Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59419.t1 | XP_003612086.1 | 77.9 | 331 | 54 | 5 | 1 | 320 | 1 | 323 | 1.00E-111 | 413.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59419.t1 | Q9XGX0 | 45.3 | 274 | 104 | 9 | 69 | 320 | 82 | 331 | 9.9e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59419.t1 | G7KGA2 | 77.9 | 331 | 54 | 5 | 1 | 320 | 1 | 323 | 7.4e-112 | 413.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59419.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59419.t1 | MTR_5g021130 | 87.048 | 332 | 22 | 8 | 1 | 320 | 1 | 323 | 0.0 | 516 |
| MS.gene59419.t1 | MTR_8g076620 | 53.890 | 347 | 117 | 12 | 1 | 320 | 1 | 331 | 3.11e-95 | 285 |
| MS.gene59419.t1 | MTR_3g112510 | 42.633 | 319 | 148 | 12 | 1 | 315 | 1 | 288 | 9.13e-61 | 196 |
| MS.gene59419.t1 | MTR_5g089750 | 49.032 | 155 | 64 | 3 | 106 | 247 | 249 | 401 | 2.98e-39 | 144 |
| MS.gene59419.t1 | MTR_4g071110 | 45.161 | 155 | 64 | 3 | 95 | 249 | 6 | 139 | 2.38e-38 | 137 |
| MS.gene59419.t1 | MTR_3g014660 | 44.375 | 160 | 74 | 3 | 106 | 252 | 134 | 291 | 3.73e-38 | 138 |
| MS.gene59419.t1 | MTR_8g039110 | 41.765 | 170 | 76 | 3 | 106 | 255 | 124 | 290 | 3.00e-34 | 127 |
| MS.gene59419.t1 | MTR_1g023230 | 52.991 | 117 | 37 | 3 | 104 | 209 | 120 | 229 | 2.17e-27 | 107 |
| MS.gene59419.t1 | MTR_0363s0040 | 77.778 | 45 | 10 | 0 | 106 | 150 | 124 | 168 | 6.57e-21 | 90.1 |
| MS.gene59419.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 108 | 140 | 44 | 76 | 1.10e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59419.t1 | AT3G51060 | 43.669 | 387 | 134 | 13 | 1 | 320 | 1 | 370 | 5.08e-77 | 240 |
| MS.gene59419.t1 | AT5G66350 | 48.045 | 358 | 121 | 16 | 1 | 320 | 1 | 331 | 3.95e-75 | 234 |
| MS.gene59419.t1 | AT5G66350 | 48.116 | 345 | 116 | 15 | 1 | 307 | 1 | 320 | 8.01e-73 | 228 |
| MS.gene59419.t1 | AT5G66350 | 48.116 | 345 | 116 | 15 | 1 | 307 | 1 | 320 | 1.58e-72 | 227 |
| MS.gene59419.t1 | AT1G19790 | 40.164 | 366 | 150 | 13 | 1 | 319 | 1 | 344 | 4.41e-67 | 214 |
| MS.gene59419.t1 | AT1G19790 | 40.164 | 366 | 150 | 13 | 1 | 319 | 1 | 344 | 4.41e-67 | 214 |
| MS.gene59419.t1 | AT1G75520 | 51.667 | 240 | 81 | 9 | 102 | 320 | 121 | 346 | 1.69e-65 | 210 |
| MS.gene59419.t1 | AT4G36260 | 38.166 | 338 | 170 | 13 | 1 | 318 | 1 | 319 | 4.46e-49 | 166 |
| MS.gene59419.t1 | AT2G18120 | 41.961 | 255 | 88 | 10 | 1 | 249 | 6 | 206 | 1.33e-45 | 154 |
| MS.gene59419.t1 | AT2G21400 | 52.027 | 148 | 53 | 3 | 103 | 247 | 7 | 139 | 9.93e-45 | 151 |
| MS.gene59419.t1 | AT2G21400 | 52.027 | 148 | 53 | 3 | 103 | 247 | 6 | 138 | 1.11e-44 | 151 |
| MS.gene59419.t1 | AT2G18120 | 41.339 | 254 | 89 | 10 | 1 | 249 | 6 | 204 | 1.12e-43 | 149 |
| MS.gene59419.t1 | AT2G21400 | 51.034 | 145 | 44 | 3 | 103 | 247 | 7 | 124 | 4.34e-43 | 146 |
| MS.gene59419.t1 | AT2G21400 | 51.034 | 145 | 44 | 3 | 103 | 247 | 6 | 123 | 5.11e-43 | 146 |
| MS.gene59419.t1 | AT5G12330 | 45.570 | 158 | 70 | 2 | 106 | 247 | 112 | 269 | 5.50e-37 | 135 |
| MS.gene59419.t1 | AT5G12330 | 45.570 | 158 | 70 | 2 | 106 | 247 | 112 | 269 | 5.50e-37 | 135 |
| MS.gene59419.t1 | AT5G12330 | 45.570 | 158 | 70 | 2 | 106 | 247 | 199 | 356 | 9.39e-37 | 136 |
| MS.gene59419.t1 | AT5G33210 | 62.500 | 88 | 24 | 2 | 104 | 183 | 15 | 101 | 2.30e-29 | 108 |
| MS.gene59419.t1 | AT5G33210 | 60.920 | 87 | 27 | 1 | 104 | 183 | 50 | 136 | 7.14e-29 | 109 |
| MS.gene59419.t1 | AT3G54430 | 40.000 | 150 | 76 | 4 | 102 | 250 | 37 | 173 | 3.52e-27 | 105 |
| MS.gene59419.t1 | AT5G12330 | 86.957 | 46 | 6 | 0 | 106 | 151 | 112 | 157 | 6.61e-23 | 95.1 |
Find 79 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGAAGAGATAAGGTTTA+AGG | 0.199519 | 5.4:-12929319 | None:intergenic |
| TACTCCTCTGGTGTTGTGTT+AGG | 0.305453 | 5.4:+12928116 | MS.gene59419:CDS |
| TGTTGTTGTTGAGATGATTT+AGG | 0.309644 | 5.4:-12928380 | None:intergenic |
| TCCCTGATGCCACTGCTGTT+GGG | 0.341808 | 5.4:+12929340 | MS.gene59419:CDS |
| ATAATCCAACAACAGAATTC+TGG | 0.358326 | 5.4:+12927964 | MS.gene59419:CDS |
| ACTAGAATTAGAGGCGTTTC+CGG | 0.373528 | 5.4:-12929268 | None:intergenic |
| TGGGAATAATAGTTACAATA+TGG | 0.377378 | 5.4:+12929242 | MS.gene59419:CDS |
| GTCCCTGATGCCACTGCTGT+TGG | 0.380059 | 5.4:+12929339 | MS.gene59419:CDS |
| TCCCCAACAGCAGTGGCATC+AGG | 0.384962 | 5.4:-12929342 | None:intergenic |
| AGAGTGAGTGAAGGGTTTGT+AGG | 0.387801 | 5.4:-12928455 | None:intergenic |
| TTATACCAGAATTCTGTTGT+TGG | 0.398181 | 5.4:-12927969 | None:intergenic |
| TTGGATTATTATTATTCTGT+TGG | 0.399176 | 5.4:-12927950 | None:intergenic |
| TAACTATTATTCCCATGATC+TGG | 0.405584 | 5.4:-12929234 | None:intergenic |
| TGAATTCTCCAGCAGAGTTC+AGG | 0.409422 | 5.4:+12929106 | MS.gene59419:CDS |
| TATGATTATGGTCCAGATCA+TGG | 0.413474 | 5.4:+12929222 | MS.gene59419:CDS |
