Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60121.t1 | XP_003627845.1 | 97.2 | 327 | 7 | 1 | 1 | 325 | 1 | 327 | 5.00E-114 | 421 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60121.t1 | Q94CK9 | 55.5 | 191 | 81 | 3 | 122 | 312 | 112 | 298 | 2.7e-31 | 137.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60121.t1 | G7LG16 | 97.2 | 327 | 7 | 1 | 1 | 325 | 1 | 327 | 3.6e-114 | 421.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60121.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60121.t1 | MTR_8g039110 | 96.330 | 327 | 10 | 1 | 1 | 325 | 1 | 327 | 0.0 | 659 |
| MS.gene60121.t1 | MTR_0363s0040 | 95.370 | 216 | 8 | 1 | 1 | 214 | 1 | 216 | 1.01e-154 | 433 |
| MS.gene60121.t1 | MTR_3g014660 | 61.404 | 342 | 100 | 14 | 1 | 324 | 1 | 328 | 6.85e-114 | 333 |
| MS.gene60121.t1 | MTR_5g089750 | 43.704 | 270 | 125 | 8 | 42 | 296 | 159 | 416 | 5.10e-51 | 176 |
| MS.gene60121.t1 | MTR_8g076620 | 41.279 | 172 | 72 | 2 | 109 | 280 | 108 | 250 | 1.42e-34 | 129 |
| MS.gene60121.t1 | MTR_5g021130 | 45.062 | 162 | 80 | 4 | 122 | 282 | 100 | 253 | 9.20e-33 | 124 |
| MS.gene60121.t1 | MTR_3g112510 | 38.710 | 186 | 82 | 6 | 122 | 302 | 86 | 244 | 2.62e-30 | 116 |
| MS.gene60121.t1 | MTR_4g071110 | 36.571 | 175 | 73 | 4 | 111 | 285 | 6 | 142 | 6.21e-25 | 101 |
| MS.gene60121.t1 | MTR_1g023230 | 75.556 | 45 | 11 | 0 | 122 | 166 | 122 | 166 | 3.89e-18 | 82.8 |
| MS.gene60121.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 124 | 156 | 44 | 76 | 1.41e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60121.t1 | AT5G12330 | 40.379 | 317 | 165 | 9 | 1 | 312 | 1 | 298 | 7.82e-56 | 184 |
| MS.gene60121.t1 | AT5G12330 | 40.379 | 317 | 165 | 9 | 1 | 312 | 1 | 298 | 7.82e-56 | 184 |
| MS.gene60121.t1 | AT5G12330 | 40.379 | 317 | 165 | 9 | 1 | 312 | 88 | 385 | 2.29e-55 | 186 |
| MS.gene60121.t1 | AT3G54430 | 45.143 | 175 | 64 | 4 | 120 | 293 | 39 | 182 | 1.00e-38 | 135 |
| MS.gene60121.t1 | AT1G75520 | 45.062 | 162 | 82 | 3 | 122 | 280 | 125 | 282 | 1.14e-37 | 137 |
| MS.gene60121.t1 | AT5G66350 | 39.665 | 179 | 90 | 1 | 109 | 287 | 107 | 267 | 4.43e-37 | 135 |
| MS.gene60121.t1 | AT5G66350 | 39.665 | 179 | 90 | 1 | 109 | 287 | 107 | 267 | 5.19e-37 | 135 |
| MS.gene60121.t1 | AT5G66350 | 39.665 | 179 | 90 | 1 | 109 | 287 | 107 | 267 | 5.25e-37 | 135 |
| MS.gene60121.t1 | AT3G51060 | 46.250 | 160 | 62 | 5 | 122 | 278 | 144 | 282 | 9.87e-35 | 130 |
