AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60168

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60168.t1 MTR_4g097600 98.524 271 3 1 1 270 1 271 0.0 550
MS.gene60168.t1 MTR_5g014890 63.860 285 73 8 1 270 1 270 1.27e-102 300
MS.gene60168.t1 MTR_1g054285 62.963 189 48 4 68 255 116 283 3.64e-72 223
MS.gene60168.t1 MTR_2g061030 76.119 134 31 1 108 240 180 313 1.79e-67 213
MS.gene60168.t1 MTR_7g093430 76.984 126 27 1 115 240 150 273 1.08e-65 207
MS.gene60168.t1 MTR_5g013010 68.293 164 42 4 79 240 95 250 2.89e-65 206
MS.gene60168.t1 MTR_1g017090 45.847 301 114 9 5 270 2 288 7.76e-65 204
MS.gene60168.t1 MTR_4g100550 66.667 162 41 2 80 240 85 234 1.01e-64 204
MS.gene60168.t1 MTR_8g006705 82.456 114 19 1 126 238 145 258 7.68e-62 197
MS.gene60168.t1 MTR_3g103590 54.124 194 64 6 90 268 117 300 7.21e-50 166
MS.gene60168.t1 MTR_4g084750 63.866 119 37 1 126 238 64 182 1.02e-48 160
MS.gene60168.t1 MTR_2g038625 44.211 190 93 4 54 239 15 195 1.38e-39 137
MS.gene60168.t1 MTR_2g038580 44.211 190 93 4 54 239 15 195 1.38e-39 137
MS.gene60168.t1 MTR_4g126900 59.649 114 42 2 129 238 90 203 3.93e-35 125
MS.gene60168.t1 MTR_5g013010 62.376 101 29 3 79 178 95 187 6.36e-28 106
MS.gene60168.t1 MTR_5g039000 47.664 107 54 1 114 218 62 168 4.36e-21 90.5
MS.gene60168.t1 MTR_7g103340 42.991 107 61 0 108 214 44 150 1.72e-20 87.8
MS.gene60168.t1 MTR_3g080100 35.417 192 112 5 80 261 12 201 3.59e-20 87.4
MS.gene60168.t1 MTR_3g080100 38.365 159 88 4 113 261 4 162 6.80e-20 85.9
MS.gene60168.t1 MTR_8g468210 42.735 117 64 1 102 218 55 168 1.16e-19 86.7
MS.gene60168.t1 MTR_7g010020 46.602 103 51 1 118 216 71 173 5.28e-19 84.3
MS.gene60168.t1 MTR_6g007647 50.000 88 44 0 127 214 33 120 6.63e-19 84.0
MS.gene60168.t1 MTR_1g061660 48.315 89 46 0 127 215 59 147 6.66e-19 83.6
MS.gene60168.t1 MTR_6g007647 50.000 88 44 0 127 214 67 154 7.53e-19 84.3
MS.gene60168.t1 MTR_4g107650 45.455 99 54 0 116 214 84 182 2.58e-17 80.9
MS.gene60168.t1 MTR_8g089895 47.170 106 47 2 118 214 43 148 3.35e-17 80.1
MS.gene60168.t1 MTR_3g086790 37.975 158 85 5 119 265 52 207 4.38e-17 79.7
MS.gene60168.t1 MTR_6g011610 45.192 104 49 2 118 213 86 189 8.59e-17 78.6
MS.gene60168.t1 MTR_5g038280 40.000 135 65 3 87 213 54 180 9.78e-17 79.0
MS.gene60168.t1 MTR_6g011610 45.192 104 49 2 118 213 67 170 1.60e-16 77.4
MS.gene60168.t1 MTR_8g469430 46.809 94 43 1 127 213 89 182 7.67e-16 75.9
MS.gene60168.t1 MTR_5g019680 43.689 103 53 1 119 221 45 142 1.10e-12 65.9
MS.gene60168.t1 MTR_5g019650 42.857 105 58 1 119 221 45 149 1.19e-12 65.9
MS.gene60168.t1 MTR_3g092150 43.011 93 46 1 130 215 41 133 3.41e-12 65.1
MS.gene60168.t1 MTR_8g026960 42.683 82 47 0 131 212 38 119 2.27e-11 62.8
