AlfalfaGEDB | MS.gene59651

M. sativa cultivar XinJiangDaYe / MS.gene59651

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59651.t1	XP_024641056.1	89.6	270	20	1	1	270	1	262	1.00E-141	512.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59651.t1	Q9FX68	70.3	249	52	5	20	263	12	243	6.7e-97	355.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59651.t1	A0A396HR52	89.6	270	20	1	1	270	1	262	7.5e-142	512.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene59651.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59651.t1	MTR_1g093095	69.758	248	63	3	20	265	23	260	6.56e-117	337
MS.gene59651.t1	MTR_4g059870	32.673	202	125	6	58	257	2	194	4.53e-23	98.2
MS.gene59651.t1	MTR_1g016010	35.429	175	99	7	85	256	33	196	4.21e-22	95.1
MS.gene59651.t1	MTR_1g094115	38.095	147	78	6	119	263	56	191	9.24e-22	94.7
MS.gene59651.t1	MTR_1g094115	36.842	152	83	6	114	263	68	208	1.58e-21	94.0
MS.gene59651.t1	MTR_8g017210	34.868	152	86	5	116	265	85	225	1.75e-21	94.0
MS.gene59651.t1	MTR_2g099990	35.443	158	88	6	104	259	58	203	5.54e-21	92.0
MS.gene59651.t1	MTR_2g093960	38.571	140	76	4	116	254	55	185	8.88e-21	91.3
MS.gene59651.t1	MTR_1g112270	35.374	147	84	4	114	259	65	201	1.43e-20	91.3
MS.gene59651.t1	MTR_1g112270	33.140	172	103	5	89	259	52	212	1.52e-20	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59651.t1	AT1G13290	70.281	249	52	5	20	263	12	243	1.32e-119	344
MS.gene59651.t1	AT3G57670	78.443	167	35	1	104	270	199	364	1.50e-101	301
MS.gene59651.t1	AT1G51220	53.608	291	99	8	7	265	34	320	8.46e-101	298
MS.gene59651.t1	AT3G20880	81.169	154	28	1	107	260	241	393	3.51e-97	291
MS.gene59651.t1	AT1G08290	76.282	156	37	0	106	261	164	319	9.25e-96	285
MS.gene59651.t1	AT1G34790	63.333	210	64	3	72	269	83	291	3.76e-92	275
MS.gene59651.t1	AT1G34370	38.728	173	86	6	104	260	9	177	5.58e-27	106
MS.gene59651.t1	AT1G34370	40.909	154	78	5	116	260	238	387	2.08e-26	107
MS.gene59651.t1	AT1G34370	40.909	154	78	5	116	260	238	387	2.08e-26	107
MS.gene59651.t1	AT5G22890	39.785	186	94	11	87	260	181	360	6.40e-25	102

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Find 58 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACCAGAATCTCTAA+GGG	0.555739	5.4:-42711357	MS.gene59651:CDS
AAAGATCATGTTCGTGCTTT+CGG	0.314009	5.4:-42711062	MS.gene59651:CDS
AAAGGACCAGAATCTCTAAG+GGG	0.721082	5.4:-42711356	MS.gene59651:CDS
AAGCATGGAGCAAAGCCATT+CGG	0.449148	5.4:-42711203	MS.gene59651:CDS
ACACACTACAAGAGGAAGCA+TGG	0.591744	5.4:-42711218	MS.gene59651:CDS
ACAGTGCAAGAGAACTGTGT+TGG	0.625514	5.4:+42712058	None:intergenic
ACCACTTTGCTCATCATCAA+TGG	0.458380	5.4:+42712222	None:intergenic
ACCATTGATGATGAGCAAAG+TGG	0.669448	5.4:-42712223	MS.gene59651:CDS
AGAACAACATAGAGCATCCA+AGG	0.593445	5.4:-42711274	MS.gene59651:CDS
AGAACTGTGTTGGTCCAATG+AGG	0.645090	5.4:+42712068	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGATTCAAGATGGTATTA+AGG	+	chr5.4:42711674-42711693	None:intergenic	30.0%
AGAAAAATTGTGGAAAGCTT+TGG	-	chr5.4:42712301-42712320	MS.gene59651:CDS	30.0%
AGAACACATGAGAAAAATTG+TGG	-	chr5.4:42712291-42712310	MS.gene59651:CDS	30.0%
AGTAGAAGAGTGATTTAATG+TGG	+	chr5.4:42711140-42711159	None:intergenic	30.0%
AGTTTCAATTGAGGATATGT+AGG	+	chr5.4:42711038-42711057	None:intergenic	30.0%
ATATATCAGATGCATATGTG+GGG	-	chr5.4:42712030-42712049	MS.gene59651:CDS	30.0%
ATCCAATATTGACCTTGAAT+TGG	+	chr5.4:42711322-42711341	None:intergenic	30.0%
ATGTCCTAATGCATACTATA+TGG	-	chr5.4:42711806-42711825	MS.gene59651:intron	30.0%
GTATATATCAGATGCATATG+TGG	-	chr5.4:42712028-42712047	MS.gene59651:CDS	30.0%
TCTTCCATATAGTATGCATT+AGG	+	chr5.4:42711813-42711832	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	42711016	42712434	42711016	ID=MS.gene59651
chr5.4	mRNA	42711016	42712434	42711016	ID=MS.gene59651.t1;Parent=MS.gene59651
chr5.4	exon	42712021	42712434	42712021	ID=MS.gene59651.t1.exon1;Parent=MS.gene59651.t1
chr5.4	CDS	42712021	42712434	42712021	ID=cds.MS.gene59651.t1;Parent=MS.gene59651.t1
chr5.4	exon	42711016	42711411	42711016	ID=MS.gene59651.t1.exon2;Parent=MS.gene59651.t1
chr5.4	CDS	42711016	42711411	42711016	ID=cds.MS.gene59651.t1;Parent=MS.gene59651.t1

Gene Sequence

>MS.gene59651

ATGCAAGCTCACACATTCTCCTACATATCCTCAATTGAAACTAATAATGACACTGTTGATGAGTCTTCCATTTCACTCTCACTTGGCCCTCCTGGAACACACCAAAAACCTAAACTATCCTCCACATTAAATCACTCTTCTACTACTCTTCATCATCATCTTCATAATCACCTTCAAAAGCAAAACTTTACCATTGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCACATTGGTCTTCCAACAAACATTTCACAAAACACAACACCTATTAGCAAACCTGATCATCATTTGGCTTCAGCTCCAATTCAAGGTCAATATTGGATTCCTTCACCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACTGTTTGCAATAAAATGTTCAACCGTTTCAATAATATGCAGGTTAGTCAACAAGTAACTTTTCACACTGTAGCATATACAATACCTAAACTGTCTATTGCCTAGCTAGTAGTTCAAGATACATTCATAAGCATTTATTACAAAATTCATTTGTGAAATTCTTTTATCAAAATACCTCAAGTAAACTTTTTTTTTTTTTTTTTTGTCAAAGATTTATAATTTTAAATTTTAAGTAAACTTTTTTTTTTTGTCAAAGATTTATAATTTTAAATTTTCAGTCATTCCTTAATACCATCTTGAATCGTTAACACTTTTTTTTTTTATAAACAAATATTAGTGGTTAATTTGTTAAGAACCATAAAAGTTGTCAAGAACTAGATAATTTGTTAGCACCAGAAAATTTGTCAATACTCCTTCAATGTCCTAATGCATACTATATGGAAGACTCATTAATTTGTTAACAAAAAAATACAAACCTAGAAGATAAAAATGAACAATTGAAAGAAAGAACATTAATTTTTTATTTTATTTTTAAAAGTGTTGTATTTAATTTAAAAAAAAGGAACAGATCCAAGCACAAAATTTTGTCATTTTCTTTTGCACTTAACTATAAAGAACTATTTGATTGTAATGCATTTTTGTATATATCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGGGGAGTAAAACCAGCTTCATCAATGTTAAGACTTCCTTGCTATTGCTGTGCAGAGGGGTGCAAGAACAACATAGAGCATCCAAGGTCAAGACCACTCAAGGATTTCAGAACACTTCAAACACACTACAAGAGGAAGCATGGAGCAAAGCCATTCGGGTGTAGAAAGTGTGGGAAACCATTTGCAGTTAGAGGTGACTGGAGAACACATGAGAAAAATTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACACAAGAGATCTCTTAAAGATCATGTTCGTGCTTTCGGTGATGGTCATGCTCCACACACCGTCGAGAGTTGTGAAGATCAGGAA

Protein sequence

>MS.gene59651.t1

MQAHTFSYISSIETNNDTVDESSISLSLGPPGTHQKPKLSSTLNHSSTTLHHHLHNHLQKQNFTIDDEQSGVTVALHIGLPTNISQNTTPISKPDHHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQE