGGAACTTTTAGATGTT+TGG | - | chr8.4:13968956-13968975 | MS.gene59061:intron | 35.0% |
| ! | GGAAAACTTGTTTGTACGAT+CGG | - | chr8.4:13968385-13968404 | MS.gene59061:intron | 35.0% |
| ! | GGTTTCCATGTATTTTGTTC+TGG | - | chr8.4:13969885-13969904 | MS.gene59061:CDS | 35.0% |
| ! | TCGTTATTGATTGGGATTTG+AGG | + | chr8.4:13967415-13967434 | None:intergenic | 35.0% |
| ! | TTATGATAATGCTGCCCTAT+TGG | - | chr8.4:13968563-13968582 | MS.gene59061:intron | 35.0% |
| !! | ATTGGTTCTCCAAAGTCTTT+TGG | - | chr8.4:13967901-13967920 | MS.gene59061:intron | 35.0% |
| !! | CTAACAATTTGGAAGGCATT+AGG | - | chr8.4:13967932-13967951 | MS.gene59061:intron | 35.0% |
| !! | CTGTGCAAGAAGTATTACAA+CGG | - | chr8.4:13967769-13967788 | MS.gene59061:intron | 35.0% |
| !! | GATGGTTCTAACAATTTGGA+AGG | - | chr8.4:13967925-13967944 | MS.gene59061:intron | 35.0% |
| !! | TGTCCAGTGATATGCTTTTT+AGG | + | chr8.4:13968689-13968708 | None:intergenic | 35.0% |
| !! | TTGGTTCTCCAAAGTCTTTT+GGG | - | chr8.4:13967902-13967921 | MS.gene59061:intron | 35.0% |
| AAATCAGAGTTACAAGCTCC+TGG | - | chr8.4:13969932-13969951 | MS.gene59061:CDS | 40.0% | |
| AAATTGCAATTACGCTCACG+GGG | - | chr8.4:13967612-13967631 | MS.gene59061:intron | 40.0% | |
| ACACCTATGTTGCATGGATA+AGG | + | chr8.4:13969408-13969427 | None:intergenic | 40.0% | |
| ACACTGTGTATACCTCCAAT+AGG | + | chr8.4:13968581-13968600 | None:intergenic | 40.0% | |
| ACCAAAAGACGAAACAGGAT+TGG | + | chr8.4:13969551-13969570 | None:intergenic | 40.0% | |
| ACCTGAACTTAGTGCAGATT+CGG | + | chr8.4:13967570-13967589 | None:intergenic | 40.0% | |
| ACTATCCTAGTGTATCCAAG+TGG | + | chr8.4:13969120-13969139 | None:intergenic | 40.0% | |
| ATAATAGCCATTGCAGCCTA+TGG | + | chr8.4:13968462-13968481 | None:intergenic | 40.0% | |
| ATACTCCACTTGGATACACT+AGG | - | chr8.4:13969112-13969131 | MS.gene59061:intron | 40.0% | |
| CACAAGTCTACTCATGACAA+AGG | - | chr8.4:13970069-13970088 | MS.gene59061:CDS | 40.0% | |
| CACTGTGTATACCTCCAATA+GGG | + | chr8.4:13968580-13968599 | None:intergenic | 40.0% | |
| CAGAAACCAAAAGACGAAAC+AGG | + | chr8.4:13969556-13969575 | None:intergenic | 40.0% | |
| CAGCTATTACACTGTTGCAT+AGG | + | chr8.4:13968647-13968666 | None:intergenic | 40.0% | |
| CATACACAACAACGATAGGA+AGG | + | chr8.4:13968341-13968360 | None:intergenic | 40.0% | |
| CTAGGTTTAGGGATGATTCT+TGG | - | chr8.4:13967842-13967861 | MS.gene59061:intron | 40.0% | |
| CTGCATAGTCGATCAAAAGA+AGG | + | chr8.4:13969001-13969020 | None:intergenic | 40.0% | |
| CTTTGTCATGAGTAGACTTG+TGG | + | chr8.4:13970071-13970090 | None:intergenic | 40.0% | |
| GAAGGTAGGAGTAGAATCAT+TGG | + | chr8.4:13970047-13970066 | None:intergenic | 40.0% | |
| GAGTGTTCTGCAATAAGCAT+TGG | - | chr8.4:13967874-13967893 | MS.gene59061:intron | 40.0% | |