| MS.gene60121.t1 | AT1G19790 | 43.827 | 162 | 77 | 3 | 122 | 280 | 119 | 269 | 6.15e-34 | 127 |
| MS.gene60121.t1 | AT1G19790 | 43.827 | 162 | 77 | 3 | 122 | 280 | 119 | 269 | 6.15e-34 | 127 |
| MS.gene60121.t1 | AT4G36260 | 33.921 | 227 | 131 | 5 | 59 | 280 | 32 | 244 | 2.40e-30 | 117 |
| MS.gene60121.t1 | AT2G18120 | 37.423 | 163 | 76 | 2 | 122 | 284 | 72 | 208 | 1.75e-29 | 112 |
| MS.gene60121.t1 | AT2G18120 | 37.195 | 164 | 73 | 3 | 122 | 284 | 72 | 206 | 2.17e-29 | 112 |
| MS.gene60121.t1 | AT2G21400 | 38.272 | 162 | 71 | 3 | 120 | 281 | 8 | 140 | 2.60e-29 | 111 |
| MS.gene60121.t1 | AT2G21400 | 38.272 | 162 | 71 | 3 | 120 | 281 | 7 | 139 | 2.67e-29 | 111 |
| MS.gene60121.t1 | AT2G21400 | 35.802 | 162 | 60 | 3 | 120 | 281 | 8 | 125 | 2.96e-28 | 108 |
| MS.gene60121.t1 | AT2G21400 | 35.802 | 162 | 60 | 3 | 120 | 281 | 7 | 124 | 3.63e-28 | 107 |
| MS.gene60121.t1 | AT5G12330 | 37.089 | 213 | 117 | 6 | 1 | 208 | 1 | 201 | 4.28e-27 | 106 |
| MS.gene60121.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 122 | 171 | 17 | 66 | 2.92e-20 | 84.7 |
| MS.gene60121.t1 | AT5G33210 | 70.000 | 50 | 15 | 0 | 122 | 171 | 52 | 101 | 2.84e-19 | 84.0 |
Find 68 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAAAATGGTGAGTTTA+GGG | 0.245200 | 8.4:-59246957 | MS.gene60121:CDS |
| ATATTCTCATTGTTATTGTT+AGG | 0.304242 | 8.4:+59247109 | None:intergenic |
| GTGAGGAAAATGGTGAGTTT+AGG | 0.327085 | 8.4:-59246958 | MS.gene60121:CDS |
| CTATTAGAACCAAGTCTCTT+AGG | 0.357173 | 8.4:+59247281 | None:intergenic |
| TGAAGATGAACTTGCTTACT+TGG | 0.368954 | 8.4:-59245997 | MS.gene60121:CDS |
| AGTGATGGTGGTGCTTCTTC+TGG | 0.380721 | 8.4:-59246770 | MS.gene60121:CDS |
| GATGAAGGTAAGGGAATGTT+TGG | 0.393591 | 8.4:+59247199 | None:intergenic |
| TATTCTCATTGTTATTGTTA+GGG | 0.402170 | 8.4:+59247110 | None:intergenic |
| ATGTTCTTCTTCTGCAATTG+AGG | 0.412235 | 8.4:-59245841 | MS.gene60121:CDS |
| TGCCAATAGCAGATACTCTA+TGG | 0.417109 | 8.4:+59246024 | None:intergenic |
| TGCCATAGAGTATCTGCTAT+TGG | 0.440334 | 8.4:-59246026 | MS.gene60121:CDS |
| TGTTGGTTGTGAAGTGATGA+AGG | 0.446919 | 8.4:+59247250 | None:intergenic |
| TGGATTATGATCTGATGAAA+TGG | 0.452099 | 8.4:+59247219 | None:intergenic |
| TATGATCTGATGAAATGGTT+TGG | 0.460879 | 8.4:+59247224 | None:intergenic |
| TTTAGGGTTTGTCAAGATTG+TGG | 0.461202 | 8.4:-59246941 | MS.gene60121:CDS |
