Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59217.t1 | XP_003592112.1 | 85.4 | 568 | 80 | 1 | 1 | 568 | 1 | 565 | 2.00E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59217.t1 | Q39117 | 56.3 | 494 | 166 | 6 | 21 | 468 | 1 | 490 | 3.2e-96 | 354.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59217.t1 | G7ICY9 | 85.4 | 568 | 80 | 1 | 1 | 568 | 1 | 565 | 1.4e-206 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59217.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59217.t1 | MTR_1g098870 | 96.831 | 568 | 15 | 1 | 1 | 568 | 1 | 565 | 0.0 | 1143 |
| MS.gene59217.t1 | MTR_1g098900 | 45.923 | 601 | 204 | 15 | 3 | 500 | 2 | 584 | 4.55e-153 | 453 |
| MS.gene59217.t1 | MTR_6g035370 | 54.167 | 288 | 111 | 3 | 52 | 318 | 52 | 339 | 1.12e-73 | 247 |
| MS.gene59217.t1 | MTR_6g035370 | 58.642 | 162 | 61 | 2 | 363 | 521 | 449 | 607 | 2.89e-46 | 172 |
| MS.gene59217.t1 | MTR_6g035370 | 43.617 | 94 | 52 | 1 | 51 | 143 | 460 | 553 | 1.05e-18 | 90.1 |
| MS.gene59217.t1 | MTR_6g035370 | 41.379 | 87 | 50 | 1 | 375 | 461 | 55 | 140 | 6.88e-17 | 84.7 |
| MS.gene59217.t1 | MTR_1g492790 | 30.118 | 425 | 222 | 13 | 36 | 432 | 95 | 472 | 1.72e-46 | 171 |
| MS.gene59217.t1 | MTR_1g492790 | 38.129 | 139 | 81 | 3 | 329 | 466 | 71 | 205 | 4.23e-20 | 94.0 |
| MS.gene59217.t1 | MTR_2g026725 | 37.860 | 243 | 123 | 4 | 241 | 463 | 116 | 350 | 1.01e-43 | 160 |
| MS.gene59217.t1 | MTR_2g026725 | 39.091 | 110 | 59 | 2 | 54 | 162 | 261 | 363 | 4.93e-16 | 80.5 |
| MS.gene59217.t1 | MTR_1g060990 | 34.354 | 294 | 161 | 5 | 55 | 343 | 131 | 397 | 2.15e-41 | 156 |
| MS.gene59217.t1 | MTR_1g060990 | 42.202 | 109 | 61 | 2 | 364 | 471 | 120 | 227 | 3.85e-20 | 94.4 |
| MS.gene59217.t1 | MTR_1g081180 | 33.582 | 268 | 127 | 6 | 239 | 464 | 251 | 509 | 1.99e-33 | 134 |
| MS.gene59217.t1 | MTR_1g081180 | 40.426 | 94 | 53 | 2 | 53 | 143 | 416 | 509 | 4.16e-14 | 75.5 |
| MS.gene59217.t1 | MTR_7g114860 | 31.174 | 247 | 142 | 7 | 240 | 465 | 241 | 480 | 3.20e-29 | 121 |
| MS.gene59217.t1 | MTR_7g114860 | 43.434 | 99 | 46 | 2 | 55 | 143 | 381 | 479 | 4.66e-16 | 81.3 |
| MS.gene59217.t1 | MTR_5g026540 | 30.075 | 133 | 81 | 3 | 335 | 465 | 10 | 132 | 1.40e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59217.t1 | AT1G76890 | 49.797 | 492 | 181 | 10 | 50 | 496 | 36 | 506 | 3.60e-142 | 423 |
| MS.gene59217.t1 | AT1G76880 | 52.183 | 481 | 194 | 8 | 50 | 497 | 56 | 533 | 2.17e-137 | 412 |
| MS.gene59217.t1 | AT5G03680 | 34.038 | 426 | 235 | 12 | 55 | 462 | 119 | 516 | 4.03e-60 | 210 |
| MS.gene59217.t1 | AT5G28300 | 37.838 | 259 | 127 | 6 | 240 | 464 | 300 | 558 | 4.51e-40 | 154 |
| MS.gene59217.t1 | AT3G10000 | 32.239 | 335 | 161 | 10 | 12 | 323 | 56 | 347 | 1.04e-38 | 148 |
| MS.gene59217.t1 | AT3G10000 | 35.915 | 142 | 81 | 3 | 343 | 477 | 53 | 191 | 7.07e-21 | 96.3 |
| MS.gene59217.t1 | AT1G33240 | 68.132 | 91 | 29 | 0 | 375 | 465 | 435 | 525 | 1.02e-37 | 147 |
| MS.gene59217.t1 | AT1G33240 | 68.132 | 91 | 29 | 0 | 375 | 465 | 396 | 486 | 1.29e-37 | 147 |
| MS.gene59217.t1 | AT1G33240 | 43.678 | 87 | 48 | 1 | 55 | 140 | 396 | 482 | 1.81e-16 | 83.2 |
| MS.gene59217.t1 | AT1G33240 | 68.132 | 91 | 29 | 0 | 375 | 465 | 435 | 525 | 2.23e-37 | 147 |
| MS.gene59217.t1 | AT3G10000 | 31.138 | 334 | 156 | 10 | 12 | 323 | 56 | 337 | 5.64e-35 | 137 |
| MS.gene59217.t1 | AT3G10000 | 34.043 | 141 | 75 | 3 | 343 | 477 | 53 | 181 | 8.18e-18 | 87.0 |
| MS.gene59217.t1 | AT5G47660 | 31.718 | 227 | 140 | 4 | 238 | 463 | 177 | 389 | 1.61e-27 | 115 |