| GATTATGTTCCAGCTACCAT+AGG | - | chr8.4:13968443-13968462 | MS.gene59061:intron | 40.0% | |
| GCAGCATTATCATAAGTGGA+AGG | + | chr8.4:13968558-13968577 | None:intergenic | 40.0% | |
| GCATTATCATAAGTGGAAGG+TGG | + | chr8.4:13968555-13968574 | None:intergenic | 40.0% | |
| GCTGCAATGGCTATTATATC+TGG | - | chr8.4:13968465-13968484 | MS.gene59061:intron | 40.0% | |
| GTTAAATAGCGACTATAGCG+GGG | + | chr8.4:13968745-13968764 | None:intergenic | 40.0% | |
| TAGGGCAGCATTATCATAAG+TGG | + | chr8.4:13968562-13968581 | None:intergenic | 40.0% | |
| TATCCATGCAACATAGGTGT+CGG | - | chr8.4:13969408-13969427 | MS.gene59061:intron | 40.0% | |
| TCACACTCTTACTGTACTTG+TGG | - | chr8.4:13969041-13969060 | MS.gene59061:intron | 40.0% | |
| TCTACTCATGACAAAGGAAG+AGG | - | chr8.4:13970075-13970094 | MS.gene59061:CDS | 40.0% | |
| TGATCTTCATCCCAATTTGG+TGG | + | chr8.4:13967727-13967746 | None:intergenic | 40.0% | |
| TTGTTGGATGAAGCAAACTG+CGG | + | chr8.4:13967373-13967392 | None:intergenic | 40.0% | |
| ! | ATCTGCACTAAGTTCAGGTT+TGG | - | chr8.4:13967571-13967590 | MS.gene59061:intron | 40.0% |
| ! | TCCAATCCTGTTTCGTCTTT+TGG | - | chr8.4:13969547-13969566 | MS.gene59061:CDS | 40.0% |
| ! | TGGTTCTCCAAAGTCTTTTG+GGG | - | chr8.4:13967903-13967922 | MS.gene59061:intron | 40.0% |
| ! | TGTTCTGGCTGATGAAGTAT+TGG | - | chr8.4:13969900-13969919 | MS.gene59061:CDS | 40.0% |
| ! | TTTTGATCGACTATGCAGCA+TGG | - | chr8.4:13969003-13969022 | MS.gene59061:intron | 40.0% |
| !! | CAAGAAGTATTACAACGGTG+AGG | - | chr8.4:13967774-13967793 | MS.gene59061:intron | 40.0% |
| !! | TGGGGATGGTTCTAACAATT+TGG | - | chr8.4:13967921-13967940 | MS.gene59061:intron | 40.0% |
| !!! | CGTCTTTTGGTTTCTGCTAA+TGG | - | chr8.4:13969560-13969579 | MS.gene59061:CDS | 40.0% |
| AAACATGGCATTGCAGCCTA+TGG | + | chr8.4:13968501-13968520 | None:intergenic | 45.0% | |
| AAACTGTGGCCAAGACGTTA+AGG | + | chr8.4:13969743-13969762 | None:intergenic | 45.0% | |
| AACGGTGAGGAATGTCCTTA+TGG | - | chr8.4:13967787-13967806 | MS.gene59061:intron | 45.0% | |
| AAGGTATGCGACAGAAACTG+TGG | + | chr8.4:13969757-13969776 | None:intergenic | 45.0% | |
| ACAGCAGCTAGCCAAAAATC+TGG | + | chr8.4:13968529-13968548 | None:intergenic | 45.0% | |
| ACTTCACCAAAAGCCTCAAC+AGG | - | chr8.4:13970016-13970035 | MS.gene59061:CDS | 45.0% | |
| AGGGCATATCAATCCACTAG+GGG | + | chr8.4:13967488-13967507 | None:intergenic | 45.0% | |
| AGGTACATTCCTCATTTGCG+AGG | - | chr8.4:13969622-13969641 | MS.gene59061:CDS | 45.0% | |
| AGTAGACTTGTGGTGAAGGT+AGG | + | chr8.4:13970061-13970080 | None:intergenic | 45.0% | |
| ATCATTGGCAACACCTGTTG+AGG | + | chr8.4:13970032-13970051 | None:intergenic | 45.0% | |
| ATGAGGATCCTGCTAGGTTT+AGG | - | chr8.4:13967830-13967849 | MS.gene59061:intron | 45.0% | |
| ATTCCTGACAATGGGGTTGA+TGG | + | chr8.4:13968806-13968825 | None:intergenic | 45.0% | |
| CAGACGATATTCCAACCTGT+AGG | - | chr8.4:13967338-13967357 | MS.gene59061:CDS | 45.0% | |
| CATGAGTAGACTTGTGGTGA+AGG | + | chr8.4:13970065-13970084 | None:intergenic | 45.0% | |
| CCTGAACTTAGTGCAGATTC+GGG | + | chr8.4:13967569-13967588 | None:intergenic | 45.0% | |
| GAAACGCTAGATACTCCACT+TGG | - | chr8.4:13969102-13969121 | MS.gene59061:intron | 45.0% | |
| GAACCATCCCCAAAAGACTT+TGG | + | chr8.4:13967913-13967932 | None:intergenic | 45.0% | |
| GAATCATCCCTAAACCTAGC+AGG | + | chr8.4:13967841-13967860 | None:intergenic | 45.0% | |
| GATTGATATGCCCTCCTTCA+AGG | - | chr8.4:13967494-13967513 | MS.gene59061:CDS | 45.0% | |
| GCTGAATCATCCTTGAAGGA+GGG | + | chr8.4:13967507-13967526 | None:intergenic | 45.0% | |
| GGAAGACAAAGCTGTGTCAA+TGG | - | chr8.4:13967986-13968005 | MS.gene59061:intron | 45.0% | |
| TAAAAGCAGTCACTTCGGTG+TGG | + | chr8.4:13969440-13969459 | None:intergenic | 45.0% | |
| TGAGCCACATTCCTTCAAGA+GGG | - | chr8.4:13967441-13967460 | MS.gene59061:CDS | 45.0% | |
| TGAGGATCCTGCTAGGTTTA+GGG | - | chr8.4:13967831-13967850 | MS.gene59061:intron | 45.0% | |
| TGTGTCAATGGCAGCATACA+GGG | - | chr8.4:13967998-13968017 | MS.gene59061:intron | 45.0% | |
| TTACCGACACCTATGTTGCA+TGG | + | chr8.4:13969414-13969433 | None:intergenic | 45.0% | |
| TTCTCCATGAGCAAAGTGAC+AGG | + | chr8.4:13968043-13968062 | None:intergenic | 45.0% | |
| TTCTGCGAAGACAAGGCAAA+GGG | + | chr8.4:13968314-13968333 | None:intergenic | 45.0% | |
| TTCTTCATGAGGATCCTGCT+AGG | - | chr8.4:13967824-13967843 | MS.gene59061:intron | 45.0% | |
| TTGAGCCACATTCCTTCAAG+AGG | - | chr8.4:13967440-13967459 | MS.gene59061:CDS | 45.0% | |
| TTTCTGCGAAGACAAGGCAA+AGG | + | chr8.4:13968315-13968334 | None:intergenic | 45.0% | |
| ! | AAAAGCAGTCACTTCGGTGT+GGG | + | chr8.4:13969439-13969458 | None:intergenic | 45.0% |
| ! | CTACAGGTTGGAATATCGTC+TGG | + | chr8.4:13967340-13967359 | None:intergenic | 45.0% |
| ! | GAGGGCATATCAATCCACTA+GGG | + | chr8.4:13967489-13967508 | None:intergenic | 45.0% |
| ! | GTTGAGGCTTTTGGTGAAGT+TGG | + | chr8.4:13970016-13970035 | None:intergenic | 45.0% |
| ! | TCTTCATCCCAATTTGGTGG+TGG | + | chr8.4:13967724-13967743 | None:intergenic | 45.0% |
| ! | TGATAATGCTGCCCTATTGG+AGG | - | chr8.4:13968566-13968585 | MS.gene59061:intron | 45.0% |
| ! | TTCCTGACAATGGGGTTGAT+GGG | + | chr8.4:13968805-13968824 | None:intergenic | 45.0% |
| !! | ATCTGGCTTGTTTCCACCAT+AGG | - | chr8.4:13968482-13968501 | MS.gene59061:intron | 45.0% |
| !! | TCTCCAAAGTCTTTTGGGGA+TGG | - | chr8.4:13967907-13967926 | MS.gene59061:intron | 45.0% |
| !!! | GATTTTATTTTTTTAAATAA+AGG | + | chr8.4:13969776-13969795 | None:intergenic | 5.0% |
| AAAGTGACAGGTCTCCCCAA+AGG | + | chr8.4:13968031-13968050 | None:intergenic | 50.0% | |
| AACGGCTTCAGATGGAGACA+AGG | - | chr8.4:13967695-13967714 | MS.gene59061:intron | 50.0% | |
| AAGGCAAAGGGGCAACAAAC+AGG | + | chr8.4:13968302-13968321 | None:intergenic | 50.0% | |
| AAGGCAGCCACCACCAAATT+GGG | - | chr8.4:13967714-13967733 | MS.gene59061:intron | 50.0% | |
| AAGTGACAGGTCTCCCCAAA+GGG | + | chr8.4:13968030-13968049 | None:intergenic | 50.0% | |
| AGCAATTCTCGCCCTCTTGA+AGG | + | chr8.4:13967455-13967474 | None:intergenic | 50.0% | |
| AGGCACTTTCTGCGAAGACA+AGG | + | chr8.4:13968321-13968340 | None:intergenic | 50.0% | |
| ATACAGGGAGCTGTCCCTTT+GGG | - | chr8.4:13968013-13968032 | MS.gene59061:intron | 50.0% | |
| CAAAGGGGCAACAAACAGGA+GGG | + | chr8.4:13968298-13968317 | None:intergenic | 50.0% | |
| CACTTTGCTCATGGAGAAGC+AGG | - | chr8.4:13968045-13968064 | MS.gene59061:intron | 50.0% | |
| CATGACAAAGGAAGAGGAGC+AGG | - | chr8.4:13970081-13970100 | MS.gene59061:CDS | 50.0% | |
| CCCGAATCTGCACTAAGTTC+AGG | - | chr8.4:13967566-13967585 | MS.gene59061:intron | 50.0% | |
| CTGTGTCAATGGCAGCATAC+AGG | - | chr8.4:13967997-13968016 | MS.gene59061:intron | 50.0% | |
| GCTGATAACAATCCCCCTAG+TGG | - | chr8.4:13967472-13967491 | MS.gene59061:CDS | 50.0% | |
| GGAGGCTGAATCATCCTTGA+AGG | + | chr8.4:13967511-13967530 | None:intergenic | 50.0% | |
| GGCTGAATCATCCTTGAAGG+AGG | + | chr8.4:13967508-13967527 | None:intergenic | 50.0% | |
| GGGCATATCAATCCACTAGG+GGG | + | chr8.4:13967487-13967506 | None:intergenic | 50.0% | |
| TCAGAGTTACAAGCTCCTGG+TGG | - | chr8.4:13969935-13969954 | MS.gene59061:CDS | 50.0% | |
| TCTGCGAAGACAAGGCAAAG+GGG | + | chr8.4:13968313-13968332 | None:intergenic | 50.0% | |
| TTCCAATAAGCGCTCCTTGC+TGG | + | chr8.4:13967970-13967989 | None:intergenic | 50.0% | |
| TTCCCATCAACCCCATTGTC+AGG | - | chr8.4:13968800-13968819 | MS.gene59061:intron | 50.0% | |
| TTGATCCTCGCAACGACGAA+CGG | - | chr8.4:13967677-13967696 | MS.gene59061:intron | 50.0% | |
| TTGGATGAAGCAAACTGCGG+TGG | + | chr8.4:13967370-13967389 | None:intergenic | 50.0% | |
| ! | ATAGCGGGGCTACTGCATAT+AGG | + | chr8.4:13968731-13968750 | None:intergenic | 50.0% |
| ! | ATGCTGCTTGTTCCTCGGTT+TGG | + | chr8.4:13967535-13967554 | None:intergenic | 50.0% |
| ! | GCAACACCTGTTGAGGCTTT+TGG | + | chr8.4:13970025-13970044 | None:intergenic | 50.0% |
| ! | GGAGGGCATATCAATCCACT+AGG | + | chr8.4:13967490-13967509 | None:intergenic | 50.0% |
| !! | GAGACCTGTCACTTTGCTCA+TGG | - | chr8.4:13968036-13968055 | MS.gene59061:intron | 50.0% |
| ACTAGCTCCTGCCAATTCCG+CGG | + | chr8.4:13967658-13967677 | None:intergenic | 55.0% | |
| ATGAGATAAGGCAGCCACCG+CGG | - | chr8.4:13967638-13967657 | MS.gene59061:intron | 55.0% | |