| TGAATGATGAATCAAGATCT+TGG | 0.413551 | 5.4:-12929444 | None:intergenic |
| CTTTCTCTTCTTCTAGCAGC+AGG | 0.421698 | 5.4:-12928335 | None:intergenic |
| AAACTCATGTTAAGAGTACT+TGG | 0.425175 | 5.4:+12928309 | MS.gene59419:CDS |
| ACAGAAGAGATAAGGTTTAA+GGG | 0.430955 | 5.4:-12929318 | None:intergenic |
| GTGGGAAGTGGAAGTGGAAG+TGG | 0.430984 | 5.4:+12928191 | MS.gene59419:CDS |
| TGTTAGGAGTGGGACCTACT+AGG | 0.445348 | 5.4:+12928132 | MS.gene59419:CDS |
| CCCTGATGCCACTGCTGTTG+GGG | 0.445701 | 5.4:+12929341 | MS.gene59419:CDS |
| GAGTGTACCACTAGAATTAG+AGG | 0.455284 | 5.4:-12929277 | None:intergenic |
| GCTGGAGAATTCACCACAGC+TGG | 0.457156 | 5.4:-12929096 | None:intergenic |
| GGTATAAGTTGTCAAGATTG+TGG | 0.462555 | 5.4:+12928215 | MS.gene59419:CDS |
| TGGAATAGTAGTAGTATGGC+TGG | 0.464468 | 5.4:+12927894 | None:intergenic |
| CAACAAGATCTTTACTCCTC+TGG | 0.470648 | 5.4:+12928104 | MS.gene59419:CDS |
| AAGAATTGCGTACCACTAGA+AGG | 0.471301 | 5.4:-12929414 | None:intergenic |
| TCTAGTGGTACACTCCTTGA+AGG | 0.471939 | 5.4:+12929285 | MS.gene59419:CDS |
| GAATGATGAATCAAGATCTT+GGG | 0.474567 | 5.4:-12929443 | None:intergenic |
| GTGTTTGTGGGAAGTGGAAG+TGG | 0.476364 | 5.4:+12928185 | MS.gene59419:CDS |
| CCCTTCACTCACTCTCCCTT+CGG | 0.477549 | 5.4:+12928463 | MS.gene59419:CDS |
| CTCACGCACCTGAACTCTGC+TGG | 0.492218 | 5.4:-12929114 | None:intergenic |
| TCTACTGTGTTTGTGGGAAG+TGG | 0.498034 | 5.4:+12928179 | MS.gene59419:CDS |
| GTTAGGAGTGGGACCTACTA+GGG | 0.499651 | 5.4:+12928133 | MS.gene59419:CDS |
| AGGGCTGAGCCACCCCTTCA+AGG | 0.501243 | 5.4:-12929299 | None:intergenic |
| TCAGAAGAACAAACCCTAGT+AGG | 0.513659 | 5.4:-12928146 | None:intergenic |
| GTATAAGTTGTCAAGATTGT+GGG | 0.521679 | 5.4:+12928216 | MS.gene59419:CDS |
| GAATAGATCTACTGTGTTTG+TGG | 0.527218 | 5.4:+12928172 | MS.gene59419:CDS |
| CTCTGGTGTTGTGTTAGGAG+TGG | 0.527736 | 5.4:+12928121 | MS.gene59419:CDS |
| TAAACGAGTGCAAGCTAAAG+AGG | 0.530926 | 5.4:-12928432 | None:intergenic |
| TCTGGTGTTGTGTTAGGAGT+GGG | 0.532211 | 5.4:+12928122 | MS.gene59419:CDS |
| CTAGTGGTACACTCCTTGAA+GGG | 0.532650 | 5.4:+12929286 | MS.gene59419:CDS |
| TCACTCACTCTCCCTTCGGC+AGG | 0.535224 | 5.4:+12928467 | MS.gene59419:CDS |
| ATGAAGGAATTAAGTGGAGC+TGG | 0.538890 | 5.4:-12929390 | None:intergenic |
| AGTGTTGTTGATGTTGATGT+TGG | 0.543270 | 5.4:-12928046 | None:intergenic |