| MS.gene59217.t1 | AT5G47660 | 41.304 | 92 | 51 | 2 | 55 | 145 | 303 | 392 | 4.14e-13 | 71.6 |
| MS.gene59217.t1 | AT3G25990 | 32.000 | 100 | 67 | 1 | 376 | 474 | 55 | 154 | 5.74e-11 | 65.1 |
Find 118 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATAGAAAGAAGAGAAAA+TGG | 0.189121 | 1.3:+67952790 | MS.gene59217:CDS |
| GAACCAAAGTATCAAGAAAA+TGG | 0.192524 | 1.3:+67953269 | MS.gene59217:CDS |
| TTCATGTTTGGCAAAGAATT+TGG | 0.196846 | 1.3:-67952699 | None:intergenic |
| TTATTATTTGGTTGTGGTTT+TGG | 0.205052 | 1.3:-67952546 | None:intergenic |
| GAAAATGGAAGGACTATTTC+AGG | 0.211748 | 1.3:+67952805 | MS.gene59217:CDS |
| GGAGGTCTCCATTGTTGTTC+TGG | 0.263104 | 1.3:-67953572 | None:intergenic |
| TCTTCCCACAATGGTGCTTT+TGG | 0.285818 | 1.3:-67953293 | None:intergenic |
| GAATTTCAAAATATGAATAA+TGG | 0.294434 | 1.3:+67953155 | MS.gene59217:CDS |
| GAGCTGCTGATGATCTTTCT+TGG | 0.298176 | 1.3:-67952980 | None:intergenic |
| GTGAAGTTCATGCTCTAATA+AGG | 0.301161 | 1.3:+67953231 | MS.gene59217:CDS |
| GCTTCAAGTTCATTAAAATA+AGG | 0.305695 | 1.3:-67953452 | None:intergenic |
| GATGAGAGTGTGTTATTATT+TGG | 0.316885 | 1.3:-67952558 | None:intergenic |
| TCAAGAGAGCCAATGTTTCT+TGG | 0.332675 | 1.3:-67951435 | None:intergenic |
| GAGAATAGGTTGTTCATGTT+TGG | 0.353362 | 1.3:-67952711 | None:intergenic |
| TTAACGGTGGTGGAGGAAAT+AGG | 0.356278 | 1.3:+67951404 | MS.gene59217:CDS |
| AACTTCTTCTTCCACAGCTT+CGG | 0.361209 | 1.3:+67952749 | MS.gene59217:CDS |
| GAAACGAATTAGAACCAAAA+AGG | 0.368019 | 1.3:-67953505 | None:intergenic |
| TATTGTTTGTGTGGTTTCAT+TGG | 0.368826 | 1.3:-67952595 | None:intergenic |
| CTTGAAGATAAGATCAGATA+TGG | 0.382626 | 1.3:+67951453 | MS.gene59217:CDS |
| GCTGGCGGTGGTTGTGGTGG+TGG | 0.395680 | 1.3:-67953050 | None:intergenic |
| GTTTCATTGGGATTTGTTGT+TGG | 0.399933 | 1.3:-67952582 | None:intergenic |
| AAGTCTTAAGGGTCCACTTT+GGG | 0.401378 | 1.3:+67951495 | MS.gene59217:CDS |
| TCTGGTGCTGGCGGTGGTTG+TGG | 0.405288 | 1.3:-67953056 | None:intergenic |
| AACGAATGTGGTAGGGTTTG+TGG | 0.409596 | 1.3:-67952643 | None:intergenic |
| TGAGAATATTGTGCCGGTTA+CGG | 0.409713 | 1.3:+67951306 | MS.gene59217:CDS |
| GAAGAGAAAGGAAGAGAGAT+TGG | 0.412336 | 1.3:+67951349 | MS.gene59217:CDS |
| CACAGCTTCGGACGAAGACT+TGG | 0.417011 | 1.3:+67952761 | MS.gene59217:CDS |
| TGTTCTGGCTGCACCATCAA+TGG | 0.420164 | 1.3:-67953557 | None:intergenic |
| ATTGTTTGTGTGGTTTCATT+GGG | 0.421975 | 1.3:-67952594 | None:intergenic |
| ATGAATAATGGTTACAAAAG+TGG | 0.422836 | 1.3:+67953167 | MS.gene59217:CDS |
| TGCTTTGAGAATTCAAGAAA+TGG | 0.425606 | 1.3:+67952926 | MS.gene59217:CDS |
| AATTCAACAATGTTGTTGTT+TGG | 0.432386 | 1.3:-67953137 | None:intergenic |
| TTTGGAACATTGTTGTTGTT+AGG | 0.434536 | 1.3:-67952681 | None:intergenic |
| CACTTTGGGAAGAGGTTTCA+AGG | 0.436137 | 1.3:+67951509 | MS.gene59217:CDS |
| AACAAATAAACTTTCATCAA+TGG | 0.444317 | 1.3:+67953766 | MS.gene59217:CDS |
| GACAGCTCTGGTGCTGGCGG+TGG | 0.444859 | 1.3:-67953062 | None:intergenic |
| AAGTTGTTGTGGTTGAGAAT+AGG | 0.446298 | 1.3:-67952725 | None:intergenic |
| AACCAAAGTATCAAGAAAAT+GGG | 0.447699 | 1.3:+67953270 | MS.gene59217:CDS |
| TGAAGAGACAAGGATACAAT+AGG | 0.451641 | 1.3:+67953330 | MS.gene59217:CDS |
| ATCAATATTAACGGTGGTGG+AGG | 0.457605 | 1.3:+67951397 | MS.gene59217:CDS |
| GTGCTTCTCCTTCTCCATCA+AGG | 0.462199 | 1.3:+67953198 | MS.gene59217:CDS |
| GAGAGCCAATGTTTCTTGGC+GGG | 0.464598 | 1.3:-67951431 | None:intergenic |
| AATGGTTACAAAAGTGGTAA+TGG | 0.466799 | 1.3:+67953173 | MS.gene59217:CDS |
| CACGGAGACAGCTCTGGTGC+TGG | 0.472655 | 1.3:-67953068 | None:intergenic |
