AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59886

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59886.t1 MTR_8g046350 90.964 166 12 1 1 166 1 163 3.58e-107 303
MS.gene59886.t1 MTR_8g051580 62.147 177 64 1 1 174 1 177 1.15e-74 222
MS.gene59886.t1 MTR_1g047550 57.143 175 72 1 1 172 1 175 7.41e-67 202
MS.gene59886.t1 MTR_4g131030 52.660 188 69 1 1 168 1 188 5.33e-65 198
MS.gene59886.t1 MTR_8g079502 57.485 167 68 1 1 164 1 167 1.68e-63 193
MS.gene59886.t1 MTR_1g063160 54.286 175 77 1 1 172 1 175 3.71e-62 190
MS.gene59886.t1 MTR_1g054265 52.976 168 76 1 1 165 1 168 2.37e-58 180
MS.gene59886.t1 MTR_4g094632 39.157 166 82 5 1 161 1 152 2.51e-31 111
MS.gene59886.t1 MTR_1g106070 45.614 114 55 2 2 108 9 122 2.58e-27 101
MS.gene59886.t1 MTR_3g052870 40.136 147 67 3 2 141 9 141 3.82e-27 102
MS.gene59886.t1 MTR_1g105920 46.491 114 54 2 2 108 9 122 8.46e-27 101
MS.gene59886.t1 MTR_3g080940 45.378 119 57 3 1 114 8 123 2.33e-26 99.8
MS.gene59886.t1 MTR_3g052920 51.546 97 42 2 2 93 9 105 2.81e-26 100
MS.gene59886.t1 MTR_1g105910 44.444 117 58 2 2 111 9 125 3.34e-25 97.4
MS.gene59886.t1 MTR_2g030740 44.444 117 58 2 2 111 9 125 4.45e-25 97.4
MS.gene59886.t1 MTR_1g077360 58.442 77 32 0 2 78 9 85 6.72e-25 96.7
MS.gene59886.t1 MTR_1g108580 37.415 147 66 1 2 122 9 155 2.21e-24 95.1
MS.gene59886.t1 MTR_8g043650 48.454 97 45 1 2 93 9 105 2.69e-24 95.1
MS.gene59886.t1 MTR_1g075600 57.143 77 33 0 2 78 9 85 4.25e-24 94.7
MS.gene59886.t1 MTR_5g045560 52.564 78 37 0 1 78 8 85 4.67e-24 94.7
MS.gene59886.t1 MTR_1g108510 47.525 101 48 2 2 97 9 109 8.51e-24 93.6
MS.gene59886.t1 MTR_5g055100 39.850 133 69 4 2 129 9 135 8.54e-24 94.0
MS.gene59886.t1 MTR_1g012570 48.454 97 45 1 2 93 9 105 9.00e-24 94.0
MS.gene59886.t1 MTR_2g105290 37.313 134 78 3 1 133 11 139 1.18e-23 92.0
MS.gene59886.t1 MTR_3g030770 43.443 122 62 4 2 117 9 129 1.36e-23 93.2
MS.gene59886.t1 MTR_2g093190 38.095 147 65 2 2 122 9 155 1.86e-23 92.8
MS.gene59886.t1 MTR_4g094638 51.316 76 37 0 1 76 1 76 2.00e-23 91.3
MS.gene59886.t1 MTR_3g030780 53.247 77 36 0 2 78 9 85 8.50e-23 88.6
MS.gene59886.t1 MTR_5g053390 54.930 71 32 0 2 72 9 79 1.59e-22 90.5
MS.gene59886.t1 MTR_0121s0080 35.714 154 84 2 2 140 9 162 4.12e-22 89.4
MS.gene59886.t1 MTR_0121s0100 43.564 101 52 1 2 97 9 109 7.15e-22 86.3
MS.gene59886.t1 MTR_8g086290 44.444 99 52 2 2 98 12 109 1.40e-21 86.7
MS.gene59886.t1 MTR_2g085250 51.948 77 37 0 2 78 9 85 2.48e-21 87.4
MS.gene59886.t1 MTR_2g085280 51.948 77 37 0 2 78 9 85 2.51e-21 87.4
MS.gene59886.t1 MTR_7g028448 42.683 82 44 1 17 98 27 105 4.09e-21 85.1
MS.gene59886.t1 MTR_4g036915 42.683 82 44 1 17 98 27 105 4.09e-21 85.1
MS.gene59886.t1 MTR_1g105905 42.478 113 56 2 18 125 8 116 4.99e-21 86.3
MS.gene59886.t1 MTR_5g021270 53.125 64 30 0 1 64 1 64 2.00e-19 82.4
MS.gene59886.t1 MTR_5g021270 53.125 64 30 0 1 64 1 64 2.03e-19 82.4
MS.gene59886.t1 MTR_0003s0590 52.174 69 33 0 1 69 1 69 5.21e-19 81.6
MS.gene59886.t1 MTR_7g062350 57.143 63 27 0 16 78 35 97 1.87e-18 80.1
MS.gene59886.t1 MTR_5g066180 48.611 72 37 0 1 72 1 72 4.17e-18 78.6
MS.gene59886.t1 MTR_1g053070 45.679 81 44 0 1 81 1 81 2.17e-17 77.0
MS.gene59886.t1 MTR_8g087860 34.862 109 71 0 1 109 17 125 3.05e-17 76.6
MS.gene59886.t1 MTR_4g127140 50.704 71 35 0 1 71 11 81 6.25e-17 74.7
MS.gene59886.t1 MTR_5g066960 55.000 60 27 0 1 60 1 60 6.95e-17 71.2
MS.gene59886.t1 MTR_3g452380 49.275 69 35 0 1 69 16 84 9.50e-17 75.5
MS.gene59886.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.04e-16 75.1
MS.gene59886.t1 MTR_8g033220 37.963 108 64 2 1 106 1 107 1.25e-16 74.7
MS.gene59886.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.26e-16 74.7
MS.gene59886.t1 MTR_3g067910 52.459 61 29 0 18 78 6 66 1.30e-16 72.0
MS.gene59886.t1 MTR_8g033220 37.963 108 64 2 1 106 1 107 1.51e-16 74.7
MS.gene59886.t1 MTR_2g017865 30.000 170 102 4 1 156 16 182 1.98e-16 74.7
MS.gene59886.t1 MTR_8g033270 46.377 69 37 0 1 69 1 69 2.46e-16 74.3
MS.gene59886.t1 MTR_2g009890 40.230 87 51 1 1 87 1 86 2.50e-16 74.7
MS.gene59886.t1 MTR_4g093970 38.393 112 66 2 1 112 27 135 2.93e-16 73.9
MS.gene59886.t1 MTR_3g005530 44.928 69 38 0 1 69 1 69 3.40e-16 73.6
MS.gene59886.t1 MTR_3g067875 58.333 48 20 0 18 65 8 55 6.73e-16 68.9
MS.gene59886.t1 MTR_3g113030 48.611 72 35 1 1 72 1 70 9.87e-16 72.4
MS.gene59886.t1 MTR_5g032150 42.857 84 47 1 1 84 1 83 1.56e-15 72.0
MS.gene59886.t1 MTR_1g108500 57.377 61 23 1 4 64 102 159 1.85e-15 72.8
MS.gene59886.t1 MTR_5g032520 42.857 84 47 1 1 84 1 83 2.01e-15 71.6
MS.gene59886.t1 MTR_7g075870 33.663 101 67 0 1 101 1 101 2.47e-15 70.9
MS.gene59886.t1 MTR_3g109930 31.757 148 93 4 17 159 17 161 3.06e-15 70.1
MS.gene59886.t1 MTR_1g038300 46.479 71 36 1 1 69 1 71 4.84e-15 70.5
MS.gene59886.t1 MTR_7g075870 51.724 58 28 0 1 58 1 58 6.84e-15 69.7
MS.gene59886.t1 MTR_4g093030 39.362 94 55 1 1 92 1 94 1.03e-14 68.2
MS.gene59886.t1 MTR_4g102530 43.478 69 39 0 1 69 1 69 1.08e-14 69.3
MS.gene59886.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.27e-14 68.6
MS.gene59886.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.29e-14 68.9
MS.gene59886.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.44e-14 68.2
MS.gene59886.t1 MTR_2g461710 49.123 57 29 0 1 57 1 57 1.46e-14 65.1
MS.gene59886.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.55e-14 68.6
MS.gene59886.t1 MTR_1g101970 43.662 71 40 0 1 71 1 71 1.94e-14 68.2
MS.gene59886.t1 MTR_7g016600 50.877 57 28 0 1 57 1 57 2.45e-14 68.9
MS.gene59886.t1 MTR_4g084740 46.479 71 37 1 1 70 1 71 2.78e-14 69.7
MS.gene59886.t1 MTR_5g046870 50.877 57 28 0 1 57 1 57 3.45e-14 65.9
MS.gene59886.t1 MTR_4g109830 36.170 94 47 2 1 81 1 94 5.34e-14 67.8
MS.gene59886.t1 MTR_8g066260 41.667 72 39 1 1 72 1 69 6.22e-14 67.8
MS.gene59886.t1 MTR_3g084980 52.632 57 27 0 1 57 1 57 7.38e-14 67.4
MS.gene59886.t1 MTR_3g088615 31.250 112 73 1 1 108 1 112 8.83e-14 66.2
MS.gene59886.t1 MTR_8g097090 50.877 57 28 0 1 57 1 57 1.09e-13 67.0
MS.gene59886.t1 MTR_1g029670 41.538 65 38 0 1 65 1 65 1.14e-13 65.9
MS.gene59886.t1 MTR_6g015975 50.877 57 28 0 1 57 1 57 1.14e-13 67.0
MS.gene59886.t1 MTR_5g046790 45.614 57 31 0 1 57 1 57 1.35e-13 66.2
MS.gene59886.t1 MTR_7g016630 38.356 73 44 1 1 72 1 73 1.50e-13 67.0
MS.gene59886.t1 MTR_8g022970 36.893 103 54 2 20 122 36 127 1.63e-13 65.5
MS.gene59886.t1 MTR_4g109810 49.123 57 29 0 1 57 1 57 1.73e-13 66.6
MS.gene59886.t1 MTR_3g102570 42.254 71 40 1 1 70 1 71 2.19e-13 67.0
MS.gene59886.t1 MTR_7g075850 52.632 57 27 0 1 57 1 57 3.88e-13 65.9
MS.gene59886.t1 MTR_6g464720 40.278 72 42 1 1 71 1 72 1.68e-12 63.9
MS.gene59886.t1 MTR_3g437790 46.667 60 31 1 19 77 30 89 1.70e-12 62.8
MS.gene59886.t1 MTR_1g041615 60.870 46 18 0 13 58 17 62 2.38e-12 61.6
MS.gene59886.t1 MTR_5g041650 50.000 54 27 0 1 54 38 91 3.19e-12 63.9
MS.gene59886.t1 MTR_3g067870 52.083 48 23 0 18 65 92 139 4.46e-12 61.2
MS.gene59886.t1 MTR_4g051538 29.839 124 70 4 19 136 26 138 6.45e-11 59.3
MS.gene59886.t1 MTR_4g108720 40.789 76 43 1 1 74 1 76 6.64e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59886.t1 AT2G34440 38.596 171 92 2 1 158 1 171 9.14e-36 123
MS.gene59886.t1 AT3G66656 48.031 127 60 2 1 121 1 127 4.57e-31 111
MS.gene59886.t1 AT5G60440 45.775 142 66 5 2 136 7 144 2.90e-28 107
MS.gene59886.t1 AT2G24840 41.935 124 61 2 1 117 62 181 1.71e-27 104
MS.gene59886.t1 AT4G36590 37.952 166 78 5 2 157 7 157 2.72e-24 95.5
MS.gene59886.t1 AT1G01530 41.007 139 75 2 1 136 6 140 8.26e-24 94.4
MS.gene59886.t1 AT1G65360 42.373 118 52 3 1 109 6 116 5.77e-22 89.0
MS.gene59886.t1 AT1G72350 40.496 121 65 3 2 122 43 156 1.23e-20 85.5
MS.gene59886.t1 AT1G47760 31.056 161 101 3 1 154 1 158 5.81e-20 82.8
MS.gene59886.t1 AT4G24540 40.230 87 52 0 1 87 1 87 3.75e-19 81.3
MS.gene59886.t1 AT5G65070 38.655 119 69 4 1 116 1 118 4.02e-19 79.3
MS.gene59886.t1 AT5G65070 37.143 140 81 5 1 134 1 139 1.20e-18 79.7
MS.gene59886.t1 AT3G61120 30.539 167 104 4 1 155 1 167 1.28e-18 80.5
MS.gene59886.t1 AT5G13790 40.206 97 58 0 1 97 1 97 1.97e-18 80.5
MS.gene59886.t1 AT5G13790 37.705 122 54 1 1 122 1 100 2.94e-18 80.1
MS.gene59886.t1 AT3G57390 50.725 69 34 0 1 69 1 69 5.57e-18 78.6
MS.gene59886.t1 AT1G28460 46.377 69 37 0 2 70 8 76 7.18e-18 77.0
MS.gene59886.t1 AT1G29962 45.833 72 39 0 2 73 8 79 7.48e-18 77.0
MS.gene59886.t1 AT4G22950 43.590 78 44 0 1 78 1 78 8.78e-18 76.6
MS.gene59886.t1 AT3G57390 50.725 69 34 0 1 69 1 69 9.61e-18 78.2
MS.gene59886.t1 AT3G57230 46.377 69 37 0 1 69 1 69 1.31e-17 75.5
MS.gene59886.t1 AT3G57230 46.377 69 37 0 1 69 1 69 2.91e-17 76.6
MS.gene59886.t1 AT3G57230 46.377 69 37 0 1 69 1 69 2.91e-17 76.6
MS.gene59886.t1 AT2G22540 39.423 104 61 2 1 103 1 103 3.07e-17 76.6
MS.gene59886.t1 AT2G22540 39.423 104 61 2 1 103 1 103 3.07e-17 76.6
MS.gene59886.t1 AT4G09960 33.103 145 91 3 1 145 1 139 4.35e-17 75.9
MS.gene59886.t1 AT4G09960 38.462 91 51 1 1 91 1 86 5.77e-17 75.9
MS.gene59886.t1 AT4G09960 38.462 91 51 1 1 91 2 87 5.99e-17 75.9
MS.gene59886.t1 AT2G45650 46.377 69 37 0 1 69 1 69 6.19e-17 75.9
MS.gene59886.t1 AT5G65080 35.915 142 85 3 1 136 8 149 6.23e-17 74.7
MS.gene59886.t1 AT2G22630 49.275 69 35 0 1 69 1 69 6.36e-17 75.5
MS.gene59886.t1 AT2G22630 49.275 69 35 0 1 69 1 69 6.36e-17 75.5
MS.gene59886.t1 AT4G22950 43.590 78 44 0 1 78 1 78 7.54e-17 75.1
MS.gene59886.t1 AT4G22950 43.590 78 44 0 1 78 1 78 7.54e-17 75.1
MS.gene59886.t1 AT2G45660 34.286 105 69 0 1 105 1 105 8.12e-17 73.9
MS.gene59886.t1 AT4G09960 33.607 122 78 1 1 122 11 129 8.55e-17 75.5
MS.gene59886.t1 AT3G04100 43.421 76 40 1 2 74 14 89 8.74e-17 74.7
MS.gene59886.t1 AT4G09960 33.607 122 78 1 1 122 27 145 1.16e-16 75.5
MS.gene59886.t1 AT4G09960 33.607 122 78 1 1 122 96 214 1.49e-16 75.9
MS.gene59886.t1 AT1G17310 58.621 58 22 1 17 74 63 118 1.56e-16 74.3
MS.gene59886.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.71e-16 73.2
MS.gene59886.t1 AT1G17310 58.621 58 22 1 17 74 74 129 2.25e-16 74.3
MS.gene59886.t1 AT5G65070 43.210 81 44 2 1 79 1 81 2.40e-16 73.9
MS.gene59886.t1 AT2G45660 34.286 105 69 0 1 105 1 105 2.52e-16 73.6
MS.gene59886.t1 AT4G37940 46.377 69 37 0 1 69 1 69 2.91e-16 73.9
MS.gene59886.t1 AT5G10140 54.386 57 26 0 1 57 1 57 2.99e-16 72.8
MS.gene59886.t1 AT5G10140 53.448 58 27 0 1 58 1 58 3.07e-16 72.8
MS.gene59886.t1 AT5G65070 43.210 81 44 2 1 79 1 81 3.47e-16 73.2
MS.gene59886.t1 AT5G51870 46.377 69 37 0 1 69 1 69 3.65e-16 73.2
MS.gene59886.t1 AT5G10140 54.386 57 26 0 1 57 1 57 3.66e-16 72.8
MS.gene59886.t1 AT5G65070 45.070 71 37 1 1 69 1 71 3.77e-16 73.6
MS.gene59886.t1 AT5G51870 46.377 69 37 0 1 69 1 69 3.84e-16 72.4
MS.gene59886.t1 AT4G37940 46.377 69 37 0 1 69 1 69 3.91e-16 73.2
MS.gene59886.t1 AT3G54340 50.000 62 31 0 1 62 1 62 4.58e-16 73.6
MS.gene59886.t1 AT5G51870 46.377 69 37 0 1 69 24 92 5.94e-16 72.4
MS.gene59886.t1 AT5G51870 46.377 69 37 0 1 69 1 69 7.27e-16 72.8
MS.gene59886.t1 AT4G37940 43.210 81 42 1 1 77 1 81 7.76e-16 71.6
MS.gene59886.t1 AT5G51870 46.377 69 37 0 1 69 11 79 1.02e-15 72.4
MS.gene59886.t1 AT3G58780 33.945 109 72 0 1 109 16 124 1.02e-15 72.8
MS.gene59886.t1 AT3G58780 33.945 109 72 0 1 109 22 130 1.04e-15 72.8
MS.gene59886.t1 AT2G22540 56.364 55 24 0 1 55 1 55 1.48e-15 72.0
MS.gene59886.t1 AT3G58780 33.945 109 72 0 1 109 16 124 1.72e-15 72.4
MS.gene59886.t1 AT5G51860 46.377 69 37 0 1 69 1 69 2.10e-15 71.2
MS.gene59886.t1 AT5G51860 46.377 69 37 0 1 69 1 69 2.22e-15 71.2
MS.gene59886.t1 AT5G65060 56.364 55 24 0 1 55 1 55 2.41e-15 70.9
MS.gene59886.t1 AT2G42830 44.928 69 38 0 1 69 16 84 2.43e-15 71.6
MS.gene59886.t1 AT4G11880 54.386 57 26 0 1 57 1 57 2.53e-15 70.5
MS.gene59886.t1 AT4G11880 54.386 57 26 0 1 57 1 57 2.53e-15 70.5
MS.gene59886.t1 AT2G42830 44.928 69 38 0 1 69 16 84 2.74e-15 71.6
MS.gene59886.t1 AT5G65050 54.545 55 25 0 1 55 1 55 3.06e-15 70.1
MS.gene59886.t1 AT4G18960 32.308 130 83 2 2 131 18 142 3.06e-15 71.6
MS.gene59886.t1 AT5G20240 49.206 63 32 0 1 63 1 63 3.07e-15 69.3
MS.gene59886.t1 AT5G65060 56.364 55 24 0 1 55 1 55 3.92e-15 70.1
MS.gene59886.t1 AT1G22130 49.296 71 35 1 1 70 1 71 4.02e-15 72.0
MS.gene59886.t1 AT3G58780 40.698 86 38 1 1 73 16 101 4.39e-15 70.9
MS.gene59886.t1 AT5G65060 56.364 55 24 0 1 55 1 55 4.53e-15 69.7
MS.gene59886.t1 AT5G23260 59.649 57 23 0 1 57 17 73 5.49e-15 70.9
MS.gene59886.t1 AT5G62165 32.673 101 68 0 1 101 1 101 5.49e-15 68.9
MS.gene59886.t1 AT5G62165 32.673 101 68 0 1 101 1 101 5.49e-15 68.9
MS.gene59886.t1 AT5G62165 32.673 101 68 0 1 101 1 101 5.49e-15 68.9
MS.gene59886.t1 AT5G23260 59.649 57 23 0 1 57 1 57 5.59e-15 70.9
MS.gene59886.t1 AT2G14210 53.448 58 27 0 1 58 1 58 5.60e-15 70.5
MS.gene59886.t1 AT5G23260 59.649 57 23 0 1 57 17 73 5.63e-15 70.9
MS.gene59886.t1 AT1G71692 44.444 72 39 1 1 71 1 72 5.70e-15 70.1
MS.gene59886.t1 AT5G23260 59.649 57 23 0 1 57 1 57 5.74e-15 70.5
MS.gene59886.t1 AT4G11880 53.448 58 27 0 1 58 1 58 6.66e-15 70.1
MS.gene59886.t1 AT4G11880 53.448 58 27 0 1 58 1 58 6.66e-15 70.1
MS.gene59886.t1 AT2G14210 53.448 58 27 0 1 58 1 58 7.27e-15 70.1
MS.gene59886.t1 AT5G20240 49.206 63 32 0 1 63 1 63 7.42e-15 69.7
MS.gene59886.t1 AT5G62165 40.000 75 45 0 1 75 1 75 8.80e-15 67.0
MS.gene59886.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.80e-15 68.2
MS.gene59886.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.80e-15 68.2
MS.gene59886.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.80e-15 68.2
MS.gene59886.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.80e-15 68.2
MS.gene59886.t1 AT5G62165 50.877 57 28 0 1 57 1 57 9.80e-15 68.2
MS.gene59886.t1 AT2G03710 54.386 57 26 0 1 57 1 57 1.27e-14 68.6
MS.gene59886.t1 AT1G77980 47.887 71 36 1 1 70 1 71 1.35e-14 70.5
MS.gene59886.t1 AT3G58780 30.303 132 92 0 1 132 16 147 1.37e-14 70.1
MS.gene59886.t1 AT5G65050 54.545 55 25 0 1 55 1 55 1.39e-14 68.9
MS.gene59886.t1 AT5G65050 54.545 55 25 0 1 55 1 55 1.52e-14 68.6
MS.gene59886.t1 AT5G65050 54.545 55 25 0 1 55 1 55 1.53e-14 68.2
MS.gene59886.t1 AT5G62165 40.000 75 45 0 1 75 1 75 1.81e-14 68.6
MS.gene59886.t1 AT5G62165 40.000 75 45 0 1 75 1 75 1.81e-14 68.6
MS.gene59886.t1 AT5G62165 42.029 69 40 0 1 69 1 69 2.01e-14 68.6
MS.gene59886.t1 AT5G62165 42.029 69 40 0 1 69 1 69 2.01e-14 68.6
MS.gene59886.t1 AT5G62165 42.029 69 40 0 1 69 1 69 2.01e-14 68.6
MS.gene59886.t1 AT5G65080 50.909 55 27 0 1 55 8 62 3.09e-14 68.2
MS.gene59886.t1 AT3G30260 49.123 57 29 0 1 57 1 57 3.21e-14 68.6
MS.gene59886.t1 AT1G69120 43.056 72 38 1 1 72 1 69 3.73e-14 68.2
MS.gene59886.t1 AT2G03710 54.386 57 26 0 1 57 1 57 4.45e-14 68.6
MS.gene59886.t1 AT2G03710 54.386 57 26 0 1 57 1 57 4.68e-14 68.2
MS.gene59886.t1 AT4G37435 30.058 173 93 6 1 147 1 171 4.93e-14 67.0
MS.gene59886.t1 AT1G46408 48.148 81 35 4 1 74 1 81 6.96e-14 67.8
MS.gene59886.t1 AT1G69120 43.056 72 38 1 1 72 1 69 7.52e-14 67.8
MS.gene59886.t1 AT5G15800 50.877 57 28 0 1 57 1 57 8.12e-14 67.8
MS.gene59886.t1 AT3G02310 50.877 57 28 0 1 57 1 57 9.43e-14 66.6
MS.gene59886.t1 AT1G28450 40.278 72 43 0 2 73 8 79 1.06e-13 66.2
MS.gene59886.t1 AT5G15800 50.877 57 28 0 1 57 1 57 1.26e-13 67.4
MS.gene59886.t1 AT5G60910 40.278 72 40 1 1 72 1 69 1.27e-13 67.0
MS.gene59886.t1 AT1G24260 50.877 57 28 0 1 57 1 57 1.48e-13 67.0
MS.gene59886.t1 AT1G24260 50.877 57 28 0 1 57 1 57 1.59e-13 66.6
MS.gene59886.t1 AT1G24260 50.877 57 28 0 1 57 1 57 1.62e-13 66.6
MS.gene59886.t1 AT3G02310 50.877 57 28 0 1 57 1 57 1.72e-13 66.6
MS.gene59886.t1 AT1G26310 46.552 58 31 0 1 58 1 58 1.89e-13 66.6
MS.gene59886.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.05e-12 65.5
MS.gene59886.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.11e-12 65.5
MS.gene59886.t1 AT1G18750 40.789 76 43 1 1 74 1 76 1.20e-12 65.1
MS.gene59886.t1 AT5G49490 44.444 72 36 1 3 70 46 117 1.54e-12 64.3
MS.gene59886.t1 AT1G69540 40.000 75 44 1 1 74 1 75 1.76e-12 64.7
MS.gene59886.t1 AT5G38620 43.056 72 37 1 3 70 6 77 1.99e-12 64.7
MS.gene59886.t1 AT1G69540 40.000 75 44 1 1 74 1 75 2.21e-12 64.3
MS.gene59886.t1 AT5G49420 42.857 77 39 2 3 74 8 84 2.40e-12 64.3
MS.gene59886.t1 AT5G04640 40.260 77 41 2 3 74 5 81 3.26e-12 63.9
MS.gene59886.t1 AT1G60920 33.775 151 78 7 3 146 5 140 6.90e-12 61.6
MS.gene59886.t1 AT1G77950 38.028 71 43 1 1 70 1 71 8.23e-12 62.0
MS.gene59886.t1 AT1G77950 38.028 71 43 1 1 70 1 71 8.23e-12 62.0
MS.gene59886.t1 AT1G77950 38.028 71 43 1 1 70 1 71 8.23e-12 62.0
MS.gene59886.t1 AT1G77950 38.028 71 43 1 1 70 1 71 8.23e-12 62.0
MS.gene59886.t1 AT2G26320 44.828 58 32 0 1 58 17 74 1.86e-11 58.5
MS.gene59886.t1 AT1G77080 66.667 39 13 0 1 39 1 39 3.01e-11 59.3
MS.gene59886.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.15e-11 61.2
MS.gene59886.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.15e-11 61.2
MS.gene59886.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.15e-11 61.2
MS.gene59886.t1 AT1G77080 66.667 39 13 0 1 39 1 39 3.18e-11 59.3
MS.gene59886.t1 AT2G03060 50.943 53 26 0 1 53 1 53 3.27e-11 61.2
MS.gene59886.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.64e-11 58.2
MS.gene59886.t1 AT1G77080 66.667 39 13 0 1 39 1 39 6.70e-11 58.9

Find 49 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACAACAATAGCAATTT+TGG 0.202437 8.3:-53321848 None:intergenic
GGGAATAAACCTTACTCTTT+TGG 0.260036 8.3:+53321877 MS.gene59886:CDS
CCATCACCTTCTCATGTTGT+TGG 0.285658 8.3:-53321999 None:intergenic
TGTTAGAGGAAGGGGTTTCT+AGG 0.312060 8.3:-53321963 None:intergenic
AATGTGACTTGTCTCGCCTC+TGG 0.338519 8.3:-53321766 None:intergenic
ATTAATGGAGCTCAAGGATA+TGG 0.358058 8.3:+53322122 MS.gene59886:CDS
GGAATGGAAAGATTCATTAA+TGG 0.365090 8.3:+53322107 MS.gene59886:CDS
ATTCCTTAGGCTGGCTGAGT+AGG 0.404026 8.3:-53322089 None:intergenic
TTCTAGGACATTGTTTAGAT+CGG 0.405906 8.3:-53321947 None:intergenic
ACATTCTCAAAGCGCCGAAT+GGG 0.416565 8.3:+53321784 MS.gene59886:CDS
GTTCAGATCATCTATGTTAG+AGG 0.427003 8.3:-53321977 None:intergenic
GCTATTGTTGTATTCTCTCC+CGG 0.429351 8.3:+53321856 MS.gene59886:CDS
ATCATCTATGTTAGAGGAAG+GGG 0.438239 8.3:-53321971 None:intergenic
TCTAGGACATTGTTTAGATC+GGG 0.441264 8.3:-53321946 None:intergenic
AATCTTTCCATTCCTTAGGC+TGG 0.454254 8.3:-53322098 None:intergenic
AAAAGAGTAAGGTTTATTCC+CGG 0.457419 8.3:-53321875 None:intergenic
ATGTGACTTGTCTCGCCTCT+GGG 0.475748 8.3:-53321765 None:intergenic
TGATATAGCTGAGGCTGAAA+CGG 0.489733 8.3:+53322023 MS.gene59886:CDS
TTCCTTAGGCTGGCTGAGTA+GGG 0.493210 8.3:-53322088 None:intergenic
CACATTCTCAAAGCGCCGAA+TGG 0.503482 8.3:+53321783 MS.gene59886:CDS
CCAGGGTGGCCAAAAGAGTA+AGG 0.504633 8.3:-53321886 None:intergenic
CTCGCAAAGGAGCCCGTGGT+TGG 0.507286 8.3:+53322192 MS.gene59886:CDS
TATGCTAAAAGAATACAAAT+CGG 0.512468 8.3:+53322065 MS.gene59886:CDS
ACGAGCTTGCCATCTTGTGT+GGG 0.513990 8.3:+53321824 MS.gene59886:CDS
AATGAATCTTTCCATTCCTT+AGG 0.516915 8.3:-53322102 None:intergenic
AACGAGCTTGCCATCTTGTG+TGG 0.526962 8.3:+53321823 MS.gene59886:CDS
AGATTCATTAATGGAGCTCA+AGG 0.527990 8.3:+53322116 MS.gene59886:CDS
CTATTGTTGTATTCTCTCCC+GGG 0.529578 8.3:+53321857 MS.gene59886:CDS
TGAGGCTGAAACGGAAGATA+AGG 0.538982 8.3:+53322032 MS.gene59886:CDS
AACCAAGCCACAGAAAAGAA+AGG 0.541403 8.3:+53322222 MS.gene59886:CDS
GACGCAATAGCATCAACACC+AGG 0.542737 8.3:-53321904 None:intergenic
GGCCCTACTCAGCCAGCCTA+AGG 0.543600 8.3:+53322086 MS.gene59886:CDS
AAAGAGTAAGGTTTATTCCC+GGG 0.547640 8.3:-53321874 None:intergenic
ACAATTAACTCATTATGGGT+CGG 0.550393 8.3:+53321713 None:intergenic
TTCTATGATGCTCCTCGCAA+AGG 0.552874 8.3:+53322179 MS.gene59886:CDS
CAACCACGGGCTCCTTTGCG+AGG 0.553129 8.3:-53322191 None:intergenic
AGATCATCTATGTTAGAGGA+AGG 0.556275 8.3:-53321973 None:intergenic
GATCATCTATGTTAGAGGAA+GGG 0.557711 8.3:-53321972 None:intergenic
TACTCAGCCAGCCTAAGGAA+TGG 0.565385 8.3:+53322091 MS.gene59886:CDS
GCTCCTCGCAAAGGAGCCCG+TGG 0.600673 8.3:+53322188 MS.gene59886:CDS
TCTGAACCAACAACATGAGA+AGG 0.616384 8.3:+53321993 MS.gene59886:CDS
GCGCAAAATTGAGATTGCGA+TGG 0.644560 8.3:+53321735 MS.gene59886:CDS
AACGGAAGATAAGGCCAATG+AGG 0.644647 8.3:+53322041 MS.gene59886:CDS
CATTCTCAAAGCGCCGAATG+GGG 0.649352 8.3:+53321785 MS.gene59886:CDS
CGAGCTTGCCATCTTGTGTG+GGG 0.663768 8.3:+53321825 MS.gene59886:CDS
CCAACAACATGAGAAGGTGA+TGG 0.695579 8.3:+53321999 MS.gene59886:CDS
GGTGATGGCTGATATAGCTG+AGG 0.696275 8.3:+53322014 MS.gene59886:CDS
ACGCAATAGCATCAACACCA+GGG 0.722765 8.3:-53321903 None:intergenic
CAATAGCATCAACACCAGGG+TGG 0.755219 8.3:-53321900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTAAAAGAATACAAAT+CGG + chr8.3:53322065-53322084 MS.gene59886:CDS 20.0%
!! ATATTTTCCTTTCTTTTCTG+TGG - chr8.3:53322232-53322251 None:intergenic 25.0%
!! GAATACAACAATAGCAATTT+TGG - chr8.3:53321851-53321870 None:intergenic 25.0%
AAAAGAGTAAGGTTTATTCC+CGG - chr8.3:53321878-53321897 None:intergenic 30.0%
AATGAATCTTTCCATTCCTT+AGG - chr8.3:53322105-53322124 None:intergenic 30.0%
GGAATGGAAAGATTCATTAA+TGG + chr8.3:53322107-53322126 MS.gene59886:CDS 30.0%
! TTCTTTTAGCATATCCTCAT+TGG - chr8.3:53322058-53322077 None:intergenic 30.0%
!! TTCTAGGACATTGTTTAGAT+CGG - chr8.3:53321950-53321969 None:intergenic 30.0%
!! TTGGTTTTTAATTCCAACCA+CGG - chr8.3:53322208-53322227 None:intergenic 30.0%
!!! CTTTTTTGAATAACCCCATT+CGG - chr8.3:53321801-53321820 None:intergenic 30.0%
AAAGAGTAAGGTTTATTCCC+GGG - chr8.3:53321877-53321896 None:intergenic 35.0%
AGATCATCTATGTTAGAGGA+AGG - chr8.3:53321976-53321995 None:intergenic 35.0%
AGATTCATTAATGGAGCTCA+AGG + chr8.3:53322116-53322135 MS.gene59886:CDS 35.0%
ATCATCTATGTTAGAGGAAG+GGG - chr8.3:53321974-53321993 None:intergenic 35.0%
ATTAATGGAGCTCAAGGATA+TGG + chr8.3:53322122-53322141 MS.gene59886:CDS 35.0%
GATCATCTATGTTAGAGGAA+GGG - chr8.3:53321975-53321994 None:intergenic 35.0%
GTTCAGATCATCTATGTTAG+AGG - chr8.3:53321980-53321999 None:intergenic 35.0%
! GGGAATAAACCTTACTCTTT+TGG + chr8.3:53321877-53321896 MS.gene59886:CDS 35.0%
! TCTAGGACATTGTTTAGATC+GGG - chr8.3:53321949-53321968 None:intergenic 35.0%
!! TGGTTTTTAATTCCAACCAC+GGG - chr8.3:53322207-53322226 None:intergenic 35.0%
AACCAAGCCACAGAAAAGAA+AGG + chr8.3:53322222-53322241 MS.gene59886:CDS 40.0%
AATCTTTCCATTCCTTAGGC+TGG - chr8.3:53322101-53322120 None:intergenic 40.0%
CTATTGTTGTATTCTCTCCC+GGG + chr8.3:53321857-53321876 MS.gene59886:CDS 40.0%
GCTATTGTTGTATTCTCTCC+CGG + chr8.3:53321856-53321875 MS.gene59886:CDS 40.0%
TCTGAACCAACAACATGAGA+AGG + chr8.3:53321993-53322012 MS.gene59886:CDS 40.0%
TGATATAGCTGAGGCTGAAA+CGG + chr8.3:53322023-53322042 MS.gene59886:CDS 40.0%
! TTCCTTTCTTTTCTGTGGCT+TGG - chr8.3:53322227-53322246 None:intergenic 40.0%
AACGGAAGATAAGGCCAATG+AGG + chr8.3:53322041-53322060 MS.gene59886:CDS 45.0%
ACGCAATAGCATCAACACCA+GGG - chr8.3:53321906-53321925 None:intergenic 45.0%
CCAACAACATGAGAAGGTGA+TGG + chr8.3:53321999-53322018 MS.gene59886:CDS 45.0%
CCATCACCTTCTCATGTTGT+TGG - chr8.3:53322002-53322021 None:intergenic 45.0%
GCGCAAAATTGAGATTGCGA+TGG + chr8.3:53321735-53321754 MS.gene59886:CDS 45.0%
TGAGGCTGAAACGGAAGATA+AGG + chr8.3:53322032-53322051 MS.gene59886:CDS 45.0%
TGTTAGAGGAAGGGGTTTCT+AGG - chr8.3:53321966-53321985 None:intergenic 45.0%
TTCTATGATGCTCCTCGCAA+AGG + chr8.3:53322179-53322198 MS.gene59886:CDS 45.0%
!! AATTTTGGCCCCACACAAGA+TGG - chr8.3:53321836-53321855 None:intergenic 45.0%
!! ACATTCTCAAAGCGCCGAAT+GGG + chr8.3:53321784-53321803 MS.gene59886:CDS 45.0%
AACGAGCTTGCCATCTTGTG+TGG + chr8.3:53321823-53321842 MS.gene59886:CDS 50.0%
ACGAGCTTGCCATCTTGTGT+GGG + chr8.3:53321824-53321843 MS.gene59886:CDS 50.0%
CAATAGCATCAACACCAGGG+TGG - chr8.3:53321903-53321922 None:intergenic 50.0%
GACGCAATAGCATCAACACC+AGG - chr8.3:53321907-53321926 None:intergenic 50.0%
TACTCAGCCAGCCTAAGGAA+TGG + chr8.3:53322091-53322110 MS.gene59886:CDS 50.0%
TGCGATGGTGAAAAACCCAG+AGG + chr8.3:53321750-53321769 MS.gene59886:CDS 50.0%
! AATGTGACTTGTCTCGCCTC+TGG - chr8.3:53321769-53321788 None:intergenic 50.0%
! ATGTGACTTGTCTCGCCTCT+GGG - chr8.3:53321768-53321787 None:intergenic 50.0%
! ATTCCTTAGGCTGGCTGAGT+AGG - chr8.3:53322092-53322111 None:intergenic 50.0%
! GGTGATGGCTGATATAGCTG+AGG + chr8.3:53322014-53322033 MS.gene59886:CDS 50.0%
! TTCCTTAGGCTGGCTGAGTA+GGG - chr8.3:53322091-53322110 None:intergenic 50.0%
!! CACATTCTCAAAGCGCCGAA+TGG + chr8.3:53321783-53321802 MS.gene59886:CDS 50.0%
!! CATTCTCAAAGCGCCGAATG+GGG + chr8.3:53321785-53321804 MS.gene59886:CDS 50.0%
CCAGGGTGGCCAAAAGAGTA+AGG - chr8.3:53321889-53321908 None:intergenic 55.0%
CGAGCTTGCCATCTTGTGTG+GGG + chr8.3:53321825-53321844 MS.gene59886:CDS 55.0%
! CCTTACTCTTTTGGCCACCC+TGG + chr8.3:53321886-53321905 MS.gene59886:CDS 55.0%
CAACCACGGGCTCCTTTGCG+AGG - chr8.3:53322194-53322213 None:intergenic 65.0%
CTCGCAAAGGAGCCCGTGGT+TGG + chr8.3:53322192-53322211 MS.gene59886:CDS 65.0%
GGCCCTACTCAGCCAGCCTA+AGG + chr8.3:53322086-53322105 MS.gene59886:CDS 65.0%
GCTCCTCGCAAAGGAGCCCG+TGG + chr8.3:53322188-53322207 MS.gene59886:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 53321727 53322254 53321727 ID=MS.gene59886
chr8.3 mRNA 53321727 53322254 53321727 ID=MS.gene59886.t1;Parent=MS.gene59886
chr8.3 exon 53321727 53322254 53321727 ID=MS.gene59886.t1.exon1;Parent=MS.gene59886.t1
chr8.3 CDS 53321727 53322254 53321727 ID=cds.MS.gene59886.t1;Parent=MS.gene59886.t1
Gene Sequence

>MS.gene59886

ATGGGTCGGCGCAAAATTGAGATTGCGATGGTGAAAAACCCAGAGGCGAGACAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGGCCAAAATTGCTATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTGGTGTTGATGCTATTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACAATGTCCTAGAAACCCCTTCCTCTAACATAGATGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAACGGAAGATAAGGCCAATGAGGATATGCTAAAAGAATACAAATCGGCCCTACTCAGCCAGCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTCGTGATTTAGATATATCAGATTCTATGATGCTCCTCGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAGCCACAGAAAAGAAAGGAAAATATTAA
Protein sequence

>MS.gene59886.t1

MGRRKIEIAMVKNPEARQVTFSKRRMGLFKKANELAILCGAKIAIVVFSPGNKPYSFGHPGVDAIASKFLQQEPDLNNVLETPSSNIDDLNQQHEKVMADIAEAETEDKANEDMLKEYKSALLSQPKEWKDSLMELKDMVKSRLRDLDISDSMMLLAKEPVVGIKNQATEKKGKY