| AGAACTTGTTGTAAGAGTAG+AGG | 0.544764 | 5.4:+12928275 | MS.gene59419:CDS |
| CATCAGGGACAGAAGAGATA+AGG | 0.546310 | 5.4:-12929326 | None:intergenic |
| AATAGTTACAATATGGCTAC+CGG | 0.553111 | 5.4:+12929249 | MS.gene59419:CDS |
| GGAGCTGGATACAAAGAAGA+AGG | 0.554978 | 5.4:-12929375 | None:intergenic |
| AATAGATCTACTGTGTTTGT+GGG | 0.559670 | 5.4:+12928173 | MS.gene59419:CDS |
| TCAACAGCTGTAAACATTGG+AGG | 0.560848 | 5.4:+12929177 | MS.gene59419:CDS |
| CAAGTTCTACATCTCATATG+AGG | 0.561087 | 5.4:-12928260 | None:intergenic |
| GAAGGCATGAAGGAATTAAG+TGG | 0.562752 | 5.4:-12929396 | None:intergenic |
| ATGATTATGGTCCAGATCAT+GGG | 0.563960 | 5.4:+12929223 | MS.gene59419:CDS |
| GTTGTTTCTAATTCATACCG+TGG | 0.564425 | 5.4:+12928008 | MS.gene59419:CDS |
| AACAATTTCCCCAACAGCAG+TGG | 0.567717 | 5.4:-12929349 | None:intergenic |
| ATGAATCAAGATCTTGGGTG+GGG | 0.569684 | 5.4:-12929438 | None:intergenic |
| AATTCCTTCATGCCTTCTAG+TGG | 0.576741 | 5.4:+12929402 | MS.gene59419:CDS |
| TGGTACACTCCTTGAAGGGG+TGG | 0.576962 | 5.4:+12929290 | MS.gene59419:CDS |
| CCCCAACAGCAGTGGCATCA+GGG | 0.585844 | 5.4:-12929341 | None:intergenic |
| TGATGAATCAAGATCTTGGG+TGG | 0.587902 | 5.4:-12929440 | None:intergenic |
| TATTCAACAGCTGTAAACAT+TGG | 0.588034 | 5.4:+12929174 | MS.gene59419:CDS |
| CAACAGCTGTAAACATTGGA+GGG | 0.602052 | 5.4:+12929178 | MS.gene59419:CDS |
| GATGAATCAAGATCTTGGGT+GGG | 0.609126 | 5.4:-12929439 | None:intergenic |
| CCGAAGGGAGAGTGAGTGAA+GGG | 0.613602 | 5.4:-12928463 | None:intergenic |
| GCCGAAGGGAGAGTGAGTGA+AGG | 0.615945 | 5.4:-12928464 | None:intergenic |
| CTCAGTTGATGAGAACGAAG+AGG | 0.617435 | 5.4:+12929143 | MS.gene59419:CDS |
| CGTACCACTAGAAGGCATGA+AGG | 0.617919 | 5.4:-12929406 | None:intergenic |
| AACTCATGTTAAGAGTACTT+GGG | 0.622414 | 5.4:+12928310 | MS.gene59419:CDS |
| GGAAGTGGAAGTGGAAGTGG+AGG | 0.626200 | 5.4:+12928194 | MS.gene59419:CDS |
| ATATATAATATACCTGCCGA+AGG | 0.628092 | 5.4:-12928479 | None:intergenic |
| TGAATCAAGATCTTGGGTGG+GGG | 0.629021 | 5.4:-12929437 | None:intergenic |
| AAATCATCTCAACAACAACA+TGG | 0.641154 | 5.4:+12928383 | MS.gene59419:CDS |
| TAGTGGTACACTCCTTGAAG+GGG | 0.649565 | 5.4:+12929287 | MS.gene59419:CDS |
| CACTCCTAACACAACACCAG+AGG | 0.667381 | 5.4:-12928120 | None:intergenic |
| TATATAATATACCTGCCGAA+GGG | 0.682372 | 5.4:-12928478 | None:intergenic |
| GGAAACGCCTCTAATTCTAG+TGG | 0.698556 | 5.4:+12929270 | MS.gene59419:CDS |
| GGTTCCAAATCTCAAAACCA+CGG | 0.709690 | 5.4:-12928025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTAATTATCATAAAAA+AGG | + | chr5.4:12929051-12929070 | MS.gene59419:intron | 10.0% |
| !! | TTGTTAATTATCATAAAAAA+GGG | + | chr5.4:12929052-12929071 | MS.gene59419:intron | 10.0% |
| !! | TAAATATGTATATATCATCA+TGG | - | chr5.4:12928997-12929016 | None:intergenic | 15.0% |
| !! | AAACAAACAAACTATAAGTT+AGG | - | chr5.4:12929020-12929039 | None:intergenic | 20.0% |
| !! | TTGGATTATTATTATTCTGT+TGG | - | chr5.4:12927953-12927972 | None:intergenic | 20.0% |
| ! | GACATATATGAACAAAGAAA+AGG | - | chr5.4:12928832-12928851 | None:intergenic | 25.0% |
| ! | TGGGAATAATAGTTACAATA+TGG | + | chr5.4:12929242-12929261 | MS.gene59419:CDS | 25.0% |
| !! | AGAGGAATTTTGTATGATTA+TGG | + | chr5.4:12929210-12929229 | MS.gene59419:CDS | 25.0% |
| AAATCATCTCAACAACAACA+TGG | + | chr5.4:12928383-12928402 | MS.gene59419:CDS | 30.0% | |
| AATAGATCTACTGTGTTTGT+GGG | + | chr5.4:12928173-12928192 | MS.gene59419:CDS | 30.0% | |
| AATAGTTACAATATGGCTAC+CGG | + | chr5.4:12929249-12929268 | MS.gene59419:CDS | 30.0% | |
| ACAGAAGAGATAAGGTTTAA+GGG | - | chr5.4:12929321-12929340 | None:intergenic | 30.0% | |
| ATAATCCAACAACAGAATTC+TGG | + | chr5.4:12927964-12927983 | MS.gene59419:CDS | 30.0% | |
| ATATATAATATACCTGCCGA+AGG | - | chr5.4:12928482-12928501 | None:intergenic | 30.0% | |
| ATTCTCTTCCAAAACTTTCT+CGG | - | chr5.4:12928617-12928636 | None:intergenic | 30.0% | |
| CATTGAATAACTCATGTATC+TGG | - | chr5.4:12928902-12928921 | None:intergenic | 30.0% | |
| GTATAAGTTGTCAAGATTGT+GGG | + | chr5.4:12928216-12928235 | MS.gene59419:CDS | 30.0% | |
| TAACTATTATTCCCATGATC+TGG | - | chr5.4:12929237-12929256 | None:intergenic | 30.0% | |
| TATATAATATACCTGCCGAA+GGG | - | chr5.4:12928481-12928500 | None:intergenic | 30.0% | |
| TATTCAACAGCTGTAAACAT+TGG | + | chr5.4:12929174-12929193 | MS.gene59419:CDS | 30.0% | |
| TCATAAAAAAGGGCTATTAG+AGG | + | chr5.4:12929062-12929081 | MS.gene59419:intron | 30.0% | |
| TTATACCAGAATTCTGTTGT+TGG | - | chr5.4:12927972-12927991 | None:intergenic | 30.0% | |
| ! | CTTCTGAAAAAGATAAGTGA+AGG | + | chr5.4:12928589-12928608 | MS.gene59419:intron | 30.0% |
| ! | TGTTGTTGTTGAGATGATTT+AGG | - | chr5.4:12928383-12928402 | None:intergenic | 30.0% |
| !! | AAACTCATGTTAAGAGTACT+TGG | + | chr5.4:12928309-12928328 | MS.gene59419:CDS | 30.0% |
| !! | AACTCATGTTAAGAGTACTT+GGG | + | chr5.4:12928310-12928329 | MS.gene59419:CDS | 30.0% |
| !!! | ATGGCTGGTTTATTTTCATT+AGG | + | chr5.4:12927909-12927928 | MS.gene59419:CDS | 30.0% |
| AATGAATGGGATCAATGACA+GGG | + | chr5.4:12928705-12928724 | MS.gene59419:intron | 35.0% | |
| ATGATTATGGTCCAGATCAT+GGG | + | chr5.4:12929223-12929242 | MS.gene59419:CDS | 35.0% | |
| CAAGTTCTACATCTCATATG+AGG | - | chr5.4:12928263-12928282 | None:intergenic | 35.0% | |
| GAATAGATCTACTGTGTTTG+TGG | + | chr5.4:12928172-12928191 | MS.gene59419:CDS | 35.0% | |
| GACAGAAGAGATAAGGTTTA+AGG | - | chr5.4:12929322-12929341 | None:intergenic | 35.0% | |
| GGTATAAGTTGTCAAGATTG+TGG | + | chr5.4:12928215-12928234 | MS.gene59419:CDS | 35.0% | |
| TATGATTATGGTCCAGATCA+TGG | + | chr5.4:12929222-12929241 | MS.gene59419:CDS | 35.0% | |
| TGTTGTTCTGACGAATGAAT+GGG | + | chr5.4:12928692-12928711 | MS.gene59419:intron | 35.0% | |
| ! | AGTGTTGTTGATGTTGATGT+TGG | - | chr5.4:12928049-12928068 | None:intergenic | 35.0% |
| !! | AAAGTAGTGTTGTTGGTTTG+TGG | - | chr5.4:12928798-12928817 | None:intergenic | 35.0% |
| !! | AGAACTTGTTGTAAGAGTAG+AGG | + | chr5.4:12928275-12928294 | MS.gene59419:CDS | 35.0% |
| !! | GTTGTTTCTAATTCATACCG+TGG | + | chr5.4:12928008-12928027 | MS.gene59419:CDS | 35.0% |
| AAGAATTGCGTACCACTAGA+AGG | - | chr5.4:12929417-12929436 | None:intergenic | 40.0% | |
| AATTCCTTCATGCCTTCTAG+TGG | + | chr5.4:12929402-12929421 | MS.gene59419:CDS | 40.0% | |
| AGCTGTGAAAGTAGTGTTGT+TGG | - | chr5.4:12928805-12928824 | None:intergenic | 40.0% | |
| ATGAAGGAATTAAGTGGAGC+TGG | - | chr5.4:12929393-12929412 | None:intergenic | 40.0% | |
| CAACAAGATCTTTACTCCTC+TGG | + | chr5.4:12928104-12928123 | MS.gene59419:CDS | 40.0% | |
| CAACAGCTGTAAACATTGGA+GGG | + | chr5.4:12929178-12929197 | MS.gene59419:CDS | 40.0% | |
| GAATGAATGGGATCAATGAC+AGG | + | chr5.4:12928704-12928723 | MS.gene59419:intron | 40.0% | |
| GAGTGTACCACTAGAATTAG+AGG | - | chr5.4:12929280-12929299 | None:intergenic | 40.0% | |
| GGTTCCAAATCTCAAAACCA+CGG | - | chr5.4:12928028-12928047 | None:intergenic | 40.0% | |
| TAAACGAGTGCAAGCTAAAG+AGG | - | chr5.4:12928435-12928454 | None:intergenic | 40.0% | |
| TCAACAGCTGTAAACATTGG+AGG | + | chr5.4:12929177-12929196 | MS.gene59419:CDS | 40.0% | |
| TCAGAAGAACAAACCCTAGT+AGG | - | chr5.4:12928149-12928168 | None:intergenic | 40.0% | |
| ! | GAAGGCATGAAGGAATTAAG+TGG | - | chr5.4:12929399-12929418 | None:intergenic | 40.0% |
| ! | GTGTTGTTCTGACGAATGAA+TGG | + | chr5.4:12928691-12928710 | MS.gene59419:intron | 40.0% |
| ! | TCGTCAGAACAACACTGTTT+TGG | - | chr5.4:12928686-12928705 | None:intergenic | 40.0% |
| !! | ACTAGAATTAGAGGCGTTTC+CGG | - | chr5.4:12929271-12929290 | None:intergenic | 40.0% |
| !!! | ATTGGAGGGCATGTTTTTAG+AGG | + | chr5.4:12929192-12929211 | MS.gene59419:CDS | 40.0% |
| !!! | CATACCGTGGTTTTGAGATT+TGG | + | chr5.4:12928021-12928040 | MS.gene59419:CDS | 40.0% |
| !!! | TGAAGGTACCGAGAAAGTTT+TGG | + | chr5.4:12928606-12928625 | MS.gene59419:intron | 40.0% |
| AACAATTTCCCCAACAGCAG+TGG | - | chr5.4:12929352-12929371 | None:intergenic | 45.0% | |
| AGAGTGAGTGAAGGGTTTGT+AGG | - | chr5.4:12928458-12928477 | None:intergenic | 45.0% | |
| CATCAGGGACAGAAGAGATA+AGG | - | chr5.4:12929329-12929348 | None:intergenic | 45.0% | |
| CTAGTGGTACACTCCTTGAA+GGG | + | chr5.4:12929286-12929305 | MS.gene59419:CDS | 45.0% | |
| CTTTCTCTTCTTCTAGCAGC+AGG | - | chr5.4:12928338-12928357 | None:intergenic | 45.0% | |
| GGAAACGCCTCTAATTCTAG+TGG | + | chr5.4:12929270-12929289 | MS.gene59419:CDS | 45.0% | |
| GGAGCTGGATACAAAGAAGA+AGG | - | chr5.4:12929378-12929397 | None:intergenic | 45.0% | |
| TAGTGGTACACTCCTTGAAG+GGG | + | chr5.4:12929287-12929306 | MS.gene59419:CDS | 45.0% | |
| TCTACTGTGTTTGTGGGAAG+TGG | + | chr5.4:12928179-12928198 | MS.gene59419:CDS | 45.0% | |
| TCTAGTGGTACACTCCTTGA+AGG | + | chr5.4:12929285-12929304 | MS.gene59419:CDS | 45.0% | |
| TGAATTCTCCAGCAGAGTTC+AGG | + | chr5.4:12929106-12929125 | MS.gene59419:CDS | 45.0% | |
| ! | GGAGATGAATTTTCCAGCTG+TGG | + | chr5.4:12929083-12929102 | MS.gene59419:CDS | 45.0% |
| ! | TGTGGAAGAGTGAGTGTTGT+TGG | - | chr5.4:12928780-12928799 | None:intergenic | 45.0% |
| !! | CTCAGTTGATGAGAACGAAG+AGG | + | chr5.4:12929143-12929162 | MS.gene59419:CDS | 45.0% |
| !! | TACTCCTCTGGTGTTGTGTT+AGG | + | chr5.4:12928116-12928135 | MS.gene59419:CDS | 45.0% |
| !! | TCTGGTGTTGTGTTAGGAGT+GGG | + | chr5.4:12928122-12928141 | MS.gene59419:CDS | 45.0% |
| CACTCCTAACACAACACCAG+AGG | - | chr5.4:12928123-12928142 | None:intergenic | 50.0% | |
| GTGTTTGTGGGAAGTGGAAG+TGG | + | chr5.4:12928185-12928204 | MS.gene59419:CDS | 50.0% | |
| GTTAGGAGTGGGACCTACTA+GGG | + | chr5.4:12928133-12928152 | MS.gene59419:CDS | 50.0% | |
| TGTTAGGAGTGGGACCTACT+AGG | + | chr5.4:12928132-12928151 | MS.gene59419:CDS | 50.0% | |
| ! | CGTACCACTAGAAGGCATGA+AGG | - | chr5.4:12929409-12929428 | None:intergenic | 50.0% |
| !! | CTCTGGTGTTGTGTTAGGAG+TGG | + | chr5.4:12928121-12928140 | MS.gene59419:CDS | 50.0% |
| CCCTTCACTCACTCTCCCTT+CGG | + | chr5.4:12928463-12928482 | MS.gene59419:CDS | 55.0% | |
| CCGAAGGGAGAGTGAGTGAA+GGG | - | chr5.4:12928466-12928485 | None:intergenic | 55.0% | |
| GCTGGAGAATTCACCACAGC+TGG | - | chr5.4:12929099-12929118 | None:intergenic | 55.0% | |
| GGAAGTGGAAGTGGAAGTGG+AGG | + | chr5.4:12928194-12928213 | MS.gene59419:CDS | 55.0% | |
| GTGGGAAGTGGAAGTGGAAG+TGG | + | chr5.4:12928191-12928210 | MS.gene59419:CDS | 55.0% | |
| TCCCTGATGCCACTGCTGTT+GGG | + | chr5.4:12929340-12929359 | MS.gene59419:CDS | 55.0% | |
| TGGTACACTCCTTGAAGGGG+TGG | + | chr5.4:12929290-12929309 | MS.gene59419:CDS | 55.0% | |
| CCCCAACAGCAGTGGCATCA+GGG | - | chr5.4:12929344-12929363 | None:intergenic | 60.0% | |
| CCCTGATGCCACTGCTGTTG+GGG | + | chr5.4:12929341-12929360 | MS.gene59419:CDS | 60.0% | |
| CTCACGCACCTGAACTCTGC+TGG | - | chr5.4:12929117-12929136 | None:intergenic | 60.0% | |
| GCCGAAGGGAGAGTGAGTGA+AGG | - | chr5.4:12928467-12928486 | None:intergenic | 60.0% | |
| GTCCCTGATGCCACTGCTGT+TGG | + | chr5.4:12929339-12929358 | MS.gene59419:CDS | 60.0% | |
| TCACTCACTCTCCCTTCGGC+AGG | + | chr5.4:12928467-12928486 | MS.gene59419:CDS | 60.0% | |
| TCCCCAACAGCAGTGGCATC+AGG | - | chr5.4:12929345-12929364 | None:intergenic | 60.0% | |
| TGTTGCTGCTGCTGCTGCTG+AGG | - | chr5.4:12928089-12928108 | None:intergenic | 60.0% | |
| AGGGCTGAGCCACCCCTTCA+AGG | - | chr5.4:12929302-12929321 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12927909 | 12929455 | 12927909 | ID=MS.gene59419 |
| chr5.4 | mRNA | 12927909 | 12929455 | 12927909 | ID=MS.gene59419.t1;Parent=MS.gene59419 |
| chr5.4 | exon | 12927909 | 12928488 | 12927909 | ID=MS.gene59419.t1.exon1;Parent=MS.gene59419.t1 |
| chr5.4 | CDS | 12927909 | 12928488 | 12927909 | ID=cds.MS.gene59419.t1;Parent=MS.gene59419.t1 |
| chr5.4 | exon | 12929073 | 12929455 | 12929073 | ID=MS.gene59419.t1.exon2;Parent=MS.gene59419.t1 |
| chr5.4 | CDS | 12929073 | 12929455 | 12929073 | ID=cds.MS.gene59419.t1;Parent=MS.gene59419.t1 |
| Gene Sequence |
| Protein sequence |