| TAAGGGTCCACTTTGGGAAG+AGG | 0.472903 | 1.3:+67951501 | MS.gene59217:CDS |
| TTTCGTGATTCAAGTCTTAA+GGG | 0.478392 | 1.3:+67951484 | MS.gene59217:CDS |
| AAGATGAATATCAATATTAA+CGG | 0.478883 | 1.3:+67951388 | MS.gene59217:CDS |
| ACATTGTTGTTGTTAGGTTG+TGG | 0.486612 | 1.3:-67952675 | None:intergenic |
| AGGAAGAGAGATTGGTGGTG+AGG | 0.490326 | 1.3:+67951357 | MS.gene59217:CDS |
| TGAGACGATGGAGCCATTGA+TGG | 0.495814 | 1.3:+67953544 | MS.gene59217:CDS |
| CAAGTCTTAAGGGTCCACTT+TGG | 0.495967 | 1.3:+67951494 | MS.gene59217:CDS |
| ATCTTCTTCTATATGCAGCT+TGG | 0.501249 | 1.3:+67951250 | None:intergenic |
| GGTGCTGGCGGTGGTTGTGG+TGG | 0.502284 | 1.3:-67953053 | None:intergenic |
| GCACCCTCTTCAAATGTAGT+TGG | 0.502758 | 1.3:-67953593 | None:intergenic |
| GTCTGACACGGAGACAGCTC+TGG | 0.505511 | 1.3:-67953074 | None:intergenic |
| AATATCAATATTAACGGTGG+TGG | 0.506001 | 1.3:+67951394 | MS.gene59217:CDS |
| CCCTCTTCAAATGTAGTTGG+AGG | 0.507603 | 1.3:-67953590 | None:intergenic |
| TGTAGGAAACTAGCTGAACT+TGG | 0.509833 | 1.3:+67952360 | MS.gene59217:intron |
| GTCTCCGTGTCAGACAGCTC+TGG | 0.513072 | 1.3:+67953082 | MS.gene59217:CDS |
| TAGAAAGAAGAGAAAATGGA+AGG | 0.520671 | 1.3:+67952794 | MS.gene59217:CDS |
| GAAGGAGAAACGAATGTGGT+AGG | 0.521206 | 1.3:-67952651 | None:intergenic |
| TGGGCCAAAAGCACCATTGT+GGG | 0.525939 | 1.3:+67953289 | MS.gene59217:CDS |
| AGGGTTTGTGGATGGAACAG+TGG | 0.526949 | 1.3:-67952631 | None:intergenic |
| CAAGTCTTCGTCCGAAGCTG+TGG | 0.529430 | 1.3:-67952760 | None:intergenic |
| GATAGCATGGAAGAAGATGA+AGG | 0.531181 | 1.3:+67953713 | MS.gene59217:CDS |
| AGTGTGTTATTATTTGGTTG+TGG | 0.532548 | 1.3:-67952552 | None:intergenic |
| GACATATGATATTGTTTGTG+TGG | 0.533682 | 1.3:-67952604 | None:intergenic |
| GTGCCGGTTACGGCGCAAAA+CGG | 0.534516 | 1.3:+67951316 | MS.gene59217:CDS |
| ACGGCGCAAAACGGAGGCGG+CGG | 0.535961 | 1.3:+67951325 | MS.gene59217:CDS |
| TTTGGCCACCTTGATGGAGA+AGG | 0.538200 | 1.3:-67953206 | None:intergenic |
| TATCACAAAAGAACCAAAGA+AGG | 0.539271 | 1.3:+67952435 | MS.gene59217:CDS |
| CTCCGGTGAGAATATTGTGC+CGG | 0.540412 | 1.3:+67951300 | MS.gene59217:CDS |
| ATATGAAGATGGAGATAGCA+TGG | 0.544034 | 1.3:+67953700 | MS.gene59217:CDS |
| AGAGCCAATGTTTCTTGGCG+GGG | 0.547860 | 1.3:-67951430 | None:intergenic |
| TTGTTGTCACAACTTCATAA+CGG | 0.553559 | 1.3:-67953748 | None:intergenic |
| CTTGAAACCTCTTCCCAAAG+TGG | 0.553632 | 1.3:-67951508 | None:intergenic |
| GGTAGGAGTGGAAAATCAGA+AGG | 0.553996 | 1.3:+67952456 | MS.gene59217:CDS |
| TGGTGATGCAACAGTAATGA+TGG | 0.554542 | 1.3:+67951270 | MS.gene59217:CDS |
| GAGAAAGGAAGAGAGATTGG+TGG | 0.555860 | 1.3:+67951352 | MS.gene59217:CDS |
| TTGTTGTTAGGTTGTGGTGA+AGG | 0.559792 | 1.3:-67952669 | None:intergenic |
| GGAGGCGGCGGTGAAGAGAA+AGG | 0.561124 | 1.3:+67951337 | MS.gene59217:CDS |
| GTTACGGCGCAAAACGGAGG+CGG | 0.565758 | 1.3:+67951322 | MS.gene59217:CDS |
| AACATGGATGAATATGAAGA+TGG | 0.566553 | 1.3:+67953689 | MS.gene59217:CDS |
| AGAAGAAGTTGAAGTTGTTG+TGG | 0.571331 | 1.3:-67952736 | None:intergenic |
| AAGGAGAAACGAATGTGGTA+GGG | 0.571339 | 1.3:-67952650 | None:intergenic |
| AGAGAGCCAATGTTTCTTGG+CGG | 0.579042 | 1.3:-67951432 | None:intergenic |
| CAAATACTACAAGAAAATGA+AGG | 0.579174 | 1.3:+67953391 | MS.gene59217:CDS |
| TGAAGGAAAGTAACAAGCAA+AGG | 0.584180 | 1.3:+67953408 | MS.gene59217:CDS |
| GTGGCCCCGCCAAGAAACAT+TGG | 0.588347 | 1.3:+67951426 | MS.gene59217:CDS |
| GGAGACAGCTCTGGTGCTGG+CGG | 0.588687 | 1.3:-67953065 | None:intergenic |
| GATACAATAGGAATGCGAAA+AGG | 0.589387 | 1.3:+67953342 | MS.gene59217:CDS |
| ATGGGCCAAAAGCACCATTG+TGG | 0.595427 | 1.3:+67953288 | MS.gene59217:CDS |
