AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60003

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60003.t1 MTR_7g005280 85.294 102 14 1 21 121 59 160 6.02e-59 182
MS.gene60003.t1 MTR_7g070140 84.524 84 13 0 29 112 19 102 3.41e-48 151
MS.gene60003.t1 MTR_7g070150 96.429 56 2 0 66 121 2 57 2.46e-36 119
MS.gene60003.t1 MTR_4g035590 60.638 94 33 3 29 121 66 156 1.93e-32 117
MS.gene60003.t1 MTR_7g097090 57.143 91 38 1 29 119 65 154 6.92e-32 114
MS.gene60003.t1 MTR_3g064580 60.606 99 33 4 28 122 62 158 7.26e-32 118
MS.gene60003.t1 MTR_1g008740 58.333 96 38 1 29 122 83 178 1.07e-31 115
MS.gene60003.t1 MTR_1g008740 58.333 96 38 1 29 122 69 164 1.09e-31 114
MS.gene60003.t1 MTR_1g069805 56.989 93 39 1 29 121 65 156 1.12e-31 113
MS.gene60003.t1 MTR_2157s0010 54.206 107 36 3 29 122 63 169 2.48e-31 112
MS.gene60003.t1 MTR_1g096430 59.574 94 35 3 29 121 65 156 3.63e-31 113
MS.gene60003.t1 MTR_3g109340 55.789 95 41 1 29 122 77 171 5.10e-31 113
MS.gene60003.t1 MTR_3g109340 55.208 96 41 1 29 122 77 172 8.31e-31 112
MS.gene60003.t1 MTR_2g064090 52.525 99 41 2 28 122 62 158 1.01e-30 112
MS.gene60003.t1 MTR_4g036030 55.319 94 39 2 29 121 65 156 1.16e-30 112
MS.gene60003.t1 MTR_4g081870 56.000 100 35 3 29 121 64 161 1.26e-30 110
MS.gene60003.t1 MTR_4g089135 49.167 120 35 2 29 122 70 189 2.43e-30 111
MS.gene60003.t1 MTR_2g062730 55.319 94 40 2 29 121 68 160 2.81e-30 110
MS.gene60003.t1 MTR_8g076110 54.255 94 40 2 29 121 64 155 3.30e-30 110
MS.gene60003.t1 MTR_5g021710 54.255 94 40 2 29 121 66 157 3.85e-30 110
MS.gene60003.t1 MTR_2g078700 52.525 99 42 1 29 122 78 176 1.31e-29 109
MS.gene60003.t1 MTR_6g032770 50.505 99 44 1 29 122 73 171 1.51e-29 109
MS.gene60003.t1 MTR_2g080010 50.926 108 39 2 29 122 70 177 2.45e-29 108
MS.gene60003.t1 MTR_5g076850 56.122 98 38 4 28 122 62 157 2.84e-29 110
MS.gene60003.t1 MTR_8g024480 52.427 103 35 2 31 121 75 175 4.00e-29 109
MS.gene60003.t1 MTR_5g012080 50.515 97 45 2 27 121 63 158 5.67e-29 107
MS.gene60003.t1 MTR_4g108760 53.535 99 39 3 29 122 72 168 6.34e-29 107
MS.gene60003.t1 MTR_7g085220 49.541 109 39 3 29 122 63 170 7.61e-29 107
MS.gene60003.t1 MTR_4g101680 55.435 92 38 2 31 121 67 156 7.70e-29 107
MS.gene60003.t1 MTR_5g041940 53.000 100 38 2 29 121 58 155 7.99e-29 105
MS.gene60003.t1 MTR_2g079990 55.670 97 38 2 29 122 71 165 9.16e-29 107
MS.gene60003.t1 MTR_8g099750 48.624 109 43 3 22 121 63 167 1.04e-28 104
MS.gene60003.t1 MTR_6g084430 53.684 95 41 2 29 122 60 152 2.19e-28 105
MS.gene60003.t1 MTR_3g116070 56.098 82 36 0 29 110 79 160 4.06e-28 105
MS.gene60003.t1 MTR_7g100990 51.546 97 40 2 29 118 66 162 5.73e-28 104
MS.gene60003.t1 MTR_3g070030 54.639 97 36 3 31 121 76 170 1.08e-27 104
MS.gene60003.t1 MTR_3g088110 54.545 99 36 3 29 121 62 157 1.18e-27 103
MS.gene60003.t1 MTR_6g477900 49.485 97 44 2 29 122 63 157 1.58e-27 101
MS.gene60003.t1 MTR_8g094580 53.000 100 37 3 29 121 8 104 1.79e-27 101
MS.gene60003.t1 MTR_2g064470 49.485 97 43 2 29 121 64 158 2.19e-27 102
MS.gene60003.t1 MTR_3g435150 42.857 133 62 4 2 122 37 167 2.73e-27 102
MS.gene60003.t1 MTR_2g093810 49.485 97 42 1 29 118 69 165 4.80e-27 102
MS.gene60003.t1 MTR_8g094580 53.000 100 37 3 29 121 62 158 6.68e-27 100
MS.gene60003.t1 MTR_3g096920 53.535 99 37 3 29 121 62 157 6.72e-27 101
MS.gene60003.t1 MTR_3g098810 53.922 102 36 2 31 121 69 170 6.74e-27 100
MS.gene60003.t1 MTR_6g012670 49.495 99 43 2 29 122 75 171 7.95e-27 101
MS.gene60003.t1 MTR_8g059170 54.082 98 38 3 29 121 69 164 8.16e-27 101
MS.gene60003.t1 MTR_3g093050 52.083 96 41 2 29 121 79 172 1.12e-26 103
MS.gene60003.t1 MTR_3g093050 52.083 96 41 2 29 121 79 172 1.21e-26 103
MS.gene60003.t1 MTR_7g085260 51.485 101 42 3 29 122 72 172 1.45e-26 101
MS.gene60003.t1 MTR_2g079990 60.759 79 29 1 29 107 71 147 1.56e-26 101
MS.gene60003.t1 MTR_1g090723 50.000 98 44 2 28 122 65 160 2.10e-26 102
MS.gene60003.t1 MTR_0036s0150 50.515 97 44 2 28 122 62 156 2.45e-26 102
MS.gene60003.t1 MTR_5g069030 53.125 96 40 2 29 121 82 175 2.52e-26 102
MS.gene60003.t1 MTR_3g093040 48.958 96 44 2 29 121 165 258 3.41e-26 99.8
MS.gene60003.t1 MTR_1g090723 49.485 97 45 2 28 122 65 159 4.83e-26 101
MS.gene60003.t1 MTR_1g090723 49.485 97 45 2 28 122 65 159 6.36e-26 101
MS.gene60003.t1 MTR_7g011130 58.904 73 28 1 29 101 74 144 7.82e-26 99.4
MS.gene60003.t1 MTR_8g063550 47.423 97 46 2 28 121 62 156 2.08e-25 99.0
MS.gene60003.t1 MTR_8g063550 47.423 97 46 2 28 121 62 156 5.45e-25 98.2
MS.gene60003.t1 MTR_5g040420 43.810 105 48 1 29 122 69 173 1.12e-24 96.7
MS.gene60003.t1 MTR_5g014300 45.455 99 49 1 28 121 62 160 1.73e-24 95.5
MS.gene60003.t1 MTR_3g070040 45.045 111 46 3 21 121 52 157 2.44e-24 95.1
MS.gene60003.t1 MTR_3g096920 60.000 75 27 1 29 103 62 133 3.38e-24 94.7
MS.gene60003.t1 MTR_7g011120 47.619 105 41 3 29 121 63 165 3.43e-24 94.4
MS.gene60003.t1 MTR_8g467490 42.453 106 49 1 29 122 69 174 3.95e-24 95.1
MS.gene60003.t1 MTR_8g063550 47.423 97 46 2 28 121 62 156 4.63e-24 94.4
MS.gene60003.t1 MTR_4g075980 45.263 95 49 2 29 122 70 162 5.64e-24 93.6
MS.gene60003.t1 MTR_3g098810 56.627 83 34 1 31 111 69 151 1.16e-23 90.1
MS.gene60003.t1 MTR_4g098630 47.959 98 47 2 28 121 62 159 4.56e-23 91.7
MS.gene60003.t1 MTR_8g093580 45.361 97 48 2 28 121 62 156 5.84e-23 92.8
MS.gene60003.t1 MTR_3g096140 48.980 98 43 3 28 121 63 157 8.74e-23 90.1
MS.gene60003.t1 MTR_5g090970 45.192 104 44 3 29 119 72 175 1.59e-22 90.1
MS.gene60003.t1 MTR_5g090970 45.192 104 44 3 29 119 73 176 1.64e-22 89.7
MS.gene60003.t1 MTR_3g096140 48.980 98 43 3 28 121 42 136 2.43e-22 89.7
MS.gene60003.t1 MTR_3g096140 48.980 98 43 3 28 121 63 157 2.99e-22 89.7
MS.gene60003.t1 MTR_1g097300 56.757 74 28 2 29 101 76 146 5.61e-22 90.1