| GAATTGCAACTTGGAAGTAA+TGG | 0.469782 | 8.4:-59245885 | MS.gene60121:CDS |
| CAATCTCAACAAGCAGAGGC+AGG | 0.472994 | 8.4:+59245801 | None:intergenic |
| ATTGTAGCTATAAAAGATGT+AGG | 0.473288 | 8.4:-59246901 | MS.gene60121:CDS |
| TAGTGCTGATGATGAAGGTA+AGG | 0.474808 | 8.4:+59247189 | None:intergenic |
| TCATCATTACTTGTTGTGGT+TGG | 0.483361 | 8.4:+59247050 | None:intergenic |
| TCAGCACTAAGTGTTGGTCT+TGG | 0.487088 | 8.4:-59247175 | MS.gene60121:CDS |
| AAAGGGTTTCTCTATGATCA+AGG | 0.488489 | 8.4:-59245945 | MS.gene60121:CDS |
| CATGTTAGGCCTAAGAGACT+TGG | 0.493330 | 8.4:-59247290 | MS.gene60121:CDS |
| ATGATGGGTTGTGAGGAAAA+TGG | 0.496411 | 8.4:-59246968 | MS.gene60121:CDS |
| TTCATCATCATTACTTGTTG+TGG | 0.498315 | 8.4:+59247046 | None:intergenic |
| AATCAAAATTCTCTGCCTCT+TGG | 0.499143 | 8.4:+59246745 | None:intergenic |
| CGTGAAGAGCACGTGGATAC+CGG | 0.503179 | 8.4:-59246840 | MS.gene60121:CDS |
| CAACTTGGAAGTAATGGAAG+TGG | 0.519956 | 8.4:-59245879 | MS.gene60121:CDS |
| GATGAGGGTGAGTTGTGGTT+AGG | 0.525393 | 8.4:+59247140 | None:intergenic |
| TAAGTGGCCATGTATTCAAA+GGG | 0.529963 | 8.4:-59245962 | MS.gene60121:CDS |
| GGCAAAGTCTGCTTGAAACC+AGG | 0.531084 | 8.4:+59246080 | None:intergenic |
| AGAGAAACCCTTTGAATACA+TGG | 0.531479 | 8.4:+59245955 | None:intergenic |
| ATAAGTGGCCATGTATTCAA+AGG | 0.532258 | 8.4:-59245963 | MS.gene60121:CDS |
| AGGACTTGTTGTAAAGGTCG+TGG | 0.532466 | 8.4:-59246881 | MS.gene60121:CDS |
| TTGGCCACTGTGAATATAAG+TGG | 0.544977 | 8.4:-59245978 | MS.gene60121:CDS |
| GCAGGCGCGCGAACATAGCG+AGG | 0.545668 | 8.4:+59246059 | None:intergenic |
| AGATGTAGGACTTGTTGTAA+AGG | 0.546985 | 8.4:-59246887 | MS.gene60121:CDS |
| CTATGGCACTTGAAAACAGC+AGG | 0.559201 | 8.4:+59246041 | None:intergenic |
| CGGTCCCGTCTCATCGAAGC+CGG | 0.561361 | 8.4:+59246821 | None:intergenic |
| TTGATGATGAGGGTGAGTTG+TGG | 0.569516 | 8.4:+59247135 | None:intergenic |
| AGAGTATCTGCTATTGGCAA+TGG | 0.570693 | 8.4:-59246020 | MS.gene60121:CDS |
| GCTTAAACTTCTAGTTCTAG+TGG | 0.572204 | 8.4:+59246667 | None:intergenic |
| ACACTTAGTGCTGATGATGA+AGG | 0.573973 | 8.4:+59247184 | None:intergenic |
| GAGACGGGACCGGAGTATGA+TGG | 0.578242 | 8.4:-59246810 | MS.gene60121:CDS |
| TGTGTTTCAGAATTGCAACT+TGG | 0.580875 | 8.4:-59245894 | MS.gene60121:CDS |
| GGATACCGGCTTCGATGAGA+CGG | 0.585711 | 8.4:-59246826 | MS.gene60121:CDS |