| TGATGAAGAAGATGAAAACA+TGG | 0.596066 | 1.3:+67953673 | MS.gene59217:CDS |
| AGAACCAAAGAAGGTAGGAG+TGG | 0.596126 | 1.3:+67952444 | MS.gene59217:CDS |
| ACCTCCAACTACATTTGAAG+AGG | 0.596492 | 1.3:+67953589 | MS.gene59217:CDS |
| AAGATAAGATCAGATATGGA+TGG | 0.598844 | 1.3:+67951457 | MS.gene59217:CDS |
| AATGCAAAAGAAGTTTCTTG+AGG | 0.603327 | 1.3:+67952863 | MS.gene59217:CDS |
| ACAAGTGCTTGCAAAACAAG+AGG | 0.605374 | 1.3:+67952839 | MS.gene59217:CDS |
| GTAATGATGGAGACTTGCTC+CGG | 0.605776 | 1.3:+67951283 | MS.gene59217:CDS |
| TAGAAGCTCAAAGAAGTGCA+AGG | 0.606310 | 1.3:+67952389 | MS.gene59217:CDS |
| ACAAAAGAACCAAAGAAGGT+AGG | 0.608634 | 1.3:+67952439 | MS.gene59217:CDS |
| AACCGGCACAATATTCTCAC+CGG | 0.619642 | 1.3:-67951302 | None:intergenic |
| TGGTGCAGCCAGAACAACAA+TGG | 0.627830 | 1.3:+67953564 | MS.gene59217:CDS |
| CCGGTTACGGCGCAAAACGG+AGG | 0.631559 | 1.3:+67951319 | MS.gene59217:CDS |
| GCAAAAGAAGAAGATGACAA+TGG | 0.642786 | 1.3:+67953641 | MS.gene59217:CDS |
| AGCATGGAAGAAGATGAAGG+AGG | 0.648293 | 1.3:+67953716 | MS.gene59217:CDS |
| ATGAATATCAATATTAACGG+TGG | 0.649447 | 1.3:+67951391 | MS.gene59217:CDS |
| CATGAAGTCAAATGAGACGA+TGG | 0.663039 | 1.3:+67953532 | MS.gene59217:CDS |
| TACATTTGAAGAGGGTGCTG+TGG | 0.663974 | 1.3:+67953598 | MS.gene59217:CDS |
| CCTCCAACTACATTTGAAGA+GGG | 0.665021 | 1.3:+67953590 | MS.gene59217:CDS |
| GGTTACAAAAGTGGTAATGG+TGG | 0.667767 | 1.3:+67953176 | MS.gene59217:CDS |
| GCTGAAATATCTTCCCACAA+TGG | 0.669344 | 1.3:-67953302 | None:intergenic |
| AATGTGGTAGGGTTTGTGGA+TGG | 0.673197 | 1.3:-67952639 | None:intergenic |
| CTTCTCCTTCTCCATCAAGG+TGG | 0.673995 | 1.3:+67953201 | MS.gene59217:CDS |
| TCAGCTGCAATGAAGAGACA+AGG | 0.690286 | 1.3:+67953320 | MS.gene59217:CDS |
| GATGCCAGAGCTGTCTGACA+CGG | 0.707672 | 1.3:-67953086 | None:intergenic |
| TGGTGAAGGAGAAACGAATG+TGG | 0.713404 | 1.3:-67952655 | None:intergenic |
| ACGGTGGTGGAGGAAATAGG+TGG | 0.747281 | 1.3:+67951407 | MS.gene59217:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATTATATA+TGG | - | chr1.3:67951928-67951947 | None:intergenic | 0.0% |
| !!! | ATATATAATTTTTTTTTTTT+TGG | + | chr1.3:67951927-67951946 | MS.gene59217:intron | 0.0% |
| !! | TTAAACTTAAGTAATTTAAT+TGG | - | chr1.3:67951983-67952002 | None:intergenic | 10.0% |
| !!! | GTGTTTATTTTTTTTTTTTT+TGG | + | chr1.3:67952123-67952142 | MS.gene59217:intron | 10.0% |
| !! | AAGATGAATATCAATATTAA+CGG | + | chr1.3:67951388-67951407 | MS.gene59217:CDS | 15.0% |
| !! | ACAAAGTAATAAAAATTAGA+TGG | - | chr1.3:67952052-67952071 | None:intergenic | 15.0% |
| !! | GAATTTCAAAATATGAATAA+TGG | + | chr1.3:67953155-67953174 | MS.gene59217:CDS | 15.0% |
| !! | TAATTGATCAAAAAATCTAT+AGG | - | chr1.3:67952487-67952506 | None:intergenic | 15.0% |
| !! | AAAAGTAAAAATTTGTCATG+AGG | - | chr1.3:67952192-67952211 | None:intergenic | 20.0% |
| !! | AACAAATAAACTTTCATCAA+TGG | + | chr1.3:67953766-67953785 | MS.gene59217:CDS | 20.0% |
| !! | AGTAATAAAAATTAGATGGA+AGG | - | chr1.3:67952048-67952067 | None:intergenic | 20.0% |
| !! | CTTATAAACAAGAAAATGAA+AGG | - | chr1.3:67951611-67951630 | None:intergenic | 20.0% |
| !!! | TTTGTGTGTTTCTTATTTAT+TGG | + | chr1.3:67952067-67952086 | MS.gene59217:intron | 20.0% |
| !!! | TTTTACTTTTTTTACGTGAA+AGG | + | chr1.3:67952202-67952221 | MS.gene59217:intron | 20.0% |
| !!! | TTTTTCTTTTCCTTTTTCAA+TGG | + | chr1.3:67952233-67952252 | MS.gene59217:intron | 20.0% |
| !!! | TTTTTTTTTTCCTTCTGAAA+AGG | + | chr1.3:67951748-67951767 | MS.gene59217:intron | 20.0% |