MS.gene60003.t1 MTR_6g011860 42.453 106 48 3 29 122 70 174 1.19e-21 88.6
MS.gene60003.t1 MTR_2g068880 45.794 107 42 3 29 119 78 184 1.22e-21 87.4
MS.gene60003.t1 MTR_4g134460 47.826 92 46 2 29 119 109 199 4.14e-21 87.4
MS.gene60003.t1 MTR_2g068920 44.860 107 43 3 29 119 77 183 8.01e-21 85.1
MS.gene60003.t1 MTR_2g086880 45.556 90 43 2 29 118 74 157 1.93e-20 85.9
MS.gene60003.t1 MTR_2g086880 45.556 90 43 2 29 118 74 157 2.45e-20 85.5
MS.gene60003.t1 MTR_1g090720 47.573 103 41 3 29 121 99 198 2.78e-20 85.1
MS.gene60003.t1 MTR_8g023840 45.556 90 46 2 29 118 69 155 1.06e-19 83.2
MS.gene60003.t1 MTR_2g086690 40.000 100 53 3 29 122 65 163 3.41e-17 74.7
MS.gene60003.t1 MTR_4g052620 42.000 100 51 3 29 122 65 163 1.10e-16 73.6
MS.gene60003.t1 MTR_7g105170 37.000 100 54 3 31 122 67 165 2.19e-16 72.8
MS.gene60003.t1 MTR_4g094302 40.964 83 40 1 46 119 75 157 5.06e-16 70.5
MS.gene60003.t1 MTR_4g094302 50.000 56 28 0 46 101 75 130 2.04e-15 68.6
MS.gene60003.t1 MTR_8g023900 39.785 93 53 2 29 121 251 340 4.11e-15 70.5
MS.gene60003.t1 MTR_8g023900 33.628 113 61 2 10 122 64 162 1.77e-13 65.9
MS.gene60003.t1 MTR_8g023860 36.667 90 54 2 29 118 70 156 1.61e-14 68.6
MS.gene60003.t1 MTR_8g023930 37.234 94 56 2 29 122 82 172 4.95e-13 64.3
MS.gene60003.t1 MTR_8g023880 46.575 73 30 3 50 121 100 164 1.20e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60003.t1 AT2G33480 66.346 104 26 3 21 121 6 103 7.10e-45 145
MS.gene60003.t1 AT5G13180 70.526 95 26 1 29 121 66 160 1.89e-44 145
MS.gene60003.t1 AT2G33480 67.647 102 26 3 21 121 63 158 3.61e-44 145
MS.gene60003.t1 AT2G33480 66.346 104 26 3 21 121 63 160 7.93e-44 144
MS.gene60003.t1 AT1G33280 51.887 106 49 1 16 121 53 156 2.67e-34 120
MS.gene60003.t1 AT2G24430 59.375 96 37 1 29 122 71 166 6.11e-34 120
MS.gene60003.t1 AT2G24430 59.375 96 37 1 29 122 71 166 6.11e-34 120
MS.gene60003.t1 AT4G10350 57.292 96 36 2 29 121 20 113 6.75e-34 119
MS.gene60003.t1 AT4G10350 51.376 109 48 2 16 121 54 160 1.71e-33 119
MS.gene60003.t1 AT5G62380 58.511 94 36 2 29 121 65 156 1.69e-31 114
MS.gene60003.t1 AT5G62380 58.511 94 36 2 29 121 65 156 1.69e-31 114
MS.gene60003.t1 AT1G62700 56.383 94 38 2 29 121 65 156 4.95e-31 114
MS.gene60003.t1 AT1G62700 56.383 94 38 2 29 121 65 156 4.95e-31 114
MS.gene60003.t1 AT5G61430 55.556 99 37 3 29 122 8 104 9.76e-31 110
MS.gene60003.t1 AT3G18400 57.292 96 37 3 29 122 60 153 1.14e-30 111
MS.gene60003.t1 AT1G76420 53.125 96 43 1 29 122 77 172 1.51e-30 111
MS.gene60003.t1 AT4G36160 55.208 96 40 2 27 121 66 159 1.66e-30 112
MS.gene60003.t1 AT4G36160 55.208 96 40 2 27 121 66 159 1.66e-30 112
MS.gene60003.t1 AT4G36160 55.208 96 40 2 27 121 70 163 1.73e-30 112
MS.gene60003.t1 AT3G15170 50.505 99 44 1 29 122 75 173 2.40e-30 110
MS.gene60003.t1 AT1G12260 55.435 92 38 2 31 121 67 156 3.31e-30 110
MS.gene60003.t1 AT5G61430 55.556 99 37 3 29 122 71 167 3.34e-30 110
