Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59299.t1 | XP_024630853.1 | 71.7 | 667 | 104 | 7 | 1 | 586 | 55 | 717 | 3.10E-213 | 751.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59299.t1 | O24606 | 56.3 | 270 | 111 | 2 | 31 | 294 | 37 | 305 | 4.9e-82 | 307.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59299.t1 | G7KNC0 | 78.2 | 505 | 83 | 5 | 1 | 487 | 1 | 496 | 3.5e-198 | 701.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59299.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59299.t1 | MTR_6g460640 | 78.471 | 641 | 105 | 7 | 1 | 614 | 1 | 635 | 0.0 | 972 |
| MS.gene59299.t1 | MTR_6g060600 | 80.844 | 616 | 82 | 6 | 1 | 589 | 1 | 607 | 0.0 | 954 |
| MS.gene59299.t1 | MTR_3g010790 | 50.199 | 502 | 184 | 14 | 91 | 586 | 1 | 442 | 2.44e-146 | 434 |
| MS.gene59299.t1 | MTR_3g078770 | 41.685 | 463 | 216 | 13 | 42 | 460 | 51 | 503 | 4.24e-107 | 337 |
| MS.gene59299.t1 | MTR_5g087790 | 49.394 | 330 | 155 | 5 | 4 | 326 | 14 | 338 | 3.58e-106 | 334 |
| MS.gene59299.t1 | MTR_2g098470 | 52.434 | 267 | 116 | 3 | 32 | 290 | 27 | 290 | 2.36e-93 | 300 |
| MS.gene59299.t1 | MTR_3g087530 | 50.388 | 258 | 106 | 6 | 43 | 287 | 32 | 280 | 2.40e-84 | 271 |
| MS.gene59299.t1 | MTR_8g091370 | 47.191 | 267 | 132 | 5 | 29 | 287 | 6 | 271 | 4.11e-76 | 250 |
| MS.gene59299.t1 | MTR_1g024420 | 84.762 | 105 | 8 | 1 | 37 | 133 | 4 | 108 | 1.58e-54 | 181 |
| MS.gene59299.t1 | MTR_6g060630 | 64.780 | 159 | 27 | 3 | 458 | 587 | 35 | 193 | 2.85e-53 | 181 |
| MS.gene59299.t1 | MTR_7g095580 | 49.231 | 65 | 33 | 0 | 80 | 144 | 1 | 65 | 4.54e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59299.t1 | AT2G27050 | 38.095 | 525 | 255 | 13 | 28 | 503 | 32 | 535 | 8.43e-104 | 327 |
| MS.gene59299.t1 | AT3G20770 | 53.512 | 299 | 131 | 3 | 31 | 323 | 37 | 333 | 2.53e-103 | 327 |
| MS.gene59299.t1 | AT1G73730 | 50.179 | 279 | 125 | 4 | 21 | 290 | 3 | 276 | 1.63e-89 | 288 |
| MS.gene59299.t1 | AT1G73730 | 50.179 | 279 | 125 | 4 | 21 | 290 | 15 | 288 | 2.07e-89 | 289 |
| MS.gene59299.t1 | AT5G10120 | 48.855 | 262 | 126 | 3 | 34 | 287 | 14 | 275 | 4.79e-86 | 277 |
| MS.gene59299.t1 | AT5G65100 | 45.552 | 281 | 121 | 7 | 38 | 291 | 33 | 308 | 2.08e-77 | 257 |
| MS.gene59299.t1 | AT5G21120 | 46.275 | 255 | 126 | 3 | 48 | 291 | 53 | 307 | 2.20e-72 | 242 |
| MS.gene59299.t1 | AT5G21120 | 46.275 | 255 | 126 | 3 | 48 | 291 | 53 | 307 | 2.20e-72 | 242 |
| MS.gene59299.t1 | AT5G21120 | 46.275 | 255 | 126 | 3 | 48 | 291 | 60 | 314 | 2.83e-72 | 242 |
Find 127 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCCAACCATTTGAAAT+TGG | 0.189682 | 6.3:+63441059 | None:intergenic |