| ! | AAAAATAAACACATGAAGCT+AGG | - | chr1.3:67952115-67952134 | None:intergenic | 25.0% |
| ! | AGTATAGAAAGAAGAGAAAA+TGG | + | chr1.3:67952790-67952809 | MS.gene59217:CDS | 25.0% |
| ! | ATGAATAATGGTTACAAAAG+TGG | + | chr1.3:67953167-67953186 | MS.gene59217:CDS | 25.0% |
| ! | ATGAATATCAATATTAACGG+TGG | + | chr1.3:67951391-67951410 | MS.gene59217:CDS | 25.0% |
| ! | CAAATACTACAAGAAAATGA+AGG | + | chr1.3:67953391-67953410 | MS.gene59217:CDS | 25.0% |
| ! | CCTACATGTATATATATAGA+GGG | - | chr1.3:67952346-67952365 | None:intergenic | 25.0% |
| ! | GTTAGTATATCCATTGAAAA+AGG | - | chr1.3:67952246-67952265 | None:intergenic | 25.0% |
| ! | TCCTACATGTATATATATAG+AGG | - | chr1.3:67952347-67952366 | None:intergenic | 25.0% |
| !! | AACCAAAGTATCAAGAAAAT+GGG | + | chr1.3:67953270-67953289 | MS.gene59217:CDS | 25.0% |
| !! | AATTCAACAATGTTGTTGTT+TGG | - | chr1.3:67953140-67953159 | None:intergenic | 25.0% |
| !! | CAAAAACTGATTGGTTAATT+TGG | - | chr1.3:67951674-67951693 | None:intergenic | 25.0% |
| !! | CAAATTAACCAATCAGTTTT+TGG | + | chr1.3:67951672-67951691 | MS.gene59217:intron | 25.0% |
| !! | GCTTCAAGTTCATTAAAATA+AGG | - | chr1.3:67953455-67953474 | None:intergenic | 25.0% |
| !! | TATTTATTGGTCACTCTTTT+AGG | + | chr1.3:67952080-67952099 | MS.gene59217:intron | 25.0% |
| !! | TTATTATTTGGTTGTGGTTT+TGG | - | chr1.3:67952549-67952568 | None:intergenic | 25.0% |
| !! | TTCAGTTATCTTAGATTTTG+AGG | + | chr1.3:67951805-67951824 | MS.gene59217:intron | 25.0% |
| !!! | CATCTTCTTCAACTTTTTTT+AGG | + | chr1.3:67952012-67952031 | MS.gene59217:intron | 25.0% |
| AACATGGATGAATATGAAGA+TGG | + | chr1.3:67953689-67953708 | MS.gene59217:CDS | 30.0% | |
| AAGATAAGATCAGATATGGA+TGG | + | chr1.3:67951457-67951476 | MS.gene59217:CDS | 30.0% | |
| AATAGGTTCCAAAAACTGAT+TGG | - | chr1.3:67951683-67951702 | None:intergenic | 30.0% | |
| AATATCAATATTAACGGTGG+TGG | + | chr1.3:67951394-67951413 | MS.gene59217:CDS | 30.0% | |
| AATGCAAAAGAAGTTTCTTG+AGG | + | chr1.3:67952863-67952882 | MS.gene59217:CDS | 30.0% | |
| AATGGTTACAAAAGTGGTAA+TGG | + | chr1.3:67953173-67953192 | MS.gene59217:CDS | 30.0% | |
| ATCTTATTCTCAAGTGTATG+AGG | + | chr1.3:67951776-67951795 | MS.gene59217:intron | 30.0% | |
| ATTGTTTGTGTGGTTTCATT+GGG | - | chr1.3:67952597-67952616 | None:intergenic | 30.0% | |
| CCCTCTATATATATACATGT+AGG | + | chr1.3:67952343-67952362 | MS.gene59217:intron | 30.0% | |
| CTTGAAGATAAGATCAGATA+TGG | + | chr1.3:67951453-67951472 | MS.gene59217:CDS | 30.0% | |
| GAAACGAATTAGAACCAAAA+AGG | - | chr1.3:67953508-67953527 | None:intergenic | 30.0% | |
| GACATATGATATTGTTTGTG+TGG | - | chr1.3:67952607-67952626 | None:intergenic | 30.0% | |
| GTATATATATAGAGGGATCA+AGG | - | chr1.3:67952339-67952358 | None:intergenic | 30.0% | |
| GTCAAAAAAAGCTCTTTGAT+TGG | + | chr1.3:67951720-67951739 | MS.gene59217:intron | 30.0% | |
| TAGAAAGAAGAGAAAATGGA+AGG | + | chr1.3:67952794-67952813 | MS.gene59217:CDS | 30.0% | |
| TATCACAAAAGAACCAAAGA+AGG | + | chr1.3:67952435-67952454 | MS.gene59217:CDS | 30.0% | |
| TATTGTTTGTGTGGTTTCAT+TGG | - | chr1.3:67952598-67952617 | None:intergenic | 30.0% | |
| TGATGAAGAAGATGAAAACA+TGG | + | chr1.3:67953673-67953692 | MS.gene59217:CDS | 30.0% | |
| TTCATGTTTGGCAAAGAATT+TGG | - | chr1.3:67952702-67952721 | None:intergenic | 30.0% | |
| TTGTTGTCACAACTTCATAA+CGG | - | chr1.3:67953751-67953770 | None:intergenic | 30.0% | |
| TTTCGTGATTCAAGTCTTAA+GGG | + | chr1.3:67951484-67951503 | MS.gene59217:CDS | 30.0% | |
| ! | AACAAAACACAGAACCTTTT+TGG | + | chr1.3:67953491-67953510 | MS.gene59217:CDS | 30.0% |
