Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59651.t1 | XP_024641056.1 | 89.6 | 270 | 20 | 1 | 1 | 270 | 1 | 262 | 1.00E-141 | 512.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59651.t1 | Q9FX68 | 70.3 | 249 | 52 | 5 | 20 | 263 | 12 | 243 | 6.7e-97 | 355.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59651.t1 | A0A396HR52 | 89.6 | 270 | 20 | 1 | 1 | 270 | 1 | 262 | 7.5e-142 | 512.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59651.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59651.t1 | MTR_1g093095 | 69.758 | 248 | 63 | 3 | 20 | 265 | 23 | 260 | 6.56e-117 | 337 |
| MS.gene59651.t1 | MTR_4g059870 | 32.673 | 202 | 125 | 6 | 58 | 257 | 2 | 194 | 4.53e-23 | 98.2 |
| MS.gene59651.t1 | MTR_1g016010 | 35.429 | 175 | 99 | 7 | 85 | 256 | 33 | 196 | 4.21e-22 | 95.1 |
| MS.gene59651.t1 | MTR_1g094115 | 38.095 | 147 | 78 | 6 | 119 | 263 | 56 | 191 | 9.24e-22 | 94.7 |
| MS.gene59651.t1 | MTR_1g094115 | 36.842 | 152 | 83 | 6 | 114 | 263 | 68 | 208 | 1.58e-21 | 94.0 |
| MS.gene59651.t1 | MTR_8g017210 | 34.868 | 152 | 86 | 5 | 116 | 265 | 85 | 225 | 1.75e-21 | 94.0 |
| MS.gene59651.t1 | MTR_2g099990 | 35.443 | 158 | 88 | 6 | 104 | 259 | 58 | 203 | 5.54e-21 | 92.0 |
| MS.gene59651.t1 | MTR_2g093960 | 38.571 | 140 | 76 | 4 | 116 | 254 | 55 | 185 | 8.88e-21 | 91.3 |
| MS.gene59651.t1 | MTR_1g112270 | 35.374 | 147 | 84 | 4 | 114 | 259 | 65 | 201 | 1.43e-20 | 91.3 |
| MS.gene59651.t1 | MTR_1g112270 | 33.140 | 172 | 103 | 5 | 89 | 259 | 52 | 212 | 1.52e-20 | 91.3 |
| MS.gene59651.t1 | MTR_2g099990 | 37.241 | 145 | 78 | 6 | 117 | 259 | 1 | 134 | 4.06e-20 | 89.4 |
| MS.gene59651.t1 | MTR_2g090745 | 36.943 | 157 | 86 | 7 | 109 | 263 | 23 | 168 | 5.02e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59651.t1 | AT1G13290 | 70.281 | 249 | 52 | 5 | 20 | 263 | 12 | 243 | 1.32e-119 | 344 |
| MS.gene59651.t1 | AT3G57670 | 78.443 | 167 | 35 | 1 | 104 | 270 | 199 | 364 | 1.50e-101 | 301 |
| MS.gene59651.t1 | AT1G51220 | 53.608 | 291 | 99 | 8 | 7 | 265 | 34 | 320 | 8.46e-101 | 298 |
| MS.gene59651.t1 | AT3G20880 | 81.169 | 154 | 28 | 1 | 107 | 260 | 241 | 393 | 3.51e-97 | 291 |
| MS.gene59651.t1 | AT1G08290 | 76.282 | 156 | 37 | 0 | 106 | 261 | 164 | 319 | 9.25e-96 | 285 |
| MS.gene59651.t1 | AT1G34790 | 63.333 | 210 | 64 | 3 | 72 | 269 | 83 | 291 | 3.76e-92 | 275 |
