Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59677.t1 | XP_003614511.2 | 92.9 | 464 | 33 | 0 | 1 | 464 | 1 | 464 | 1.60E-235 | 825.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59677.t1 | Q9SX27 | 50.1 | 469 | 207 | 7 | 3 | 464 | 4 | 452 | 5.3e-110 | 399.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59677.t1 | A0A396HTL1 | 92.9 | 464 | 33 | 0 | 1 | 464 | 1 | 464 | 1.2e-235 | 825.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59677.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59677.t1 | MTR_5g054900 | 96.552 | 464 | 12 | 1 | 1 | 464 | 1 | 460 | 0.0 | 929 |
| MS.gene59677.t1 | MTR_5g054900 | 97.005 | 434 | 13 | 0 | 31 | 464 | 1 | 434 | 0.0 | 877 |
| MS.gene59677.t1 | MTR_5g054900 | 97.450 | 353 | 9 | 0 | 112 | 464 | 1 | 353 | 0.0 | 716 |
| MS.gene59677.t1 | MTR_5g054900 | 96.601 | 353 | 8 | 1 | 112 | 464 | 1 | 349 | 0.0 | 702 |
| MS.gene59677.t1 | MTR_7g089800 | 55.430 | 442 | 176 | 12 | 24 | 464 | 2 | 423 | 1.85e-153 | 442 |
| MS.gene59677.t1 | MTR_7g089800 | 55.430 | 442 | 176 | 12 | 24 | 464 | 31 | 452 | 3.45e-153 | 443 |
| MS.gene59677.t1 | MTR_8g040120 | 51.448 | 449 | 190 | 6 | 29 | 464 | 33 | 466 | 1.99e-141 | 414 |
| MS.gene59677.t1 | MTR_1g111310 | 55.684 | 431 | 106 | 10 | 64 | 464 | 332 | 707 | 1.42e-137 | 412 |
| MS.gene59677.t1 | MTR_1g111310 | 60.831 | 337 | 103 | 5 | 138 | 458 | 3 | 326 | 5.25e-117 | 359 |
| MS.gene59677.t1 | MTR_3g087940 | 49.856 | 347 | 159 | 3 | 126 | 464 | 22 | 361 | 1.22e-110 | 331 |
| MS.gene59677.t1 | MTR_7g092750 | 48.179 | 357 | 170 | 6 | 120 | 464 | 9 | 362 | 1.80e-106 | 320 |
| MS.gene59677.t1 | MTR_7g092750 | 51.613 | 310 | 140 | 3 | 162 | 464 | 157 | 463 | 1.04e-105 | 322 |
| MS.gene59677.t1 | MTR_2g086420 | 53.472 | 288 | 124 | 2 | 177 | 464 | 191 | 468 | 4.55e-101 | 311 |
| MS.gene59677.t1 | MTR_2g086420 | 53.472 | 288 | 124 | 2 | 177 | 464 | 192 | 469 | 5.16e-101 | 311 |
| MS.gene59677.t1 | MTR_4g053250 | 49.541 | 327 | 144 | 4 | 145 | 464 | 149 | 461 | 7.32e-101 | 310 |
| MS.gene59677.t1 | MTR_0126s0080 | 49.825 | 285 | 132 | 3 | 141 | 417 | 178 | 459 | 1.59e-92 | 288 |
| MS.gene59677.t1 | MTR_7g092750 | 42.037 | 383 | 179 | 8 | 96 | 464 | 84 | 437 | 4.63e-87 | 273 |
| MS.gene59677.t1 | MTR_8g091650 | 44.509 | 346 | 166 | 6 | 126 | 464 | 30 | 356 | 2.04e-84 | 264 |
| MS.gene59677.t1 | MTR_8g091650 | 49.129 | 287 | 134 | 3 | 182 | 464 | 5 | 283 | 3.69e-84 | 261 |
| MS.gene59677.t1 | MTR_8g091650 | 48.966 | 290 | 136 | 3 | 179 | 464 | 111 | 392 | 3.49e-83 | 262 |
| MS.gene59677.t1 | MTR_5g060950 | 46.690 | 287 | 142 | 2 | 179 | 461 | 67 | 346 | 9.05e-80 | 252 |
| MS.gene59677.t1 | MTR_3g044820 | 68.208 | 173 | 44 | 3 | 170 | 331 | 36 | 208 | 3.18e-77 | 240 |
| MS.gene59677.t1 | MTR_3g073560 | 44.828 | 290 | 149 | 2 | 177 | 462 | 63 | 345 | 1.38e-76 | 251 |
| MS.gene59677.t1 | MTR_1g111320 | 43.939 | 198 | 41 | 8 | 64 | 242 | 65 | 211 | 2.37e-31 | 120 |
| MS.gene59677.t1 | MTR_8g094690 | 26.556 | 241 | 149 | 4 | 239 | 451 | 7 | 247 | 1.08e-12 | 68.6 |
| MS.gene59677.t1 | MTR_1g090370 | 27.830 | 212 | 123 | 6 | 251 | 457 | 42 | 228 | 5.57e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59677.t1 | AT1G68640 | 50.734 | 477 | 192 | 9 | 3 | 464 | 4 | 452 | 2.31e-141 | 413 |
| MS.gene59677.t1 | AT3G12250 | 63.636 | 330 | 108 | 5 | 145 | 464 | 3 | 330 | 5.91e-137 | 397 |
| MS.gene59677.t1 | AT3G12250 | 63.636 | 330 | 108 | 5 | 145 | 464 | 3 | 330 | 5.91e-137 | 397 |
| MS.gene59677.t1 | AT3G12250 | 63.636 | 330 | 108 | 5 | 145 | 464 | 3 | 330 | 5.91e-137 | 397 |
| MS.gene59677.t1 | AT3G12250 | 63.636 | 330 | 108 | 5 | 145 | 464 | 3 | 330 | 5.91e-137 | 397 |
| MS.gene59677.t1 | AT3G12250 | 64.013 | 314 | 106 | 3 | 156 | 464 | 13 | 324 | 8.68e-135 | 391 |
| MS.gene59677.t1 | AT3G12250 | 67.014 | 288 | 94 | 1 | 177 | 464 | 17 | 303 | 4.89e-134 | 389 |
| MS.gene59677.t1 | AT5G06950 | 68.403 | 288 | 90 | 1 | 177 | 464 | 44 | 330 | 7.67e-134 | 389 |
| MS.gene59677.t1 | AT5G06950 | 68.403 | 288 | 90 | 1 | 177 | 464 | 44 | 330 | 7.67e-134 | 389 |
| MS.gene59677.t1 | AT5G06950 | 68.403 | 288 | 90 | 1 | 177 | 464 | 44 | 330 | 7.67e-134 | 389 |
| MS.gene59677.t1 | AT5G06950 | 68.403 | 288 | 90 | 1 | 177 | 464 | 44 | 330 | 7.67e-134 | 389 |
| MS.gene59677.t1 | AT5G06950 | 68.403 | 288 | 90 | 1 | 177 | 464 | 44 | 330 | 7.67e-134 | 389 |
| MS.gene59677.t1 | AT3G12250 | 65.161 | 310 | 101 | 3 | 160 | 464 | 48 | 355 | 4.78e-133 | 388 |
| MS.gene59677.t1 | AT5G06960 | 63.542 | 288 | 104 | 1 | 177 | 464 | 44 | 330 | 2.20e-122 | 360 |
| MS.gene59677.t1 | AT5G06960 | 63.542 | 288 | 104 | 1 | 177 | 464 | 44 | 330 | 2.20e-122 | 360 |