| CGGAGTATGATGGTGGCTGA+AGG | 0.587151 | 8.4:-59246800 | MS.gene60121:CDS |
| GCTGAAGGTGGTGACAGTGA+TGG | 0.591111 | 8.4:-59246785 | MS.gene60121:CDS |
| GGGTGAGTTGTGGTTAGGAG+TGG | 0.597068 | 8.4:+59247145 | None:intergenic |
| GAAGGTGGTGACAGTGATGG+TGG | 0.597594 | 8.4:-59246782 | MS.gene60121:CDS |
| TAATGATGATGAATTCATCA+AGG | 0.600155 | 8.4:-59247036 | MS.gene60121:CDS |
| CGGCTTCGATGAGACGGGAC+CGG | 0.606559 | 8.4:-59246820 | MS.gene60121:CDS |
| GGTGAGTTGTGGTTAGGAGT+GGG | 0.608099 | 8.4:+59247146 | None:intergenic |
| GATACCGGCTTCGATGAGAC+GGG | 0.619399 | 8.4:-59246825 | MS.gene60121:CDS |
| AATCTCAACAAGCAGAGGCA+GGG | 0.619976 | 8.4:+59245802 | None:intergenic |
| TCATCATCAGCACTAAGTGT+TGG | 0.620780 | 8.4:-59247181 | MS.gene60121:CDS |
| AGTGCTGATGATGAAGGTAA+GGG | 0.621262 | 8.4:+59247190 | None:intergenic |
| GTTGTGGTTGGCACATCTTG+AGG | 0.623886 | 8.4:+59247062 | None:intergenic |
| AAAGCAATCTCAACAAGCAG+AGG | 0.639282 | 8.4:+59245797 | None:intergenic |
| AAACTTGATGATGGGTTGTG+AGG | 0.642133 | 8.4:-59246975 | MS.gene60121:CDS |
| GTGCTTCTTCTGGTACCAAG+AGG | 0.651535 | 8.4:-59246760 | MS.gene60121:CDS |
| CTTCAGCCACCATCATACTC+CGG | 0.656848 | 8.4:+59246801 | None:intergenic |
| AGTATGATGGTGGCTGAAGG+TGG | 0.658861 | 8.4:-59246797 | MS.gene60121:CDS |
| ATAACTAGCTCTTGTCACCA+AGG | 0.669802 | 8.4:-59246638 | MS.gene60121:intron |
| GTACTCACGTGAAGAGCACG+TGG | 0.684544 | 8.4:-59246847 | MS.gene60121:CDS |
| AGTTGCAATTCTGAAACACA+AGG | 0.685469 | 8.4:+59245897 | None:intergenic |
| ACGGGACCGGAGTATGATGG+TGG | 0.723586 | 8.4:-59246807 | MS.gene60121:CDS |
| ATGGCCACTTATATTCACAG+TGG | 0.791885 | 8.4:+59245974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATGATTATTTTAATCA+TGG | + | chr8.4:59246506-59246525 | None:intergenic | 10.0% |
| !!! | TTGTTATTTCATAAATTTAA+GGG | - | chr8.4:59246759-59246778 | MS.gene60121:CDS | 10.0% |
| !!! | TTTGTTATTTCATAAATTTA+AGG | - | chr8.4:59246758-59246777 | MS.gene60121:CDS | 10.0% |
| !! | ATTAAAAAAAGTGAGTAAAT+AGG | + | chr8.4:59246828-59246847 | None:intergenic | 15.0% |
| !!! | GTTTACAAAACTTTTTTTTA+TGG | - | chr8.4:59246533-59246552 | MS.gene60121:intron | 15.0% |
| !!! | ATATTCTCATTGTTATTGTT+AGG | + | chr8.4:59245995-59246014 | None:intergenic | 20.0% |
| !!! | TATTCTCATTGTTATTGTTA+GGG | + | chr8.4:59245994-59246013 | None:intergenic | 20.0% |
| !!! | TCATTGTTACTTTATAAACT+AGG | - | chr8.4:59246851-59246870 | MS.gene60121:CDS | 20.0% |
| !!! | TTTTTCTATTAACCAAACTT+AGG | + | chr8.4:59246907-59246926 | None:intergenic | 20.0% |
| ! | AAGAAACAAAAACTTGATGA+TGG | - | chr8.4:59246117-59246136 | MS.gene60121:intron | 25.0% |
| ! | AATTGTGTATATCCTAAGTT+TGG | - | chr8.4:59246892-59246911 | MS.gene60121:CDS | 25.0% |
| ! | ATTGTAGCTATAAAAGATGT+AGG | - | chr8.4:59246200-59246219 | MS.gene60121:intron | 25.0% |
| ! | CGGATAATGATTTACAAAAA+TGG | - | chr8.4:59246619-59246638 | MS.gene60121:intron | 25.0% |
| !! | AGAAACAAAAACTTGATGAT+GGG | - | chr8.4:59246118-59246137 | MS.gene60121:intron | 25.0% |
| !! | TAATGATGATGAATTCATCA+AGG | - | chr8.4:59246065-59246084 | MS.gene60121:CDS | 25.0% |
| !! | TTCATCAAGACTCAAATTTT+TGG | - | chr8.4:59246014-59246033 | MS.gene60121:CDS | 25.0% |
| ATCAATCAATTTAGTCTCAG+AGG | + | chr8.4:59246718-59246737 | None:intergenic | 30.0% | |
| TATGATCTGATGAAATGGTT+TGG | + | chr8.4:59245880-59245899 | None:intergenic | 30.0% | |
| TGGATTATGATCTGATGAAA+TGG | + | chr8.4:59245885-59245904 | None:intergenic | 30.0% | |
| TTGTAAATCATTATCCGTGT+CGG | + | chr8.4:59246616-59246635 | None:intergenic | 30.0% | |
| ! | TTCATCATCATTACTTGTTG+TGG | + | chr8.4:59246058-59246077 | None:intergenic | 30.0% |
| !! | AACAAAAAGTGAAAGTACCT+TGG | + | chr8.4:59246483-59246502 | None:intergenic | 30.0% |
| !!! | ATGAAATGGTTTGGTTTTGT+TGG | + | chr8.4:59245871-59245890 | None:intergenic | 30.0% |
| AAAGGGTTTCTCTATGATCA+AGG | - | chr8.4:59247156-59247175 | MS.gene60121:CDS | 35.0% | |
| AATCAAAATTCTCTGCCTCT+TGG | + | chr8.4:59246359-59246378 | None:intergenic | 35.0% | |
| AGAGAAACCCTTTGAATACA+TGG | + | chr8.4:59247149-59247168 | None:intergenic | 35.0% | |
| ATAAGTGGCCATGTATTCAA+AGG | - | chr8.4:59247138-59247157 | MS.gene60121:CDS | 35.0% | |
| ATGTTCTTCTTCTGCAATTG+AGG | - | chr8.4:59247260-59247279 | MS.gene60121:CDS | 35.0% | |
| CTATTAGAACCAAGTCTCTT+AGG | + | chr8.4:59245823-59245842 | None:intergenic | 35.0% | |
| GAATTGCAACTTGGAAGTAA+TGG | - | chr8.4:59247216-59247235 | MS.gene60121:CDS | 35.0% | |
| GCATAATCCAGTGTAATCAT+AGG | - | chr8.4:59246641-59246660 | MS.gene60121:CDS | 35.0% | |
| TAAGTGGCCATGTATTCAAA+GGG | - | chr8.4:59247139-59247158 | MS.gene60121:CDS | 35.0% | |
| TGAGGAAAATGGTGAGTTTA+GGG | - | chr8.4:59246144-59246163 | MS.gene60121:intron | 35.0% | |
| TGGTTAATAGAAAAATGCCC+CGG | - | chr8.4:59246912-59246931 | MS.gene60121:CDS | 35.0% | |
| TGTGTTTCAGAATTGCAACT+TGG | - | chr8.4:59247207-59247226 | MS.gene60121:CDS | 35.0% | |
| ! | TGAAGATGAACTTGCTTACT+TGG | - | chr8.4:59247104-59247123 | MS.gene60121:CDS | 35.0% |
| ! | TTTAGGGTTTGTCAAGATTG+TGG | - | chr8.4:59246160-59246179 | MS.gene60121:intron | 35.0% |
| !! | AGATGTAGGACTTGTTGTAA+AGG | - | chr8.4:59246214-59246233 | MS.gene60121:intron | 35.0% |
| !! | AGTTGCAATTCTGAAACACA+AGG | + | chr8.4:59247207-59247226 | None:intergenic | 35.0% |
| !! | GCTTAAACTTCTAGTTCTAG+TGG | + | chr8.4:59246437-59246456 | None:intergenic | 35.0% |
| !! | TCATCATTACTTGTTGTGGT+TGG | + | chr8.4:59246054-59246073 | None:intergenic | 35.0% |
| !!! | TGTTAGGGTTTTGATGATGA+GGG | + | chr8.4:59245979-59245998 | None:intergenic | 35.0% |
| !!! | TTGTTAGGGTTTTGATGATG+AGG | + | chr8.4:59245980-59245999 | None:intergenic | 35.0% |
| ATGGCCACTTATATTCACAG+TGG | + | chr8.4:59247130-59247149 | None:intergenic | 40.0% | |
| GATGAAGGTAAGGGAATGTT+TGG | + | chr8.4:59245905-59245924 | None:intergenic | 40.0% | |
| GTGAGGAAAATGGTGAGTTT+AGG | - | chr8.4:59246143-59246162 | MS.gene60121:intron | 40.0% | |
| TCATCATCAGCACTAAGTGT+TGG | - | chr8.4:59245920-59245939 | MS.gene60121:CDS | 40.0% | |
| TGCCAATAGCAGATACTCTA+TGG | + | chr8.4:59247080-59247099 | None:intergenic | 40.0% | |
| TGTTTGTGAATTGCAGATCC+TGG | - | chr8.4:59247003-59247022 | MS.gene60121:CDS | 40.0% | |
| TTAATAGAAAAATGCCCCGG+AGG | - | chr8.4:59246915-59246934 | MS.gene60121:CDS | 40.0% | |
| TTGGCCACTGTGAATATAAG+TGG | - | chr8.4:59247123-59247142 | MS.gene60121:CDS | 40.0% | |
| ! | AGAGTATCTGCTATTGGCAA+TGG | - | chr8.4:59247081-59247100 | MS.gene60121:CDS | 40.0% |
| ! | ATAACTAGCTCTTGTCACCA+AGG | - | chr8.4:59246463-59246482 | MS.gene60121:intron | 40.0% |
| ! | CAACTTGGAAGTAATGGAAG+TGG | - | chr8.4:59247222-59247241 | MS.gene60121:CDS | 40.0% |
| ! | TGCCATAGAGTATCTGCTAT+TGG | - | chr8.4:59247075-59247094 | MS.gene60121:CDS | 40.0% |
| ! | TGTAATCATAGGTGTCGTGT+CGG | - | chr8.4:59246652-59246671 | MS.gene60121:CDS | 40.0% |
| ! | TGTTGGTTGTGAAGTGATGA+AGG | + | chr8.4:59245854-59245873 | None:intergenic | 40.0% |
| !! | AAACTTGATGATGGGTTGTG+AGG | - | chr8.4:59246126-59246145 | MS.gene60121:intron | 40.0% |
| !! | ACACTTAGTGCTGATGATGA+AGG | + | chr8.4:59245920-59245939 | None:intergenic | 40.0% |
| !! | AGTGCTGATGATGAAGGTAA+GGG | + | chr8.4:59245914-59245933 | None:intergenic | 40.0% |
| !! | ATGATGGGTTGTGAGGAAAA+TGG | - | chr8.4:59246133-59246152 | MS.gene60121:intron | 40.0% |
| !! | TAGTGCTGATGATGAAGGTA+AGG | + | chr8.4:59245915-59245934 | None:intergenic | 40.0% |
| CACGACACCTATGATTACAC+TGG | + | chr8.4:59246651-59246670 | None:intergenic | 45.0% | |
| CATGTTAGGCCTAAGAGACT+TGG | - | chr8.4:59245811-59245830 | MS.gene60121:CDS | 45.0% | |
| CTATGGCACTTGAAAACAGC+AGG | + | chr8.4:59247063-59247082 | None:intergenic | 45.0% | |
| GTCAGAGAGGTAGACACAAT+TGG | - | chr8.4:59246945-59246964 | MS.gene60121:CDS | 45.0% | |
| TGTCCGTGTTTCATAGGTCT+CGG | + | chr8.4:59246559-59246578 | None:intergenic | 45.0% | |
| !! | AGGACTTGTTGTAAAGGTCG+TGG | - | chr8.4:59246220-59246239 | MS.gene60121:intron | 45.0% |
| !! | ATTTAGTCTCAGAGGTGTCC+TGG | + | chr8.4:59246710-59246729 | None:intergenic | 45.0% |
| !! | TCAGCACTAAGTGTTGGTCT+TGG | - | chr8.4:59245926-59245945 | MS.gene60121:CDS | 45.0% |
| !! | TTGATGATGAGGGTGAGTTG+TGG | + | chr8.4:59245969-59245988 | None:intergenic | 45.0% |
| CGAACACGAACATACCGACA+CGG | - | chr8.4:59246599-59246618 | MS.gene60121:intron | 50.0% | |
| CGTGTGTGTCCGTGTTTCAT+AGG | + | chr8.4:59246565-59246584 | None:intergenic | 50.0% | |
| CTTCAGCCACCATCATACTC+CGG | + | chr8.4:59246303-59246322 | None:intergenic | 50.0% | |
| GATGAGGGTGAGTTGTGGTT+AGG | + | chr8.4:59245964-59245983 | None:intergenic | 50.0% | |
| GGCAAAGTCTGCTTGAAACC+AGG | + | chr8.4:59247024-59247043 | None:intergenic | 50.0% | |
| GGTGAGTTGTGGTTAGGAGT+GGG | + | chr8.4:59245958-59245977 | None:intergenic | 50.0% | |
| GTGCTTCTTCTGGTACCAAG+AGG | - | chr8.4:59246341-59246360 | MS.gene60121:intron | 50.0% | |
| GTTGTGGTTGGCACATCTTG+AGG | + | chr8.4:59246042-59246061 | None:intergenic | 50.0% | |
| TGGCCGAGACCTATGAAACA+CGG | - | chr8.4:59246553-59246572 | MS.gene60121:intron | 50.0% | |
| ! | ATCGACTTATGTCCGACACC+AGG | - | chr8.4:59246689-59246708 | MS.gene60121:CDS | 50.0% |
| ! | CATAGGTGTCGTGTCGGTAT+CGG | - | chr8.4:59246658-59246677 | MS.gene60121:CDS | 50.0% |
| !! | AGTATGATGGTGGCTGAAGG+TGG | - | chr8.4:59246304-59246323 | MS.gene60121:intron | 50.0% |
| !! | AGTGATGGTGGTGCTTCTTC+TGG | - | chr8.4:59246331-59246350 | MS.gene60121:intron | 50.0% |
| AGAAAAATGCCCCGGAGGCA+CGG | - | chr8.4:59246920-59246939 | MS.gene60121:CDS | 55.0% | |
