Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59526.t1 | PNX75333.1 | 98.7 | 303 | 4 | 0 | 47 | 349 | 1 | 303 | 1.50E-175 | 625.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59526.t1 | Q9SZL8 | 39.0 | 341 | 191 | 5 | 24 | 349 | 54 | 392 | 4.3e-67 | 256.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59526.t1 | A0A2K3L9Y4 | 98.7 | 303 | 4 | 0 | 47 | 349 | 1 | 303 | 1.1e-175 | 625.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59526.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59526.t1 | MTR_1g019850 | 94.737 | 171 | 9 | 0 | 1 | 171 | 28 | 198 | 5.66e-115 | 333 |
| MS.gene59526.t1 | MTR_0853s0010 | 56.774 | 155 | 52 | 2 | 30 | 169 | 4 | 158 | 4.33e-53 | 173 |
| MS.gene59526.t1 | MTR_2g024230 | 79.000 | 100 | 20 | 1 | 1 | 99 | 47 | 146 | 6.63e-48 | 159 |
| MS.gene59526.t1 | MTR_6g051425 | 32.941 | 255 | 156 | 5 | 58 | 300 | 38 | 289 | 7.59e-40 | 144 |
| MS.gene59526.t1 | MTR_4g035820 | 26.087 | 299 | 193 | 8 | 6 | 277 | 27 | 324 | 7.55e-25 | 106 |
| MS.gene59526.t1 | MTR_0558s0020 | 25.292 | 257 | 162 | 4 | 47 | 273 | 40 | 296 | 6.97e-23 | 97.4 |
| MS.gene59526.t1 | MTR_3g450850 | 28.819 | 288 | 168 | 11 | 3 | 261 | 7 | 286 | 2.57e-21 | 94.0 |
| MS.gene59526.t1 | MTR_8g446020 | 28.090 | 178 | 123 | 2 | 101 | 273 | 79 | 256 | 9.15e-20 | 87.8 |
| MS.gene59526.t1 | MTR_1g070355 | 25.322 | 233 | 159 | 5 | 48 | 267 | 79 | 309 | 9.54e-19 | 87.8 |
| MS.gene59526.t1 | MTR_5g076070 | 27.059 | 255 | 165 | 8 | 21 | 261 | 35 | 282 | 7.07e-18 | 83.2 |
| MS.gene59526.t1 | MTR_6g090505 | 25.773 | 194 | 139 | 2 | 101 | 289 | 54 | 247 | 5.62e-17 | 81.6 |
| MS.gene59526.t1 | MTR_7g446480 | 28.409 | 176 | 119 | 3 | 112 | 281 | 140 | 314 | 5.35e-16 | 78.2 |
| MS.gene59526.t1 | MTR_1g033820 | 50.704 | 71 | 29 | 1 | 23 | 87 | 1 | 71 | 6.67e-16 | 72.8 |
| MS.gene59526.t1 | MTR_7g446510 | 26.857 | 175 | 123 | 1 | 112 | 281 | 155 | 329 | 1.77e-15 | 77.0 |
| MS.gene59526.t1 | MTR_1g083640 | 22.344 | 273 | 181 | 6 | 6 | 248 | 15 | 286 | 5.37e-14 | 72.0 |
| MS.gene59526.t1 | MTR_1g013060 | 25.439 | 228 | 147 | 6 | 23 | 234 | 10 | 230 | 1.47e-13 | 69.7 |
| MS.gene59526.t1 | MTR_7g446520 | 25.000 | 244 | 154 | 8 | 44 | 275 | 89 | 315 | 4.14e-13 | 69.7 |
| MS.gene59526.t1 | MTR_6g048540 | 52.542 | 59 | 28 | 0 | 38 | 96 | 23 | 81 | 1.87e-12 | 66.6 |