| MS.gene59651.t1 | AT1G34370 | 38.728 | 173 | 86 | 6 | 104 | 260 | 9 | 177 | 5.58e-27 | 106 |
| MS.gene59651.t1 | AT1G34370 | 40.909 | 154 | 78 | 5 | 116 | 260 | 238 | 387 | 2.08e-26 | 107 |
| MS.gene59651.t1 | AT1G34370 | 40.909 | 154 | 78 | 5 | 116 | 260 | 238 | 387 | 2.08e-26 | 107 |
| MS.gene59651.t1 | AT5G22890 | 39.785 | 186 | 94 | 11 | 87 | 260 | 181 | 360 | 6.40e-25 | 102 |
| MS.gene59651.t1 | AT5G66730 | 32.673 | 202 | 121 | 6 | 67 | 264 | 4 | 194 | 1.65e-23 | 99.8 |
| MS.gene59651.t1 | AT3G50700 | 33.005 | 203 | 121 | 6 | 67 | 265 | 6 | 197 | 1.93e-22 | 96.3 |
| MS.gene59651.t1 | AT1G55110 | 37.013 | 154 | 85 | 5 | 114 | 265 | 84 | 227 | 2.65e-22 | 95.9 |
| MS.gene59651.t1 | AT1G55110 | 37.013 | 154 | 85 | 5 | 114 | 265 | 84 | 227 | 2.65e-22 | 95.9 |
| MS.gene59651.t1 | AT1G55110 | 37.013 | 154 | 85 | 5 | 114 | 265 | 84 | 227 | 2.65e-22 | 95.9 |
| MS.gene59651.t1 | AT5G03150 | 37.063 | 143 | 80 | 4 | 116 | 257 | 76 | 209 | 6.87e-22 | 95.1 |
| MS.gene59651.t1 | AT5G44160 | 33.523 | 176 | 106 | 4 | 90 | 264 | 34 | 199 | 1.30e-21 | 94.0 |
| MS.gene59651.t1 | AT2G02070 | 37.255 | 153 | 83 | 5 | 114 | 264 | 73 | 214 | 1.46e-21 | 94.4 |
| MS.gene59651.t1 | AT2G02070 | 37.255 | 153 | 83 | 5 | 114 | 264 | 73 | 214 | 1.46e-21 | 94.4 |
| MS.gene59651.t1 | AT2G02080 | 37.013 | 154 | 84 | 5 | 114 | 265 | 75 | 217 | 1.64e-21 | 94.0 |
| MS.gene59651.t1 | AT2G02080 | 37.013 | 154 | 84 | 5 | 114 | 265 | 75 | 217 | 1.64e-21 | 94.0 |
| MS.gene59651.t1 | AT2G02080 | 37.013 | 154 | 84 | 5 | 114 | 265 | 75 | 217 | 1.64e-21 | 94.0 |
| MS.gene59651.t1 | AT2G02080 | 37.013 | 154 | 84 | 5 | 114 | 265 | 75 | 217 | 1.64e-21 | 94.0 |
| MS.gene59651.t1 | AT1G03840 | 33.714 | 175 | 105 | 5 | 90 | 263 | 38 | 202 | 2.48e-21 | 93.6 |
| MS.gene59651.t1 | AT5G44160 | 36.000 | 150 | 85 | 4 | 116 | 264 | 21 | 160 | 4.36e-21 | 92.4 |
| MS.gene59651.t1 | AT1G03840 | 34.286 | 175 | 102 | 7 | 90 | 263 | 38 | 200 | 4.97e-21 | 92.4 |
| MS.gene59651.t1 | AT2G02080 | 37.086 | 151 | 82 | 5 | 117 | 265 | 1 | 140 | 6.96e-21 | 91.7 |
| MS.gene59651.t1 | AT2G02080 | 37.086 | 151 | 82 | 5 | 117 | 265 | 1 | 140 | 6.96e-21 | 91.7 |
| MS.gene59651.t1 | AT1G14580 | 36.986 | 146 | 79 | 5 | 114 | 257 | 74 | 208 | 2.08e-20 | 90.5 |
| MS.gene59651.t1 | AT1G14580 | 36.986 | 146 | 79 | 5 | 114 | 257 | 74 | 208 | 2.08e-20 | 90.5 |
| MS.gene59651.t1 | AT1G14580 | 36.986 | 146 | 79 | 5 | 114 | 257 | 88 | 222 | 2.43e-20 | 90.5 |
| MS.gene59651.t1 | AT3G45260 | 35.570 | 149 | 86 | 4 | 116 | 263 | 62 | 201 | 3.23e-20 | 90.1 |
| MS.gene59651.t1 | AT3G45260 | 35.570 | 149 | 86 | 4 | 116 | 263 | 62 | 201 | 3.23e-20 | 90.1 |
| MS.gene59651.t1 | AT5G60470 | 36.486 | 148 | 84 | 5 | 116 | 262 | 58 | 196 | 3.52e-20 | 89.7 |
| MS.gene59651.t1 | AT5G60470 | 34.118 | 170 | 102 | 5 | 88 | 256 | 39 | 199 | 4.07e-20 | 89.7 |
| MS.gene59651.t1 | AT5G60470 | 34.118 | 170 | 102 | 5 | 88 | 256 | 35 | 195 | 4.53e-20 | 89.7 |
| MS.gene59651.t1 | AT3G13810 | 35.099 | 151 | 88 | 4 | 114 | 263 | 91 | 232 | 6.75e-20 | 89.4 |
| MS.gene59651.t1 | AT3G13810 | 35.099 | 151 | 88 | 4 | 114 | 263 | 91 | 232 | 6.75e-20 | 89.4 |
| MS.gene59651.t1 | AT3G13810 | 34.615 | 156 | 92 | 4 | 109 | 263 | 87 | 233 | 7.16e-20 | 89.4 |
| MS.gene59651.t1 | AT3G13810 | 34.615 | 156 | 92 | 4 | 109 | 263 | 73 | 219 | 7.34e-20 | 89.0 |
| MS.gene59651.t1 | AT3G13810 | 35.099 | 151 | 88 | 4 | 114 | 263 | 72 | 213 | 7.44e-20 | 89.0 |
| MS.gene59651.t1 | AT3G13810 | 35.099 | 151 | 88 | 4 | 114 | 263 | 86 | 227 | 7.55e-20 | 89.0 |
| MS.gene59651.t1 | AT4G02670 | 33.333 | 156 | 94 | 4 | 109 | 263 | 69 | 215 | 6.13e-19 | 85.9 |
| MS.gene59651.t1 | AT4G02670 | 33.333 | 156 | 94 | 4 | 109 | 263 | 71 | 217 | 6.26e-19 | 85.9 |
| MS.gene59651.t1 | AT1G25250 | 30.216 | 139 | 88 | 4 | 114 | 250 | 31 | 162 | 7.59e-12 | 65.1 |
| MS.gene59651.t1 | AT1G25250 | 30.714 | 140 | 86 | 5 | 114 | 250 | 54 | 185 | 7.78e-12 | 65.1 |
Find 58 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACTCCCCTTAGAGATTC+TGG | 0.179929 | 5.4:+42711350 | None:intergenic |
| CTCCAATTCAAGGTCAATAT+TGG | 0.256476 | 5.4:-42712111 | MS.gene59651:CDS |
| AAAGATCATGTTCGTGCTTT+CGG | 0.314009 | 5.4:-42711062 | MS.gene59651:CDS |
| GAAAAGGACCAGAATCTCTA+AGG | 0.322420 | 5.4:-42711358 | MS.gene59651:CDS |
| ATCCAATATTGACCTTGAAT+TGG | 0.345108 | 5.4:+42712109 | None:intergenic |
| TGATGATCAGGTTTGCTAAT+AGG | 0.347021 | 5.4:+42712145 | None:intergenic |
| TCACTCTCACTTGGCCCTCC+TGG | 0.348650 | 5.4:-42712340 | MS.gene59651:CDS |
| TTTAATGTGGAGGATAGTTT+AGG | 0.370427 | 5.4:+42712304 | None:intergenic |
| TAGCAAACCTGATCATCATT+TGG | 0.373747 | 5.4:-42712140 | MS.gene59651:CDS |