| ! | AAGATATATGCCTTTTCAGA+AGG | - | chr1.3:67951761-67951780 | None:intergenic | 30.0% |
| ! | AGTGTGTTATTATTTGGTTG+TGG | - | chr1.3:67952555-67952574 | None:intergenic | 30.0% |
| ! | GAAAAGGTGCAAAGAAAAAT+GGG | + | chr1.3:67953358-67953377 | MS.gene59217:CDS | 30.0% |
| ! | GAACCAAAGTATCAAGAAAA+TGG | + | chr1.3:67953269-67953288 | MS.gene59217:CDS | 30.0% |
| ! | GATGAGAGTGTGTTATTATT+TGG | - | chr1.3:67952561-67952580 | None:intergenic | 30.0% |
| ! | TTTGGAACATTGTTGTTGTT+AGG | - | chr1.3:67952684-67952703 | None:intergenic | 30.0% |
| ! | TTTTCGTGATTCAAGTCTTA+AGG | + | chr1.3:67951483-67951502 | MS.gene59217:CDS | 30.0% |
| !! | TGCTTTGAGAATTCAAGAAA+TGG | + | chr1.3:67952926-67952945 | MS.gene59217:CDS | 30.0% |
| AAGTTGTTGTGGTTGAGAAT+AGG | - | chr1.3:67952728-67952747 | None:intergenic | 35.0% | |
| ACAAAAGAACCAAAGAAGGT+AGG | + | chr1.3:67952439-67952458 | MS.gene59217:CDS | 35.0% | |
| AGAAGAAGTTGAAGTTGTTG+TGG | - | chr1.3:67952739-67952758 | None:intergenic | 35.0% | |
| ATATGAAGATGGAGATAGCA+TGG | + | chr1.3:67953700-67953719 | MS.gene59217:CDS | 35.0% | |
| GAAAATGGAAGGACTATTTC+AGG | + | chr1.3:67952805-67952824 | MS.gene59217:CDS | 35.0% | |
| GAGAATAGGTTGTTCATGTT+TGG | - | chr1.3:67952714-67952733 | None:intergenic | 35.0% | |
| GATACAATAGGAATGCGAAA+AGG | + | chr1.3:67953342-67953361 | MS.gene59217:CDS | 35.0% | |
| GCAAAAGAAGAAGATGACAA+TGG | + | chr1.3:67953641-67953660 | MS.gene59217:CDS | 35.0% | |
| GCATTTCTCCAAAAATTGTC+TGG | + | chr1.3:67953023-67953042 | MS.gene59217:CDS | 35.0% | |
| GTGAAGTTCATGCTCTAATA+AGG | + | chr1.3:67953231-67953250 | MS.gene59217:CDS | 35.0% | |
| TGAAGAGACAAGGATACAAT+AGG | + | chr1.3:67953330-67953349 | MS.gene59217:CDS | 35.0% | |
| TGAAGGAAAGTAACAAGCAA+AGG | + | chr1.3:67953408-67953427 | MS.gene59217:CDS | 35.0% | |
| TTCTTCTATCTGAATCTTGC+TGG | + | chr1.3:67951867-67951886 | MS.gene59217:intron | 35.0% | |
| ! | ACATTGTTGTTGTTAGGTTG+TGG | - | chr1.3:67952678-67952697 | None:intergenic | 35.0% |
| ! | CGAAAAGGTGCAAAGAAAAA+TGG | + | chr1.3:67953357-67953376 | MS.gene59217:CDS | 35.0% |
| !! | AGAGCATGAACTTCACTTTT+TGG | - | chr1.3:67953227-67953246 | None:intergenic | 35.0% |
| !! | GTTTCATTGGGATTTGTTGT+TGG | - | chr1.3:67952585-67952604 | None:intergenic | 35.0% |
| !!! | TATTTGGTTGTGGTTTTGGA+TGG | - | chr1.3:67952545-67952564 | None:intergenic | 35.0% |
| AACTTCTTCTTCCACAGCTT+CGG | + | chr1.3:67952749-67952768 | MS.gene59217:CDS | 40.0% | |
| AAGGAGAAACGAATGTGGTA+GGG | - | chr1.3:67952653-67952672 | None:intergenic | 40.0% | |
| AAGTCTTAAGGGTCCACTTT+GGG | + | chr1.3:67951495-67951514 | MS.gene59217:CDS | 40.0% | |
| ACAAGTGCTTGCAAAACAAG+AGG | + | chr1.3:67952839-67952858 | MS.gene59217:CDS | 40.0% | |
| ACCTCCAACTACATTTGAAG+AGG | + | chr1.3:67953589-67953608 | MS.gene59217:CDS | 40.0% | |
| ATATAGAGGGATCAAGGAAG+TGG | - | chr1.3:67952333-67952352 | None:intergenic | 40.0% | |
| CATGAAGTCAAATGAGACGA+TGG | + | chr1.3:67953532-67953551 | MS.gene59217:CDS | 40.0% | |
| CCTCCAACTACATTTGAAGA+GGG | + | chr1.3:67953590-67953609 | MS.gene59217:CDS | 40.0% | |
| GAAGAGAAAGGAAGAGAGAT+TGG | + | chr1.3:67951349-67951368 | MS.gene59217:CDS | 40.0% | |
| GATAGCATGGAAGAAGATGA+AGG | + | chr1.3:67953713-67953732 | MS.gene59217:CDS | 40.0% | |
| GCTGAAATATCTTCCCACAA+TGG | - | chr1.3:67953305-67953324 | None:intergenic | 40.0% | |
| TAGTTCCACTGACAGGAAAT+AGG | - | chr1.3:67951700-67951719 | None:intergenic | 40.0% | |
| TCAAGAGAGCCAATGTTTCT+TGG | - | chr1.3:67951438-67951457 | None:intergenic | 40.0% | |