| GAAGGTGGTGACAGTGATGG+TGG | - | chr8.4:59246319-59246338 | MS.gene60121:intron | 55.0% | |
| GCTGAAGGTGGTGACAGTGA+TGG | - | chr8.4:59246316-59246335 | MS.gene60121:intron | 55.0% | |
| GGGTGAGTTGTGGTTAGGAG+TGG | + | chr8.4:59245959-59245978 | None:intergenic | 55.0% | |
| ! | CGTGAAGAGCACGTGGATAC+CGG | - | chr8.4:59246261-59246280 | MS.gene60121:intron | 55.0% |
| ! | GTACTCACGTGAAGAGCACG+TGG | - | chr8.4:59246254-59246273 | MS.gene60121:intron | 55.0% |
| !! | CGGAGTATGATGGTGGCTGA+AGG | - | chr8.4:59246301-59246320 | MS.gene60121:intron | 55.0% |
| !! | GATACCGGCTTCGATGAGAC+GGG | - | chr8.4:59246276-59246295 | MS.gene60121:intron | 55.0% |
| !! | GGATACCGGCTTCGATGAGA+CGG | - | chr8.4:59246275-59246294 | MS.gene60121:intron | 55.0% |
| !! | TCTCAGAGGTGTCCTGGTGT+CGG | + | chr8.4:59246704-59246723 | None:intergenic | 55.0% |
| !! | TGTCGTGTCGGTATCGGTGT+TGG | - | chr8.4:59246664-59246683 | MS.gene60121:CDS | 55.0% |
| ACGGGACCGGAGTATGATGG+TGG | - | chr8.4:59246294-59246313 | MS.gene60121:intron | 60.0% | |
| GAGACGGGACCGGAGTATGA+TGG | - | chr8.4:59246291-59246310 | MS.gene60121:intron | 60.0% | |
| CGGCTTCGATGAGACGGGAC+CGG | - | chr8.4:59246281-59246300 | MS.gene60121:intron | 65.0% | |
| CGGTCCCGTCTCATCGAAGC+CGG | + | chr8.4:59246283-59246302 | None:intergenic | 65.0% | |
| CTCTCTGACGACCGTGCCTC+CGG | + | chr8.4:59246934-59246953 | None:intergenic | 65.0% | |
| TCTCTGACGACCGTGCCTCC+GGG | + | chr8.4:59246933-59246952 | None:intergenic | 65.0% | |
| CTCTGACGACCGTGCCTCCG+GGG | + | chr8.4:59246932-59246951 | None:intergenic | 70.0% | |
| GCAGGCGCGCGAACATAGCG+AGG | + | chr8.4:59247045-59247064 | None:intergenic | 70.0% | |
| ! | CGGAGGCACGGTCGTCAGAG+AGG | - | chr8.4:59246932-59246951 | MS.gene60121:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 59245806 | 59247317 | 59245806 | ID=MS.gene60121 |
| chr8.4 | mRNA | 59245806 | 59247317 | 59245806 | ID=MS.gene60121.t1;Parent=MS.gene60121 |
| chr8.4 | exon | 59246639 | 59247317 | 59246639 | ID=MS.gene60121.t1.exon1;Parent=MS.gene60121.t1 |
| chr8.4 | CDS | 59246639 | 59247317 | 59246639 | ID=cds.MS.gene60121.t1;Parent=MS.gene60121.t1 |
| chr8.4 | exon | 59245806 | 59246104 | 59245806 | ID=MS.gene60121.t1.exon2;Parent=MS.gene60121.t1 |
| chr8.4 | CDS | 59245806 | 59246104 | 59245806 | ID=cds.MS.gene60121.t1;Parent=MS.gene60121.t1 |
| Gene Sequence |
| Protein sequence |
