Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59246.t1 | XP_024630878.1 | 81.9 | 742 | 125 | 4 | 1 | 741 | 1 | 734 | 0.00E+00 | 1229.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59246.t1 | Q9SY66 | 43.9 | 578 | 312 | 6 | 66 | 635 | 29 | 602 | 8.8e-139 | 495.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59246.t1 | A0A0B2RR75 | 80.1 | 747 | 125 | 7 | 9 | 741 | 19 | 755 | 0.0e+00 | 1193.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59246.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59246.t1 | MTR_4g035820 | 71.392 | 388 | 76 | 8 | 1 | 376 | 1 | 365 | 0.0 | 533 |
| MS.gene59246.t1 | MTR_4g035820 | 65.126 | 238 | 28 | 4 | 463 | 700 | 325 | 507 | 7.63e-88 | 290 |
| MS.gene59246.t1 | MTR_8g447350 | 74.342 | 152 | 18 | 2 | 524 | 675 | 1 | 131 | 4.99e-68 | 222 |
| MS.gene59246.t1 | MTR_2g035140 | 60.119 | 168 | 53 | 4 | 554 | 717 | 104 | 261 | 2.12e-54 | 189 |
| MS.gene59246.t1 | MTR_2g035140 | 56.481 | 108 | 32 | 2 | 212 | 319 | 12 | 104 | 2.45e-26 | 109 |
| MS.gene59246.t1 | MTR_3g450850 | 36.879 | 282 | 163 | 6 | 46 | 316 | 9 | 286 | 2.39e-49 | 177 |
| MS.gene59246.t1 | MTR_6g051425 | 29.537 | 281 | 180 | 6 | 84 | 355 | 18 | 289 | 5.33e-37 | 142 |
| MS.gene59246.t1 | MTR_6g014355 | 45.752 | 153 | 83 | 0 | 147 | 299 | 5 | 157 | 4.22e-34 | 131 |
| MS.gene59246.t1 | MTR_6g014355 | 46.610 | 118 | 57 | 2 | 505 | 622 | 134 | 245 | 4.34e-27 | 110 |
| MS.gene59246.t1 | MTR_1g070355 | 29.787 | 235 | 157 | 5 | 89 | 321 | 80 | 308 | 1.35e-24 | 109 |
| MS.gene59246.t1 | MTR_3g012160 | 45.161 | 93 | 51 | 0 | 225 | 317 | 1 | 93 | 2.29e-22 | 92.4 |
| MS.gene59246.t1 | MTR_5g076070 | 25.424 | 236 | 162 | 6 | 86 | 316 | 56 | 282 | 8.89e-16 | 79.0 |
| MS.gene59246.t1 | MTR_0558s0020 | 23.684 | 266 | 168 | 7 | 88 | 328 | 41 | 296 | 2.52e-14 | 74.7 |
| MS.gene59246.t1 | MTR_7g446520 | 27.711 | 249 | 146 | 10 | 89 | 330 | 94 | 315 | 2.45e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59246.t1 | AT1G10240 | 43.167 | 600 | 327 | 7 | 44 | 635 | 9 | 602 | 8.69e-176 | 520 |
| MS.gene59246.t1 | AT1G10240 | 43.167 | 600 | 327 | 7 | 44 | 635 | 9 | 602 | 8.69e-176 | 520 |
| MS.gene59246.t1 | AT5G28530 | 35.382 | 602 | 351 | 11 | 54 | 635 | 29 | 612 | 1.47e-120 | 377 |
| MS.gene59246.t1 | AT5G28530 | 35.382 | 602 | 351 | 11 | 54 | 635 | 29 | 612 | 1.47e-120 | 377 |
| MS.gene59246.t1 | AT5G28530 | 35.314 | 606 | 350 | 12 | 54 | 635 | 29 | 616 | 4.81e-119 | 373 |
| MS.gene59246.t1 | AT5G28530 | 31.472 | 591 | 326 | 12 | 54 | 635 | 29 | 549 | 1.99e-91 | 298 |
| MS.gene59246.t1 | AT4G38180 | 32.428 | 589 | 370 | 12 | 83 | 653 | 73 | 651 | 5.39e-90 | 299 |
| MS.gene59246.t1 | AT5G28530 | 31.429 | 595 | 325 | 13 | 54 | 635 | 29 | 553 | 7.37e-90 | 295 |
| MS.gene59246.t1 | AT4G15090 | 29.577 | 639 | 405 | 19 | 15 | 639 | 1 | 608 | 8.04e-73 | 253 |
| MS.gene59246.t1 | AT4G15090 | 29.577 | 639 | 405 | 19 | 15 | 639 | 1 | 608 | 8.04e-73 | 253 |
| MS.gene59246.t1 | AT4G15090 | 29.577 | 639 | 405 | 19 | 15 | 639 | 1 | 608 | 8.04e-73 | 253 |
| MS.gene59246.t1 | AT4G15090 | 29.577 | 639 | 405 | 19 | 15 | 639 | 1 | 608 | 8.04e-73 | 253 |
| MS.gene59246.t1 | AT4G15090 | 29.577 | 639 | 405 | 19 | 15 | 639 | 1 | 608 | 8.04e-73 | 253 |
| MS.gene59246.t1 | AT2G27110 | 30.201 | 596 | 354 | 16 | 60 | 639 | 29 | 578 | 9.07e-71 | 248 |
| MS.gene59246.t1 | AT2G27110 | 30.201 | 596 | 354 | 16 | 60 | 639 | 29 | 578 | 9.07e-71 | 248 |