MS.gene60168.t1 MTR_5g029320 35.849 106 68 0 118 223 83 188 5.00e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60168.t1 AT4G37790 61.806 288 82 9 1 270 1 278 2.52e-91 271
MS.gene60168.t1 AT2G22800 58.163 294 79 11 1 270 1 274 2.54e-83 251
MS.gene60168.t1 AT5G06710 61.376 189 56 4 76 254 136 317 4.81e-70 219
MS.gene60168.t1 AT5G47370 57.789 199 74 4 72 264 70 264 1.69e-66 208
MS.gene60168.t1 AT3G60390 60.656 183 57 6 69 238 94 274 1.18e-62 199
MS.gene60168.t1 AT4G17460 60.221 181 64 5 68 241 71 250 4.60e-62 197
MS.gene60168.t1 AT4G16780 75.194 129 30 2 112 239 115 242 1.93e-61 196
MS.gene60168.t1 AT2G44910 79.130 115 23 1 126 239 162 276 6.97e-59 190
MS.gene60168.t1 AT2G01430 54.676 139 56 2 106 239 113 249 2.34e-44 151
MS.gene60168.t1 AT1G70920 52.941 136 57 1 114 249 26 154 1.00e-40 139
MS.gene60168.t1 AT1G70920 56.349 126 48 1 114 239 56 174 1.15e-40 140
MS.gene60168.t1 AT5G06710 59.292 113 29 4 76 178 136 241 4.89e-30 114
MS.gene60168.t1 AT2G01430 50.526 95 40 2 106 195 113 205 1.10e-22 93.2
MS.gene60168.t1 AT1G69780 46.465 99 53 0 116 214 74 172 7.38e-20 87.4
MS.gene60168.t1 AT1G26960 41.964 112 65 0 119 230 63 174 2.17e-19 85.1
MS.gene60168.t1 AT5G03790 35.374 147 79 2 127 257 77 223 3.68e-18 81.6
MS.gene60168.t1 AT5G65310 45.000 100 48 1 122 214 67 166 1.57e-16 78.2
MS.gene60168.t1 AT3G01470 45.161 93 44 1 127 212 68 160 1.78e-16 77.4
MS.gene60168.t1 AT5G65310 45.000 100 48 1 122 214 49 148 1.94e-16 77.8
MS.gene60168.t1 AT2G18550 44.000 100 56 0 114 213 48 147 7.98e-16 74.7
MS.gene60168.t1 AT5G03790 47.253 91 48 0 127 217 77 167 9.56e-16 73.9
MS.gene60168.t1 AT5G15150 42.478 113 56 3 113 216 96 208 1.30e-15 75.9
MS.gene60168.t1 AT4G36740 44.681 94 52 0 120 213 49 142 2.37e-15 73.6
MS.gene60168.t1 AT4G36740 44.681 94 52 0 120 213 48 141 2.40e-15 73.6
MS.gene60168.t1 AT4G40060 44.330 97 47 1 125 214 57 153 2.51e-15 74.7
MS.gene60168.t1 AT3G01220 43.269 104 53 2 119 216 77 180 2.86e-15 74.3
MS.gene60168.t1 AT1G27045 46.875 96 44 1 127 215 68 163 4.71e-15 73.2
MS.gene60168.t1 AT1G27045 40.909 132 62 3 127 250 68 191 5.84e-15 72.4
MS.gene60168.t1 AT1G27045 57.576 66 28 0 127 192 17 82 8.74e-15 70.9
MS.gene60168.t1 AT1G27045 57.576 66 28 0 127 192 25 90 9.52e-15 71.2
MS.gene60168.t1 AT1G27045 57.576 66 28 0 127 192 25 90 9.52e-15 71.2
MS.gene60168.t1 AT2G36610 40.816 98 50 1 126 215 70 167 3.36e-14 69.7
MS.gene60168.t1 AT2G22430 43.750 96 50 1 125 216 60 155 7.44e-14 70.5
MS.gene60168.t1 AT2G46680 43.011 93 49 1 130 218 35 127 1.54e-13 68.9
MS.gene60168.t1 AT2G46680 41.111 90 53 0 130 219 35 124 1.55e-13 68.9
MS.gene60168.t1 AT5G06710 51.163 86 25 4 76 151 136 214 4.06e-12 64.7
MS.gene60168.t1 AT5G06710 51.163 86 25 4 76 151 136 214 4.06e-12 64.7
MS.gene60168.t1 AT3G61890 38.947 95 44 1 130 210 33 127 2.70e-11 62.4
MS.gene60168.t1 AT5G66700 44.872 78 43 0 115 192 59 136 6.51e-11 61.2
MS.gene60168.t1 AT1G79840 43.373 83 46 1 126 207 102 184 9.69e-11 62.4

Find 59 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGAGAAATTGCTCTTAT+TGG 0.187884 8.2:+24402387 None:intergenic
CTAGGTGGTGGTGGTGTTAA+TGG 0.243245 8.2:-24402418 MS.gene60168:CDS
TCAGGCCTTCAACTTATTCT+AGG 0.257483 8.2:-24403654 MS.gene60168:CDS
ATGTTTCACAACATTTCTTT+AGG 0.284664 8.2:+24402563 None:intergenic
AAAGGAGGTGCAAGAATTAA+AGG 0.295896 8.2:-24402515 MS.gene60168:CDS
GGTACCTGGCTCTACGGTTC+TGG 0.335278 8.2:+24403073 None:intergenic
TTATGATTACTTGAGGAATA+AGG 0.345806 8.2:+24403573 None:intergenic
AAGCATAGCAGATTGATCTT+TGG 0.351274 8.2:+24403293 None:intergenic
GGATGGTGGTGTGTCTTGTT+TGG 0.360529 8.2:+24403614 None:intergenic
CACATGAAGGGCACATAGTA+AGG 0.379041 8.2:+24402446 None:intergenic
TGTTAGCAGTGAATTAGAAA+TGG 0.445208 8.2:-24403403 MS.gene60168:CDS
AGGCTTTGTAACGTTGTTGT+TGG 0.454137 8.2:+24403593 None:intergenic
AAACATTAACAGAAGAGAAT+AGG 0.467293 8.2:-24402546 MS.gene60168:CDS
GCTGAACCATCTTTAACGTT+GGG 0.469771 8.2:-24403540 MS.gene60168:CDS
TTCCTCTTTCTCTAGTGGGA+GGG 0.480454 8.2:-24403442 MS.gene60168:CDS
TTGTTTCCTCTTTCTCTAGT+GGG 0.482881 8.2:-24403446 MS.gene60168:CDS
AGCTGAACCATCTTTAACGT+TGG 0.482898 8.2:-24403541 MS.gene60168:CDS
CACCCTCCCACTAGAGAAAG+AGG 0.485237 8.2:+24403440 None:intergenic
CTAAGCCTAGAATAAGTTGA+AGG 0.488952 8.2:+24403649 None:intergenic
TTCTTCATAGTAACTCTTGG+TGG 0.498912 8.2:+24403512 None:intergenic
AGGTGTTAGATTTAACTCTC+TGG 0.498987 8.2:+24403116 None:intergenic
CACCTCGACAAGTTGAGGTC+TGG 0.514656 8.2:-24403098 MS.gene60168:CDS
AGGTTCTTCATAGTAACTCT+TGG 0.520099 8.2:+24403509 None:intergenic
GTGAAGGGATTGTAAAAGTG+AGG 0.521344 8.2:+24402364 None:intergenic
GGTTCCAGAACCGTAGAGCC+AGG 0.526669 8.2:-24403077 MS.gene60168:intron
GTTGTTTCCTCTTTCTCTAG+TGG 0.529933 8.2:-24403447 MS.gene60168:CDS
TTTCCTCTTTCTCTAGTGGG+AGG 0.530703 8.2:-24403443 MS.gene60168:CDS
CCACCTAGTCTCTCACATGA+AGG 0.532667 8.2:+24402433 None:intergenic
GTAAGGGTAGCAGCAGGCAT+AGG 0.543191 8.2:+24402463 None:intergenic
TTTGTAACGTTGTTGTTGGA+TGG 0.545023 8.2:+24403597 None:intergenic
GATAAACCCAACGTTAAAGA+TGG 0.545369 8.2:+24403534 None:intergenic
AGAGAATAGGAGGCTACAAA+AGG 0.550932 8.2:-24402533 MS.gene60168:CDS
AGAAATGGAAACGACGGAGA+TGG 0.553541 8.2:-24403388 MS.gene60168:CDS
AGCAGGCATAGGCATATACA+AGG 0.565140 8.2:+24402474 None:intergenic
CACATAGTAAGGGTAGCAGC+AGG 0.565288 8.2:+24402457 None:intergenic