| TTCTCACATTTCTCTCTTGC+TGG | 0.213662 | 6.3:+63441146 | None:intergenic |
| CTATCAAGGAAACAACTATT+TGG | 0.224397 | 6.3:-63441459 | MS.gene59299:CDS |
| GCTAAATATGAAGCGGAAAA+TGG | 0.224421 | 6.3:-63441847 | MS.gene59299:CDS |
| TTCAGCAAGTCGAATGTAAT+TGG | 0.265774 | 6.3:+63441787 | None:intergenic |
| CGGAGATTTCCATTGGAAAA+AGG | 0.266811 | 6.3:-63441697 | MS.gene59299:CDS |
| TAGACTTGAGATTGCATGTT+AGG | 0.273999 | 6.3:+63439804 | None:intergenic |
| ATATCATGAGGCTTTCTATA+AGG | 0.282995 | 6.3:+63441595 | None:intergenic |
| GTCTGCACAAGGTGTCTCTT+TGG | 0.284518 | 6.3:-63435520 | MS.gene59299:CDS |
| CCATTTGAGGCTGCATGTTT+TGG | 0.297794 | 6.3:+63439676 | None:intergenic |
| CTTGTTGACCATAGAAATTT+TGG | 0.306348 | 6.3:+63439652 | None:intergenic |
| TCTGCACAAGGTGTCTCTTT+GGG | 0.326318 | 6.3:-63435519 | MS.gene59299:CDS |
| ACATGATTGACACCGTGATT+TGG | 0.327587 | 6.3:+63439885 | None:intergenic |
| AGAAGTGGTTTCTAATTTGA+TGG | 0.340005 | 6.3:-63440027 | MS.gene59299:CDS |
| TTCCTAATCTTCTGAATGTT+AGG | 0.342602 | 6.3:+63441520 | None:intergenic |
| TATCATGAGGCTTTCTATAA+GGG | 0.342723 | 6.3:+63441596 | None:intergenic |
| TTGATGGACATATATAATTC+AGG | 0.343880 | 6.3:-63440011 | MS.gene59299:CDS |
| CCTCCACCATGGTGGCCAAC+TGG | 0.352128 | 6.3:-63441670 | MS.gene59299:CDS |
| GGTTTGGAAGGTTTATGTTT+TGG | 0.353709 | 6.3:-63441566 | MS.gene59299:CDS |
| TTTGAAGCTTCTCCCCTTGA+AGG | 0.355072 | 6.3:+63442560 | None:intergenic |
| GATGCTCGTGGCTTCATCTA+TGG | 0.357885 | 6.3:-63441973 | MS.gene59299:CDS |
| ATGCATCCCAATGTTTATAA+TGG | 0.369089 | 6.3:-63442596 | MS.gene59299:CDS |
| GCGGCACTAATGATGATAGA+AGG | 0.375221 | 6.3:+63441737 | None:intergenic |
| AACAACCAATTTCAAATGGT+TGG | 0.377578 | 6.3:-63441064 | MS.gene59299:CDS |
| AACAATGCAAAACAAGATAA+AGG | 0.381513 | 6.3:-63442539 | MS.gene59299:CDS |
| TGATAGAAGGGAACTTAATA+TGG | 0.382620 | 6.3:+63441750 | None:intergenic |
| GTGCACAAGAGCGTGTATTA+AGG | 0.383295 | 6.3:-63442352 | MS.gene59299:intron |
| GTCATCGTCATCGTCATATG+AGG | 0.398932 | 6.3:-63441245 | MS.gene59299:CDS |
| CAAATGGACCAAAATTTCTA+TGG | 0.408363 | 6.3:-63439660 | MS.gene59299:CDS |
| CCAAAACATGCAGCCTCAAA+TGG | 0.412132 | 6.3:-63439676 | MS.gene59299:CDS |
| ATGAGATTTAGTGAAGATCT+TGG | 0.413274 | 6.3:-63441625 | MS.gene59299:CDS |
| CTCCTAACATTCAGAAGATT+AGG | 0.416065 | 6.3:-63441522 | MS.gene59299:CDS |
| GTGCTATCGCTAACCCTTCA+AGG | 0.426255 | 6.3:-63442574 | MS.gene59299:CDS |
| CACTTGCATGGTAGATTTGA+TGG | 0.428886 | 6.3:+63439943 | None:intergenic |
| CGACAACAACCAATTTCAAA+TGG | 0.432725 | 6.3:-63441068 | MS.gene59299:CDS |
| CGCCATGATTCTTTCCCAGT+TGG | 0.436325 | 6.3:+63441655 | None:intergenic |
| CTACCATGCAAGTGTTCAAC+AGG | 0.437195 | 6.3:-63439934 | MS.gene59299:CDS |
| GTTGCAACCATGTTCATAAC+TGG | 0.438691 | 6.3:+63439711 | None:intergenic |
| CAGGTACATGTTAAAGATGA+TGG | 0.441014 | 6.3:-63442004 | MS.gene59299:CDS |
| CTCATGATATGAAGAAGGTT+TGG | 0.444200 | 6.3:-63441582 | MS.gene59299:CDS |
| AACAAGAGAAAACGTGAACT+TGG | 0.466849 | 6.3:-63441217 | MS.gene59299:CDS |
| CTCTTTGGGATGCCTAGCTA+CGG | 0.470440 | 6.3:-63435505 | MS.gene59299:CDS |
| TTATTACAAGGAAAGATCAA+TGG | 0.471045 | 6.3:-63435418 | MS.gene59299:CDS |
| ATGAACATGGTTGCAACTCC+CGG | 0.472448 | 6.3:-63439705 | MS.gene59299:CDS |
| GAACACCATCATGAGTACTA+TGG | 0.478356 | 6.3:-63439847 | MS.gene59299:CDS |
| GATATGCCACGGGAGAGAAC+TGG | 0.483047 | 6.3:+63435453 | None:intergenic |
| CATCAGAAAATTTACGAGGC+TGG | 0.485103 | 6.3:-63441915 | MS.gene59299:CDS |
| AATCAGATCATTCATCATAC+AGG | 0.485290 | 6.3:-63440968 | MS.gene59299:intron |
| AAGAGACAATACTACAACAT+TGG | 0.489191 | 6.3:-63442402 | MS.gene59299:CDS |
| ACGTGTGCAAGCTGCGGTAC+CGG | 0.490700 | 6.3:-63440996 | MS.gene59299:CDS |
| ACAAATTATGAAAAGTTGAA+TGG | 0.493728 | 6.3:-63441814 | MS.gene59299:CDS |
| CTCCACCATGGTGGCCAACT+GGG | 0.496691 | 6.3:-63441669 | MS.gene59299:CDS |
| AAGGGAACTTAATATGGTAT+CGG | 0.502090 | 6.3:+63441756 | None:intergenic |
| ATAGCACCATTATAAACATT+GGG | 0.502724 | 6.3:+63442590 | None:intergenic |
| TCAGCCGTTCATTTATTACA+AGG | 0.507315 | 6.3:-63435430 | MS.gene59299:CDS |
| CAAAATTTCTATGGTCAACA+AGG | 0.508752 | 6.3:-63439651 | MS.gene59299:CDS |
| TCTTTCCCAGTTGGCCACCA+TGG | 0.508797 | 6.3:+63441664 | None:intergenic |
| AGGGAACTTAATATGGTATC+GGG | 0.509697 | 6.3:+63441757 | None:intergenic |
| ACAAGATAAACTCACTATCA+AGG | 0.510152 | 6.3:-63441473 | MS.gene59299:CDS |
| ACAAGGAAAGATCAATGGAT+TGG | 0.511259 | 6.3:-63435413 | MS.gene59299:CDS |
| CCAGTTGGCCACCATGGTGG+AGG | 0.511934 | 6.3:+63441670 | None:intergenic |
| AATGGAAATCTCCGTTGTGG+TGG | 0.514931 | 6.3:+63441706 | None:intergenic |
| TTGAAGCTTCTCCCCTTGAA+GGG | 0.515863 | 6.3:+63442561 | None:intergenic |
| GAGAATCTGCTCCCGTAGCT+AGG | 0.516506 | 6.3:+63435493 | None:intergenic |
| TTATGATTAACACTGGGAGT+TGG | 0.518246 | 6.3:+63439972 | None:intergenic |
| ACCACAACGGAGATTTCCAT+TGG | 0.522988 | 6.3:-63441704 | MS.gene59299:CDS |
| GATAGCACCATTATAAACAT+TGG | 0.531143 | 6.3:+63442589 | None:intergenic |
| GGCCAACTGGGAAAGAATCA+TGG | 0.537608 | 6.3:-63441657 | MS.gene59299:CDS |
| TCTCCTGTTGAACACTTGCA+TGG | 0.543277 | 6.3:+63439931 | None:intergenic |
| CTTTCCTTGTAATAAATGAA+CGG | 0.546312 | 6.3:+63435426 | None:intergenic |
| CTCATTGGTTTGCCCTCGTG+AGG | 0.546764 | 6.3:+63441943 | None:intergenic |