| MS.gene59677.t1 | AT5G06960 | 62.500 | 288 | 107 | 1 | 177 | 464 | 24 | 310 | 3.29e-122 | 359 |
| MS.gene59677.t1 | AT1G08320 | 55.903 | 288 | 117 | 2 | 177 | 464 | 52 | 329 | 3.69e-110 | 330 |
| MS.gene59677.t1 | AT1G08320 | 55.903 | 288 | 117 | 2 | 177 | 464 | 52 | 329 | 3.69e-110 | 330 |
| MS.gene59677.t1 | AT1G08320 | 55.903 | 288 | 117 | 2 | 177 | 464 | 176 | 453 | 1.37e-108 | 330 |
| MS.gene59677.t1 | AT1G08320 | 55.903 | 288 | 117 | 2 | 177 | 464 | 176 | 453 | 1.37e-108 | 330 |
| MS.gene59677.t1 | AT1G08320 | 55.903 | 288 | 117 | 2 | 177 | 464 | 176 | 453 | 1.37e-108 | 330 |
| MS.gene59677.t1 | AT5G06839 | 52.812 | 320 | 139 | 3 | 157 | 464 | 139 | 458 | 4.49e-108 | 328 |
| MS.gene59677.t1 | AT5G06839 | 52.830 | 318 | 138 | 3 | 159 | 464 | 98 | 415 | 1.28e-107 | 325 |
| MS.gene59677.t1 | AT5G06839 | 53.292 | 319 | 136 | 4 | 159 | 464 | 98 | 416 | 2.24e-107 | 325 |
| MS.gene59677.t1 | AT5G10030 | 51.385 | 325 | 144 | 5 | 146 | 464 | 46 | 362 | 1.48e-101 | 308 |
| MS.gene59677.t1 | AT5G10030 | 51.385 | 325 | 144 | 5 | 146 | 464 | 46 | 362 | 1.48e-101 | 308 |
| MS.gene59677.t1 | AT5G10030 | 51.385 | 325 | 144 | 5 | 146 | 464 | 46 | 362 | 1.48e-101 | 308 |
| MS.gene59677.t1 | AT5G10030 | 51.385 | 325 | 144 | 5 | 146 | 464 | 46 | 362 | 1.48e-101 | 308 |
| MS.gene59677.t1 | AT5G10030 | 51.385 | 325 | 144 | 5 | 146 | 464 | 46 | 362 | 1.48e-101 | 308 |
| MS.gene59677.t1 | AT1G77920 | 47.965 | 344 | 162 | 6 | 124 | 464 | 37 | 366 | 1.02e-98 | 301 |
| MS.gene59677.t1 | AT1G22070 | 51.987 | 302 | 135 | 4 | 167 | 464 | 87 | 382 | 3.23e-97 | 298 |
| MS.gene59677.t1 | AT5G65210 | 53.103 | 290 | 125 | 4 | 179 | 464 | 14 | 296 | 9.94e-96 | 291 |
| MS.gene59677.t1 | AT5G65210 | 53.103 | 290 | 125 | 4 | 179 | 464 | 84 | 366 | 2.22e-95 | 292 |
| MS.gene59677.t1 | AT5G65210 | 53.103 | 290 | 125 | 4 | 179 | 464 | 84 | 366 | 2.22e-95 | 292 |
| MS.gene59677.t1 | AT5G65210 | 53.103 | 290 | 125 | 4 | 179 | 464 | 84 | 366 | 2.22e-95 | 292 |
| MS.gene59677.t1 | AT5G65210 | 53.103 | 290 | 125 | 4 | 179 | 464 | 84 | 366 | 2.22e-95 | 292 |
| MS.gene59677.t1 | AT5G65210 | 53.103 | 290 | 125 | 4 | 179 | 464 | 84 | 366 | 2.22e-95 | 292 |
| MS.gene59677.t1 | AT5G65210 | 53.103 | 290 | 125 | 4 | 179 | 464 | 84 | 366 | 2.22e-95 | 292 |
Find 107 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGACCGTTTCCTCTAT+TGG | 0.301083 | 5.4:-43352746 | None:intergenic |
| GATGTATTTCACATGCTCTA+TGG | 0.304561 | 5.4:+43353593 | MS.gene59677:CDS |
| GTTGAGAATTGGGCTGATTC+TGG | 0.310388 | 5.4:+43352395 | MS.gene59677:CDS |
| GGGAATAGCTTCCTTGCCTT+TGG | 0.313064 | 5.4:+43352361 | MS.gene59677:CDS |
| CATTTACCTTCTTCCGTAAC+CGG | 0.349444 | 5.4:-43352929 | None:intergenic |
| CATGTAATCAGATACATTTC+CGG | 0.361147 | 5.4:-43354124 | None:intergenic |
| TCAGTATCCGGTACAGGTTC+CGG | 0.367258 | 5.4:+43354105 | MS.gene59677:CDS |
| AAGTCCAACAATGTTGTTAT+TGG | 0.370112 | 5.4:+43351484 | MS.gene59677:CDS |
| GGTGGTAGTAACATGCAGTA+TGG | 0.375687 | 5.4:+43351505 | MS.gene59677:CDS |
| GAAATTGTCATGTTGAGAAT+TGG | 0.381065 | 5.4:+43352384 | MS.gene59677:CDS |
| CAAGTCCGCCCCTACTCCCT+TGG | 0.382396 | 5.4:-43354537 | None:intergenic |
| TACGAGCACTTAGTTCGTTA+TGG | 0.393700 | 5.4:+43354505 | MS.gene59677:CDS |
| GGTCATTCTTCTGTTGGAAA+TGG | 0.397460 | 5.4:+43353271 | MS.gene59677:CDS |
| GGAATAGCTTCCTTGCCTTT+GGG | 0.406539 | 5.4:+43352362 | MS.gene59677:CDS |
| TGTTCATTGCAAATGCCATC+TGG | 0.411477 | 5.4:-43354149 | None:intergenic |
| GGTGCAGGGTGTTCGGATGC+AGG | 0.422787 | 5.4:+43352296 | MS.gene59677:CDS |
| ACCACCAATAACAACATTGT+TGG | 0.423227 | 5.4:-43351488 | None:intergenic |
| ATTAACTGAAAATCAGTTGA+TGG | 0.424012 | 5.4:+43353978 | MS.gene59677:CDS |
| GTGATCTTCAGCTCTGAACT+TGG | 0.429104 | 5.4:-43352779 | None:intergenic |
| ATCGGCGTTAAATTCTCAAA+TGG | 0.431815 | 5.4:+43353484 | MS.gene59677:CDS |
| GTTGGCACGCCCAAGGGAGT+AGG | 0.432197 | 5.4:+43354527 | MS.gene59677:CDS |
| AATGAACAAGCTTGCACTCC+TGG | 0.437038 | 5.4:+43354164 | MS.gene59677:CDS |
| CGGAAATGTATCTGATTACA+TGG | 0.440246 | 5.4:+43354125 | MS.gene59677:CDS |
| ACTTTATGTTAGTCCAATAG+AGG | 0.440624 | 5.4:+43352733 | MS.gene59677:intron |
| GCCACCAACCCTTCTTGCTT+AGG | 0.443177 | 5.4:+43351162 | MS.gene59677:CDS |
| TTCACATGCTCTATGGGTTG+TGG | 0.444720 | 5.4:+43353600 | MS.gene59677:CDS |
| GGCATGTTTATTGCAAATCC+TGG | 0.449620 | 5.4:+43353241 | MS.gene59677:CDS |
| TTCAAATGGTGCAGGGTGTT+CGG | 0.453099 | 5.4:+43352289 | MS.gene59677:CDS |
| ATTGCAAATCCTGGAGATCA+AGG | 0.455546 | 5.4:+43353250 | MS.gene59677:CDS |
| TTGGCACGCCCAAGGGAGTA+GGG | 0.457145 | 5.4:+43354528 | MS.gene59677:CDS |
| TCCTCCACACCCTCAGTATC+CGG | 0.457605 | 5.4:+43354093 | MS.gene59677:CDS |
| TCCAACAATGTTGTTATTGG+TGG | 0.466223 | 5.4:+43351487 | MS.gene59677:CDS |
| TCTACTTGTCGATGGTGTTA+TGG | 0.466239 | 5.4:+43353523 | MS.gene59677:CDS |
| AAGTCCGCCCCTACTCCCTT+GGG | 0.467619 | 5.4:-43354536 | None:intergenic |
| AAATTGTCATGTTGAGAATT+GGG | 0.469910 | 5.4:+43352385 | MS.gene59677:CDS |
| TATTTAGATTAAAGAGCATA+GGG | 0.475914 | 5.4:+43353561 | MS.gene59677:CDS |
| TGACATGGAATACGCCCATT+GGG | 0.481705 | 5.4:+43353427 | MS.gene59677:CDS |
| GCTTCAACGAGTACGTCAAC+AGG | 0.481742 | 5.4:+43353132 | MS.gene59677:CDS |
| GATCAAGGTCATTCTTCTGT+TGG | 0.485204 | 5.4:+43353265 | MS.gene59677:CDS |
| ATGTATTTCACATGCTCTAT+GGG | 0.490472 | 5.4:+43353594 | MS.gene59677:CDS |
| GAAGAATGACCTTGATCTCC+AGG | 0.492393 | 5.4:-43353259 | None:intergenic |
| TGTTAGTCCAATAGAGGAAA+CGG | 0.492474 | 5.4:+43352739 | MS.gene59677:intron |
| TTGACATGGAATACGCCCAT+TGG | 0.507084 | 5.4:+43353426 | MS.gene59677:CDS |
| ATAGGCATATGTACAACAGC+TGG | 0.511396 | 5.4:+43353072 | MS.gene59677:intron |
| GAAAAGCCGGTTACGGAAGA+AGG | 0.511768 | 5.4:+43352923 | MS.gene59677:CDS |
| GCATCTTGTTGTGGAAAGAA+AGG | 0.513779 | 5.4:-43351332 | None:intergenic |
| CGTTATGGTTGGCACGCCCA+AGG | 0.525689 | 5.4:+43354520 | MS.gene59677:CDS |
| TACATTTCCGGAACCTGTAC+CGG | 0.526133 | 5.4:-43354112 | None:intergenic |
| AGCACTTAGTTCGTTATGGT+TGG | 0.528902 | 5.4:+43354509 | MS.gene59677:CDS |
| TCGGCGTTAAATTCTCAAAT+GGG | 0.530762 | 5.4:+43353485 | MS.gene59677:CDS |
| GAGATTGCTTCAAATGGTGC+AGG | 0.534085 | 5.4:+43352281 | MS.gene59677:CDS |
| TCTTCAGCAGTCTACTCAGC+AGG | 0.536008 | 5.4:+43354011 | MS.gene59677:CDS |
| GTGCAGGGTGTTCGGATGCA+GGG | 0.541110 | 5.4:+43352297 | MS.gene59677:CDS |
| ACTCACTTGGTGTTTATCAT+CGG | 0.542557 | 5.4:-43352477 | None:intergenic |
| CAGCAAGGAAAAGCCGGTTA+CGG | 0.543498 | 5.4:+43352916 | MS.gene59677:CDS |
| TTAACTGAAAATCAGTTGAT+GGG | 0.544480 | 5.4:+43353979 | MS.gene59677:CDS |
| CAAACATACCTAAGCAAGAA+GGG | 0.547170 | 5.4:-43351170 | None:intergenic |
| TTGATGCTCGTCAACCCAAT+GGG | 0.548501 | 5.4:-43353441 | None:intergenic |
| GCAGAGTTTCTTGCTTCAAG+AGG | 0.550378 | 5.4:-43354407 | None:intergenic |
| ACCTAAGCAAGAAGGGTTGG+TGG | 0.551481 | 5.4:-43351163 | None:intergenic |
| TGACGACACGTCAGACTGCA+AGG | 0.551582 | 5.4:+43354448 | MS.gene59677:CDS |
| CCTTGTGAAGGAAATCCTCC+AGG | 0.552077 | 5.4:-43354182 | None:intergenic |
| GCGAGGCAGCAAGGAAAAGC+CGG | 0.552781 | 5.4:+43352910 | MS.gene59677:CDS |
| GTTATGGTTGGCACGCCCAA+GGG | 0.555357 | 5.4:+43354521 | MS.gene59677:CDS |
| GTGGTAGTAACATGCAGTAT+GGG | 0.556094 | 5.4:+43351506 | MS.gene59677:CDS |
| ATCTGATTACATGGGCCAGA+TGG | 0.556171 | 5.4:+43354134 | MS.gene59677:CDS |
| TGGAAGTATCATCAGTCTGT+TGG | 0.557670 | 5.4:-43352436 | None:intergenic |
| CTCAGAATCGCGAGGCAGCA+AGG | 0.558796 | 5.4:+43352901 | MS.gene59677:CDS |
| CCTTGAGAATTTCAGATGAA+CGG | 0.560398 | 5.4:-43353664 | None:intergenic |
| GCAGTCTACTCAGCAGGCTG+AGG | 0.561351 | 5.4:+43354017 | MS.gene59677:CDS |
| TCTGCAGAGATTGCTTCAAA+TGG | 0.562418 | 5.4:+43352275 | MS.gene59677:CDS |
| GTTGATGCTCGTCAACCCAA+TGG | 0.564292 | 5.4:-43353442 | None:intergenic |
| TTATTTAGATTAAAGAGCAT+AGG | 0.568168 | 5.4:+43353560 | MS.gene59677:CDS |
| ACACCCTCAGTATCCGGTAC+AGG | 0.569132 | 5.4:+43354099 | MS.gene59677:CDS |
| GATTCTGAGCAAGTCTGCGA+AGG | 0.570330 | 5.4:-43352887 | None:intergenic |
| CCGTTCATCTGAAATTCTCA+AGG | 0.573160 | 5.4:+43353664 | MS.gene59677:CDS |
| TGGCACGCCCAAGGGAGTAG+GGG | 0.576284 | 5.4:+43354529 | MS.gene59677:CDS |
| AAATCAACAGCATCTTGTTG+TGG | 0.584033 | 5.4:-43351341 | None:intergenic |
| CATACCTAAGCAAGAAGGGT+TGG | 0.587270 | 5.4:-43351166 | None:intergenic |
| CCTGGAGGATTTCCTTCACA+AGG | 0.589186 | 5.4:+43354182 | MS.gene59677:CDS |
| GCTGAGGATGCTTTATCTCA+CGG | 0.592632 | 5.4:+43354033 | MS.gene59677:CDS |
| TGTACCGGATACTGAGGGTG+TGG | 0.601254 | 5.4:-43354097 | None:intergenic |
| GAATTGGGCTGATTCTGGTG+TGG | 0.601339 | 5.4:+43352400 | MS.gene59677:CDS |
| AAATGTAATCATTTCTGACA+AGG | 0.602307 | 5.4:-43354476 | None:intergenic |
| ACAAACATACCTAAGCAAGA+AGG | 0.605783 | 5.4:-43351171 | None:intergenic |
| ATGACAATTTCCCAAAGGCA+AGG | 0.624956 | 5.4:-43352372 | None:intergenic |
| GGTATCGATATCAATATCAG+TGG | 0.627662 | 5.4:-43352456 | None:intergenic |
| ATTCTGAGCAAGTCTGCGAA+GGG | 0.627771 | 5.4:-43352886 | None:intergenic |
| AGGTGCTCTAGCATTTGACA+TGG | 0.632527 | 5.4:+43353412 | MS.gene59677:intron |
| TCAACATGACAATTTCCCAA+AGG | 0.632745 | 5.4:-43352377 | None:intergenic |
| TATGCTCAATGATCTAAGAT+CGG | 0.636922 | 5.4:+43353466 | MS.gene59677:CDS |
| ACCGGATACTGAGGGTGTGG+AGG | 0.638958 | 5.4:-43354094 | None:intergenic |
| GGAACCTGTACCGGATACTG+AGG | 0.640922 | 5.4:-43354103 | None:intergenic |
| GACGACACGTCAGACTGCAA+GGG | 0.641820 | 5.4:+43354449 | MS.gene59677:CDS |
| GTTCAGAGCTGAAGATCACA+AGG | 0.647306 | 5.4:+43352783 | MS.gene59677:CDS |
| GGATGCTTTATCTCACGGCA+TGG | 0.651448 | 5.4:+43354038 | MS.gene59677:CDS |
| GAACAAGCTTGCACTCCTGG+AGG | 0.653361 | 5.4:+43354167 | MS.gene59677:CDS |
| TTTCAGTTAATGGCTCGAGG+TGG | 0.667041 | 5.4:-43353966 | None:intergenic |
| AGATTGCTTCAAATGGTGCA+GGG | 0.667836 | 5.4:+43352282 | MS.gene59677:CDS |
| GTATGGGACAACAATTAACA+TGG | 0.671970 | 5.4:+43351522 | MS.gene59677:CDS |
| GGAAATGTATCTGATTACAT+GGG | 0.675444 | 5.4:+43354126 | MS.gene59677:CDS |
| ATTTAGATTAAAGAGCATAG+GGG | 0.679279 | 5.4:+43353562 | MS.gene59677:CDS |
| GAACCTGTACCGGATACTGA+GGG | 0.682981 | 5.4:-43354102 | None:intergenic |
| GAATTGCATCTACTTGTCGA+TGG | 0.684467 | 5.4:+43353515 | MS.gene59677:CDS |
| GCAGCAACTGATGTACAACA+AGG | 0.689178 | 5.4:+43352340 | MS.gene59677:CDS |
| CAGACTTGCTCAGAATCGCG+AGG | 0.699430 | 5.4:+43352893 | MS.gene59677:CDS |
| CAGCAACTGATGTACAACAA+GGG | 0.723615 | 5.4:+43352341 | MS.gene59677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCTTTTTTTTAATAAAATTA+GGG | - | chr5.4:43352141-43352160 | None:intergenic | 10.0% |
| !!! | TCCTTTTTTTTAATAAAATT+AGG | - | chr5.4:43352142-43352161 | None:intergenic | 10.0% |
| !! | ATTAAAATGAAAAACAAAAC+TGG | + | chr5.4:43351774-43351793 | MS.gene59677:intron | 15.0% |
| !!! | CCCTAATTTTATTAAAAAAA+AGG | + | chr5.4:43352138-43352157 | MS.gene59677:intron | 15.0% |
| !!! | TTAAGCTTTAATGATATATA+CGG | + | chr5.4:43353037-43353056 | MS.gene59677:intron | 15.0% |
| !!! | TTTTTTAATAAAATTAGGGA+AGG | - | chr5.4:43352137-43352156 | None:intergenic | 15.0% |
| !! | AAAAAATTTAAACACCCAAA+AGG | + | chr5.4:43351813-43351832 | MS.gene59677:intron | 20.0% |
| !! | AATATAGATACATATGCAAA+AGG | - | chr5.4:43352978-43352997 | None:intergenic | 20.0% |
| !! | AGTTATTGTATTGTTTGTAT+CGG | - | chr5.4:43352550-43352569 | None:intergenic | 20.0% |
| !! | ATAATGTTTATTGATCATTC+AGG | + | chr5.4:43353392-43353411 | MS.gene59677:intron | 20.0% |
| !! | CAAATAAAAAATCTTTCTAC+TGG | - | chr5.4:43353632-43353651 | None:intergenic | 20.0% |
| !! | TTAAAAAACACACTATGAAT+TGG | - | chr5.4:43353697-43353716 | None:intergenic | 20.0% |
| !!! | ATTATTTTACATTTTTCCAC+AGG | - | chr5.4:43351606-43351625 | None:intergenic | 20.0% |
| !!! | CAGTAGAAAGATTTTTTATT+TGG | + | chr5.4:43353630-43353649 | MS.gene59677:CDS | 20.0% |
| !!! | TAAACTGTTTTATTTTTTGC+AGG | + | chr5.4:43351442-43351461 | MS.gene59677:intron | 20.0% |
| !!! | TATTTAGATTAAAGAGCATA+GGG | + | chr5.4:43353561-43353580 | MS.gene59677:CDS | 20.0% |
| !!! | TTATTTAGATTAAAGAGCAT+AGG | + | chr5.4:43353560-43353579 | MS.gene59677:CDS | 20.0% |
| !!! | TTATTTTACATTTTTCCACA+GGG | - | chr5.4:43351605-43351624 | None:intergenic | 20.0% |
| !!! | TTCATAGTGTGTTTTTTAAT+CGG | + | chr5.4:43353698-43353717 | MS.gene59677:intron | 20.0% |
| ! | AAATGTAATCATTTCTGACA+AGG | - | chr5.4:43354479-43354498 | None:intergenic | 25.0% |
| ! | AAATTGTCATGTTGAGAATT+GGG | + | chr5.4:43352385-43352404 | MS.gene59677:CDS | 25.0% |
| ! | ATTAACTGAAAATCAGTTGA+TGG | + | chr5.4:43353978-43353997 | MS.gene59677:CDS | 25.0% |
| ! | CAATAAACATTATCACAACT+CGG | - | chr5.4:43353385-43353404 | None:intergenic | 25.0% |
| ! | CTTACAATACACTAAATGAT+GGG | + | chr5.4:43351923-43351942 | MS.gene59677:intron | 25.0% |
| ! | TACACGAGTATTTAAAAATG+AGG | - | chr5.4:43352626-43352645 | None:intergenic | 25.0% |
| ! | TTAACTGAAAATCAGTTGAT+GGG | + | chr5.4:43353979-43353998 | MS.gene59677:CDS | 25.0% |
| ! | TTAATGATATATACGGATGT+TGG | + | chr5.4:43353044-43353063 | MS.gene59677:intron | 25.0% |
| !! | ATAATAAAATTTAGCTCCCT+TGG | - | chr5.4:43354238-43354257 | None:intergenic | 25.0% |
| !! | ATATCTATTTTACCTTGTGA+AGG | - | chr5.4:43354197-43354216 | None:intergenic | 25.0% |
| !! | ATTTAGATTAAAGAGCATAG+GGG | + | chr5.4:43353562-43353581 | MS.gene59677:CDS | 25.0% |
| !! | TTGATTCTGTAATTTTCATG+AGG | + | chr5.4:43351862-43351881 | MS.gene59677:intron | 25.0% |
| !! | TTGTGTTTTCATAGAATGTT+GGG | + | chr5.4:43352252-43352271 | MS.gene59677:intron | 25.0% |
| !! | TTTGTGTTTTCATAGAATGT+TGG | + | chr5.4:43352251-43352270 | MS.gene59677:intron | 25.0% |
| !!! | ATATTTTTGTTGTAGACCAA+GGG | + | chr5.4:43352993-43353012 | MS.gene59677:intron | 25.0% |
| !!! | ATCAACTGATTTTCAGTTAA+TGG | - | chr5.4:43353979-43353998 | None:intergenic | 25.0% |
| !!! | ATCTGTTTTTTTTTTCCTCA+TGG | + | chr5.4:43353200-43353219 | MS.gene59677:intron | 25.0% |
| !!! | GAAAGATTTTTTATTTGGCA+TGG | + | chr5.4:43353635-43353654 | MS.gene59677:CDS | 25.0% |
| !!! | TAATTTTATTTAAGTCCCTG+TGG | - | chr5.4:43351651-43351670 | None:intergenic | 25.0% |
| !!! | TAATTTTATTTTAGTCCCTG+TGG | + | chr5.4:43351587-43351606 | MS.gene59677:intron | 25.0% |
| !!! | TATATTTTTGTTGTAGACCA+AGG | + | chr5.4:43352992-43353011 | MS.gene59677:intron | 25.0% |
| !!! | TCTATTTTTCACATTCATCA+AGG | - | chr5.4:43354277-43354296 | None:intergenic | 25.0% |
| AAAACAAAACTGGTGACATT+TGG | + | chr5.4:43351784-43351803 | MS.gene59677:intron | 30.0% | |
| AAGTCCAACAATGTTGTTAT+TGG | + | chr5.4:43351484-43351503 | MS.gene59677:CDS | 30.0% | |
| ACTTTATGTTAGTCCAATAG+AGG | + | chr5.4:43352733-43352752 | MS.gene59677:intron | 30.0% | |
| AGCAAAACATGTATGAGAAA+TGG | - | chr5.4:43352510-43352529 | None:intergenic | 30.0% | |
| AGCTTGACTTTATAACACAA+GGG | - | chr5.4:43353801-43353820 | None:intergenic | 30.0% | |
| AGTTAATCTTTCTATGCCAA+GGG | + | chr5.4:43354219-43354238 | MS.gene59677:intron | 30.0% | |
| ATGTATTTCACATGCTCTAT+GGG | + | chr5.4:43353594-43353613 | MS.gene59677:CDS | 30.0% | |
| CATGTAATCAGATACATTTC+CGG | - | chr5.4:43354127-43354146 | None:intergenic | 30.0% | |
| CATTAAAATTCACAACCATG+AGG | - | chr5.4:43353218-43353237 | None:intergenic | 30.0% | |
| GAAATTGTCATGTTGAGAAT+TGG | + | chr5.4:43352384-43352403 | MS.gene59677:CDS | 30.0% | |
| GCATTCTCTTGTGATAAAAA+TGG | + | chr5.4:43351211-43351230 | MS.gene59677:intron | 30.0% | |
| GCTTACAATACACTAAATGA+TGG | + | chr5.4:43351922-43351941 | MS.gene59677:intron | 30.0% | |
| GGAAATGTATCTGATTACAT+GGG | + | chr5.4:43354126-43354145 | MS.gene59677:CDS | 30.0% | |
| ! | ACAATGCGTTTTTCTGATAT+TGG | + | chr5.4:43351290-43351309 | MS.gene59677:CDS | 30.0% |
| ! | GTTTTTGATGAAACAAACAG+AGG | + | chr5.4:43351248-43351267 | MS.gene59677:intron | 30.0% |
| ! | TATGCTCAATGATCTAAGAT+CGG | + | chr5.4:43353466-43353485 | MS.gene59677:CDS | 30.0% |
| !! | AAAAATGGTTCATGCTGTTT+TGG | + | chr5.4:43351226-43351245 | MS.gene59677:intron | 30.0% |
| !! | ATGGTTGTGAATTTTAATGC+AGG | + | chr5.4:43353219-43353238 | MS.gene59677:intron | 30.0% |
| !! | ATTATTTTACAACTGTTCCG+AGG | + | chr5.4:43353760-43353779 | MS.gene59677:intron | 30.0% |
| !! | TATTTTTGTTGTAGACCAAG+GGG | + | chr5.4:43352994-43353013 | MS.gene59677:intron | 30.0% |
| !! | TGGTTGTGAATTTTAATGCA+GGG | + | chr5.4:43353220-43353239 | MS.gene59677:intron | 30.0% |
| !! | TTGTTGTCATGCTTGTTTTT+AGG | + | chr5.4:43354380-43354399 | MS.gene59677:intron | 30.0% |
| !! | TTTTGATCTAGTTCCTGATT+TGG | + | chr5.4:43352846-43352865 | MS.gene59677:intron | 30.0% |
| !!! | ATACGGATGTTGGTTTTAAT+AGG | + | chr5.4:43353054-43353073 | MS.gene59677:intron | 30.0% |
| !!! | TGTTTTTTAATCGGAGAATG+AGG | + | chr5.4:43353707-43353726 | MS.gene59677:intron | 30.0% |
| AAACATTATCACAACTCGGT+GGG | - | chr5.4:43353381-43353400 | None:intergenic | 35.0% | |
| AAATCAACAGCATCTTGTTG+TGG | - | chr5.4:43351344-43351363 | None:intergenic | 35.0% | |
| AAATGGTCTCGATGGAAATA+TGG | + | chr5.4:43352947-43352966 | MS.gene59677:intron | 35.0% | |
| AACATGTATGAGAAATGGAG+AGG | - | chr5.4:43352505-43352524 | None:intergenic | 35.0% | |
| AACCATGTGTTTGAACTACT+TGG | - | chr5.4:43354334-43354353 | None:intergenic | 35.0% | |
| AATGGTCTCGATGGAAATAT+GGG | + | chr5.4:43352948-43352967 | MS.gene59677:intron | 35.0% | |
| ACAAACATACCTAAGCAAGA+AGG | - | chr5.4:43351174-43351193 | None:intergenic | 35.0% | |
| ACCACCAATAACAACATTGT+TGG | - | chr5.4:43351491-43351510 | None:intergenic | 35.0% | |
| ACTTTATAACACAAGGGACA+AGG | - | chr5.4:43353795-43353814 | None:intergenic | 35.0% | |
| AGGATAAACTATTACTCGCT+AGG | - | chr5.4:43352198-43352217 | None:intergenic | 35.0% | |
| ATCGGCGTTAAATTCTCAAA+TGG | + | chr5.4:43353484-43353503 | MS.gene59677:CDS | 35.0% | |
| ATGAATATTACAGAGCAACC+CGG | - | chr5.4:43351989-43352008 | None:intergenic | 35.0% | |
| CAAACATACCTAAGCAAGAA+GGG | - | chr5.4:43351173-43351192 | None:intergenic | 35.0% | |
| CAGTTAATCTTTCTATGCCA+AGG | + | chr5.4:43354218-43354237 | MS.gene59677:intron | 35.0% | |
| CCTTGAGAATTTCAGATGAA+CGG | - | chr5.4:43353667-43353686 | None:intergenic | 35.0% | |
| CGGAAATGTATCTGATTACA+TGG | + | chr5.4:43354125-43354144 | MS.gene59677:CDS | 35.0% | |
| GACGCAAAACAAACAACATA+AGG | - | chr5.4:43352218-43352237 | None:intergenic | 35.0% | |
| GAGCTTGACTTTATAACACA+AGG | - | chr5.4:43353802-43353821 | None:intergenic | 35.0% | |
| GATGTATTTCACATGCTCTA+TGG | + | chr5.4:43353593-43353612 | MS.gene59677:CDS | 35.0% | |
| GATTGTGCATAAACATCAAC+TGG | - | chr5.4:43353183-43353202 | None:intergenic | 35.0% | |
| GGATAAACTATTACTCGCTA+GGG | - | chr5.4:43352197-43352216 | None:intergenic | 35.0% | |
| GTATGGGACAACAATTAACA+TGG | + | chr5.4:43351522-43351541 | MS.gene59677:CDS | 35.0% | |
| GTTGCTCTGTAATATTCATG+AGG | + | chr5.4:43351990-43352009 | MS.gene59677:intron | 35.0% | |
| TAAACATTATCACAACTCGG+TGG | - | chr5.4:43353382-43353401 | None:intergenic | 35.0% | |
| TCAACATGACAATTTCCCAA+AGG | - | chr5.4:43352380-43352399 | None:intergenic | 35.0% | |
| TCGGCGTTAAATTCTCAAAT+GGG | + | chr5.4:43353485-43353504 | MS.gene59677:CDS | 35.0% | |
| TGTTAGTCCAATAGAGGAAA+CGG | + | chr5.4:43352739-43352758 | MS.gene59677:intron | 35.0% | |
| TTAGCTCAGTTATTAGAGCT+TGG | + | chr5.4:43352015-43352034 | MS.gene59677:intron | 35.0% | |
| ! | ATTTTACAACTATCTCCGAG+AGG | - | chr5.4:43352072-43352091 | None:intergenic | 35.0% |
| ! | CTAGTGTTAGAACTCCTTTT+GGG | - | chr5.4:43351830-43351849 | None:intergenic | 35.0% |
| ! | TCCAACAATGTTGTTATTGG+TGG | + | chr5.4:43351487-43351506 | MS.gene59677:CDS | 35.0% |
| ! | TTTTACAACTATCTCCGAGA+GGG | - | chr5.4:43352071-43352090 | None:intergenic | 35.0% |
| !! | ACTCACTTGGTGTTTATCAT+CGG | - | chr5.4:43352480-43352499 | None:intergenic | 35.0% |
| !! | GAAAAAAGAGCATCCAAATC+AGG | - | chr5.4:43352862-43352881 | None:intergenic | 35.0% |
| !! | GGTATCGATATCAATATCAG+TGG | - | chr5.4:43352459-43352478 | None:intergenic | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr5.4:43351899-43351918 | None:intergenic | 35.0% |
| AAATGGAGAGGTAACTCACT+TGG | - | chr5.4:43352493-43352512 | None:intergenic | 40.0% | |
| AAGAAGGTAAATGGTCTCGA+TGG | + | chr5.4:43352939-43352958 | MS.gene59677:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr5.4:43351892-43351911 | MS.gene59677:intron | 40.0% | |
| AGATTGCTTCAAATGGTGCA+GGG | + | chr5.4:43352282-43352301 | MS.gene59677:CDS | 40.0% | |
| AGCACTTAGTTCGTTATGGT+TGG | + | chr5.4:43354509-43354528 | MS.gene59677:CDS | 40.0% | |
| ATAGGCATATGTACAACAGC+TGG | + | chr5.4:43353072-43353091 | MS.gene59677:intron | 40.0% | |
| ATGACAATTTCCCAAAGGCA+AGG | - | chr5.4:43352375-43352394 | None:intergenic | 40.0% | |
| ATTGCAAATCCTGGAGATCA+AGG | + | chr5.4:43353250-43353269 | MS.gene59677:CDS | 40.0% | |
| CAAGGGGTTACTGAATTCAA+AGG | + | chr5.4:43353010-43353029 | MS.gene59677:intron | 40.0% | |
| CAGCAACTGATGTACAACAA+GGG | + | chr5.4:43352341-43352360 | MS.gene59677:CDS | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr5.4:43351893-43351912 | MS.gene59677:intron | 40.0% | |
| CATTTACCTTCTTCCGTAAC+CGG | - | chr5.4:43352932-43352951 | None:intergenic | 40.0% | |
| CTGAGAAAGAATTGTCCACA+GGG | + | chr5.4:43351633-43351652 | MS.gene59677:intron | 40.0% | |
| CTTTGAATTCAGTAACCCCT+TGG | - | chr5.4:43353012-43353031 | None:intergenic | 40.0% | |
| GAATTGCATCTACTTGTCGA+TGG | + | chr5.4:43353515-43353534 | MS.gene59677:CDS | 40.0% | |
| GATCAAGGTCATTCTTCTGT+TGG | + | chr5.4:43353265-43353284 | MS.gene59677:CDS | 40.0% | |
| GGCATGTTTATTGCAAATCC+TGG | + | chr5.4:43353241-43353260 | MS.gene59677:CDS | 40.0% | |
| GGTCATTCTTCTGTTGGAAA+TGG | + | chr5.4:43353271-43353290 | MS.gene59677:CDS | 40.0% | |
| GTGGTAGTAACATGCAGTAT+GGG | + | chr5.4:43351506-43351525 | MS.gene59677:CDS | 40.0% | |
| TACGAGCACTTAGTTCGTTA+TGG | + | chr5.4:43354505-43354524 | MS.gene59677:CDS | 40.0% | |
| TCTGAGAAAGAATTGTCCAC+AGG | + | chr5.4:43351632-43351651 | MS.gene59677:intron | 40.0% | |
| TCTGCAGAGATTGCTTCAAA+TGG | + | chr5.4:43352275-43352294 | MS.gene59677:CDS | 40.0% | |
| TGTTCATTGCAAATGCCATC+TGG | - | chr5.4:43354152-43354171 | None:intergenic | 40.0% | |
| TTTGAACTACTTGGCGAAGA+CGG | - | chr5.4:43354325-43354344 | None:intergenic | 40.0% | |
| ! | AACATTATCACAACTCGGTG+GGG | - | chr5.4:43353380-43353399 | None:intergenic | 40.0% |
| ! | AATTCAAATGCCCTCTGAGA+CGG | + | chr5.4:43351695-43351714 | MS.gene59677:intron | 40.0% |
| ! | ACAACTGTTCCGAGGAATTT+TGG | + | chr5.4:43353768-43353787 | MS.gene59677:intron | 40.0% |
| ! | CATTTTACAACCGTCTCAGA+GGG | - | chr5.4:43351708-43351727 | None:intergenic | 40.0% |
| ! | CCAAAAGGAGTTCTAACACT+AGG | + | chr5.4:43351828-43351847 | MS.gene59677:intron | 40.0% |
| ! | CCGTTCATCTGAAATTCTCA+AGG | + | chr5.4:43353664-43353683 | MS.gene59677:CDS | 40.0% |
| ! | CCTAGTGTTAGAACTCCTTT+TGG | - | chr5.4:43351831-43351850 | None:intergenic | 40.0% |
| ! | GATTTTCAGTTAATGGCTCG+AGG | - | chr5.4:43353972-43353991 | None:intergenic | 40.0% |
| ! | GCATCTTGTTGTGGAAAGAA+AGG | - | chr5.4:43351335-43351354 | None:intergenic | 40.0% |
| ! | GTTTTGCTGACATCTGATAG+CGG | + | chr5.4:43352703-43352722 | MS.gene59677:intron | 40.0% |
| ! | TCATTTTACAACCGTCTCAG+AGG | - | chr5.4:43351709-43351728 | None:intergenic | 40.0% |
| ! | TCTACTTGTCGATGGTGTTA+TGG | + | chr5.4:43353523-43353542 | MS.gene59677:CDS | 40.0% |
| !! | TGGAAGTATCATCAGTCTGT+TGG | - | chr5.4:43352439-43352458 | None:intergenic | 40.0% |
| AATGAACAAGCTTGCACTCC+TGG | + | chr5.4:43354164-43354183 | MS.gene59677:CDS | 45.0% | |
| AGAGTGACCGTTTCCTCTAT+TGG | - | chr5.4:43352749-43352768 | None:intergenic | 45.0% | |
| AGCGATGTTCAAATCCCTCT+CGG | + | chr5.4:43352054-43352073 | MS.gene59677:intron | 45.0% | |
| AGGTGCTCTAGCATTTGACA+TGG | + | chr5.4:43353412-43353431 | MS.gene59677:intron | 45.0% | |
| ATCTGATTACATGGGCCAGA+TGG | + | chr5.4:43354134-43354153 | MS.gene59677:CDS | 45.0% | |
| ATTCTGAGCAAGTCTGCGAA+GGG | - | chr5.4:43352889-43352908 | None:intergenic | 45.0% | |
| CATACCTAAGCAAGAAGGGT+TGG | - | chr5.4:43351169-43351188 | None:intergenic | 45.0% | |
| CGCCAAGTAGTTCAAACACA+TGG | + | chr5.4:43354329-43354348 | MS.gene59677:intron | 45.0% | |
| CGGTTACGGAAGAAGGTAAA+TGG | + | chr5.4:43352930-43352949 | MS.gene59677:intron | 45.0% | |
| GAAGAATGACCTTGATCTCC+AGG | - | chr5.4:43353262-43353281 | None:intergenic | 45.0% | |
| GAGATTGCTTCAAATGGTGC+AGG | + | chr5.4:43352281-43352300 | MS.gene59677:CDS | 45.0% | |
| GCAGAGTTTCTTGCTTCAAG+AGG | - | chr5.4:43354410-43354429 | None:intergenic | 45.0% | |
| GCAGCAACTGATGTACAACA+AGG | + | chr5.4:43352340-43352359 | MS.gene59677:CDS | 45.0% | |
| GCTGAGGATGCTTTATCTCA+CGG | + | chr5.4:43354033-43354052 | MS.gene59677:CDS | 45.0% | |
| GGAATAGCTTCCTTGCCTTT+GGG | + | chr5.4:43352362-43352381 | MS.gene59677:CDS | 45.0% | |
| GGACAAGGTCCAAAATTCCT+CGG | - | chr5.4:43353780-43353799 | None:intergenic | 45.0% | |
| GGATTTGAACATCGCTCCTT+CGG | - | chr5.4:43352050-43352069 | None:intergenic | 45.0% | |
| GGTGGTAGTAACATGCAGTA+TGG | + | chr5.4:43351505-43351524 | MS.gene59677:CDS | 45.0% | |
| GTTCAGAGCTGAAGATCACA+AGG | + | chr5.4:43352783-43352802 | MS.gene59677:CDS | 45.0% | |
| TACATTTCCGGAACCTGTAC+CGG | - | chr5.4:43354115-43354134 | None:intergenic | 45.0% | |
| TGACATGGAATACGCCCATT+GGG | + | chr5.4:43353427-43353446 | MS.gene59677:CDS | 45.0% | |
| TTGACATGGAATACGCCCAT+TGG | + | chr5.4:43353426-43353445 | MS.gene59677:CDS | 45.0% | |
| TTGATGCTCGTCAACCCAAT+GGG | - | chr5.4:43353444-43353463 | None:intergenic | 45.0% | |
| TTGGCGAAGACGGTAACTTA+GGG | - | chr5.4:43354315-43354334 | None:intergenic | 45.0% | |
| TTTCAGTTAATGGCTCGAGG+TGG | - | chr5.4:43353969-43353988 | None:intergenic | 45.0% | |
| ! | ACATTATCACAACTCGGTGG+GGG | - | chr5.4:43353379-43353398 | None:intergenic | 45.0% |
| ! | ATGCAGGAGCTTTAGTGTAC+CGG | + | chr5.4:43351967-43351986 | MS.gene59677:intron | 45.0% |
| ! | GTTGAGAATTGGGCTGATTC+TGG | + | chr5.4:43352395-43352414 | MS.gene59677:CDS | 45.0% |
| ! | TTCAAATGGTGCAGGGTGTT+CGG | + | chr5.4:43352289-43352308 | MS.gene59677:CDS | 45.0% |
| ! | TTCACATGCTCTATGGGTTG+TGG | + | chr5.4:43353600-43353619 | MS.gene59677:CDS | 45.0% |
| !! | GTGATCTTCAGCTCTGAACT+TGG | - | chr5.4:43352782-43352801 | None:intergenic | 45.0% |
| !! | ATTAAGAATAATTAATTATA+TGG | - | chr5.4:43353899-43353918 | None:intergenic | 5.0% |
| !! | ATTATTATTAATTAATAAAG+TGG | - | chr5.4:43352107-43352126 | None:intergenic | 5.0% |
| !!! | TTCATTTTAATTTTAAAATT+TGG | - | chr5.4:43351765-43351784 | None:intergenic | 5.0% |
| ACCTAAGCAAGAAGGGTTGG+TGG | - | chr5.4:43351166-43351185 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | - | chr5.4:43351963-43351982 | None:intergenic | 50.0% | |
| CAGCAAGGAAAAGCCGGTTA+CGG | + | chr5.4:43352916-43352935 | MS.gene59677:CDS | 50.0% | |
| CCTGGAGGATTTCCTTCACA+AGG | + | chr5.4:43354182-43354201 | MS.gene59677:CDS | 50.0% | |
| CCTTGTGAAGGAAATCCTCC+AGG | - | chr5.4:43354185-43354204 | None:intergenic | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | - | chr5.4:43351962-43351981 | None:intergenic | 50.0% | |
| CTTGGCGAAGACGGTAACTT+AGG | - | chr5.4:43354316-43354335 | None:intergenic | 50.0% | |
| GAAAAGCCGGTTACGGAAGA+AGG | + | chr5.4:43352923-43352942 | MS.gene59677:CDS | 50.0% | |
| GAACCTGTACCGGATACTGA+GGG | - | chr5.4:43354105-43354124 | None:intergenic | 50.0% | |
| GATTCTGAGCAAGTCTGCGA+AGG | - | chr5.4:43352890-43352909 | None:intergenic | 50.0% | |
| GCTTCAACGAGTACGTCAAC+AGG | + | chr5.4:43353132-43353151 | MS.gene59677:CDS | 50.0% | |
| GGATGCTTTATCTCACGGCA+TGG | + | chr5.4:43354038-43354057 | MS.gene59677:CDS | 50.0% | |
| GGGAATAGCTTCCTTGCCTT+TGG | + | chr5.4:43352361-43352380 | MS.gene59677:CDS | 50.0% | |
| GTTGATGCTCGTCAACCCAA+TGG | - | chr5.4:43353445-43353464 | None:intergenic | 50.0% | |
| TCAGTATCCGGTACAGGTTC+CGG | + | chr5.4:43354105-43354124 | MS.gene59677:CDS | 50.0% | |
| TCTTCAGCAGTCTACTCAGC+AGG | + | chr5.4:43354011-43354030 | MS.gene59677:CDS | 50.0% | |
| ! | GAATTGGGCTGATTCTGGTG+TGG | + | chr5.4:43352400-43352419 | MS.gene59677:CDS | 50.0% |
| ! | TAAATGATGGGACCCCTTCC+CGG | + | chr5.4:43351935-43351954 | MS.gene59677:intron | 50.0% |
| ! | TGCAGGAGCTTTAGTGTACC+GGG | + | chr5.4:43351968-43351987 | MS.gene59677:intron | 50.0% |
| ACACCCTCAGTATCCGGTAC+AGG | + | chr5.4:43354099-43354118 | MS.gene59677:CDS | 55.0% | |
| CATCGCTCCTTCGGCTTACA+AGG | - | chr5.4:43352041-43352060 | None:intergenic | 55.0% | |
| GAACAAGCTTGCACTCCTGG+AGG | + | chr5.4:43354167-43354186 | MS.gene59677:CDS | 55.0% | |
| GACGACACGTCAGACTGCAA+GGG | + | chr5.4:43354449-43354468 | MS.gene59677:CDS | 55.0% | |
| GCCACCAACCCTTCTTGCTT+AGG | + | chr5.4:43351162-43351181 | MS.gene59677:CDS | 55.0% | |
| GGAACCTGTACCGGATACTG+AGG | - | chr5.4:43354106-43354125 | None:intergenic | 55.0% | |
| GTTATGGTTGGCACGCCCAA+GGG | + | chr5.4:43354521-43354540 | MS.gene59677:CDS | 55.0% | |
| TCCTCCACACCCTCAGTATC+CGG | + | chr5.4:43354093-43354112 | MS.gene59677:CDS | 55.0% | |
| TGACGACACGTCAGACTGCA+AGG | + | chr5.4:43354448-43354467 | MS.gene59677:CDS | 55.0% | |
| TGTACCGGATACTGAGGGTG+TGG | - | chr5.4:43354100-43354119 | None:intergenic | 55.0% | |
| ! | CAGACTTGCTCAGAATCGCG+AGG | + | chr5.4:43352893-43352912 | MS.gene59677:CDS | 55.0% |
| !! | AGCTTGGCCTTGTAAGCCGA+AGG | + | chr5.4:43352031-43352050 | MS.gene59677:intron | 55.0% |
| CGTTATGGTTGGCACGCCCA+AGG | + | chr5.4:43354520-43354539 | MS.gene59677:CDS | 60.0% | |
| CTCAGAATCGCGAGGCAGCA+AGG | + | chr5.4:43352901-43352920 | MS.gene59677:CDS | 60.0% | |
| GCAGTCTACTCAGCAGGCTG+AGG | + | chr5.4:43354017-43354036 | MS.gene59677:CDS | 60.0% | |
| GCGAGGCAGCAAGGAAAAGC+CGG | + | chr5.4:43352910-43352929 | MS.gene59677:CDS | 60.0% | |
| ! | ACCGGATACTGAGGGTGTGG+AGG | - | chr5.4:43354097-43354116 | None:intergenic | 60.0% |
| ! | GTGCAGGGTGTTCGGATGCA+GGG | + | chr5.4:43352297-43352316 | MS.gene59677:CDS | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr5.4:43351950-43351969 | None:intergenic | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | - | chr5.4:43351956-43351975 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr5.4:43351951-43351970 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | - | chr5.4:43351957-43351976 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | - | chr5.4:43351952-43351971 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | + | chr5.4:43351951-43351970 | MS.gene59677:intron | 65.0% | |
| ! | GGTGCAGGGTGTTCGGATGC+AGG | + | chr5.4:43352296-43352315 | MS.gene59677:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 43351119 | 43354548 | 43351119 | ID=MS.gene59677 |
| chr5.4 | mRNA | 43351119 | 43354548 | 43351119 | ID=MS.gene59677.t1;Parent=MS.gene59677 |
| chr5.4 | exon | 43351119 | 43351183 | 43351119 | ID=MS.gene59677.t1.exon1;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43351119 | 43351183 | 43351119 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43351268 | 43351371 | 43351268 | ID=MS.gene59677.t1.exon2;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43351268 | 43351371 | 43351268 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43351464 | 43351543 | 43351464 | ID=MS.gene59677.t1.exon3;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43351464 | 43351543 | 43351464 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43352266 | 43352493 | 43352266 | ID=MS.gene59677.t1.exon4;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43352266 | 43352493 | 43352266 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43352745 | 43352804 | 43352745 | ID=MS.gene59677.t1.exon5;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43352745 | 43352804 | 43352745 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43352885 | 43352944 | 43352885 | ID=MS.gene59677.t1.exon6;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43352885 | 43352944 | 43352885 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43353076 | 43353153 | 43353076 | ID=MS.gene59677.t1.exon7;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43353076 | 43353153 | 43353076 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43353241 | 43353292 | 43353241 | ID=MS.gene59677.t1.exon8;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43353241 | 43353292 | 43353241 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43353414 | 43353685 | 43353414 | ID=MS.gene59677.t1.exon9;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43353414 | 43353685 | 43353414 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43353955 | 43354203 | 43353955 | ID=MS.gene59677.t1.exon10;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43353955 | 43354203 | 43353955 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| chr5.4 | exon | 43354402 | 43354548 | 43354402 | ID=MS.gene59677.t1.exon11;Parent=MS.gene59677.t1 |
| chr5.4 | CDS | 43354402 | 43354548 | 43354402 | ID=cds.MS.gene59677.t1;Parent=MS.gene59677.t1 |
| Gene Sequence |
| Protein sequence |