TGTATAGGTACCTGGCTCTA+CGG 0.565795 8.2:+24403067 None:intergenic
AAAGCTGAAGCAAACAGAAG+TGG 0.566126 8.2:-24402596 MS.gene60168:CDS
TGTGAGAGACTAGGTGGTGG+TGG 0.571619 8.2:-24402427 MS.gene60168:CDS
TCTAACACCTCGACAAGTTG+AGG 0.578186 8.2:-24403103 MS.gene60168:CDS
CATTAACAGAAGAGAATAGG+AGG 0.587793 8.2:-24402543 MS.gene60168:CDS
ATAGTTGTTATGATTACTTG+AGG 0.592747 8.2:+24403566 None:intergenic
AAGACGGTGCCACTGCAGCT+AGG 0.595899 8.2:-24403332 MS.gene60168:CDS
AAGCTTCTTCCTAGCTGCAG+TGG 0.601402 8.2:+24403323 None:intergenic
CAAGATGCTAGTAACAACTC+AGG 0.601537 8.2:-24403672 MS.gene60168:CDS
GTAACGTTGTTGTTGGATGG+TGG 0.602624 8.2:+24403600 None:intergenic
GAATAGGAGGCTACAAAAGG+AGG 0.603538 8.2:-24402530 MS.gene60168:CDS
GGTGGTGGTGGTGTTAATGG+TGG 0.605462 8.2:-24402415 MS.gene60168:CDS
TGCTGCTGAAGAATTTGTGA+AGG 0.611202 8.2:+24402348 None:intergenic
CACCTAGTCTCTCACATGAA+GGG 0.617037 8.2:+24402434 None:intergenic
ACATGAAGGGCACATAGTAA+GGG 0.623367 8.2:+24402447 None:intergenic
AACCAGACCTCAACTTGTCG+AGG 0.626268 8.2:+24403096 None:intergenic
GAGGAAACAACGCTGTGATG+AGG 0.631204 8.2:+24403459 None:intergenic
TGAATTAGAAATGGAAACGA+CGG 0.634393 8.2:-24403394 MS.gene60168:CDS
CCTTCATGTGAGAGACTAGG+TGG 0.665742 8.2:-24402433 MS.gene60168:CDS
TCATGTGAGAGACTAGGTGG+TGG 0.669612 8.2:-24402430 MS.gene60168:CDS
GCTGCTGAAGAATTTGTGAA+GGG 0.673398 8.2:+24402349 None:intergenic
ATCAGCGACGAAGATGAAGA+CGG 0.679700 8.2:-24403348 MS.gene60168:CDS
TGCCCTTCATGTGAGAGACT+AGG 0.694086 8.2:-24402436 MS.gene60168:CDS
GCAGGCATAGGCATATACAA+GGG 0.751200 8.2:+24402475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAATTTGATAAATAAA+TGG + chr8.2:24402861-24402880 None:intergenic 10.0%
!! ATTATCTTCAAATTAATTAA+GGG - chr8.2:24403195-24403214 MS.gene60168:intron 10.0%
!! TATTATCTTCAAATTAATTA+AGG - chr8.2:24403194-24403213 MS.gene60168:intron 10.0%
!!! TGTAATATTAAGATTATTTT+TGG - chr8.2:24403386-24403405 MS.gene60168:CDS 10.0%
!! AATACATATACTATTGTAAA+TGG - chr8.2:24403243-24403262 MS.gene60168:intron 15.0%
!! AATTAAATTAAACTCAACTA+TGG - chr8.2:24403016-24403035 MS.gene60168:intron 15.0%
!! ATTTACAATAGTATATGTAT+TGG + chr8.2:24403244-24403263 None:intergenic 15.0%
!! ATTTGAAGATAATATTTCAT+TGG + chr8.2:24403188-24403207 None:intergenic 15.0%
!!! TATTAAGATTATTTTTGGTT+TGG - chr8.2:24403391-24403410 MS.gene60168:CDS 15.0%
!!! TATTTATCAAATTTTTGTCA+TGG - chr8.2:24402863-24402882 MS.gene60168:intron 15.0%
!! GTGTAGACAAAAAAAATTAT+GGG - chr8.2:24403339-24403358 MS.gene60168:CDS 20.0%
!! TGTGTAGACAAAAAAAATTA+TGG - chr8.2:24403338-24403357 MS.gene60168:CDS 20.0%
!! TTATGCATATATGTATGTAT+AGG + chr8.2:24402980-24402999 None:intergenic 20.0%
!!! ATTATTTTTGGTTTGGATTT+TGG - chr8.2:24403398-24403417 MS.gene60168:CDS 20.0%
!!! TTATTTTTGGTTTGGATTTT+GGG - chr8.2:24403399-24403418 MS.gene60168:CDS 20.0%
!!! TTTTCAATTGAAGTTATTCT+GGG + chr8.2:24403273-24403292 None:intergenic 20.0%
!!! TTTTTCAATTGAAGTTATTC+TGG + chr8.2:24403274-24403293 None:intergenic 20.0%
! AAACATTAACAGAAGAGAAT+AGG - chr8.2:24403483-24403502 MS.gene60168:CDS 25.0%
! ATAGTTGTTATGATTACTTG+AGG + chr8.2:24402466-24402485 None:intergenic 25.0%
! ATGTTTCACAACATTTCTTT+AGG + chr8.2:24403469-24403488 None:intergenic 25.0%
! CATATACTATTGTAAATGGA+TGG - chr8.2:24403247-24403266 MS.gene60168:intron 25.0%
! CCAATATGAAGATTATGTAA+TGG + chr8.2:24403064-24403083 None:intergenic 25.0%
! CCATTACATAATCTTCATAT+TGG - chr8.2:24403061-24403080 MS.gene60168:intron 25.0%
! GAGATTATGATTATGATTAC+AGG + chr8.2:24402795-24402814 None:intergenic 25.0%
! TTATGATTACTTGAGGAATA+AGG + chr8.2:24402459-24402478 None:intergenic 25.0%
!!! TCAACTATGGTTTTAAATTG+CGG - chr8.2:24403029-24403048 MS.gene60168:intron 25.0%
CTTAGAGAAATTGCTCTTAT+TGG + chr8.2:24403645-24403664 None:intergenic 30.0%
GGTGATATATGATATTTACG+TGG + chr8.2:24403223-24403242 None:intergenic 30.0%
GTTTGTGTAGAAAAATCAAG+AGG + chr8.2:24402543-24402562 None:intergenic 30.0%
TATATGTATGTATAGGTACC+TGG + chr8.2:24402973-24402992 None:intergenic 30.0%
TGAATTAGAAATGGAAACGA+CGG - chr8.2:24402635-24402654 MS.gene60168:intron 30.0%
TGTTAGCAGTGAATTAGAAA+TGG - chr8.2:24402626-24402645 MS.gene60168:intron 30.0%
!!! TGCGAATATAACTGTTTTTG+AGG + chr8.2:24403133-24403152 None:intergenic 30.0%
AAGCATAGCAGATTGATCTT+TGG + chr8.2:24402739-24402758 None:intergenic 35.0%
AGGTGTTAGATTTAACTCTC+TGG + chr8.2:24402916-24402935 None:intergenic 35.0%
AGGTTCTTCATAGTAACTCT+TGG + chr8.2:24402523-24402542 None:intergenic 35.0%
CATTAACAGAAGAGAATAGG+AGG - chr8.2:24403486-24403505 MS.gene60168:CDS 35.0%
GATAAACCCAACGTTAAAGA+TGG + chr8.2:24402498-24402517 None:intergenic 35.0%
TTCTTCATAGTAACTCTTGG+TGG + chr8.2:24402520-24402539 None:intergenic 35.0%
TTGTTTCCTCTTTCTCTAGT+GGG - chr8.2:24402583-24402602 MS.gene60168:CDS 35.0%
! AAAGGAGGTGCAAGAATTAA+AGG - chr8.2:24403514-24403533 MS.gene60168:CDS 35.0%
! CTAAGCCTAGAATAAGTTGA+AGG + chr8.2:24402383-24402402 None:intergenic 35.0%
! TTTGTAACGTTGTTGTTGGA+TGG + chr8.2:24402435-24402454 None:intergenic 35.0%
AAAGCTGAAGCAAACAGAAG+TGG - chr8.2:24403433-24403452 MS.gene60168:CDS 40.0%
AGAGAATAGGAGGCTACAAA+AGG - chr8.2:24403496-24403515 MS.gene60168:CDS 40.0%
AGCTGAACCATCTTTAACGT+TGG - chr8.2:24402488-24402507 MS.gene60168:CDS 40.0%
CAAGATGCTAGTAACAACTC+AGG - chr8.2:24402357-24402376 MS.gene60168:CDS 40.0%
GCTGAACCATCTTTAACGTT+GGG - chr8.2:24402489-24402508 MS.gene60168:CDS 40.0%
GCTGCTGAAGAATTTGTGAA+GGG + chr8.2:24403683-24403702 None:intergenic 40.0%
GTACTTAAATTGCAGTACGC+AGG + chr8.2:24403160-24403179 None:intergenic 40.0%
GTGAAGGGATTGTAAAAGTG+AGG + chr8.2:24403668-24403687 None:intergenic 40.0%
TCAGGCCTTCAACTTATTCT+AGG - chr8.2:24402375-24402394 MS.gene60168:CDS 40.0%
TGCTGCTGAAGAATTTGTGA+AGG + chr8.2:24403684-24403703 None:intergenic 40.0%
! ACATGAAGGGCACATAGTAA+GGG + chr8.2:24403585-24403604 None:intergenic 40.0%
! AGGCTTTGTAACGTTGTTGT+TGG + chr8.2:24402439-24402458 None:intergenic 40.0%
! GTTGTTTCCTCTTTCTCTAG+TGG - chr8.2:24402582-24402601 MS.gene60168:CDS 40.0%
AGAAATGGAAACGACGGAGA+TGG - chr8.2:24402641-24402660 MS.gene60168:intron 45.0%
AGCAGGCATAGGCATATACA+AGG + chr8.2:24403558-24403577 None:intergenic 45.0%
ATCAGCGACGAAGATGAAGA+CGG - chr8.2:24402681-24402700 MS.gene60168:intron 45.0%
CACCTAGTCTCTCACATGAA+GGG + chr8.2:24403598-24403617 None:intergenic 45.0%
GAATAGGAGGCTACAAAAGG+AGG - chr8.2:24403499-24403518 MS.gene60168:CDS 45.0%
GCAGGCATAGGCATATACAA+GGG + chr8.2:24403557-24403576 None:intergenic 45.0%
TCTAACACCTCGACAAGTTG+AGG - chr8.2:24402926-24402945 MS.gene60168:intron 45.0%
TTCCTCTTTCTCTAGTGGGA+GGG - chr8.2:24402587-24402606 MS.gene60168:CDS 45.0%
TTTCCTCTTTCTCTAGTGGG+AGG - chr8.2:24402586-24402605 MS.gene60168:CDS 45.0%
! CACATGAAGGGCACATAGTA+AGG + chr8.2:24403586-24403605 None:intergenic 45.0%
! GTAACGTTGTTGTTGGATGG+TGG + chr8.2:24402432-24402451 None:intergenic 45.0%
!! TGTATAGGTACCTGGCTCTA+CGG + chr8.2:24402965-24402984 None:intergenic 45.0%
AACCAGACCTCAACTTGTCG+AGG + chr8.2:24402936-24402955 None:intergenic 50.0%
AAGCTTCTTCCTAGCTGCAG+TGG + chr8.2:24402709-24402728 None:intergenic 50.0%
CACATAGTAAGGGTAGCAGC+AGG + chr8.2:24403575-24403594 None:intergenic 50.0%
CCACCTAGTCTCTCACATGA+AGG + chr8.2:24403599-24403618 None:intergenic 50.0%
CCTTCATGTGAGAGACTAGG+TGG - chr8.2:24403596-24403615 MS.gene60168:CDS 50.0%
GAGGAAACAACGCTGTGATG+AGG + chr8.2:24402573-24402592 None:intergenic 50.0%
TCATGTGAGAGACTAGGTGG+TGG - chr8.2:24403599-24403618 MS.gene60168:CDS 50.0%
TGCCCTTCATGTGAGAGACT+AGG - chr8.2:24403593-24403612 MS.gene60168:CDS 50.0%
! GGATGGTGGTGTGTCTTGTT+TGG + chr8.2:24402418-24402437 None:intergenic 50.0%
!! CTAGGTGGTGGTGGTGTTAA+TGG - chr8.2:24403611-24403630 MS.gene60168:CDS 50.0%
CACCCTCCCACTAGAGAAAG+AGG + chr8.2:24402592-24402611 None:intergenic 55.0%
GTAAGGGTAGCAGCAGGCAT+AGG + chr8.2:24403569-24403588 None:intergenic 55.0%
! CACCTCGACAAGTTGAGGTC+TGG - chr8.2:24402931-24402950 MS.gene60168:intron 55.0%
! TGTGAGAGACTAGGTGGTGG+TGG - chr8.2:24403602-24403621 MS.gene60168:CDS 55.0%
!! GGTGGTGGTGGTGTTAATGG+TGG - chr8.2:24403614-24403633 MS.gene60168:CDS 55.0%
GGTTCCAGAACCGTAGAGCC+AGG - chr8.2:24402952-24402971 MS.gene60168:intron 60.0%
!! AAGACGGTGCCACTGCAGCT+AGG - chr8.2:24402697-24402716 MS.gene60168:intron 60.0%
!! GGTACCTGGCTCTACGGTTC+TGG + chr8.2:24402959-24402978 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 24402342 24403709 24402342 ID=MS.gene60168
chr8.2 mRNA 24402342 24403709 24402342 ID=MS.gene60168.t1;Parent=MS.gene60168
chr8.2 exon 24403257 24403709 24403257 ID=MS.gene60168.t1.exon1;Parent=MS.gene60168.t1
chr8.2 CDS 24403257 24403709 24403257 ID=cds.MS.gene60168.t1;Parent=MS.gene60168.t1
chr8.2 exon 24403078 24403157 24403078 ID=MS.gene60168.t1.exon2;Parent=MS.gene60168.t1
chr8.2 CDS 24403078 24403157 24403078 ID=cds.MS.gene60168.t1;Parent=MS.gene60168.t1
chr8.2 exon 24402342 24402621 24402342 ID=MS.gene60168.t1.exon3;Parent=MS.gene60168.t1
chr8.2 CDS 24402342 24402621 24402342 ID=cds.MS.gene60168.t1;Parent=MS.gene60168.t1
Gene Sequence

>MS.gene60168

ATGGGTCTTAATAATCAAGATGCTAGTAACAACTCAGGCCTTCAACTTATTCTAGGCTTAGCTCTTACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAGCCTTATTCCTCAAGTAATCATAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCCACCAAGAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAACTCACCTCATCACAGCGTTGTTTCCTCTTTCTCTAGTGGGAGGGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACGACGGAGATGGAGAGAGTTTCTTCGAGAATCAGCGACGAAGATGAAGACGGTGCCACTGCAGCTAGGAAGAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAAGAACACAGCACTCTCAATCCTGTAATCATAATCATAATCTCTTTCTATAGTTACATATCTTATTATTATTATTTTCATTTTTTTCCATTTATTTATCAAATTTTTGTCATGGATTTACAGAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTAACACCTCGACAAGTTGAGGTCTGGTTCCAGAACCGTAGAGCCAGGTACCTATACATACATATATGCATAATATATTTAATTTATTAAATTAAATTAAACTCAACTATGGTTTTAAATTGCGGTTGCAGTTACCATTACATAATCTTCATATTGGTAGAAACTGCAACGACTGCACTGTAATTGTGATGTCGTTGCAGAAACCTCAAAAACAGTTATATTCGCAATTGCCTGCGTACTGCAATTTAAGTACTACAGCCAATGAAATATTATCTTCAAATTAATTAAGGGTACCACGTAAATATCATATATCACCAATACATATACTATTGTAAATGGATGGCCCAGAATAACTTCAATTGAAAAAAAAATTTAATCATTATTCATGTATTTACGTACACATATTATAAATGTGTAGACAAAAAAAATTATGGGTTTGATAAATATATATTAAATATATGTAATATTAAGATTATTTTTGGTTTGGATTTTGGGTGTAACAGAACAAAGCTGAAGCAAACAGAAGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGAAGAGAATAGGAGGCTACAAAAGGAGGTGCAAGAATTAAAGGCACTAAAACTAGCACAACCCTTGTATATGCCTATGCCTGCTGCTACCCTTACTATGTGCCCTTCATGTGAGAGACTAGGTGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGAGCAATTTCTCTAAGCCTCACTTTTACAATCCCTTCACAAATTCTTCAGCAGCATGTTGA
Protein sequence

>MS.gene60168.t1

MGLNNQDASNNSGLQLILGLALTLTKQDTPPSNNNVTKPYSSSNHNNYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEMERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGGGVNGGSSNKSNFSKPHFYNPFTNSSAAC