MS.gene60003.t1 AT4G28530 54.839 93 41 1 29 121 81 172 5.08e-30 110
MS.gene60003.t1 AT2G18060 56.383 94 38 3 29 121 67 158 5.72e-30 110
MS.gene60003.t1 AT2G18060 56.383 94 38 3 29 121 67 158 5.72e-30 110
MS.gene60003.t1 AT1G12260 55.435 92 38 2 31 121 67 156 6.86e-30 110
MS.gene60003.t1 AT1G65910 55.102 98 39 3 28 122 62 157 7.19e-30 112
MS.gene60003.t1 AT4G27410 55.670 97 38 2 29 122 69 163 1.02e-29 108
MS.gene60003.t1 AT5G66300 55.208 96 37 3 29 121 70 162 1.03e-29 108
MS.gene60003.t1 AT5G07680 54.545 99 38 3 29 122 58 154 1.06e-29 108
MS.gene60003.t1 AT1G71930 49.533 107 51 2 16 121 54 158 1.30e-29 108
MS.gene60003.t1 AT1G71930 49.533 107 51 2 16 121 54 158 1.30e-29 108
MS.gene60003.t1 AT5G07680 54.545 99 38 3 29 122 72 168 1.43e-29 108
MS.gene60003.t1 AT4G27410 55.670 97 38 2 29 122 86 180 1.82e-29 108
MS.gene60003.t1 AT1G79580 53.763 93 42 1 29 121 75 166 1.84e-29 109
MS.gene60003.t1 AT1G79580 53.763 93 42 1 29 121 75 166 1.84e-29 109
MS.gene60003.t1 AT1G79580 53.763 93 42 1 29 121 75 166 1.84e-29 109
MS.gene60003.t1 AT1G79580 53.763 93 42 1 29 121 75 166 1.84e-29 109
MS.gene60003.t1 AT1G79580 53.763 93 42 1 29 121 75 166 1.84e-29 109
MS.gene60003.t1 AT4G35580 56.250 96 37 2 29 121 66 159 2.14e-29 110
MS.gene60003.t1 AT4G35580 56.250 96 37 2 29 121 66 159 2.23e-29 110
MS.gene60003.t1 AT4G35580 56.250 96 37 2 29 121 66 159 2.23e-29 110
MS.gene60003.t1 AT3G12977 54.639 97 38 3 29 121 20 114 2.86e-29 105
MS.gene60003.t1 AT1G77450 54.545 99 36 3 29 121 65 160 3.24e-29 106
MS.gene60003.t1 AT5G18270 54.082 98 39 2 29 121 76 172 3.32e-29 108
MS.gene60003.t1 AT5G18270 54.082 98 39 2 29 121 76 172 3.32e-29 108
MS.gene60003.t1 AT1G69490 55.000 100 36 2 29 121 64 161 3.39e-29 106
MS.gene60003.t1 AT3G15510 50.467 107 39 2 29 121 72 178 3.93e-29 108
MS.gene60003.t1 AT1G54330 54.255 94 41 1 28 121 62 153 5.54e-29 106
MS.gene60003.t1 AT3G04070 53.271 107 37 3 29 122 65 171 7.13e-29 107
MS.gene60003.t1 AT5G53950 51.515 99 43 1 29 122 72 170 1.25e-28 107
MS.gene60003.t1 AT5G46590 51.020 98 43 2 28 121 62 158 1.51e-28 105
MS.gene60003.t1 AT3G12977 54.639 97 38 3 29 121 73 167 1.75e-28 105
MS.gene60003.t1 AT5G39610 51.020 98 41 2 29 121 75 170 1.84e-28 105
MS.gene60003.t1 AT3G17730 51.042 96 42 3 29 121 63 156 2.09e-28 103
MS.gene60003.t1 AT1G61110 51.852 108 36 3 29 121 71 177 2.68e-28 105
MS.gene60003.t1 AT2G46770 49.533 107 36 2 31 121 76 180 4.56e-28 105
MS.gene60003.t1 AT1G56010 50.515 97 40 2 31 121 10 104 7.33e-28 102
MS.gene60003.t1 AT3G04060 55.102 98 38 3 29 121 75 171 8.43e-28 104
MS.gene60003.t1 AT5G08790 53.465 101 36 3 29 121 62 159 8.63e-28 103
MS.gene60003.t1 AT1G33060 53.125 96 40 2 29 121 81 174 1.23e-27 106
MS.gene60003.t1 AT1G33060 53.125 96 40 2 29 121 81 174 1.24e-27 106
MS.gene60003.t1 AT5G63790 53.465 101 36 3 29 121 105 202 1.86e-27 103