| AGCATGGAGCAAAGCCATTC+GGG | 0.401651 | 5.4:-42711202 | MS.gene59651:CDS |
| GGGAAACCATTTGCAGTTAG+AGG | 0.410419 | 5.4:-42711167 | MS.gene59651:CDS |
| TTGGCTTCAGCTCCAATTCA+AGG | 0.439186 | 5.4:-42712121 | MS.gene59651:CDS |
| CATGTTCGTGCTTTCGGTGA+TGG | 0.445219 | 5.4:-42711056 | MS.gene59651:CDS |
| GTCATTATTAGTTTCAATTG+AGG | 0.447268 | 5.4:+42712384 | None:intergenic |
| AAGCATGGAGCAAAGCCATT+CGG | 0.449148 | 5.4:-42711203 | MS.gene59651:CDS |
| AGTTTCAATTGAGGATATGT+AGG | 0.450025 | 5.4:+42712393 | None:intergenic |
| CCTTGCTATTGCTGTGCAGA+GGG | 0.458350 | 5.4:-42711302 | MS.gene59651:CDS |
| ACCACTTTGCTCATCATCAA+TGG | 0.458380 | 5.4:+42712222 | None:intergenic |
| CGTCGAGAGTTGTGAAGATC+AGG | 0.460359 | 5.4:-42711018 | MS.gene59651:CDS |
| TCACCTGCTCAAATCCTCAT+TGG | 0.461696 | 5.4:-42712082 | MS.gene59651:CDS |
| CAACCGTTTCAATAATATGC+AGG | 0.466033 | 5.4:-42712020 | MS.gene59651:intron |
| CAGTCACCTCTAACTGCAAA+TGG | 0.466119 | 5.4:+42711161 | None:intergenic |
| AGTAGAAGAGTGATTTAATG+TGG | 0.470478 | 5.4:+42712291 | None:intergenic |
| TCTTCCATTTCACTCTCACT+TGG | 0.472544 | 5.4:-42712349 | MS.gene59651:CDS |
| GCTGAAGCCAAATGATGATC+AGG | 0.472827 | 5.4:+42712133 | None:intergenic |
| TAACCTGCATATTATTGAAA+CGG | 0.475929 | 5.4:+42712017 | None:intergenic |
| AGTCTTAACATTGATGAAGC+TGG | 0.481814 | 5.4:+42711326 | None:intergenic |
| TCCTTGAGTGGTCTTGACCT+TGG | 0.482145 | 5.4:+42711257 | None:intergenic |
| AGGGCCAAGTGAGAGTGAAA+TGG | 0.483147 | 5.4:+42712345 | None:intergenic |
| GTATATATCAGATGCATATG+TGG | 0.492007 | 5.4:-42711400 | MS.gene59651:intron |
| TCCTTGCTATTGCTGTGCAG+AGG | 0.502744 | 5.4:-42711303 | MS.gene59651:CDS |
| TATATATCAGATGCATATGT+GGG | 0.512415 | 5.4:-42711399 | MS.gene59651:intron |
| CAGATGCATATGTGGGGACA+TGG | 0.520986 | 5.4:-42711392 | MS.gene59651:CDS |
| CATGGATCACAATACAGAAA+AGG | 0.532079 | 5.4:-42711374 | MS.gene59651:CDS |
| TCCAAGGTCAAGACCACTCA+AGG | 0.543238 | 5.4:-42711258 | MS.gene59651:CDS |
| CACTTCAAACACACTACAAG+AGG | 0.550716 | 5.4:-42711226 | MS.gene59651:CDS |
| TCACAACTCTCGACGGTGTG+TGG | 0.553384 | 5.4:+42711026 | None:intergenic |
| AAAAGGACCAGAATCTCTAA+GGG | 0.555739 | 5.4:-42711357 | MS.gene59651:CDS |
| CATTTGCAGTTAGAGGTGAC+TGG | 0.568578 | 5.4:-42711160 | MS.gene59651:CDS |
| GGAGAATGTGTGAGCTTGCA+TGG | 0.580463 | 5.4:+42712414 | None:intergenic |
| CCCTCTGCACAGCAATAGCA+AGG | 0.585163 | 5.4:+42711302 | None:intergenic |
| ATGAGGATTTGAGCAGGTGA+AGG | 0.587509 | 5.4:+42712085 | None:intergenic |
| ACACACTACAAGAGGAAGCA+TGG | 0.591744 | 5.4:-42711218 | MS.gene59651:CDS |
| AGAACAACATAGAGCATCCA+AGG | 0.593445 | 5.4:-42711274 | MS.gene59651:CDS |
| CCACACTTTCTACACCCGAA+TGG | 0.593700 | 5.4:+42711188 | None:intergenic |
| CCATTCGGGTGTAGAAAGTG+TGG | 0.603595 | 5.4:-42711188 | MS.gene59651:CDS |
| CTGATCTTCACAACTCTCGA+CGG | 0.614391 | 5.4:+42711019 | None:intergenic |
| ACAGTGCAAGAGAACTGTGT+TGG | 0.625514 | 5.4:+42712058 | None:intergenic |
| AGAAGAGTGATTTAATGTGG+AGG | 0.629008 | 5.4:+42712294 | None:intergenic |
| GGTCCAATGAGGATTTGAGC+AGG | 0.629341 | 5.4:+42712079 | None:intergenic |
| AGTGTTCTGAAATCCTTGAG+TGG | 0.638667 | 5.4:+42711245 | None:intergenic |
| AGAACTGTGTTGGTCCAATG+AGG | 0.645090 | 5.4:+42712068 | None:intergenic |
| GTAACAGTTGCACTTCACAT+TGG | 0.647512 | 5.4:-42712199 | MS.gene59651:CDS |
| CATTCGGGTGTAGAAAGTGT+GGG | 0.658306 | 5.4:-42711187 | MS.gene59651:CDS |
| CTTGCTATTGCTGTGCAGAG+GGG | 0.663614 | 5.4:-42711301 | MS.gene59651:CDS |
| ACCATTGATGATGAGCAAAG+TGG | 0.669448 | 5.4:-42712223 | MS.gene59651:CDS |
| ATATATCAGATGCATATGTG+GGG | 0.720271 | 5.4:-42711398 | MS.gene59651:intron |
| AAAGGACCAGAATCTCTAAG+GGG | 0.721082 | 5.4:-42711356 | MS.gene59651:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAAACAAATATTAG+TGG | - | chr5.4:42711705-42711724 | MS.gene59651:intron | 10.0% |
| !! | AAAAAAAAAAAGTTTACTTG+AGG | + | chr5.4:42711565-42711584 | None:intergenic | 15.0% |
| !!! | ATTGTTCATTTTTATCTTCT+AGG | + | chr5.4:42711866-42711885 | None:intergenic | 20.0% |
| ! | TAACCTGCATATTATTGAAA+CGG | + | chr5.4:42711414-42711433 | None:intergenic | 25.0% |
| ! | TATATATCAGATGCATATGT+GGG | - | chr5.4:42712029-42712048 | MS.gene59651:CDS | 25.0% |
| !! | AAATGACAAAATTTTGTGCT+TGG | + | chr5.4:42711961-42711980 | None:intergenic | 25.0% |
| !! | GTCATTATTAGTTTCAATTG+AGG | + | chr5.4:42711047-42711066 | None:intergenic | 25.0% |
| AACGATTCAAGATGGTATTA+AGG | + | chr5.4:42711674-42711693 | None:intergenic | 30.0% | |
| AGAAAAATTGTGGAAAGCTT+TGG | - | chr5.4:42712301-42712320 | MS.gene59651:CDS | 30.0% | |
| AGAACACATGAGAAAAATTG+TGG | - | chr5.4:42712291-42712310 | MS.gene59651:CDS | 30.0% | |
| AGTAGAAGAGTGATTTAATG+TGG | + | chr5.4:42711140-42711159 | None:intergenic | 30.0% | |
| AGTTTCAATTGAGGATATGT+AGG | + | chr5.4:42711038-42711057 | None:intergenic | 30.0% | |
| ATATATCAGATGCATATGTG+GGG | - | chr5.4:42712030-42712049 | MS.gene59651:CDS | 30.0% | |
| ATCCAATATTGACCTTGAAT+TGG | + | chr5.4:42711322-42711341 | None:intergenic | 30.0% | |
| ATGTCCTAATGCATACTATA+TGG | - | chr5.4:42711806-42711825 | MS.gene59651:intron | 30.0% | |
| GTATATATCAGATGCATATG+TGG | - | chr5.4:42712028-42712047 | MS.gene59651:CDS | 30.0% | |
| TCTTCCATATAGTATGCATT+AGG | + | chr5.4:42711813-42711832 | None:intergenic | 30.0% | |
| TTTAATGTGGAGGATAGTTT+AGG | + | chr5.4:42711127-42711146 | None:intergenic | 30.0% | |
| ! | AAAGTGTTAACGATTCAAGA+TGG | + | chr5.4:42711682-42711701 | None:intergenic | 30.0% |
| ! | GTGTTTTGTGAAATGTTTGT+TGG | + | chr5.4:42711259-42711278 | None:intergenic | 30.0% |
| !! | CTAGTTCTTGACAACTTTTA+TGG | + | chr5.4:42711746-42711765 | None:intergenic | 30.0% |
| !! | TGGTAAAGTTTTGCTTTTGA+AGG | + | chr5.4:42711189-42711208 | None:intergenic | 30.0% |
| !!! | AGGAGTATTGACAAATTTTC+TGG | + | chr5.4:42711783-42711802 | None:intergenic | 30.0% |
| AAAAGGACCAGAATCTCTAA+GGG | - | chr5.4:42712071-42712090 | MS.gene59651:CDS | 35.0% | |
| AAAGATCATGTTCGTGCTTT+CGG | - | chr5.4:42712366-42712385 | MS.gene59651:CDS | 35.0% | |
| AGAAGAGTGATTTAATGTGG+AGG | + | chr5.4:42711137-42711156 | None:intergenic | 35.0% | |
| AGTATGCATTAGGACATTGA+AGG | + | chr5.4:42711803-42711822 | None:intergenic | 35.0% | |
| AGTCTTAACATTGATGAAGC+TGG | + | chr5.4:42712105-42712124 | None:intergenic | 35.0% | |
| CAACCGTTTCAATAATATGC+AGG | - | chr5.4:42711408-42711427 | MS.gene59651:intron | 35.0% | |
| CATGGATCACAATACAGAAA+AGG | - | chr5.4:42712054-42712073 | MS.gene59651:CDS | 35.0% | |
| CTCCAATTCAAGGTCAATAT+TGG | - | chr5.4:42711317-42711336 | MS.gene59651:CDS | 35.0% | |
| TAGCAAACCTGATCATCATT+TGG | - | chr5.4:42711288-42711307 | MS.gene59651:CDS | 35.0% | |
| TGTATCTTGAACTACTAGCT+AGG | + | chr5.4:42711491-42711510 | None:intergenic | 35.0% | |
| !! | TGATGATCAGGTTTGCTAAT+AGG | + | chr5.4:42711286-42711305 | None:intergenic | 35.0% |
| !! | TGGAGGATAGTTTAGGTTTT+TGG | + | chr5.4:42711120-42711139 | None:intergenic | 35.0% |
| !!! | AAGCTTTGGTTTTGTATCTG+TGG | - | chr5.4:42712315-42712334 | MS.gene59651:CDS | 35.0% |
| AAAGGACCAGAATCTCTAAG+GGG | - | chr5.4:42712072-42712091 | MS.gene59651:CDS | 40.0% | |
| ACCACTTTGCTCATCATCAA+TGG | + | chr5.4:42711209-42711228 | None:intergenic | 40.0% | |
| AGCTAGGCAATAGACAGTTT+AGG | + | chr5.4:42711475-42711494 | None:intergenic | 40.0% | |
| CACTTCAAACACACTACAAG+AGG | - | chr5.4:42712202-42712221 | MS.gene59651:CDS | 40.0% | |
| GAAAAGGACCAGAATCTCTA+AGG | - | chr5.4:42712070-42712089 | MS.gene59651:CDS | 40.0% | |
| GTAACAGTTGCACTTCACAT+TGG | - | chr5.4:42711229-42711248 | MS.gene59651:CDS | 40.0% | |
| TCTTCCATTTCACTCTCACT+TGG | - | chr5.4:42711079-42711098 | MS.gene59651:CDS | 40.0% | |
| TTTACTCCCCTTAGAGATTC+TGG | + | chr5.4:42712081-42712100 | None:intergenic | 40.0% | |
| ! | AGAACAACATAGAGCATCCA+AGG | - | chr5.4:42712154-42712173 | MS.gene59651:CDS | 40.0% |
| !! | ACCATTGATGATGAGCAAAG+TGG | - | chr5.4:42711205-42711224 | MS.gene59651:CDS | 40.0% |
| !! | AGTGTTCTGAAATCCTTGAG+TGG | + | chr5.4:42712186-42712205 | None:intergenic | 40.0% |
| !!! | TTAGGTTTTTGGTGTGTTCC+AGG | + | chr5.4:42711109-42711128 | None:intergenic | 40.0% |
| AAGCATGGAGCAAAGCCATT+CGG | - | chr5.4:42712225-42712244 | MS.gene59651:CDS | 45.0% | |
| ACACACTACAAGAGGAAGCA+TGG | - | chr5.4:42712210-42712229 | MS.gene59651:CDS | 45.0% | |
| ACAGTGCAAGAGAACTGTGT+TGG | + | chr5.4:42711373-42711392 | None:intergenic | 45.0% | |
| ATGAGGATTTGAGCAGGTGA+AGG | + | chr5.4:42711346-42711365 | None:intergenic | 45.0% | |
| CAGTCACCTCTAACTGCAAA+TGG | + | chr5.4:42712270-42712289 | None:intergenic | 45.0% | |
| CATTTGCAGTTAGAGGTGAC+TGG | - | chr5.4:42712268-42712287 | MS.gene59651:CDS | 45.0% | |
| CTGATCTTCACAACTCTCGA+CGG | + | chr5.4:42712412-42712431 | None:intergenic | 45.0% | |
| GCTGAAGCCAAATGATGATC+AGG | + | chr5.4:42711298-42711317 | None:intergenic | 45.0% | |
| GGGAAACCATTTGCAGTTAG+AGG | - | chr5.4:42712261-42712280 | MS.gene59651:CDS | 45.0% | |
| TCACCTGCTCAAATCCTCAT+TGG | - | chr5.4:42711346-42711365 | MS.gene59651:CDS | 45.0% | |
| TTGGCTTCAGCTCCAATTCA+AGG | - | chr5.4:42711307-42711326 | MS.gene59651:CDS | 45.0% | |
| ! | AGAACTGTGTTGGTCCAATG+AGG | + | chr5.4:42711363-42711382 | None:intergenic | 45.0% |
| ! | CATTCGGGTGTAGAAAGTGT+GGG | - | chr5.4:42712241-42712260 | MS.gene59651:CDS | 45.0% |
| !!! | GTTTTTGGTGTGTTCCAGGA+GGG | + | chr5.4:42711105-42711124 | None:intergenic | 45.0% |
| !!! | TTGTATTTAATTTAAAAAAA+AGG | - | chr5.4:42711928-42711947 | MS.gene59651:intron | 5.0% |
| AGCATGGAGCAAAGCCATTC+GGG | - | chr5.4:42712226-42712245 | MS.gene59651:CDS | 50.0% | |
| AGGGCCAAGTGAGAGTGAAA+TGG | + | chr5.4:42711086-42711105 | None:intergenic | 50.0% | |
| CAGATGCATATGTGGGGACA+TGG | - | chr5.4:42712036-42712055 | MS.gene59651:CDS | 50.0% | |
| CATGTTCGTGCTTTCGGTGA+TGG | - | chr5.4:42712372-42712391 | MS.gene59651:CDS | 50.0% | |
| CCACACTTTCTACACCCGAA+TGG | + | chr5.4:42712243-42712262 | None:intergenic | 50.0% | |
| CCATTCGGGTGTAGAAAGTG+TGG | - | chr5.4:42712240-42712259 | MS.gene59651:CDS | 50.0% | |
| CGTCGAGAGTTGTGAAGATC+AGG | - | chr5.4:42712410-42712429 | MS.gene59651:CDS | 50.0% | |
| GGTCCAATGAGGATTTGAGC+AGG | + | chr5.4:42711352-42711371 | None:intergenic | 50.0% | |
| TCCAAGGTCAAGACCACTCA+AGG | - | chr5.4:42712170-42712189 | MS.gene59651:CDS | 50.0% | |
| ! | TCCTTGAGTGGTCTTGACCT+TGG | + | chr5.4:42712174-42712193 | None:intergenic | 50.0% |
| !! | CCTTGCTATTGCTGTGCAGA+GGG | - | chr5.4:42712126-42712145 | MS.gene59651:CDS | 50.0% |
| !! | CTTGCTATTGCTGTGCAGAG+GGG | - | chr5.4:42712127-42712146 | MS.gene59651:CDS | 50.0% |
| !! | TCCTTGCTATTGCTGTGCAG+AGG | - | chr5.4:42712125-42712144 | MS.gene59651:CDS | 50.0% |
| !!! | GGTTTTTGGTGTGTTCCAGG+AGG | + | chr5.4:42711106-42711125 | None:intergenic | 50.0% |
| CCCTCTGCACAGCAATAGCA+AGG | + | chr5.4:42712129-42712148 | None:intergenic | 55.0% | |
| TCACAACTCTCGACGGTGTG+TGG | + | chr5.4:42712405-42712424 | None:intergenic | 55.0% | |
| TCACTCTCACTTGGCCCTCC+TGG | - | chr5.4:42711088-42711107 | MS.gene59651:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 42711016 | 42712434 | 42711016 | ID=MS.gene59651 |
| chr5.4 | mRNA | 42711016 | 42712434 | 42711016 | ID=MS.gene59651.t1;Parent=MS.gene59651 |
| chr5.4 | exon | 42712021 | 42712434 | 42712021 | ID=MS.gene59651.t1.exon1;Parent=MS.gene59651.t1 |
| chr5.4 | CDS | 42712021 | 42712434 | 42712021 | ID=cds.MS.gene59651.t1;Parent=MS.gene59651.t1 |
| chr5.4 | exon | 42711016 | 42711411 | 42711016 | ID=MS.gene59651.t1.exon2;Parent=MS.gene59651.t1 |
| chr5.4 | CDS | 42711016 | 42711411 | 42711016 | ID=cds.MS.gene59651.t1;Parent=MS.gene59651.t1 |
| Gene Sequence |
| Protein sequence |