| TGTAGGAAACTAGCTGAACT+TGG | + | chr1.3:67952360-67952379 | MS.gene59217:intron | 40.0% | |
| ! | ATCAATATTAACGGTGGTGG+AGG | + | chr1.3:67951397-67951416 | MS.gene59217:CDS | 40.0% |
| ! | GGCCCATTTTCTTGATACTT+TGG | - | chr1.3:67953275-67953294 | None:intergenic | 40.0% |
| ! | TAGAAGCTCAAAGAAGTGCA+AGG | + | chr1.3:67952389-67952408 | MS.gene59217:CDS | 40.0% |
| ! | TGGTGATGCAACAGTAATGA+TGG | + | chr1.3:67951270-67951289 | MS.gene59217:CDS | 40.0% |
| ! | TTGTTGTTAGGTTGTGGTGA+AGG | - | chr1.3:67952672-67952691 | None:intergenic | 40.0% |
| ! | TTTTCCACTCCTACCTTCTT+TGG | - | chr1.3:67952451-67952470 | None:intergenic | 40.0% |
| !! | GGTTACAAAAGTGGTAATGG+TGG | + | chr1.3:67953176-67953195 | MS.gene59217:CDS | 40.0% |
| !! | TGAGAATATTGTGCCGGTTA+CGG | + | chr1.3:67951306-67951325 | MS.gene59217:CDS | 40.0% |
| !! | TTTTGACTAGTTCCACTGAC+AGG | - | chr1.3:67951707-67951726 | None:intergenic | 40.0% |
| !!! | TTGTGGTTTTGGATGGTAAG+AGG | - | chr1.3:67952538-67952557 | None:intergenic | 40.0% |
| AACCGGCACAATATTCTCAC+CGG | - | chr1.3:67951305-67951324 | None:intergenic | 45.0% | |
| AACGAATGTGGTAGGGTTTG+TGG | - | chr1.3:67952646-67952665 | None:intergenic | 45.0% | |
| AATGTGGTAGGGTTTGTGGA+TGG | - | chr1.3:67952642-67952661 | None:intergenic | 45.0% | |
| AGAACCAAAGAAGGTAGGAG+TGG | + | chr1.3:67952444-67952463 | MS.gene59217:CDS | 45.0% | |
| AGAGAGCCAATGTTTCTTGG+CGG | - | chr1.3:67951435-67951454 | None:intergenic | 45.0% | |
| AGCATGGAAGAAGATGAAGG+AGG | + | chr1.3:67953716-67953735 | MS.gene59217:CDS | 45.0% | |
| CAAGTCTTAAGGGTCCACTT+TGG | + | chr1.3:67951494-67951513 | MS.gene59217:CDS | 45.0% | |
| CCCTCTTCAAATGTAGTTGG+AGG | - | chr1.3:67953593-67953612 | None:intergenic | 45.0% | |
| CTTGAAACCTCTTCCCAAAG+TGG | - | chr1.3:67951511-67951530 | None:intergenic | 45.0% | |
| GAAGGAGAAACGAATGTGGT+AGG | - | chr1.3:67952654-67952673 | None:intergenic | 45.0% | |
| GAGAAAGGAAGAGAGATTGG+TGG | + | chr1.3:67951352-67951371 | MS.gene59217:CDS | 45.0% | |
| GAGCTGCTGATGATCTTTCT+TGG | - | chr1.3:67952983-67953002 | None:intergenic | 45.0% | |
| GCACCCTCTTCAAATGTAGT+TGG | - | chr1.3:67953596-67953615 | None:intergenic | 45.0% | |
| GGTAGGAGTGGAAAATCAGA+AGG | + | chr1.3:67952456-67952475 | MS.gene59217:CDS | 45.0% | |
| TCAGCTGCAATGAAGAGACA+AGG | + | chr1.3:67953320-67953339 | MS.gene59217:CDS | 45.0% | |
| TGGAACCTATTTCCTGTCAG+TGG | + | chr1.3:67951692-67951711 | MS.gene59217:intron | 45.0% | |
| TGGTGAAGGAGAAACGAATG+TGG | - | chr1.3:67952658-67952677 | None:intergenic | 45.0% | |
| ! | CACTTTGGGAAGAGGTTTCA+AGG | + | chr1.3:67951509-67951528 | MS.gene59217:CDS | 45.0% |
| ! | GTAATGATGGAGACTTGCTC+CGG | + | chr1.3:67951283-67951302 | MS.gene59217:CDS | 45.0% |
| ! | GTGGCTGTCCAGACAATTTT+TGG | - | chr1.3:67953034-67953053 | None:intergenic | 45.0% |
| ! | TCTTCCCACAATGGTGCTTT+TGG | - | chr1.3:67953296-67953315 | None:intergenic | 45.0% |
| !! | TACATTTGAAGAGGGTGCTG+TGG | + | chr1.3:67953598-67953617 | MS.gene59217:CDS | 45.0% |
| !! | TTAACGGTGGTGGAGGAAAT+AGG | + | chr1.3:67951404-67951423 | MS.gene59217:CDS | 45.0% |
| !!! | TCACTTTTTGGCCACCTTGA+TGG | - | chr1.3:67953215-67953234 | None:intergenic | 45.0% |
| AAGTGGAGGAGACAGAAAGG+AGG | - | chr1.3:67952316-67952335 | None:intergenic | 50.0% | |
| AGAGCCAATGTTTCTTGGCG+GGG | - | chr1.3:67951433-67951452 | None:intergenic | 50.0% | |
| AGGAAGTGGAGGAGACAGAA+AGG | - | chr1.3:67952319-67952338 | None:intergenic | 50.0% | |
| AGGGTTTGTGGATGGAACAG+TGG | - | chr1.3:67952634-67952653 | None:intergenic | 50.0% | |
| CTCCGGTGAGAATATTGTGC+CGG | + | chr1.3:67951300-67951319 | MS.gene59217:CDS | 50.0% | |
| CTTCTCCTTCTCCATCAAGG+TGG | + | chr1.3:67953201-67953220 | MS.gene59217:CDS | 50.0% | |
| GAGAGCCAATGTTTCTTGGC+GGG | - | chr1.3:67951434-67951453 | None:intergenic | 50.0% | |
| GTGCTTCTCCTTCTCCATCA+AGG | + | chr1.3:67953198-67953217 | MS.gene59217:CDS | 50.0% | |
| TAGAGGGATCAAGGAAGTGG+AGG | - | chr1.3:67952330-67952349 | None:intergenic | 50.0% | |
| TGAGACGATGGAGCCATTGA+TGG | + | chr1.3:67953544-67953563 | MS.gene59217:CDS | 50.0% | |
| TGGTGCAGCCAGAACAACAA+TGG | + | chr1.3:67953564-67953583 | MS.gene59217:CDS | 50.0% | |
| TTTGGCCACCTTGATGGAGA+AGG | - | chr1.3:67953209-67953228 | None:intergenic | 50.0% | |
| ! | GGAGGTCTCCATTGTTGTTC+TGG | - | chr1.3:67953575-67953594 | None:intergenic | 50.0% |
| ! | TAAGGGTCCACTTTGGGAAG+AGG | + | chr1.3:67951501-67951520 | MS.gene59217:CDS | 50.0% |
| ! | TGTTCTGGCTGCACCATCAA+TGG | - | chr1.3:67953560-67953579 | None:intergenic | 50.0% |
| !! | AGGAAGAGAGATTGGTGGTG+AGG | + | chr1.3:67951357-67951376 | MS.gene59217:CDS | 50.0% |
| !! | ATGGGCCAAAAGCACCATTG+TGG | + | chr1.3:67953288-67953307 | MS.gene59217:CDS | 50.0% |
| !! | TGGGCCAAAAGCACCATTGT+GGG | + | chr1.3:67953289-67953308 | MS.gene59217:CDS | 50.0% |
| CAAGTCTTCGTCCGAAGCTG+TGG | - | chr1.3:67952763-67952782 | None:intergenic | 55.0% | |
| CACAGCTTCGGACGAAGACT+TGG | + | chr1.3:67952761-67952780 | MS.gene59217:CDS | 55.0% | |
| GATGCCAGAGCTGTCTGACA+CGG | - | chr1.3:67953089-67953108 | None:intergenic | 55.0% | |
| !! | ACGGTGGTGGAGGAAATAGG+TGG | + | chr1.3:67951407-67951426 | MS.gene59217:CDS | 55.0% |
| GTCTCCGTGTCAGACAGCTC+TGG | + | chr1.3:67953082-67953101 | MS.gene59217:CDS | 60.0% | |
| GTCTGACACGGAGACAGCTC+TGG | - | chr1.3:67953077-67953096 | None:intergenic | 60.0% | |
| GTGGCCCCGCCAAGAAACAT+TGG | + | chr1.3:67951426-67951445 | MS.gene59217:CDS | 60.0% | |
| GTTACGGCGCAAAACGGAGG+CGG | + | chr1.3:67951322-67951341 | MS.gene59217:CDS | 60.0% | |
| ! | CCTCCGTTTTGCGCCGTAAC+CGG | - | chr1.3:67951322-67951341 | None:intergenic | 60.0% |
| !! | GTGCCGGTTACGGCGCAAAA+CGG | + | chr1.3:67951316-67951335 | MS.gene59217:CDS | 60.0% |
| CCGGTTACGGCGCAAAACGG+AGG | + | chr1.3:67951319-67951338 | MS.gene59217:CDS | 65.0% | |
| GGAGGCGGCGGTGAAGAGAA+AGG | + | chr1.3:67951337-67951356 | MS.gene59217:CDS | 65.0% | |
| ! | CACGGAGACAGCTCTGGTGC+TGG | - | chr1.3:67953071-67953090 | None:intergenic | 65.0% |
| ! | GGAGACAGCTCTGGTGCTGG+CGG | - | chr1.3:67953068-67953087 | None:intergenic | 65.0% |
| !! | TCTGGTGCTGGCGGTGGTTG+TGG | - | chr1.3:67953059-67953078 | None:intergenic | 65.0% |
| ACGGCGCAAAACGGAGGCGG+CGG | + | chr1.3:67951325-67951344 | MS.gene59217:CDS | 70.0% | |
| GCTGGCGGTGGTTGTGGTGG+TGG | - | chr1.3:67953053-67953072 | None:intergenic | 70.0% | |
| !! | GACAGCTCTGGTGCTGGCGG+TGG | - | chr1.3:67953065-67953084 | None:intergenic | 70.0% |
| !! | GGTGCTGGCGGTGGTTGTGG+TGG | - | chr1.3:67953056-67953075 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 67951262 | 67953802 | 67951262 | ID=MS.gene59217 |
| chr1.3 | mRNA | 67951262 | 67953802 | 67951262 | ID=MS.gene59217.t1;Parent=MS.gene59217 |
| chr1.3 | exon | 67951262 | 67951530 | 67951262 | ID=MS.gene59217.t1.exon1;Parent=MS.gene59217.t1 |
| chr1.3 | CDS | 67951262 | 67951530 | 67951262 | ID=cds.MS.gene59217.t1;Parent=MS.gene59217.t1 |
| chr1.3 | exon | 67952365 | 67953802 | 67952365 | ID=MS.gene59217.t1.exon2;Parent=MS.gene59217.t1 |
| chr1.3 | CDS | 67952365 | 67953802 | 67952365 | ID=cds.MS.gene59217.t1;Parent=MS.gene59217.t1 |
| Gene Sequence |
| Protein sequence |