MS.gene60003.t1 AT1G56010 50.515 97 40 2 31 121 77 171 2.12e-27 103
MS.gene60003.t1 AT5G63790 53.465 101 36 3 29 121 115 212 2.35e-27 102
MS.gene60003.t1 AT1G32770 49.038 104 38 3 31 121 76 177 2.43e-27 103
MS.gene60003.t1 AT5G04410 52.041 98 42 2 28 122 65 160 2.46e-27 105
MS.gene60003.t1 AT3G15500 53.125 96 40 2 29 121 69 162 4.17e-27 102
MS.gene60003.t1 AT5G17260 50.515 97 42 2 29 121 63 157 4.27e-27 104
MS.gene60003.t1 AT1G52890 53.125 96 40 2 29 121 69 162 4.53e-27 102
MS.gene60003.t1 AT3G03200 50.515 97 42 2 29 121 63 157 5.26e-27 103
MS.gene60003.t1 AT3G04070 47.154 123 36 3 29 122 65 187 7.90e-27 102
MS.gene60003.t1 AT1G01720 53.000 100 37 3 29 121 62 158 8.52e-27 100
MS.gene60003.t1 AT3G61910 48.148 108 38 3 31 122 71 176 1.01e-26 101
MS.gene60003.t1 AT3G10480 51.546 97 41 2 29 121 84 178 3.09e-26 101
MS.gene60003.t1 AT3G10480 51.546 97 41 2 29 121 117 211 4.04e-26 101
MS.gene60003.t1 AT3G10500 51.020 98 43 2 28 122 65 160 5.84e-26 101
MS.gene60003.t1 AT3G10490 50.000 98 43 2 29 122 84 179 6.53e-26 97.4
MS.gene60003.t1 AT5G46590 50.588 85 41 1 28 112 62 145 7.12e-26 98.2
MS.gene60003.t1 AT3G29035 60.274 73 27 1 29 101 79 149 2.58e-25 97.4
MS.gene60003.t1 AT2G17040 45.283 106 52 3 21 122 50 153 3.58e-25 96.3
MS.gene60003.t1 AT3G10480 51.042 96 42 2 29 121 84 177 4.02e-25 98.6
MS.gene60003.t1 AT4G17980 46.465 99 48 1 28 121 62 160 8.29e-25 95.1
MS.gene60003.t1 AT3G49530 47.917 96 46 2 29 121 70 164 1.25e-24 97.1
MS.gene60003.t1 AT3G10490 50.000 98 43 2 29 122 84 179 1.37e-24 97.1
MS.gene60003.t1 AT4G17980 55.405 74 33 0 28 101 62 135 1.73e-24 94.7
MS.gene60003.t1 AT1G52880 51.402 107 39 3 29 122 72 178 2.40e-24 95.1
MS.gene60003.t1 AT3G49530 47.917 96 46 2 29 121 70 164 3.02e-24 96.3
MS.gene60003.t1 AT5G24590 49.000 100 39 3 29 121 70 164 4.12e-24 95.9
MS.gene60003.t1 AT3G12910 43.636 110 46 3 26 119 74 183 1.04e-22 90.5
MS.gene60003.t1 AT2G02450 48.913 92 45 2 29 119 106 196 1.80e-22 90.5
MS.gene60003.t1 AT1G34190 47.475 99 43 4 29 122 73 167 1.81e-22 91.7
MS.gene60003.t1 AT2G02450 48.913 92 45 2 29 119 106 196 2.22e-22 90.9
MS.gene60003.t1 AT5G64060 41.905 105 56 2 20 121 54 156 2.74e-22 90.1
MS.gene60003.t1 AT1G32510 46.000 100 45 2 28 118 62 161 3.10e-22 89.0
MS.gene60003.t1 AT1G34180 55.405 74 29 2 29 101 85 155 6.50e-22 90.1
MS.gene60003.t1 AT1G34180 55.405 74 29 2 29 101 85 155 7.97e-22 89.4
MS.gene60003.t1 AT1G34180 55.405 74 29 2 29 101 73 143 8.81e-22 89.7
MS.gene60003.t1 AT1G34180 55.405 74 29 2 29 101 73 143 1.07e-21 89.0
MS.gene60003.t1 AT5G39820 38.983 118 48 2 29 122 75 192 1.78e-21 87.4
MS.gene60003.t1 AT1G26870 41.509 106 50 2 29 122 71 176 2.19e-21 88.2
MS.gene60003.t1 AT2G43000 46.316 95 45 3 29 119 73 165 1.01e-20 84.7
MS.gene60003.t1 AT5G09330 45.361 97 48 2 28 121 62 156 1.37e-20 85.9
MS.gene60003.t1 AT5G09330 45.361 97 48 2 28 121 62 156 1.37e-20 85.9