| MS.gene59246.t1 | AT3G22170 | 29.160 | 583 | 358 | 14 | 80 | 639 | 67 | 617 | 4.42e-69 | 243 |
| MS.gene59246.t1 | AT3G22170 | 29.160 | 583 | 358 | 14 | 80 | 639 | 67 | 617 | 4.42e-69 | 243 |
| MS.gene59246.t1 | AT1G76320 | 28.596 | 577 | 342 | 15 | 89 | 635 | 3 | 539 | 7.53e-66 | 231 |
| MS.gene59246.t1 | AT1G76320 | 28.596 | 577 | 342 | 15 | 89 | 635 | 3 | 539 | 1.04e-65 | 232 |
| MS.gene59246.t1 | AT1G76320 | 28.596 | 577 | 342 | 15 | 89 | 635 | 3 | 539 | 1.04e-65 | 232 |
| MS.gene59246.t1 | AT1G76320 | 28.596 | 577 | 342 | 15 | 89 | 635 | 3 | 539 | 1.18e-65 | 232 |
| MS.gene59246.t1 | AT3G06250 | 29.698 | 596 | 347 | 17 | 71 | 651 | 178 | 716 | 2.42e-64 | 229 |
| MS.gene59246.t1 | AT3G06250 | 29.698 | 596 | 347 | 17 | 71 | 651 | 178 | 716 | 2.42e-64 | 229 |
| MS.gene59246.t1 | AT3G06250 | 29.698 | 596 | 347 | 17 | 71 | 651 | 178 | 716 | 2.42e-64 | 229 |
| MS.gene59246.t1 | AT4G38170 | 32.895 | 380 | 244 | 7 | 293 | 663 | 45 | 422 | 1.14e-61 | 216 |
| MS.gene59246.t1 | AT2G27110 | 30.365 | 438 | 269 | 10 | 218 | 639 | 16 | 433 | 1.40e-57 | 209 |
| MS.gene59246.t1 | AT4G19990 | 29.725 | 582 | 334 | 14 | 86 | 639 | 24 | 558 | 1.72e-57 | 209 |
| MS.gene59246.t1 | AT4G19990 | 29.725 | 582 | 334 | 14 | 86 | 639 | 24 | 558 | 1.72e-57 | 209 |
| MS.gene59246.t1 | AT4G19990 | 29.897 | 582 | 333 | 14 | 86 | 639 | 38 | 572 | 1.99e-57 | 209 |
| MS.gene59246.t1 | AT4G19990 | 29.897 | 582 | 333 | 14 | 86 | 639 | 24 | 558 | 1.99e-57 | 209 |
| MS.gene59246.t1 | AT5G18960 | 29.038 | 582 | 335 | 19 | 79 | 641 | 207 | 729 | 2.16e-57 | 209 |
| MS.gene59246.t1 | AT5G18960 | 29.038 | 582 | 335 | 19 | 79 | 641 | 207 | 729 | 2.16e-57 | 209 |
| MS.gene59246.t1 | AT4G19990 | 29.897 | 582 | 333 | 14 | 86 | 639 | 24 | 558 | 2.82e-57 | 209 |
| MS.gene59246.t1 | AT4G19990 | 29.897 | 582 | 333 | 14 | 86 | 639 | 24 | 558 | 2.82e-57 | 209 |
| MS.gene59246.t1 | AT1G52520 | 26.227 | 591 | 358 | 16 | 82 | 635 | 84 | 633 | 5.47e-52 | 192 |
| MS.gene59246.t1 | AT2G32250 | 26.399 | 572 | 361 | 13 | 75 | 635 | 26 | 548 | 5.83e-52 | 193 |
| MS.gene59246.t1 | AT2G32250 | 26.481 | 574 | 358 | 14 | 75 | 635 | 26 | 548 | 8.63e-52 | 193 |
| MS.gene59246.t1 | AT2G32250 | 26.481 | 574 | 358 | 14 | 75 | 635 | 26 | 548 | 8.63e-52 | 193 |
| MS.gene59246.t1 | AT2G32250 | 26.399 | 572 | 361 | 13 | 75 | 635 | 26 | 548 | 9.56e-52 | 193 |
| MS.gene59246.t1 | AT2G32250 | 26.399 | 572 | 361 | 13 | 75 | 635 | 26 | 548 | 9.56e-52 | 193 |
| MS.gene59246.t1 | AT2G32250 | 26.399 | 572 | 361 | 13 | 75 | 635 | 26 | 548 | 9.56e-52 | 193 |
| MS.gene59246.t1 | AT2G32250 | 26.354 | 554 | 352 | 12 | 89 | 635 | 3 | 507 | 6.58e-51 | 190 |
| MS.gene59246.t1 | AT2G32250 | 26.354 | 554 | 352 | 12 | 89 | 635 | 3 | 507 | 7.89e-51 | 190 |
| MS.gene59246.t1 | AT4G19990 | 29.008 | 524 | 308 | 12 | 133 | 639 | 25 | 501 | 4.53e-50 | 187 |
| MS.gene59246.t1 | AT1G80010 | 25.843 | 623 | 380 | 23 | 62 | 635 | 67 | 656 | 7.60e-50 | 187 |
Find 94 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGTGTTCCCTTTAT+TGG | 0.123228 | 6.4:-45184035 | MS.gene59246:CDS |
| CGAATGTCCCTTTCAATAAA+TGG | 0.156974 | 6.4:+45183552 | None:intergenic |
| TATCTTCGTGATTATTTCTT+TGG | 0.163692 | 6.4:-45182745 | MS.gene59246:CDS |
| CGACCTTTAGGTTTGGATTT+TGG | 0.167927 | 6.4:+45181841 | None:intergenic |
| GAAGATATTGCTTTAGAAAA+TGG | 0.185026 | 6.4:-45184203 | MS.gene59246:CDS |
| CCTAAACGACGGCGACTTAA+AGG | 0.199216 | 6.4:-45181817 | MS.gene59246:CDS |
| GTTGTAAGCTCTTTGAATTT+TGG | 0.244484 | 6.4:-45182065 | MS.gene59246:CDS |
| TAACTTTCAAGTTTAGTTCT+TGG | 0.260182 | 6.4:-45182948 | MS.gene59246:CDS |
| TGCATATTTGTCTCGAAGTA+TGG | 0.261168 | 6.4:+45182918 | None:intergenic |
| CCTTTAAGTCGCCGTCGTTT+AGG | 0.263372 | 6.4:+45181817 | None:intergenic |
| GCAGAAAACATGCAGTGTTT+TGG | 0.283471 | 6.4:-45182110 | MS.gene59246:CDS |
| TATTCAATTGATCATGAAAA+TGG | 0.285695 | 6.4:-45182171 | MS.gene59246:CDS |
| TAAATGTGTACCTAAACTTT+TGG | 0.293742 | 6.4:+45181649 | None:intergenic |
| TGATCGGTTAATATAGTCTT+TGG | 0.308153 | 6.4:+45183042 | None:intergenic |
| CGTCGTTTAGGACGACCTTT+AGG | 0.309582 | 6.4:+45181829 | None:intergenic |
| AATTCTTCTTCCAAAAGTTT+AGG | 0.313803 | 6.4:-45181659 | None:intergenic |
| AAATGGTTGTTCAGAAATAA+TGG | 0.340072 | 6.4:-45184186 | MS.gene59246:CDS |
| TTCGAGACAAATATGCAAAA+TGG | 0.344814 | 6.4:-45182912 | MS.gene59246:CDS |
| AATTCTTATGAAATGCCATT+TGG | 0.359641 | 6.4:-45183309 | MS.gene59246:CDS |
| TGATGGTTCCATGAATTTCA+TGG | 0.362135 | 6.4:+45183863 | None:intergenic |
| TATTAACCGATCAAGATCTA+TGG | 0.362391 | 6.4:-45183032 | MS.gene59246:CDS |
| TTTAACCGACTTTGTAAAAC+AGG | 0.371626 | 6.4:-45182650 | MS.gene59246:intron |
| CGTGATGGCAAGTAGTTAGA+AGG | 0.372743 | 6.4:+45181985 | None:intergenic |
| ATTTGAGAGAAGTGATGTTA+TGG | 0.378695 | 6.4:-45183502 | MS.gene59246:CDS |
| TTTGTGGGTATGAATAATCA+TGG | 0.408971 | 6.4:-45183282 | MS.gene59246:CDS |
| GTATGAAATCAGAAACTATT+GGG | 0.418531 | 6.4:-45182776 | MS.gene59246:CDS |
| GTAGATTCACAAACAAGAAT+GGG | 0.422387 | 6.4:-45183932 | MS.gene59246:CDS |
| TGTATGAAATCAGAAACTAT+TGG | 0.424688 | 6.4:-45182777 | MS.gene59246:CDS |
| TTTAGGACGACCTTTAGGTT+TGG | 0.425449 | 6.4:+45181834 | None:intergenic |
| CTTCGTGATTATTTCTTTGG+TGG | 0.427885 | 6.4:-45182742 | MS.gene59246:CDS |
| TTGTATTTAGCAACAACATT+TGG | 0.430421 | 6.4:+45182829 | None:intergenic |
| TTTGCCTTCTTTCCCTTTAG+CGG | 0.431590 | 6.4:+45181721 | None:intergenic |
| TAGAGCCTCCATGAAATTCA+TGG | 0.438357 | 6.4:-45183871 | MS.gene59246:CDS |
| CAAAACACAGTTTCTGCATA+TGG | 0.439042 | 6.4:-45182975 | MS.gene59246:CDS |
| CATTGTCACATGTCCGCTAA+AGG | 0.446736 | 6.4:-45181734 | MS.gene59246:CDS |
| TGCATTTCGTTGGCTAATGA+AGG | 0.448769 | 6.4:-45183211 | MS.gene59246:intron |
| TTCGTGATTATTTCTTTGGT+GGG | 0.450960 | 6.4:-45182741 | MS.gene59246:CDS |
| CGGTATTATAAAGAGGTTAA+CGG | 0.457669 | 6.4:-45182132 | MS.gene59246:CDS |
| ATTAATACTCTCCGATCTTC+CGG | 0.458636 | 6.4:+45182708 | None:intergenic |
| GGTAGATTCACAAACAAGAA+TGG | 0.461401 | 6.4:-45183933 | MS.gene59246:CDS |
| ATTGTCACATGTCCGCTAAA+GGG | 0.468125 | 6.4:-45181733 | MS.gene59246:CDS |
| AATGAAGAAGGTGATAAAGA+TGG | 0.470337 | 6.4:-45184071 | MS.gene59246:CDS |
| TAACCTTCCATTTATTGAAA+GGG | 0.475583 | 6.4:-45183559 | MS.gene59246:CDS |
| GTGAAGAATTTGAGCATCAA+TGG | 0.478402 | 6.4:-45182852 | MS.gene59246:CDS |
| ATGGTAATGTGTTTGTGCTT+CGG | 0.482748 | 6.4:-45182152 | MS.gene59246:CDS |
| AATATTGTAACAAATGAAGA+AGG | 0.487226 | 6.4:-45184083 | MS.gene59246:CDS |
| GTAACCTTCCATTTATTGAA+AGG | 0.500947 | 6.4:-45183560 | MS.gene59246:CDS |
| TTTAGTGAAGGACTTGTTAG+TGG | 0.507871 | 6.4:-45184153 | MS.gene59246:CDS |
| TCGGTTAATATAGTCTTTGG+TGG | 0.508332 | 6.4:+45183045 | None:intergenic |
| GAAGGTGATAAAGATGGGTC+TGG | 0.517282 | 6.4:-45184065 | MS.gene59246:CDS |
| GTTGTAACTCGCCACTCAGT+TGG | 0.517634 | 6.4:+45183756 | None:intergenic |
| ATGTCCGCTAAAGGGAAAGA+AGG | 0.522488 | 6.4:-45181725 | MS.gene59246:CDS |
| TGTGCTTCGGTATTATAAAG+AGG | 0.524446 | 6.4:-45182139 | MS.gene59246:CDS |
| AGAGCAGAGAAATAGAGAAT+CGG | 0.530469 | 6.4:-45183838 | MS.gene59246:CDS |
| TTTCATCCATAGATCTTGAT+CGG | 0.532424 | 6.4:+45183026 | None:intergenic |
| TTGTTAGTGGTTGATAACAT+AGG | 0.538715 | 6.4:-45184140 | MS.gene59246:CDS |
| CCTCCAAAATCCAAACCTAA+AGG | 0.542127 | 6.4:-45181844 | MS.gene59246:CDS |
| ACAAGAATGGGGTTATGAGC+AGG | 0.542872 | 6.4:-45183920 | MS.gene59246:CDS |
| ATGAAGAAGGTGATAAAGAT+GGG | 0.545139 | 6.4:-45184070 | MS.gene59246:CDS |
| GATGACAACCACCGGAAGAT+CGG | 0.546284 | 6.4:-45182719 | MS.gene59246:CDS |
| TGTATTTGATACTACATACA+AGG | 0.548490 | 6.4:-45183334 | MS.gene59246:CDS |
| AGTTTCAAGAGGAGTTTGAA+AGG | 0.562176 | 6.4:-45182203 | MS.gene59246:CDS |
| TCAGAGATAGTTCGATAAGC+CGG | 0.569841 | 6.4:+45183678 | None:intergenic |
| TCACATAACATGAACACTTG+TGG | 0.569949 | 6.4:-45181781 | MS.gene59246:CDS |
| ACTTGATGAGGAAAGAAGGT+TGG | 0.572721 | 6.4:-45183418 | MS.gene59246:CDS |
| CTGATTGGTTTAGCAAACCA+TGG | 0.574779 | 6.4:+45183715 | None:intergenic |
| CTTCTAACTACTTGCCATCA+CGG | 0.575563 | 6.4:-45181984 | MS.gene59246:CDS |
| AAACTGTGTCTGCATTTCGT+TGG | 0.575793 | 6.4:-45183221 | MS.gene59246:CDS |
| TGTCCCTTTCAATAAATGGA+AGG | 0.578784 | 6.4:+45183556 | None:intergenic |
| ATACACTTGATGAGGAAAGA+AGG | 0.579288 | 6.4:-45183422 | MS.gene59246:CDS |
| TTTGGTGGGATGACAACCAC+CGG | 0.581206 | 6.4:-45182727 | MS.gene59246:CDS |
| CAGTCAAATAAACATGTGAA+AGG | 0.584197 | 6.4:-45182802 | MS.gene59246:CDS |
| AAGAGATATGCTTATCAACA+AGG | 0.596535 | 6.4:-45183972 | MS.gene59246:CDS |
| AAACGACGGCGACTTAAAGG+TGG | 0.596721 | 6.4:-45181814 | MS.gene59246:CDS |
| TTTGTTGTTGAACATAACCA+TGG | 0.597979 | 6.4:-45183732 | MS.gene59246:CDS |
| ATGATCAATTGAATATTGAG+CGG | 0.600490 | 6.4:+45182179 | None:intergenic |
| AATACTCTCCGATCTTCCGG+TGG | 0.600856 | 6.4:+45182711 | None:intergenic |
| GGTTGAGCATGATTTAGTGA+AGG | 0.607141 | 6.4:-45184165 | MS.gene59246:CDS |
| CTATGAGCTTGCTCTTGTAG+AGG | 0.612240 | 6.4:+45182252 | None:intergenic |
| ATATGCATATACACTTGATG+AGG | 0.621673 | 6.4:-45183430 | MS.gene59246:CDS |
| GTGATGGCAAGTAGTTAGAA+GGG | 0.633198 | 6.4:+45181986 | None:intergenic |
| TGTGGATTATGCAAAGGTGA+AGG | 0.636366 | 6.4:-45181763 | MS.gene59246:CDS |
| GGATCTTCTGAAGTATTGCG+AGG | 0.640419 | 6.4:-45183481 | MS.gene59246:CDS |
| AGAGATATGCTTATCAACAA+GGG | 0.641950 | 6.4:-45183971 | MS.gene59246:CDS |
| ATGATATATTTCCAACTGAG+TGG | 0.655744 | 6.4:-45183767 | MS.gene59246:CDS |
| GCTTGAAGCAACCACCGTGA+TGG | 0.657308 | 6.4:+45181970 | None:intergenic |
| ATAATGTTAGAGAAGTGCAA+AGG | 0.660770 | 6.4:-45182297 | MS.gene59246:CDS |
| TGGTTTGCTAAACCAATCAG+AGG | 0.671864 | 6.4:-45183712 | MS.gene59246:CDS |
| TAGATTCACAAACAAGAATG+GGG | 0.673558 | 6.4:-45183931 | MS.gene59246:CDS |
| AACACTTGTGGATTATGCAA+AGG | 0.684041 | 6.4:-45181769 | MS.gene59246:CDS |
| CTAAAGGTCGTCCTAAACGA+CGG | 0.691619 | 6.4:-45181828 | MS.gene59246:CDS |
| TGGTTCCATGAATTTCATGG+AGG | 0.699375 | 6.4:+45183866 | None:intergenic |
| TGGAGGCTCTACCTTCACGA+TGG | 0.706267 | 6.4:+45183883 | None:intergenic |
| CTAACTACTTGCCATCACGG+TGG | 0.742949 | 6.4:-45181981 | MS.gene59246:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATAATTTTGTTTCA+TGG | + | chr6.4:45183482-45183501 | None:intergenic | 10.0% |
| !!! | ATTTTTTTATTAAAAAAAGG+TGG | - | chr6.4:45182290-45182309 | MS.gene59246:CDS | 10.0% |
| !!! | CGTATTTTTTTATTAAAAAA+AGG | - | chr6.4:45182287-45182306 | MS.gene59246:CDS | 10.0% |
| !!! | TTAAAATAATTTTGTTTCAT+GGG | + | chr6.4:45183481-45183500 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAAAAGTTAATC+CGG | - | chr6.4:45183502-45183521 | MS.gene59246:CDS | 10.0% |
| !!! | ATCAAAACTTATTTTATTGT+TGG | + | chr6.4:45181688-45181707 | None:intergenic | 15.0% |
| !! | AACGCATATGTATATAAAAA+AGG | + | chr6.4:45182796-45182815 | None:intergenic | 20.0% |
| !! | AAGAAAAATTTGACCAATAA+AGG | + | chr6.4:45181910-45181929 | None:intergenic | 20.0% |
| !! | AATATTGTAACAAATGAAGA+AGG | - | chr6.4:45181846-45181865 | MS.gene59246:CDS | 20.0% |
| !! | AGAAAAATTTGACCAATAAA+GGG | + | chr6.4:45181909-45181928 | None:intergenic | 20.0% |
| !! | TATTCAATTGATCATGAAAA+TGG | - | chr6.4:45183758-45183777 | MS.gene59246:CDS | 20.0% |
| !! | TTAATAAAAAAATACGCTCA+CGG | + | chr6.4:45182283-45182302 | None:intergenic | 20.0% |
| !!! | ATTTCTGTAGACAATTTTTT+CGG | - | chr6.4:45183445-45183464 | MS.gene59246:CDS | 20.0% |
| !!! | TTTTTATGAGTTGTATAAGT+TGG | - | chr6.4:45183048-45183067 | MS.gene59246:CDS | 20.0% |
| ! | AAATGGTTGTTCAGAAATAA+TGG | - | chr6.4:45181743-45181762 | MS.gene59246:CDS | 25.0% |
| ! | AATTCTTATGAAATGCCATT+TGG | - | chr6.4:45182620-45182639 | MS.gene59246:intron | 25.0% |
| ! | ATGATCAATTGAATATTGAG+CGG | + | chr6.4:45183753-45183772 | None:intergenic | 25.0% |
| ! | ATTAAAAAAAGGTGGTCTTT+CGG | - | chr6.4:45182298-45182317 | MS.gene59246:CDS | 25.0% |
| ! | GTATGAAATCAGAAACTATT+GGG | - | chr6.4:45183153-45183172 | MS.gene59246:intron | 25.0% |
| ! | TAACCTTCCATTTATTGAAA+GGG | - | chr6.4:45182370-45182389 | MS.gene59246:intron | 25.0% |
| ! | TGTATGAAATCAGAAACTAT+TGG | - | chr6.4:45183152-45183171 | MS.gene59246:intron | 25.0% |
| ! | TGTATTTGATACTACATACA+AGG | - | chr6.4:45182595-45182614 | MS.gene59246:intron | 25.0% |
| ! | TTGTATTTAGCAACAACATT+TGG | + | chr6.4:45183103-45183122 | None:intergenic | 25.0% |
| ! | TTTGATTGGTACCAAAAATA+TGG | - | chr6.4:45182563-45182582 | MS.gene59246:intron | 25.0% |
| !! | TATCTTCGTGATTATTTCTT+TGG | - | chr6.4:45183184-45183203 | MS.gene59246:intron | 25.0% |
| !! | TTCTTTTCAAAAGTTTCAAG+AGG | - | chr6.4:45183715-45183734 | MS.gene59246:CDS | 25.0% |
| !! | TTGTAAGCTCTTTGAATTTT+GGG | - | chr6.4:45183865-45183884 | MS.gene59246:CDS | 25.0% |
| !!! | GAAGATATTGCTTTAGAAAA+TGG | - | chr6.4:45181726-45181745 | MS.gene59246:CDS | 25.0% |
| !!! | TAAACTTTTGGAAGAAGAAT+TGG | + | chr6.4:45184271-45184290 | None:intergenic | 25.0% |
| !!! | TAACTTTCAAGTTTAGTTCT+TGG | - | chr6.4:45182981-45183000 | MS.gene59246:CDS | 25.0% |
| AAGAGATATGCTTATCAACA+AGG | - | chr6.4:45181957-45181976 | MS.gene59246:CDS | 30.0% | |
| AATGAAGAAGGTGATAAAGA+TGG | - | chr6.4:45181858-45181877 | MS.gene59246:CDS | 30.0% | |
| ACAAATTGTGTTCCCTTTAT+TGG | - | chr6.4:45181894-45181913 | MS.gene59246:CDS | 30.0% | |
| AGAGATATGCTTATCAACAA+GGG | - | chr6.4:45181958-45181977 | MS.gene59246:CDS | 30.0% | |
| ATACCCACAAAAATTCCAAA+TGG | + | chr6.4:45182638-45182657 | None:intergenic | 30.0% | |
| ATATGCATATACACTTGATG+AGG | - | chr6.4:45182499-45182518 | MS.gene59246:intron | 30.0% | |
| ATGAAGAAGGTGATAAAGAT+GGG | - | chr6.4:45181859-45181878 | MS.gene59246:CDS | 30.0% | |
| ATGATATATTTCCAACTGAG+TGG | - | chr6.4:45182162-45182181 | MS.gene59246:CDS | 30.0% | |
| ATTTGAGAGAAGTGATGTTA+TGG | - | chr6.4:45182427-45182446 | MS.gene59246:intron | 30.0% | |
| CAAGGGTTCTCAATAAAAAA+AGG | - | chr6.4:45181975-45181994 | MS.gene59246:CDS | 30.0% | |
| CAGTCAAATAAACATGTGAA+AGG | - | chr6.4:45183127-45183146 | MS.gene59246:intron | 30.0% | |
| CGGTATTATAAAGAGGTTAA+CGG | - | chr6.4:45183797-45183816 | MS.gene59246:CDS | 30.0% | |
| GTAACCTTCCATTTATTGAA+AGG | - | chr6.4:45182369-45182388 | MS.gene59246:intron | 30.0% | |
| GTAGATTCACAAACAAGAAT+GGG | - | chr6.4:45181997-45182016 | MS.gene59246:CDS | 30.0% | |
| TAGATTCACAAACAAGAATG+GGG | - | chr6.4:45181998-45182017 | MS.gene59246:CDS | 30.0% | |
| TAGTGTATTCTTGAAAATGC+TGG | + | chr6.4:45183418-45183437 | None:intergenic | 30.0% | |
| TATTAACCGATCAAGATCTA+TGG | - | chr6.4:45182897-45182916 | MS.gene59246:CDS | 30.0% | |
| TGATCGGTTAATATAGTCTT+TGG | + | chr6.4:45182890-45182909 | None:intergenic | 30.0% | |
| TTCGAGACAAATATGCAAAA+TGG | - | chr6.4:45183017-45183036 | MS.gene59246:CDS | 30.0% | |
| TTTCATCCATAGATCTTGAT+CGG | + | chr6.4:45182906-45182925 | None:intergenic | 30.0% | |
| TTTGTGGGTATGAATAATCA+TGG | - | chr6.4:45182647-45182666 | MS.gene59246:intron | 30.0% | |
| ! | ATAATGTTAGAGAAGTGCAA+AGG | - | chr6.4:45183632-45183651 | MS.gene59246:CDS | 30.0% |
| ! | GTTGTAAGCTCTTTGAATTT+TGG | - | chr6.4:45183864-45183883 | MS.gene59246:CDS | 30.0% |
| ! | TCATACCTGTTTTACAAAGT+CGG | + | chr6.4:45183287-45183306 | None:intergenic | 30.0% |
| ! | TGTAAGCTCTTTGAATTTTG+GGG | - | chr6.4:45183866-45183885 | MS.gene59246:CDS | 30.0% |
| ! | TTCGTGATTATTTCTTTGGT+GGG | - | chr6.4:45183188-45183207 | MS.gene59246:intron | 30.0% |
| ! | TTTAACCGACTTTGTAAAAC+AGG | - | chr6.4:45183279-45183298 | MS.gene59246:CDS | 30.0% |
| !! | AATGCCATTTGGAATTTTTG+TGG | - | chr6.4:45182631-45182650 | MS.gene59246:intron | 30.0% |
| !! | ATGCCATTTGGAATTTTTGT+GGG | - | chr6.4:45182632-45182651 | MS.gene59246:intron | 30.0% |
| !! | TTGTTAGTGGTTGATAACAT+AGG | - | chr6.4:45181789-45181808 | MS.gene59246:CDS | 30.0% |
| !! | TTTGTTGTTGAACATAACCA+TGG | - | chr6.4:45182197-45182216 | MS.gene59246:CDS | 30.0% |
| AGAGCAGAGAAATAGAGAAT+CGG | - | chr6.4:45182091-45182110 | MS.gene59246:CDS | 35.0% | |
| AGTTTCAAGAGGAGTTTGAA+AGG | - | chr6.4:45183726-45183745 | MS.gene59246:CDS | 35.0% | |
| ATACACTTGATGAGGAAAGA+AGG | - | chr6.4:45182507-45182526 | MS.gene59246:intron | 35.0% | |
| ATTAATACTCTCCGATCTTC+CGG | + | chr6.4:45183224-45183243 | None:intergenic | 35.0% | |
| CAAAACACAGTTTCTGCATA+TGG | - | chr6.4:45182954-45182973 | MS.gene59246:CDS | 35.0% | |
| CGAATGTCCCTTTCAATAAA+TGG | + | chr6.4:45182380-45182399 | None:intergenic | 35.0% | |
| CTAGAGAAAAATGTGAAGCA+TGG | - | chr6.4:45182347-45182366 | MS.gene59246:intron | 35.0% | |
| GGAGGAAGAAAATGAGAAAT+GGG | + | chr6.4:45183397-45183416 | None:intergenic | 35.0% | |
| GGTAGATTCACAAACAAGAA+TGG | - | chr6.4:45181996-45182015 | MS.gene59246:CDS | 35.0% | |
| GTCTACAGAAATAGTAACAC+CGG | + | chr6.4:45183524-45183543 | None:intergenic | 35.0% | |
| GTGAAGAATTTGAGCATCAA+TGG | - | chr6.4:45183077-45183096 | MS.gene59246:intron | 35.0% | |
| TCACATAACATGAACACTTG+TGG | - | chr6.4:45184148-45184167 | MS.gene59246:CDS | 35.0% | |
| TCGGTTAATATAGTCTTTGG+TGG | + | chr6.4:45182887-45182906 | None:intergenic | 35.0% | |
| TGATGGTTCCATGAATTTCA+TGG | + | chr6.4:45182069-45182088 | None:intergenic | 35.0% | |
| TGCATATTTGTCTCGAAGTA+TGG | + | chr6.4:45183014-45183033 | None:intergenic | 35.0% | |
| TGGAGGAAGAAAATGAGAAA+TGG | + | chr6.4:45183398-45183417 | None:intergenic | 35.0% | |
| TGTATTCTTGAAAATGCTGG+AGG | + | chr6.4:45183415-45183434 | None:intergenic | 35.0% | |
| TGTCCCTTTCAATAAATGGA+AGG | + | chr6.4:45182376-45182395 | None:intergenic | 35.0% | |
| TGTGCTTCGGTATTATAAAG+AGG | - | chr6.4:45183790-45183809 | MS.gene59246:CDS | 35.0% | |
| ! | AACACTTGTGGATTATGCAA+AGG | - | chr6.4:45184160-45184179 | MS.gene59246:CDS | 35.0% |
| ! | ATGGTAATGTGTTTGTGCTT+CGG | - | chr6.4:45183777-45183796 | MS.gene59246:CDS | 35.0% |
| ! | CAACAACATCGCCATATTTT+TGG | + | chr6.4:45182577-45182596 | None:intergenic | 35.0% |
| ! | CAGAAAACATGCAGTGTTTT+GGG | - | chr6.4:45183820-45183839 | MS.gene59246:CDS | 35.0% |
| ! | CTTCGTGATTATTTCTTTGG+TGG | - | chr6.4:45183187-45183206 | MS.gene59246:intron | 35.0% |
| ! | GTAAGCTCTTTGAATTTTGG+GGG | - | chr6.4:45183867-45183886 | MS.gene59246:CDS | 35.0% |
| ! | TTTTTGGATGTGCACTCTTA+CGG | - | chr6.4:45182681-45182700 | MS.gene59246:CDS | 35.0% |
| !! | CTATTTCTCTGCTCTTTTGA+TGG | + | chr6.4:45182086-45182105 | None:intergenic | 35.0% |
| !! | TTTAGTGAAGGACTTGTTAG+TGG | - | chr6.4:45181776-45181795 | MS.gene59246:CDS | 35.0% |
| !!! | GAAGGTTGGAGCATATTTTT+TGG | - | chr6.4:45182525-45182544 | MS.gene59246:intron | 35.0% |
| !!! | GATTTTTTTTGCCATCGTGA+AGG | - | chr6.4:45182035-45182054 | MS.gene59246:CDS | 35.0% |
| !!! | GGAGCATATTTTTTGGTCAT+CGG | - | chr6.4:45182532-45182551 | MS.gene59246:intron | 35.0% |
| AAACTGTGTCTGCATTTCGT+TGG | - | chr6.4:45182708-45182727 | MS.gene59246:CDS | 40.0% | |
| ACTTGATGAGGAAAGAAGGT+TGG | - | chr6.4:45182511-45182530 | MS.gene59246:intron | 40.0% | |
| ATTGTCACATGTCCGCTAAA+GGG | - | chr6.4:45184196-45184215 | MS.gene59246:CDS | 40.0% | |
| CCTCCAAAATCCAAACCTAA+AGG | - | chr6.4:45184085-45184104 | MS.gene59246:CDS | 40.0% | |
| CTTCTAACTACTTGCCATCA+CGG | - | chr6.4:45183945-45183964 | MS.gene59246:CDS | 40.0% | |
| GACATGTACAAAGTTTCACG+GGG | + | chr6.4:45183375-45183394 | None:intergenic | 40.0% | |
| GAGTGCACATCCAAAAAGTA+CGG | + | chr6.4:45182678-45182697 | None:intergenic | 40.0% | |
| GGACATGTACAAAGTTTCAC+GGG | + | chr6.4:45183376-45183395 | None:intergenic | 40.0% | |
| GGAGAGTTTCTTAAGGATGA+TGG | + | chr6.4:45183354-45183373 | None:intergenic | 40.0% | |
| GGGACATGTACAAAGTTTCA+CGG | + | chr6.4:45183377-45183396 | None:intergenic | 40.0% | |
| GGTTGAGCATGATTTAGTGA+AGG | - | chr6.4:45181764-45181783 | MS.gene59246:CDS | 40.0% | |
| GTAAAAAACGCACCTCTGAT+TGG | + | chr6.4:45182232-45182251 | None:intergenic | 40.0% | |
| GTGATGGCAAGTAGTTAGAA+GGG | + | chr6.4:45183946-45183965 | None:intergenic | 40.0% | |
| TAGAGCCTCCATGAAATTCA+TGG | - | chr6.4:45182058-45182077 | MS.gene59246:CDS | 40.0% | |
| TCAGAGATAGTTCGATAAGC+CGG | + | chr6.4:45182254-45182273 | None:intergenic | 40.0% | |
| TGGTTCCATGAATTTCATGG+AGG | + | chr6.4:45182066-45182085 | None:intergenic | 40.0% | |
| TTTGCCTTCTTTCCCTTTAG+CGG | + | chr6.4:45184211-45184230 | None:intergenic | 40.0% | |
| ! | CATGGAAAGACCGTACTTTT+TGG | - | chr6.4:45182665-45182684 | MS.gene59246:CDS | 40.0% |
| ! | GCAGAAAACATGCAGTGTTT+TGG | - | chr6.4:45183819-45183838 | MS.gene59246:CDS | 40.0% |
| ! | TGCATTTCGTTGGCTAATGA+AGG | - | chr6.4:45182718-45182737 | MS.gene59246:CDS | 40.0% |
| ! | TGTGGATTATGCAAAGGTGA+AGG | - | chr6.4:45184166-45184185 | MS.gene59246:CDS | 40.0% |
| ! | TTTAGGACGACCTTTAGGTT+TGG | + | chr6.4:45184098-45184117 | None:intergenic | 40.0% |
| !! | CCTTTAGGTTTGGATTTTGG+AGG | + | chr6.4:45184088-45184107 | None:intergenic | 40.0% |
| !! | CGACCTTTAGGTTTGGATTT+TGG | + | chr6.4:45184091-45184110 | None:intergenic | 40.0% |
| !! | CTGATTGGTTTAGCAAACCA+TGG | + | chr6.4:45182217-45182236 | None:intergenic | 40.0% |
| !! | TGGTTTGCTAAACCAATCAG+AGG | - | chr6.4:45182217-45182236 | MS.gene59246:CDS | 40.0% |
| !!! | AAACATGCAGTGTTTTGGGA+TGG | - | chr6.4:45183824-45183843 | MS.gene59246:CDS | 40.0% |
| !!! | ATCAGAGGTGCGTTTTTTAC+CGG | - | chr6.4:45182232-45182251 | MS.gene59246:CDS | 40.0% |
| !!! | CATCGGCTTCTTGTTTTGAT+TGG | - | chr6.4:45182549-45182568 | MS.gene59246:intron | 40.0% |
| ACAAGAATGGGGTTATGAGC+AGG | - | chr6.4:45182009-45182028 | MS.gene59246:CDS | 45.0% | |
| ATGTCCGCTAAAGGGAAAGA+AGG | - | chr6.4:45184204-45184223 | MS.gene59246:CDS | 45.0% | |
| CATTGTCACATGTCCGCTAA+AGG | - | chr6.4:45184195-45184214 | MS.gene59246:CDS | 45.0% | |
| CGTGATGGCAAGTAGTTAGA+AGG | + | chr6.4:45183947-45183966 | None:intergenic | 45.0% | |
| CTAAAGGTCGTCCTAAACGA+CGG | - | chr6.4:45184101-45184120 | MS.gene59246:CDS | 45.0% | |
| GAAGGTGATAAAGATGGGTC+TGG | - | chr6.4:45181864-45181883 | MS.gene59246:CDS | 45.0% | |
| TTCACGGGGAGAGTTTCTTA+AGG | + | chr6.4:45183361-45183380 | None:intergenic | 45.0% | |
| ! | CTATGAGCTTGCTCTTGTAG+AGG | + | chr6.4:45183680-45183699 | None:intergenic | 45.0% |
| !! | GGATCTTCTGAAGTATTGCG+AGG | - | chr6.4:45182448-45182467 | MS.gene59246:intron | 45.0% |
| !!! | TGCAGTGTTTTGGGATGGTA+AGG | - | chr6.4:45183829-45183848 | MS.gene59246:CDS | 45.0% |
| !!! | AATTATTTTTCATTAATTTT+AGG | - | chr6.4:45183565-45183584 | MS.gene59246:CDS | 5.0% |
| AAACGACGGCGACTTAAAGG+TGG | - | chr6.4:45184115-45184134 | MS.gene59246:CDS | 50.0% | |
| AATACTCTCCGATCTTCCGG+TGG | + | chr6.4:45183221-45183240 | None:intergenic | 50.0% | |
| CCTAAACGACGGCGACTTAA+AGG | - | chr6.4:45184112-45184131 | MS.gene59246:CDS | 50.0% | |
| CCTTTAAGTCGCCGTCGTTT+AGG | + | chr6.4:45184115-45184134 | None:intergenic | 50.0% | |
| CTAACTACTTGCCATCACGG+TGG | - | chr6.4:45183948-45183967 | MS.gene59246:CDS | 50.0% | |
| GATGACAACCACCGGAAGAT+CGG | - | chr6.4:45183210-45183229 | MS.gene59246:intron | 50.0% | |
| GTTGTAACTCGCCACTCAGT+TGG | + | chr6.4:45182176-45182195 | None:intergenic | 50.0% | |
| TTTGGTGGGATGACAACCAC+CGG | - | chr6.4:45183202-45183221 | MS.gene59246:intron | 50.0% | |
| ! | CGTCGTTTAGGACGACCTTT+AGG | + | chr6.4:45184103-45184122 | None:intergenic | 50.0% |
| GCTTGAAGCAACCACCGTGA+TGG | + | chr6.4:45183962-45183981 | None:intergenic | 55.0% | |
| TGGAGGCTCTACCTTCACGA+TGG | + | chr6.4:45182049-45182068 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 45181660 | 45184291 | 45181660 | ID=MS.gene59246 |
| chr6.4 | mRNA | 45181660 | 45184291 | 45181660 | ID=MS.gene59246.t1;Parent=MS.gene59246 |
| chr6.4 | exon | 45183212 | 45184291 | 45183212 | ID=MS.gene59246.t1.exon1;Parent=MS.gene59246.t1 |
| chr6.4 | CDS | 45183212 | 45184291 | 45183212 | ID=cds.MS.gene59246.t1;Parent=MS.gene59246.t1 |
| chr6.4 | exon | 45182651 | 45183091 | 45182651 | ID=MS.gene59246.t1.exon2;Parent=MS.gene59246.t1 |
| chr6.4 | CDS | 45182651 | 45183091 | 45182651 | ID=cds.MS.gene59246.t1;Parent=MS.gene59246.t1 |
| chr6.4 | exon | 45181660 | 45182364 | 45181660 | ID=MS.gene59246.t1.exon3;Parent=MS.gene59246.t1 |
| chr6.4 | CDS | 45181660 | 45182364 | 45181660 | ID=cds.MS.gene59246.t1;Parent=MS.gene59246.t1 |
| Gene Sequence |
| Protein sequence |