| MS.gene59526.t1 | MTR_7g074790 | 30.058 | 173 | 85 | 6 | 43 | 201 | 10 | 160 | 6.90e-12 | 65.1 |
| MS.gene59526.t1 | MTR_5g039760 | 25.397 | 189 | 114 | 5 | 45 | 226 | 12 | 180 | 1.32e-11 | 63.2 |
| MS.gene59526.t1 | MTR_0402s0040 | 25.510 | 196 | 133 | 3 | 23 | 206 | 6 | 200 | 4.60e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59526.t1 | AT4G38180 | 39.286 | 336 | 187 | 5 | 29 | 349 | 59 | 392 | 9.06e-79 | 257 |
| MS.gene59526.t1 | AT2G27110 | 34.795 | 365 | 196 | 11 | 1 | 349 | 1 | 339 | 1.49e-58 | 203 |
| MS.gene59526.t1 | AT2G27110 | 34.795 | 365 | 196 | 11 | 1 | 349 | 1 | 339 | 1.49e-58 | 203 |
| MS.gene59526.t1 | AT3G22170 | 32.337 | 368 | 204 | 9 | 1 | 347 | 32 | 375 | 1.31e-55 | 195 |
| MS.gene59526.t1 | AT3G22170 | 32.337 | 368 | 204 | 9 | 1 | 347 | 32 | 375 | 1.31e-55 | 195 |
| MS.gene59526.t1 | AT4G15090 | 31.627 | 332 | 212 | 4 | 36 | 354 | 44 | 373 | 2.29e-54 | 191 |
| MS.gene59526.t1 | AT4G15090 | 31.627 | 332 | 212 | 4 | 36 | 354 | 44 | 373 | 2.29e-54 | 191 |
| MS.gene59526.t1 | AT4G15090 | 31.627 | 332 | 212 | 4 | 36 | 354 | 44 | 373 | 2.29e-54 | 191 |
| MS.gene59526.t1 | AT4G15090 | 31.627 | 332 | 212 | 4 | 36 | 354 | 44 | 373 | 2.29e-54 | 191 |
| MS.gene59526.t1 | AT4G15090 | 31.627 | 332 | 212 | 4 | 36 | 354 | 44 | 373 | 2.29e-54 | 191 |
| MS.gene59526.t1 | AT1G76320 | 36.039 | 308 | 185 | 5 | 47 | 347 | 1 | 303 | 4.92e-54 | 188 |
| MS.gene59526.t1 | AT1G76320 | 36.039 | 308 | 185 | 5 | 47 | 347 | 1 | 303 | 7.20e-54 | 189 |
| MS.gene59526.t1 | AT1G76320 | 36.039 | 308 | 185 | 5 | 47 | 347 | 1 | 303 | 7.35e-54 | 189 |
| MS.gene59526.t1 | AT1G76320 | 36.039 | 308 | 185 | 5 | 47 | 347 | 1 | 303 | 7.35e-54 | 189 |
| MS.gene59526.t1 | AT1G10240 | 29.577 | 355 | 228 | 7 | 20 | 354 | 23 | 375 | 4.28e-50 | 178 |
| MS.gene59526.t1 | AT1G10240 | 29.577 | 355 | 228 | 7 | 20 | 354 | 23 | 375 | 4.28e-50 | 178 |
| MS.gene59526.t1 | AT1G80010 | 33.537 | 328 | 185 | 8 | 43 | 347 | 95 | 412 | 8.22e-50 | 177 |
| MS.gene59526.t1 | AT3G06250 | 32.209 | 326 | 178 | 7 | 30 | 348 | 178 | 467 | 1.14e-49 | 177 |
| MS.gene59526.t1 | AT3G06250 | 32.209 | 326 | 178 | 7 | 30 | 348 | 178 | 467 | 1.14e-49 | 177 |
| MS.gene59526.t1 | AT3G06250 | 32.209 | 326 | 178 | 7 | 30 | 348 | 178 | 467 | 1.14e-49 | 177 |
| MS.gene59526.t1 | AT2G27110 | 50.694 | 144 | 71 | 0 | 206 | 349 | 51 | 194 | 3.70e-48 | 173 |
| MS.gene59526.t1 | AT5G18960 | 32.698 | 315 | 171 | 9 | 43 | 349 | 211 | 492 | 1.69e-47 | 172 |
| MS.gene59526.t1 | AT5G18960 | 32.698 | 315 | 171 | 9 | 43 | 349 | 211 | 492 | 1.69e-47 | 172 |
| MS.gene59526.t1 | AT1G52520 | 29.154 | 319 | 204 | 7 | 43 | 351 | 85 | 391 | 6.45e-45 | 164 |
| MS.gene59526.t1 | AT2G32250 | 31.519 | 349 | 185 | 9 | 14 | 347 | 1 | 310 | 8.48e-45 | 164 |
| MS.gene59526.t1 | AT2G32250 | 32.370 | 346 | 176 | 9 | 21 | 347 | 4 | 310 | 1.47e-44 | 164 |
| MS.gene59526.t1 | AT2G32250 | 32.370 | 346 | 176 | 9 | 21 | 347 | 4 | 310 | 1.47e-44 | 164 |
| MS.gene59526.t1 | AT2G32250 | 32.370 | 346 | 176 | 9 | 21 | 347 | 4 | 310 | 1.47e-44 | 164 |
| MS.gene59526.t1 | AT2G32250 | 32.370 | 346 | 176 | 9 | 21 | 347 | 4 | 310 | 1.55e-44 | 163 |
| MS.gene59526.t1 | AT2G32250 | 32.370 | 346 | 176 | 9 | 21 | 347 | 4 | 310 | 1.55e-44 | 163 |
| MS.gene59526.t1 | AT2G32250 | 33.117 | 308 | 160 | 7 | 47 | 347 | 1 | 269 | 1.69e-44 | 163 |
| MS.gene59526.t1 | AT2G32250 | 33.117 | 308 | 160 | 7 | 47 | 347 | 1 | 269 | 1.75e-44 | 163 |
| MS.gene59526.t1 | AT4G19990 | 31.464 | 321 | 163 | 6 | 48 | 345 | 40 | 326 | 8.77e-43 | 158 |
| MS.gene59526.t1 | AT4G19990 | 31.464 | 321 | 163 | 6 | 48 | 345 | 26 | 312 | 9.74e-43 | 158 |
| MS.gene59526.t1 | AT4G19990 | 31.464 | 321 | 163 | 6 | 48 | 345 | 26 | 312 | 9.89e-43 | 158 |
| MS.gene59526.t1 | AT4G19990 | 31.464 | 321 | 163 | 6 | 48 | 345 | 26 | 312 | 9.89e-43 | 158 |
| MS.gene59526.t1 | AT4G19990 | 31.464 | 321 | 163 | 6 | 48 | 345 | 26 | 312 | 1.29e-42 | 158 |
| MS.gene59526.t1 | AT4G19990 | 31.464 | 321 | 163 | 6 | 48 | 345 | 26 | 312 | 1.29e-42 | 158 |
| MS.gene59526.t1 | AT5G28530 | 27.901 | 362 | 233 | 9 | 21 | 354 | 29 | 390 | 2.82e-42 | 156 |
| MS.gene59526.t1 | AT5G28530 | 27.901 | 362 | 233 | 9 | 21 | 354 | 29 | 390 | 3.08e-42 | 156 |
| MS.gene59526.t1 | AT5G28530 | 27.901 | 362 | 233 | 9 | 21 | 354 | 29 | 390 | 3.08e-42 | 156 |
| MS.gene59526.t1 | AT4G19990 | 35.200 | 250 | 125 | 4 | 99 | 345 | 40 | 255 | 9.08e-40 | 149 |
| MS.gene59526.t1 | AT4G38170 | 45.775 | 142 | 72 | 2 | 202 | 342 | 13 | 150 | 6.97e-38 | 142 |
| MS.gene59526.t1 | AT5G28530 | 26.625 | 323 | 176 | 10 | 43 | 354 | 55 | 327 | 3.56e-24 | 104 |
| MS.gene59526.t1 | AT5G28530 | 26.625 | 323 | 176 | 10 | 43 | 354 | 55 | 327 | 4.42e-24 | 103 |
Find 62 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGTTGCTACAATGTTTC+AGG | 0.177913 | 8.4:+68954309 | MS.gene59526:CDS |
| AACTCCAAATCCTTCTTTCT+TGG | 0.222792 | 8.4:-68953981 | None:intergenic |
| TATTTGTCCTATTGTTGATA+TGG | 0.229024 | 8.4:+68953913 | MS.gene59526:CDS |
| CTCGTCACCGGTTATGTTTA+TGG | 0.247826 | 8.4:+68954806 | MS.gene59526:CDS |
| ATAGAATGATAAATTTCTTC+TGG | 0.268818 | 8.4:+68954494 | MS.gene59526:CDS |
| AAGCAGGGAAGAGAAGTAAA+TGG | 0.304863 | 8.4:+68954146 | MS.gene59526:CDS |
| CGCAGATAGGCCACACTCTT+AGG | 0.314469 | 8.4:-68954214 | None:intergenic |
| TTTGCCAAGAAAGAAGGATT+TGG | 0.365412 | 8.4:+68953977 | MS.gene59526:CDS |
| TTCTTCTGAAATTTCTAAGA+TGG | 0.394077 | 8.4:-68954369 | None:intergenic |
| AAATGGCATATCATACTTGT+TGG | 0.423697 | 8.4:-68954587 | None:intergenic |
| TCAAATTCCATATCAACAAT+AGG | 0.427064 | 8.4:-68953920 | None:intergenic |
| TAGAATGATAAATTTCTTCT+GGG | 0.433286 | 8.4:+68954495 | MS.gene59526:CDS |
| GGTGGATGGAAGAGCAAGAT+TGG | 0.436268 | 8.4:+68954516 | MS.gene59526:CDS |
| GAAGGTACACATATAGTAAA+GGG | 0.439216 | 8.4:+68954052 | MS.gene59526:CDS |
| TTATGTGCCATAAACATAAC+CGG | 0.445245 | 8.4:-68954813 | None:intergenic |
| TCACTTACTGTTTCAAAAGC+AGG | 0.452498 | 8.4:+68954130 | MS.gene59526:CDS |
| ATAAATTTCTTCTGGGTGGA+TGG | 0.455401 | 8.4:+68954502 | MS.gene59526:CDS |
| ATAAACAATGTTCATAATCA+TGG | 0.455589 | 8.4:+68954181 | MS.gene59526:CDS |
| ACATCGTTTGCCAAGAAAGA+AGG | 0.463881 | 8.4:+68953971 | MS.gene59526:CDS |
| ATAGGACAAATATTAGCTTC+AGG | 0.470032 | 8.4:-68953902 | None:intergenic |
| GTTGAGAAGTTTGATGAAGA+AGG | 0.472036 | 8.4:+68954274 | MS.gene59526:CDS |
| ATGCCATTTGCACCCTTCAC+CGG | 0.480130 | 8.4:+68954601 | MS.gene59526:CDS |
| AAGGATTTGGAGTTCGTGTT+CGG | 0.488165 | 8.4:+68953990 | MS.gene59526:CDS |
| AGCAGGGAAGAGAAGTAAAT+GGG | 0.489503 | 8.4:+68954147 | MS.gene59526:CDS |
| AGTCCGGTGAAGGGTGCAAA+TGG | 0.489744 | 8.4:-68954604 | None:intergenic |
| CATAACCGGTGACGAGTATG+TGG | 0.490741 | 8.4:-68954799 | None:intergenic |
| TGAAGGTACACATATAGTAA+AGG | 0.494494 | 8.4:+68954051 | MS.gene59526:CDS |
| AATATTAGCTTCAGGCGACT+TGG | 0.496239 | 8.4:-68953894 | None:intergenic |
| GATGAAGAAGGAGTACCTAC+AGG | 0.503271 | 8.4:+68954286 | MS.gene59526:CDS |
| GTAAAGGGTGAAAATGAAGA+AGG | 0.507431 | 8.4:+68954067 | MS.gene59526:CDS |
| TTTCTTATGAGACCGCAGAT+AGG | 0.520274 | 8.4:-68954227 | None:intergenic |
| TGATCTGTTATTATTGACAC+TGG | 0.529855 | 8.4:-68954739 | None:intergenic |
| AAAGTTGCTACAATGTTTCA+GGG | 0.533512 | 8.4:+68954310 | MS.gene59526:CDS |
| TGCTTTACAATCAGTTCTTG+AGG | 0.537334 | 8.4:-68954107 | None:intergenic |
| TAGAACATGGCTAGACGCAA+TGG | 0.540817 | 8.4:+68954705 | MS.gene59526:CDS |
| CACTTACTGTTTCAAAAGCA+GGG | 0.542698 | 8.4:+68954131 | MS.gene59526:CDS |
| ATGATGATTCAGTCCGGTGA+AGG | 0.542726 | 8.4:-68954614 | None:intergenic |
| AGAAGAAGAAATCTTGATGT+GGG | 0.546130 | 8.4:+68954385 | MS.gene59526:CDS |
| ATGTGGGAAAACATTGGCTA+TGG | 0.551030 | 8.4:-68954782 | None:intergenic |
| TAAAGGGTGAAAATGAAGAA+GGG | 0.554329 | 8.4:+68954068 | MS.gene59526:CDS |
| CAGAAGAAGAAATCTTGATG+TGG | 0.556138 | 8.4:+68954384 | MS.gene59526:CDS |
| CAATGTTCATAATCATGGAA+TGG | 0.563943 | 8.4:+68954186 | MS.gene59526:CDS |
| TTGAAAATGATGATTCAGTC+CGG | 0.564459 | 8.4:-68954620 | None:intergenic |
| AGAACATGGCTAGACGCAAT+GGG | 0.566082 | 8.4:+68954706 | MS.gene59526:CDS |
| ATTGTAGCAACTTTCCCTGT+AGG | 0.569258 | 8.4:-68954301 | None:intergenic |
| TTGAGTGGTTGTTTAGAACA+TGG | 0.580129 | 8.4:+68954692 | MS.gene59526:CDS |
| ACACATCATCAACTATCTCA+TGG | 0.582009 | 8.4:-68953841 | None:intergenic |
| AATGATAAATTTCTTCTGGG+TGG | 0.588712 | 8.4:+68954498 | MS.gene59526:CDS |
| ATGTTTGTATGTGCTAATGA+AGG | 0.592517 | 8.4:+68954034 | MS.gene59526:CDS |
| TGATGATTCAGTCCGGTGAA+GGG | 0.595576 | 8.4:-68954613 | None:intergenic |
| ACGAGTATGTGGGAAAACAT+TGG | 0.606382 | 8.4:-68954788 | None:intergenic |
| AGACTCAGAAGACGTTTGAG+TGG | 0.616471 | 8.4:+68954677 | MS.gene59526:CDS |
| AATAATAACAGATCAAGACT+TGG | 0.616986 | 8.4:+68954747 | MS.gene59526:CDS |
| ATGAAGAAGGAGTACCTACA+GGG | 0.636491 | 8.4:+68954287 | MS.gene59526:CDS |
| CTTCATCAAACTTCTCAACG+AGG | 0.637235 | 8.4:-68954270 | None:intergenic |
| CTAAGAGTGTGGCCTATCTG+CGG | 0.648365 | 8.4:+68954215 | MS.gene59526:CDS |
| GTACATGGATAATGAGTGTG+TGG | 0.666454 | 8.4:+68953790 | None:intergenic |
| AATGGTTAGTCCTAAGAGTG+TGG | 0.677899 | 8.4:+68954204 | MS.gene59526:CDS |
| GTCTTCTAAACACTCAACAG+TGG | 0.678815 | 8.4:-68953819 | None:intergenic |
| TATGGAATTTGACTCCATTG+CGG | 0.693460 | 8.4:+68953931 | MS.gene59526:CDS |
| ACATGGCTAGACGCAATGGG+TGG | 0.716265 | 8.4:+68954709 | MS.gene59526:CDS |
| ATAACCGGTGACGAGTATGT+GGG | 0.725095 | 8.4:-68954798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTGCATAAAAAAAATT+GGG | - | chr8.4:68954460-68954479 | None:intergenic | 15.0% |
| !! | TTGTATTGCATAAAAAAAAT+TGG | - | chr8.4:68954461-68954480 | None:intergenic | 15.0% |
| !! | ATAAACAATGTTCATAATCA+TGG | + | chr8.4:68954181-68954200 | MS.gene59526:CDS | 20.0% |
| !! | ATAGAATGATAAATTTCTTC+TGG | + | chr8.4:68954494-68954513 | MS.gene59526:CDS | 20.0% |
| !! | TAGAATGATAAATTTCTTCT+GGG | + | chr8.4:68954495-68954514 | MS.gene59526:CDS | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | + | chr8.4:68954634-68954653 | MS.gene59526:CDS | 20.0% |
| ! | AATAATAACAGATCAAGACT+TGG | + | chr8.4:68954747-68954766 | MS.gene59526:CDS | 25.0% |
| ! | TATTTGTCCTATTGTTGATA+TGG | + | chr8.4:68953913-68953932 | MS.gene59526:CDS | 25.0% |
| ! | TCAAATTCCATATCAACAAT+AGG | - | chr8.4:68953923-68953942 | None:intergenic | 25.0% |
| !!! | AAGATAATGCTTTTTCTAGT+CGG | + | chr8.4:68954335-68954354 | MS.gene59526:CDS | 25.0% |
| !!! | AGATTGGCATATCAATTTTT+TGG | + | chr8.4:68954532-68954551 | MS.gene59526:CDS | 25.0% |
| !!! | TTCTTCTGAAATTTCTAAGA+TGG | - | chr8.4:68954372-68954391 | None:intergenic | 25.0% |
| AAAGTTGCTACAATGTTTCA+GGG | + | chr8.4:68954310-68954329 | MS.gene59526:CDS | 30.0% | |
| AAATGGCATATCATACTTGT+TGG | - | chr8.4:68954590-68954609 | None:intergenic | 30.0% | |
| AATGATAAATTTCTTCTGGG+TGG | + | chr8.4:68954498-68954517 | MS.gene59526:CDS | 30.0% | |
| AGAAGAAGAAATCTTGATGT+GGG | + | chr8.4:68954385-68954404 | MS.gene59526:CDS | 30.0% | |
| ATGGCACATAAAAAAACCAT+TGG | + | chr8.4:68954825-68954844 | MS.gene59526:CDS | 30.0% | |
| ATGTTTGTATGTGCTAATGA+AGG | + | chr8.4:68954034-68954053 | MS.gene59526:CDS | 30.0% | |
| CAATGTTCATAATCATGGAA+TGG | + | chr8.4:68954186-68954205 | MS.gene59526:CDS | 30.0% | |
| TAAAAACAGTAAGACTCCAA+TGG | - | chr8.4:68954844-68954863 | None:intergenic | 30.0% | |
| TAAAGGGTGAAAATGAAGAA+GGG | + | chr8.4:68954068-68954087 | MS.gene59526:CDS | 30.0% | |
| TGATCTGTTATTATTGACAC+TGG | - | chr8.4:68954742-68954761 | None:intergenic | 30.0% | |
| TTATGTGCCATAAACATAAC+CGG | - | chr8.4:68954816-68954835 | None:intergenic | 30.0% | |
| TTGAAAATGATGATTCAGTC+CGG | - | chr8.4:68954623-68954642 | None:intergenic | 30.0% | |
| ! | ATAGGACAAATATTAGCTTC+AGG | - | chr8.4:68953905-68953924 | None:intergenic | 30.0% |
| ! | GAAGGTACACATATAGTAAA+GGG | + | chr8.4:68954052-68954071 | MS.gene59526:CDS | 30.0% |
| ! | GACTTGGAATTTTCTGAATT+TGG | - | chr8.4:68953881-68953900 | None:intergenic | 30.0% |
| ! | TGAAGGTACACATATAGTAA+AGG | + | chr8.4:68954051-68954070 | MS.gene59526:CDS | 30.0% |
| !!! | AGATAATGCTTTTTCTAGTC+GGG | + | chr8.4:68954336-68954355 | MS.gene59526:CDS | 30.0% |
| AACTCCAAATCCTTCTTTCT+TGG | - | chr8.4:68953984-68954003 | None:intergenic | 35.0% | |
| ACACATCATCAACTATCTCA+TGG | - | chr8.4:68953844-68953863 | None:intergenic | 35.0% | |
| ATAAATTTCTTCTGGGTGGA+TGG | + | chr8.4:68954502-68954521 | MS.gene59526:CDS | 35.0% | |
| CACTTACTGTTTCAAAAGCA+GGG | + | chr8.4:68954131-68954150 | MS.gene59526:CDS | 35.0% | |
| CAGAAGAAGAAATCTTGATG+TGG | + | chr8.4:68954384-68954403 | MS.gene59526:CDS | 35.0% | |
| GAAAGTTGCTACAATGTTTC+AGG | + | chr8.4:68954309-68954328 | MS.gene59526:CDS | 35.0% | |
| GTAAAGGGTGAAAATGAAGA+AGG | + | chr8.4:68954067-68954086 | MS.gene59526:CDS | 35.0% | |
| GTTGAGAAGTTTGATGAAGA+AGG | + | chr8.4:68954274-68954293 | MS.gene59526:CDS | 35.0% | |
| TATGGAATTTGACTCCATTG+CGG | + | chr8.4:68953931-68953950 | MS.gene59526:CDS | 35.0% | |
| TCACTTACTGTTTCAAAAGC+AGG | + | chr8.4:68954130-68954149 | MS.gene59526:CDS | 35.0% | |
| TGCTTTACAATCAGTTCTTG+AGG | - | chr8.4:68954110-68954129 | None:intergenic | 35.0% | |
| TTTGCCAAGAAAGAAGGATT+TGG | + | chr8.4:68953977-68953996 | MS.gene59526:CDS | 35.0% | |
| ! | GAATTCTTTTACATCCGCAA+TGG | - | chr8.4:68953948-68953967 | None:intergenic | 35.0% |
| ! | TTGAGTGGTTGTTTAGAACA+TGG | + | chr8.4:68954692-68954711 | MS.gene59526:CDS | 35.0% |
| AAGCAGGGAAGAGAAGTAAA+TGG | + | chr8.4:68954146-68954165 | MS.gene59526:CDS | 40.0% | |
| ACATCGTTTGCCAAGAAAGA+AGG | + | chr8.4:68953971-68953990 | MS.gene59526:CDS | 40.0% | |
| ACGAGTATGTGGGAAAACAT+TGG | - | chr8.4:68954791-68954810 | None:intergenic | 40.0% | |
| AGCAGGGAAGAGAAGTAAAT+GGG | + | chr8.4:68954147-68954166 | MS.gene59526:CDS | 40.0% | |
| ATTGTAGCAACTTTCCCTGT+AGG | - | chr8.4:68954304-68954323 | None:intergenic | 40.0% | |
| CTTCATCAAACTTCTCAACG+AGG | - | chr8.4:68954273-68954292 | None:intergenic | 40.0% | |
| GTCTTCTAAACACTCAACAG+TGG | - | chr8.4:68953822-68953841 | None:intergenic | 40.0% | |
| TTTCTTATGAGACCGCAGAT+AGG | - | chr8.4:68954230-68954249 | None:intergenic | 40.0% | |
| ! | AAGGATTTGGAGTTCGTGTT+CGG | + | chr8.4:68953990-68954009 | MS.gene59526:CDS | 40.0% |
| ! | AATATTAGCTTCAGGCGACT+TGG | - | chr8.4:68953897-68953916 | None:intergenic | 40.0% |
| ! | AATGGTTAGTCCTAAGAGTG+TGG | + | chr8.4:68954204-68954223 | MS.gene59526:CDS | 40.0% |
| ! | ATGTGGGAAAACATTGGCTA+TGG | - | chr8.4:68954785-68954804 | None:intergenic | 40.0% |
| !! | ATGAAGAAGGAGTACCTACA+GGG | + | chr8.4:68954287-68954306 | MS.gene59526:CDS | 40.0% |
| AGAACATGGCTAGACGCAAT+GGG | + | chr8.4:68954706-68954725 | MS.gene59526:CDS | 45.0% | |
| AGACTCAGAAGACGTTTGAG+TGG | + | chr8.4:68954677-68954696 | MS.gene59526:CDS | 45.0% | |
| ATAACCGGTGACGAGTATGT+GGG | - | chr8.4:68954801-68954820 | None:intergenic | 45.0% | |
| ATGATGATTCAGTCCGGTGA+AGG | - | chr8.4:68954617-68954636 | None:intergenic | 45.0% | |
| TAGAACATGGCTAGACGCAA+TGG | + | chr8.4:68954705-68954724 | MS.gene59526:CDS | 45.0% | |
| TGATGATTCAGTCCGGTGAA+GGG | - | chr8.4:68954616-68954635 | None:intergenic | 45.0% | |
| ! | CTCGTCACCGGTTATGTTTA+TGG | + | chr8.4:68954806-68954825 | MS.gene59526:CDS | 45.0% |
| ! | TTTTCCCACATACTCGTCAC+CGG | + | chr8.4:68954794-68954813 | MS.gene59526:CDS | 45.0% |
| !! | CTTTTTCTAGTCGGGATTGC+TGG | + | chr8.4:68954344-68954363 | MS.gene59526:CDS | 45.0% |
| !! | GATGAAGAAGGAGTACCTAC+AGG | + | chr8.4:68954286-68954305 | MS.gene59526:CDS | 45.0% |
| CATAACCGGTGACGAGTATG+TGG | - | chr8.4:68954802-68954821 | None:intergenic | 50.0% | |
| GGTGGATGGAAGAGCAAGAT+TGG | + | chr8.4:68954516-68954535 | MS.gene59526:CDS | 50.0% | |
| ! | ATGCCATTTGCACCCTTCAC+CGG | + | chr8.4:68954601-68954620 | MS.gene59526:CDS | 50.0% |
| ! | CTAAGAGTGTGGCCTATCTG+CGG | + | chr8.4:68954215-68954234 | MS.gene59526:CDS | 50.0% |
| ACATGGCTAGACGCAATGGG+TGG | + | chr8.4:68954709-68954728 | MS.gene59526:CDS | 55.0% | |
| CGCAGATAGGCCACACTCTT+AGG | - | chr8.4:68954217-68954236 | None:intergenic | 55.0% | |
| ! | AGTCCGGTGAAGGGTGCAAA+TGG | - | chr8.4:68954607-68954626 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68953794 | 68954864 | 68953794 | ID=MS.gene59526 |
| chr8.4 | mRNA | 68953794 | 68954864 | 68953794 | ID=MS.gene59526.t1;Parent=MS.gene59526 |
| chr8.4 | exon | 68953794 | 68954864 | 68953794 | ID=MS.gene59526.t1.exon1;Parent=MS.gene59526.t1 |
| chr8.4 | CDS | 68953794 | 68954864 | 68953794 | ID=cds.MS.gene59526.t1;Parent=MS.gene59526.t1 |
| Gene Sequence |
| Protein sequence |