MS.gene60003.t1 AT5G09330 45.361 97 48 2 28 121 62 156 1.37e-20 85.9
MS.gene60003.t1 AT5G09330 45.361 97 48 2 28 121 62 156 1.37e-20 85.9
MS.gene60003.t1 AT5G09330 45.361 97 48 2 28 121 62 156 1.37e-20 85.9
MS.gene60003.t1 AT5G22290 44.444 90 45 2 29 118 77 161 1.98e-20 84.7
MS.gene60003.t1 AT2G18060 53.521 71 30 3 52 121 2 70 9.10e-20 82.0
MS.gene60003.t1 AT4G01540 51.316 76 36 1 28 102 62 137 1.96e-19 82.4
MS.gene60003.t1 AT4G01540 51.316 76 36 1 28 102 62 137 2.06e-19 82.8
MS.gene60003.t1 AT4G01540 51.316 76 36 1 28 102 62 137 2.06e-19 82.4
MS.gene60003.t1 AT2G27300 43.333 90 45 2 29 118 70 153 2.66e-19 81.6
MS.gene60003.t1 AT3G10490 50.000 80 34 2 47 122 2 79 2.68e-19 81.6
MS.gene60003.t1 AT3G10490 50.000 80 34 2 47 122 2 79 2.68e-19 81.6
MS.gene60003.t1 AT4G01540 51.316 76 36 1 28 102 62 137 2.88e-19 82.0
MS.gene60003.t1 AT4G01520 50.000 76 37 1 28 102 62 137 3.24e-19 80.9
MS.gene60003.t1 AT3G44290 42.222 90 46 2 29 118 70 153 4.23e-19 79.3
MS.gene60003.t1 AT3G44290 42.222 90 46 2 29 118 70 153 1.01e-18 80.1
MS.gene60003.t1 AT2G43000 47.059 85 39 3 39 119 5 87 3.45e-18 76.6
MS.gene60003.t1 AT4G01550 41.304 92 51 2 31 121 64 153 6.09e-17 75.9
MS.gene60003.t1 AT3G44350 38.182 110 58 3 17 122 58 161 1.15e-16 73.2
MS.gene60003.t1 AT1G32870 53.521 71 29 3 31 101 69 135 1.84e-16 74.3
MS.gene60003.t1 AT1G32870 54.930 71 28 3 31 101 69 135 1.88e-16 74.3
MS.gene60003.t1 AT1G32870 54.930 71 28 3 31 101 105 171 1.94e-16 74.3
MS.gene60003.t1 AT5G22380 35.135 111 61 3 15 120 57 161 1.70e-15 70.1
MS.gene60003.t1 AT5G04395 45.333 75 40 1 29 102 96 170 3.76e-15 68.2
MS.gene60003.t1 AT3G04420 41.111 90 49 2 32 121 65 150 3.97e-15 69.7
MS.gene60003.t1 AT3G04420 41.111 90 49 2 32 121 65 150 4.49e-15 70.1
MS.gene60003.t1 AT3G44350 40.000 90 48 2 17 106 58 141 5.50e-15 67.4
MS.gene60003.t1 AT1G02230 42.391 92 48 3 31 121 64 151 1.55e-14 68.6
MS.gene60003.t1 AT1G02250 41.304 92 49 3 31 121 64 151 3.42e-13 64.7
MS.gene60003.t1 AT5G22290 45.455 66 31 2 53 118 2 62 3.64e-13 63.9
MS.gene60003.t1 AT1G02220 44.118 68 33 2 32 99 65 127 3.13e-11 59.3
MS.gene60003.t1 AT4G28530 47.368 57 30 0 29 85 81 137 7.25e-11 58.2

Find 24 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTAGATCGGTTCCCATT+TGG 0.335676 6.1:-72398516 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.345872 6.1:+72398538 MS.gene60003:CDS
TCGGTTCCCATTTGGATACT+TGG 0.352516 6.1:-72398508 None:intergenic
TTACTGGAAGGCAACTGGTT+TGG 0.413426 6.1:+72398554 MS.gene60003:CDS
AAAGAATCCAAGTATCCAAA+TGG 0.424681 6.1:+72398501 MS.gene60003:CDS
TCAAAGACTCGTGAAGTTGT+TGG 0.433785 6.1:+72398594 MS.gene60003:CDS
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 6.1:+72398549 MS.gene60003:CDS
TGCAGAATGAAAATTGGGTT+CGG 0.450439 6.1:+72398807 MS.gene60003:intron
CTGCGATGCTGCTACTAGAT+TGG 0.477430 6.1:+72398190 MS.gene60003:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 6.1:+72398701 MS.gene60003:CDS
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 6.1:-72398695 None:intergenic
AGAAATACTGACCAAGGGGT+TGG 0.525245 6.1:-72398712 None:intergenic
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 6.1:-72398527 None:intergenic
CGCATATTTCTGAAGAGTTG+AGG 0.538473 6.1:+72398833 MS.gene60003:CDS
TTCGTAGTGATGATGCAATA+CGG 0.541142 6.1:+72398156 MS.gene60003:CDS
AAGAATCCAAGTATCCAAAT+GGG 0.544681 6.1:+72398502 MS.gene60003:CDS
CTCATGGTTCAAGAACTGAT+TGG 0.548704 6.1:+72398655 MS.gene60003:CDS
TCTAACAGAGCTACAAACTC+TGG 0.560803 6.1:+72398531 MS.gene60003:CDS
GACCAAGGGGTTGGAGTGAG+AGG 0.562631 6.1:-72398703 None:intergenic
TATTGCATCATCACTACGAA+TGG 0.584473 6.1:-72398153 None:intergenic
TACAGAGGGAAACCACCTCA+TGG 0.609880 6.1:+72398639 MS.gene60003:CDS
TCAGTTCTTGAACCATGAGG+TGG 0.615010 6.1:-72398651 None:intergenic
TACAAACTCTGGTTACTGGA+AGG 0.635081 6.1:+72398542 MS.gene60003:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 6.1:-72398654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAATATGAATGAAT+TGG + chr6.1:72398780-72398799 MS.gene60003:intron 10.0%
!! GATTTTGCAGAATGAAAATT+GGG + chr6.1:72398802-72398821 MS.gene60003:intron 25.0%
!!! ATTGACATTTTTGTTGTTTC+TGG - chr6.1:72398310-72398329 None:intergenic 25.0%
AAAGAATCCAAGTATCCAAA+TGG + chr6.1:72398501-72398520 MS.gene60003:CDS 30.0%
AAGAAAGAAATACTGACCAA+GGG - chr6.1:72398720-72398739 None:intergenic 30.0%
AAGAATCCAAGTATCCAAAT+GGG + chr6.1:72398502-72398521 MS.gene60003:CDS 30.0%
GATTTATTGTGATCAATGCA+AGG - chr6.1:72398384-72398403 None:intergenic 30.0%
TTGCAAATTCAGACAAAGAA+AGG - chr6.1:72398743-72398762 None:intergenic 30.0%
TTTCATGCTACCAAATAACA+GGG + chr6.1:72398248-72398267 MS.gene60003:intron 30.0%
! AAAACTCATGTTTTCTACAG+AGG + chr6.1:72398624-72398643 MS.gene60003:CDS 30.0%
! AAACTCATGTTTTCTACAGA+GGG + chr6.1:72398625-72398644 MS.gene60003:CDS 30.0%
! ATCTACAGATGATGCATTTT+CGG - chr6.1:72398352-72398371 None:intergenic 30.0%
! GGATTTTGCAGAATGAAAAT+TGG + chr6.1:72398801-72398820 MS.gene60003:intron 30.0%
!!! GAGTTTTTTTCCCTGTTATT+TGG - chr6.1:72398261-72398280 None:intergenic 30.0%
AGAAAGAAATACTGACCAAG+GGG - chr6.1:72398719-72398738 None:intergenic 35.0%
GAAGAAAGAAATACTGACCA+AGG - chr6.1:72398721-72398740 None:intergenic 35.0%
GTTTCATGCTACCAAATAAC+AGG + chr6.1:72398247-72398266 MS.gene60003:intron 35.0%
TATTGCATCATCACTACGAA+TGG - chr6.1:72398156-72398175 None:intergenic 35.0%
TGCAGAATGAAAATTGGGTT+CGG + chr6.1:72398807-72398826 MS.gene60003:intron 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - chr6.1:72398530-72398549 None:intergenic 35.0%
! TGAGTGTGTGTTGTTCTATT+AGG + chr6.1:72398458-72398477 MS.gene60003:intron 35.0%
! TTCGTAGTGATGATGCAATA+CGG + chr6.1:72398156-72398175 MS.gene60003:CDS 35.0%