| TTAGGATTAACACTAGGAGT+TGG | 0.547413 | 6.3:+63439822 | None:intergenic |
| TCATATTTAGCAATTGCCGC+TGG | 0.547452 | 6.3:+63441859 | None:intergenic |
| CAAACCTTCTTCATATCATG+AGG | 0.548092 | 6.3:+63441583 | None:intergenic |
| TGATATGAAGAAGGTTTGGA+AGG | 0.551483 | 6.3:-63441578 | MS.gene59299:CDS |
| CAGAAAATTTACGAGGCTGG+TGG | 0.554585 | 6.3:-63441912 | MS.gene59299:CDS |
| GCTTGCACACGTTGGTCAAG+AGG | 0.560353 | 6.3:+63441007 | None:intergenic |
| TCTTTGGGATGCCTAGCTAC+GGG | 0.560664 | 6.3:-63435504 | MS.gene59299:CDS |
| CAAGTGTTCATGAGCATCAG+AGG | 0.561855 | 6.3:-63439776 | MS.gene59299:CDS |
| TGAATGATCTGATTTGCAAC+CGG | 0.563371 | 6.3:+63440977 | None:intergenic |
| CATCATTGAAGTATTCATCA+TGG | 0.563846 | 6.3:+63439746 | None:intergenic |
| TTCCCAGTTGGCCACCATGG+TGG | 0.564701 | 6.3:+63441667 | None:intergenic |
| AACAATGCAGATAATTACTC+AGG | 0.567143 | 6.3:-63440056 | MS.gene59299:intron |
| TCCAATGGAAATCTCCGTTG+TGG | 0.567968 | 6.3:+63441703 | None:intergenic |
| TGCTATCGCTAACCCTTCAA+GGG | 0.574060 | 6.3:-63442573 | MS.gene59299:CDS |
| AAGTAATTATGTGCTTGTTG+AGG | 0.574583 | 6.3:-63441353 | MS.gene59299:CDS |
| GTGCATGTTATGATTAACAC+TGG | 0.575039 | 6.3:+63439965 | None:intergenic |
| AAAGCCTCATGATATGAAGA+AGG | 0.576052 | 6.3:-63441587 | MS.gene59299:CDS |
| GCAGATAATTACTCAGGAGG+AGG | 0.578469 | 6.3:-63440050 | MS.gene59299:intron |
| ATACTACAACATTGGAGCAA+AGG | 0.585704 | 6.3:-63442394 | MS.gene59299:CDS |
| ATCATGAGGCTTTCTATAAG+GGG | 0.587351 | 6.3:+63441597 | None:intergenic |
| CGGCACTAATGATGATAGAA+GGG | 0.589144 | 6.3:+63441738 | None:intergenic |
| CACTTTACTAGTACACAACT+AGG | 0.591972 | 6.3:-63441115 | MS.gene59299:CDS |
| CTATGGAGTAATACCTCACG+AGG | 0.599594 | 6.3:-63441956 | MS.gene59299:CDS |
| GCTAACTATTGAGGAACTAG+AGG | 0.611138 | 6.3:-63442480 | MS.gene59299:CDS |
| TGCAAAACAAGATAAAGGAA+AGG | 0.611308 | 6.3:-63442534 | MS.gene59299:CDS |
| ATGGAAATCTCCGTTGTGGT+GGG | 0.614439 | 6.3:+63441707 | None:intergenic |
| GCAAAGGAAAAGAAAGACAA+TGG | 0.615257 | 6.3:-63442378 | MS.gene59299:CDS |
| TTCAATGCCAGTTATGAACA+TGG | 0.616146 | 6.3:-63439718 | MS.gene59299:CDS |
| GGCAATTGCTAAATATGAAG+CGG | 0.618376 | 6.3:-63441854 | MS.gene59299:CDS |
| TTACTCAGGAGGAGGAGAAG+TGG | 0.624741 | 6.3:-63440042 | MS.gene59299:CDS |
| GGAACATAGTCAAACAGTCA+AGG | 0.631933 | 6.3:-63441501 | MS.gene59299:CDS |
| TGAACGGCTGAGATATGCCA+CGG | 0.632055 | 6.3:+63435442 | None:intergenic |
| AAAATTTCTATGGTCAACAA+GGG | 0.632348 | 6.3:-63439650 | MS.gene59299:CDS |
| AAATTTCTATGGTCAACAAG+GGG | 0.633963 | 6.3:-63439649 | MS.gene59299:CDS |
| CGTTGTGGTGGGTCACAATG+CGG | 0.634330 | 6.3:+63441718 | None:intergenic |
| CGCATTGTGACCCACCACAA+CGG | 0.638363 | 6.3:-63441717 | MS.gene59299:CDS |
| TGGAACCATAGTACTCATGA+TGG | 0.638379 | 6.3:+63439842 | None:intergenic |
| TGGAATTCATGTTGATCAAG+AGG | 0.645230 | 6.3:+63441166 | None:intergenic |
| AGTACTATGATTCCAAATCA+CGG | 0.648005 | 6.3:-63439897 | MS.gene59299:CDS |
| ATGGAAGTTTGTGATGCTCG+TGG | 0.649462 | 6.3:-63441985 | MS.gene59299:CDS |
| AATGCAGATAATTACTCAGG+AGG | 0.653637 | 6.3:-63440053 | MS.gene59299:intron |
| TCATCGTCATCGTCATATGA+GGG | 0.656973 | 6.3:-63441244 | MS.gene59299:CDS |
| TGACCAACGTGTGCAAGCTG+CGG | 0.662625 | 6.3:-63441002 | MS.gene59299:CDS |
| GAACGGCTGAGATATGCCAC+GGG | 0.669336 | 6.3:+63435443 | None:intergenic |
| CACGAGGGCAAACCAATGAG+TGG | 0.675933 | 6.3:-63441940 | MS.gene59299:CDS |
| TCATGAGGCTTTCTATAAGG+GGG | 0.678672 | 6.3:+63441598 | None:intergenic |
| AATTTCTATGGTCAACAAGG+GGG | 0.688284 | 6.3:-63439648 | MS.gene59299:CDS |
| GACGATGACGATGATGCTGA+TGG | 0.692657 | 6.3:+63441259 | None:intergenic |
| TGCATGTTAGGATTAACACT+AGG | 0.694009 | 6.3:+63439816 | None:intergenic |
| GCTATCGCTAACCCTTCAAG+GGG | 0.702578 | 6.3:-63442572 | MS.gene59299:CDS |
| AAGGCATTCCTCCACCATGG+TGG | 0.706316 | 6.3:-63441678 | MS.gene59299:CDS |
| GGTTCATCAGAAAATTTACG+AGG | 0.727192 | 6.3:-63441919 | MS.gene59299:CDS |
| GTACCGCAGCTTGCACACGT+TGG | 0.738322 | 6.3:+63440999 | None:intergenic |
| TGCATGTTATGATTAACACT+GGG | 0.739011 | 6.3:+63439966 | None:intergenic |
| CAACTGGGAAAGAATCATGG+CGG | 0.758935 | 6.3:-63441654 | MS.gene59299:CDS |
| TATGGAGTAATACCTCACGA+GGG | 0.784582 | 6.3:-63441955 | MS.gene59299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 63435407 | 63442618 | 63435407 | ID=MS.gene59299 |
| chr6.3 | mRNA | 63435407 | 63442618 | 63435407 | ID=MS.gene59299.t1;Parent=MS.gene59299 |
| chr6.3 | exon | 63442353 | 63442618 | 63442353 | ID=MS.gene59299.t1.exon1;Parent=MS.gene59299.t1 |
| chr6.3 | CDS | 63442353 | 63442618 | 63442353 | ID=cds.MS.gene59299.t1;Parent=MS.gene59299.t1 |
| chr6.3 | exon | 63440969 | 63442023 | 63440969 | ID=MS.gene59299.t1.exon2;Parent=MS.gene59299.t1 |
| chr6.3 | CDS | 63440969 | 63442023 | 63440969 | ID=cds.MS.gene59299.t1;Parent=MS.gene59299.t1 |
| chr6.3 | exon | 63439623 | 63440068 | 63439623 | ID=MS.gene59299.t1.exon3;Parent=MS.gene59299.t1 |
| chr6.3 | CDS | 63439623 | 63440068 | 63439623 | ID=cds.MS.gene59299.t1;Parent=MS.gene59299.t1 |
| chr6.3 | exon | 63435407 | 63435541 | 63435407 | ID=MS.gene59299.t1.exon4;Parent=MS.gene59299.t1 |
| chr6.3 | CDS | 63435407 | 63435541 | 63435407 | ID=cds.MS.gene59299.t1;Parent=MS.gene59299.t1 |
| Gene Sequence |
| Protein sequence |