| ATTCAGCCTCCACCAAACCG+AGG | - | chr8.4:13967520-13967539 | MS.gene59061:CDS | 55.0% | |
| CAACGACGAACGGCTTCAGA+TGG | - | chr8.4:13967687-13967706 | MS.gene59061:intron | 55.0% | |
| CAAGGCAGCCACCACCAAAT+TGG | - | chr8.4:13967713-13967732 | MS.gene59061:intron | 55.0% | |
| CATACAGGGAGCTGTCCCTT+TGG | - | chr8.4:13968012-13968031 | MS.gene59061:intron | 55.0% | |
| CATGGCATTGCAGCCTATGG+TGG | + | chr8.4:13968498-13968517 | None:intergenic | 55.0% | |
| CCAGCTACCATAGGCTGCAA+TGG | - | chr8.4:13968452-13968471 | MS.gene59061:intron | 55.0% | |
| CCATTGCAGCCTATGGTAGC+TGG | + | chr8.4:13968455-13968474 | None:intergenic | 55.0% | |
| CTCACGGGGCTGATGAGATA+AGG | - | chr8.4:13967626-13967645 | MS.gene59061:intron | 55.0% | |
| CTCGCCCTCTTGAAGGAATG+TGG | + | chr8.4:13967448-13967467 | None:intergenic | 55.0% | |
| GAGTTACAAGCTCCTGGTGG+AGG | - | chr8.4:13969938-13969957 | MS.gene59061:CDS | 55.0% | |
| GCAAAGGGGCAACAAACAGG+AGG | + | chr8.4:13968299-13968318 | None:intergenic | 55.0% | |
| GGTGGTGACATCCTACAGGT+TGG | + | chr8.4:13967352-13967371 | None:intergenic | 55.0% | |
| TACAGGGAGCTGTCCCTTTG+GGG | - | chr8.4:13968014-13968033 | MS.gene59061:intron | 55.0% | |
| TCAGCTTCAATGCCTCCACC+AGG | + | chr8.4:13969953-13969972 | None:intergenic | 55.0% | |
| !! | AGCCAGCAAGGAGCGCTTAT+TGG | - | chr8.4:13967965-13967984 | MS.gene59061:intron | 55.0% |
| !! | CTGCTTGTTCCTCGGTTTGG+TGG | + | chr8.4:13967532-13967551 | None:intergenic | 55.0% |
| !! | CTTGTTCCTCGGTTTGGTGG+AGG | + | chr8.4:13967529-13967548 | None:intergenic | 55.0% |
| CTGCGGTGGTGACATCCTAC+AGG | + | chr8.4:13967356-13967375 | None:intergenic | 60.0% | |
| GGGCTGTGAACAAGCCAGCA+AGG | - | chr8.4:13967953-13967972 | MS.gene59061:intron | 60.0% | |
| TAAGGCAGCCACCGCGGAAT+TGG | - | chr8.4:13967644-13967663 | MS.gene59061:intron | 60.0% | |
| TGAAGCCGTTCGTCGTTGCG+AGG | + | chr8.4:13967685-13967704 | None:intergenic | 60.0% | |
| AGCTCCTGCCAATTCCGCGG+TGG | + | chr8.4:13967655-13967674 | None:intergenic | 65.0% | |
| GCAGCCACCGCGGAATTGGC+AGG | - | chr8.4:13967648-13967667 | MS.gene59061:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 13967328 | 13970180 | 13967328 | ID=MS.gene59061 |
| chr8.4 | mRNA | 13967328 | 13970180 | 13967328 | ID=MS.gene59061.t1;Parent=MS.gene59061 |
| chr8.4 | exon | 13969442 | 13970180 | 13969442 | ID=MS.gene59061.t1.exon1;Parent=MS.gene59061.t1 |
| chr8.4 | CDS | 13969442 | 13970180 | 13969442 | ID=cds.MS.gene59061.t1;Parent=MS.gene59061.t1 |
| chr8.4 | exon | 13967328 | 13967569 | 13967328 | ID=MS.gene59061.t1.exon2;Parent=MS.gene59061.t1 |
| chr8.4 | CDS | 13967328 | 13967569 | 13967328 | ID=cds.MS.gene59061.t1;Parent=MS.gene59061.t1 |
| Gene Sequence |
| Protein sequence |
