Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59462.t1 | XP_003612158.1 | 93.6 | 283 | 16 | 2 | 1 | 283 | 22 | 302 | 3.00E-147 | 531.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59462.t1 | Q6YBV1 | 46.0 | 274 | 111 | 8 | 4 | 274 | 35 | 274 | 5.3e-52 | 206.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59462.t1 | B7UCW4 | 93.6 | 283 | 16 | 2 | 1 | 283 | 22 | 302 | 2.1e-147 | 531.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59462.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59462.t1 | MTR_5g021930 | 96.466 | 283 | 8 | 2 | 1 | 283 | 22 | 302 | 0.0 | 568 |
| MS.gene59462.t1 | MTR_4g084550 | 67.164 | 67 | 21 | 1 | 5 | 71 | 60 | 125 | 9.43e-27 | 103 |
| MS.gene59462.t1 | MTR_8g107210 | 70.769 | 65 | 18 | 1 | 7 | 71 | 94 | 157 | 1.39e-25 | 104 |
| MS.gene59462.t1 | MTR_5g081990 | 59.459 | 74 | 26 | 2 | 9 | 79 | 33 | 105 | 1.93e-24 | 97.4 |
| MS.gene59462.t1 | MTR_7g060630 | 67.692 | 65 | 20 | 1 | 7 | 71 | 6 | 69 | 6.56e-24 | 96.7 |
| MS.gene59462.t1 | MTR_4g063735 | 68.254 | 63 | 19 | 1 | 9 | 71 | 25 | 86 | 1.23e-23 | 97.1 |
| MS.gene59462.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.73e-22 | 93.2 |
| MS.gene59462.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 2.03e-22 | 93.2 |
| MS.gene59462.t1 | MTR_8g095580 | 78.723 | 47 | 10 | 0 | 25 | 71 | 97 | 143 | 2.39e-19 | 83.2 |
| MS.gene59462.t1 | MTR_3g088485 | 76.596 | 47 | 11 | 0 | 25 | 71 | 95 | 141 | 4.23e-19 | 82.4 |
| MS.gene59462.t1 | MTR_7g025010 | 48.438 | 64 | 32 | 1 | 9 | 72 | 47 | 109 | 1.09e-14 | 74.3 |
| MS.gene59462.t1 | MTR_2g015000 | 44.928 | 69 | 37 | 1 | 3 | 71 | 49 | 116 | 4.36e-14 | 72.4 |
| MS.gene59462.t1 | MTR_7g066060 | 87.879 | 33 | 4 | 0 | 54 | 86 | 465 | 497 | 7.52e-13 | 68.6 |
| MS.gene59462.t1 | MTR_4g088070 | 43.548 | 62 | 34 | 1 | 9 | 70 | 29 | 89 | 1.35e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59462.t1 | AT2G17950 | 41.699 | 259 | 103 | 9 | 4 | 236 | 33 | 269 | 1.47e-47 | 160 |
| MS.gene59462.t1 | AT3G18010 | 70.769 | 65 | 18 | 1 | 7 | 71 | 74 | 137 | 9.80e-26 | 104 |
| MS.gene59462.t1 | AT5G59340 | 69.697 | 66 | 19 | 1 | 6 | 71 | 11 | 75 | 1.05e-25 | 102 |
| MS.gene59462.t1 | AT2G28610 | 65.152 | 66 | 22 | 1 | 6 | 71 | 5 | 69 | 2.58e-23 | 95.9 |
| MS.gene59462.t1 | AT3G11260 | 65.079 | 63 | 21 | 1 | 9 | 71 | 24 | 85 | 3.95e-23 | 94.0 |
| MS.gene59462.t1 | AT5G05770 | 62.319 | 69 | 25 | 1 | 9 | 77 | 29 | 96 | 5.12e-23 | 91.7 |
| MS.gene59462.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.22e-22 | 92.8 |
| MS.gene59462.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 7.71e-22 | 92.0 |
| MS.gene59462.t1 | AT2G01500 | 61.017 | 59 | 22 | 1 | 6 | 64 | 58 | 115 | 5.20e-19 | 84.7 |
| MS.gene59462.t1 | AT5G45980 | 52.381 | 63 | 29 | 1 | 9 | 71 | 55 | 116 | 5.27e-15 | 74.3 |
| MS.gene59462.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.10e-14 | 73.9 |
| MS.gene59462.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.16e-14 | 73.6 |
| MS.gene59462.t1 | AT1G20700 | 39.130 | 69 | 41 | 1 | 9 | 77 | 33 | 100 | 7.59e-11 | 59.7 |
Find 59 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 5.4:+13585893 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 5.4:+13585756 | None:intergenic |
| CTGTTATTGCTGCTGCTAAT+TGG | 0.280712 | 5.4:-13586741 | MS.gene59462:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | 5.4:+13585573 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 5.4:+13585849 | None:intergenic |
| TCTTCCATGATTTCTTCATT+TGG | 0.323131 | 5.4:+13585807 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 5.4:+13586916 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 5.4:-13585783 | MS.gene59462:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 5.4:+13586976 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | 5.4:-13586486 | MS.gene59462:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | 5.4:-13585687 | MS.gene59462:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 5.4:+13585738 | None:intergenic |
| GCAATAACAGTATTGTTGTT+TGG | 0.399113 | 5.4:+13586754 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 5.4:-13586492 | MS.gene59462:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 5.4:-13586889 | MS.gene59462:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 5.4:+13586715 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 5.4:-13585599 | MS.gene59462:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | 5.4:-13586661 | MS.gene59462:intron |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 5.4:-13585628 | MS.gene59462:CDS |
| ATGAAATGTTGTAATTAGAA+TGG | 0.431892 | 5.4:+13586668 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 5.4:+13585739 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 5.4:-13586819 | MS.gene59462:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 5.4:+13586771 | None:intergenic |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | 5.4:+13586487 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 5.4:+13586772 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 5.4:-13585606 | MS.gene59462:CDS |
| AAGACCAAATGAAGAAATCA+TGG | 0.463541 | 5.4:-13585811 | MS.gene59462:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 5.4:-13586501 | MS.gene59462:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 5.4:+13585691 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | 5.4:-13586968 | MS.gene59462:CDS |
| TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | 5.4:-13586520 | MS.gene59462:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.497436 | 5.4:-13585888 | MS.gene59462:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | 5.4:-13586949 | MS.gene59462:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 5.4:-13586877 | MS.gene59462:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 5.4:-13585921 | MS.gene59462:CDS |
| TAGGAGTGTACAATATCAGC+TGG | 0.518672 | 5.4:-13585942 | MS.gene59462:CDS |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 5.4:-13585726 | MS.gene59462:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 5.4:-13585660 | MS.gene59462:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 5.4:-13585893 | MS.gene59462:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 5.4:-13585648 | MS.gene59462:CDS |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 5.4:+13585730 | None:intergenic |
| AATATGGATCAACATGATGA+TGG | 0.557603 | 5.4:+13585865 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 5.4:+13585611 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 5.4:+13585729 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 5.4:-13586510 | MS.gene59462:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 5.4:-13585680 | MS.gene59462:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | 5.4:-13585684 | MS.gene59462:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 5.4:-13585897 | MS.gene59462:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 5.4:-13586472 | MS.gene59462:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 5.4:-13586903 | MS.gene59462:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 5.4:+13585598 | None:intergenic |
| GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | 5.4:+13585886 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 5.4:-13587005 | MS.gene59462:CDS |
| TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | 5.4:+13585885 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 5.4:+13585742 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 5.4:+13585743 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 5.4:-13585795 | MS.gene59462:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 5.4:-13587002 | MS.gene59462:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.790217 | 5.4:-13585723 | MS.gene59462:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5.4:13586201-13586220 | None:intergenic | 10.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5.4:13586202-13586221 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5.4:13586526-13586545 | MS.gene59462:CDS | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5.4:13586342-13586361 | MS.gene59462:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5.4:13586402-13586421 | None:intergenic | 15.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5.4:13586900-13586919 | MS.gene59462:CDS | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5.4:13586022-13586041 | None:intergenic | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | + | chr5.4:13585922-13585941 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5.4:13586373-13586392 | None:intergenic | 20.0% |
| !!! | TTTTTGTTCTTGTATCAAAA+AGG | + | chr5.4:13585966-13585985 | None:intergenic | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5.4:13585619-13585638 | MS.gene59462:CDS | 25.0% |
| ! | ATACTATACACATTAGACAA+AGG | + | chr5.4:13586233-13586252 | None:intergenic | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5.4:13585729-13585748 | MS.gene59462:CDS | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5.4:13586899-13586918 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCGTCTTCTTCTT+AGG | - | chr5.4:13586626-13586645 | MS.gene59462:intron | 25.0% |
| AAGACCAAATGAAGAAATCA+TGG | - | chr5.4:13586776-13586795 | MS.gene59462:CDS | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5.4:13585638-13585657 | MS.gene59462:CDS | 30.0% | |
| AATATGGATCAACATGATGA+TGG | + | chr5.4:13586725-13586744 | None:intergenic | 30.0% | |
| AATTACAACATTTCATCTGC+TGG | - | chr5.4:13585926-13585945 | MS.gene59462:CDS | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5.4:13586792-13586811 | MS.gene59462:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5.4:13585614-13585633 | None:intergenic | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5.4:13586804-13586823 | MS.gene59462:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5.4:13586903-13586922 | MS.gene59462:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | + | chr5.4:13586783-13586802 | None:intergenic | 30.0% | |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5.4:13586384-13586403 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5.4:13586741-13586760 | None:intergenic | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5.4:13586360-13586379 | None:intergenic | 30.0% |
| ! | GCAATAACAGTATTGTTGTT+TGG | + | chr5.4:13585836-13585855 | None:intergenic | 30.0% |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5.4:13585710-13585729 | MS.gene59462:CDS | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5.4:13586268-13586287 | MS.gene59462:intron | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5.4:13586907-13586926 | MS.gene59462:CDS | 35.0% | |
| CATATCCATAGTTACCAATC+TGG | + | chr5.4:13586103-13586122 | None:intergenic | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5.4:13585768-13585787 | MS.gene59462:CDS | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5.4:13586303-13586322 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | + | chr5.4:13586471-13586490 | None:intergenic | 35.0% | |
| TGTGTGTGTGTGTTTATGTA+GGG | - | chr5.4:13586033-13586052 | MS.gene59462:intron | 35.0% | |
| TTGTGTGTGTGTGTTTATGT+AGG | - | chr5.4:13586032-13586051 | MS.gene59462:intron | 35.0% | |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5.4:13586134-13586153 | None:intergenic | 35.0% |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5.4:13586101-13586120 | MS.gene59462:intron | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5.4:13586130-13586149 | MS.gene59462:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5.4:13586133-13586152 | None:intergenic | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5.4:13586129-13586148 | MS.gene59462:intron | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5.4:13585875-13585894 | None:intergenic | 35.0% |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5.4:13585818-13585837 | None:intergenic | 35.0% |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5.4:13586834-13586853 | None:intergenic | 40.0% | |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5.4:13585684-13585703 | MS.gene59462:CDS | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5.4:13586690-13586709 | MS.gene59462:CDS | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5.4:13586847-13586866 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5.4:13586861-13586880 | MS.gene59462:CDS | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5.4:13586851-13586870 | None:intergenic | 40.0% | |
| CTGTTATTGCTGCTGCTAAT+TGG | - | chr5.4:13585846-13585865 | MS.gene59462:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5.4:13586981-13587000 | MS.gene59462:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5.4:13586939-13586958 | MS.gene59462:CDS | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5.4:13586860-13586879 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5.4:13586852-13586871 | None:intergenic | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5.4:13585698-13585717 | MS.gene59462:CDS | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | + | chr5.4:13586468-13586487 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5.4:13586861-13586880 | None:intergenic | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | - | chr5.4:13586067-13586086 | MS.gene59462:intron | 40.0% | |
| ! | TAGGAGTGTACAATATCAGC+TGG | - | chr5.4:13586645-13586664 | MS.gene59462:intron | 40.0% |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5.4:13585819-13585838 | None:intergenic | 40.0% |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5.4:13586699-13586718 | MS.gene59462:CDS | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5.4:13586992-13587011 | None:intergenic | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5.4:13586979-13586998 | None:intergenic | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5.4:13586086-13586105 | MS.gene59462:intron | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5.4:13586848-13586867 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5.4:13586864-13586883 | MS.gene59462:CDS | 45.0% | |
| CATGGATGCATGAACCATGA+TGG | + | chr5.4:13586285-13586304 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5.4:13586694-13586713 | MS.gene59462:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5.4:13586697-13586716 | None:intergenic | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5.4:13585674-13585693 | None:intergenic | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5.4:13585585-13585604 | MS.gene59462:CDS | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5.4:13585582-13585601 | MS.gene59462:CDS | 45.0% | |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5.4:13586666-13586685 | MS.gene59462:CDS | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5.4:13586077-13586096 | MS.gene59462:intron | 45.0% | |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5.4:13586115-13586134 | MS.gene59462:intron | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5.4:13586927-13586946 | MS.gene59462:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5.4:13586959-13586978 | MS.gene59462:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5.4:13586095-13586114 | MS.gene59462:intron | 45.0% |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5.4:13586278-13586297 | None:intergenic | 45.0% |
| !! | AACATAAATTAAAATTAAAA+TGG | + | chr5.4:13586603-13586622 | None:intergenic | 5.0% |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5.4:13586988-13587007 | MS.gene59462:CDS | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | + | chr5.4:13586704-13586723 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | + | chr5.4:13586705-13586724 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13585578 | 13587031 | 13585578 | ID=MS.gene59462 |
| chr5.4 | mRNA | 13585578 | 13587031 | 13585578 | ID=MS.gene59462.t1;Parent=MS.gene59462 |
| chr5.4 | exon | 13586662 | 13587031 | 13586662 | ID=MS.gene59462.t1.exon1;Parent=MS.gene59462.t1 |
| chr5.4 | CDS | 13586662 | 13587031 | 13586662 | ID=cds.MS.gene59462.t1;Parent=MS.gene59462.t1 |
| chr5.4 | exon | 13586458 | 13586555 | 13586458 | ID=MS.gene59462.t1.exon2;Parent=MS.gene59462.t1 |
| chr5.4 | CDS | 13586458 | 13586555 | 13586458 | ID=cds.MS.gene59462.t1;Parent=MS.gene59462.t1 |
| chr5.4 | exon | 13585578 | 13585961 | 13585578 | ID=MS.gene59462.t1.exon3;Parent=MS.gene59462.t1 |
| chr5.4 | CDS | 13585578 | 13585961 | 13585578 | ID=cds.MS.gene59462.t1;Parent=MS.gene59462.t1 |
| Gene Sequence |
| Protein sequence |