CAATCAGTTCTTGAACCATG+AGG - chr6.1:72398657-72398676 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr6.1:72398655-72398674 MS.gene60003:CDS 40.0%
TACAAACTCTGGTTACTGGA+AGG + chr6.1:72398542-72398561 MS.gene60003:CDS 40.0%
TCAAAGACTCGTGAAGTTGT+TGG + chr6.1:72398594-72398613 MS.gene60003:CDS 40.0%
TCTAACAGAGCTACAAACTC+TGG + chr6.1:72398531-72398550 MS.gene60003:CDS 40.0%
AGAAATACTGACCAAGGGGT+TGG - chr6.1:72398715-72398734 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr6.1:72398538-72398557 MS.gene60003:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr6.1:72398654-72398673 None:intergenic 45.0%
TCGGTTCCCATTTGGATACT+TGG - chr6.1:72398511-72398530 None:intergenic 45.0%
TTACTGGAAGGCAACTGGTT+TGG + chr6.1:72398554-72398573 MS.gene60003:CDS 45.0%
! CTGTTAGATCGGTTCCCATT+TGG - chr6.1:72398519-72398538 None:intergenic 45.0%
CTGCGATGCTGCTACTAGAT+TGG + chr6.1:72398190-72398209 MS.gene60003:CDS 50.0%
TACAGAGGGAAACCACCTCA+TGG + chr6.1:72398639-72398658 MS.gene60003:CDS 50.0%
TCTGGTTACTGGAAGGCAAC+TGG + chr6.1:72398549-72398568 MS.gene60003:CDS 50.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr6.1:72398698-72398717 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr6.1:72398701-72398720 MS.gene60003:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr6.1:72398706-72398725 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 72398128 72398853 72398128 ID=MS.gene60003
chr6.1 mRNA 72398128 72398853 72398128 ID=MS.gene60003.t1;Parent=MS.gene60003
chr6.1 exon 72398128 72398211 72398128 ID=MS.gene60003.t1.exon1;Parent=MS.gene60003.t1
chr6.1 CDS 72398128 72398211 72398128 ID=cds.MS.gene60003.t1;Parent=MS.gene60003.t1
chr6.1 exon 72398480 72398722 72398480 ID=MS.gene60003.t1.exon2;Parent=MS.gene60003.t1
chr6.1 CDS 72398480 72398722 72398480 ID=cds.MS.gene60003.t1;Parent=MS.gene60003.t1
chr6.1 exon 72398812 72398853 72398812 ID=MS.gene60003.t1.exon3;Parent=MS.gene60003.t1
chr6.1 CDS 72398812 72398853 72398812 ID=cds.MS.gene60003.t1;Parent=MS.gene60003.t1
Gene Sequence

>MS.gene60003

ATGAAACTGCATGAAACGAATATCTCCATTCGTAGTGATGATGCAATACGGACACGAAAAGACTGCGATGCTGCTACTAGATTGGTATAAGTTTTATTTACTTTGTGATTAAATATGTAGTTTCATGCTACCAAATAACAGGGAAAAAAACTCTTGAAGTGAACAATTTTCTAGCATTTCCAGAAACAACAAAAATGTCAATATAACTGTTTTCATTATTTCCGAAAATGCATCATCTGTAGATAACAAATTACCTTGCATTGATCACAATAAATCACTTCAAAAGTCTCTCTTCTTCTTATTATCATGTTAAAATAAATAGAATTAATTTGAGTGTGTGTTGTTCTATTAGGAGATGTACTTTTTCAGTACTAAAGAATCCAAGTATCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAACAAATCACGAATTCAAAGACTCGTGAAGTTGTTGGTATGAAGAAAACTCATGTTTTCTACAGAGGGAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTATTTCTTTCTTCCTTTCTTTGTCTGAATTTGCAATTAAGAATTTAGTCTTGTAATATTAATATGAATGAATTGGATTTTGCAGAATGAAAATTGGGTTCGGTGTCGCATATTTCTGAAGAGTTGA
Protein sequence

>MS.gene60003.t1

MKLHETNISIRSDDAIRTRKDCDAATRLEMYFFSTKESKYPNGNRSNRATNSGYWKATGLDKQITNSKTREVVGMKKTHVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVRCRIFLKS