AlfalfaGEDB | MS.gene60182

M. sativa cultivar XinJiangDaYe / MS.gene60182

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60182.t1	XP_003608557.1	95.4	174	8	0	1	174	1	174	6.90E-86	326.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60182.t1	G7JF85	95.4	174	8	0	1	174	1	174	4.9e-86	326.6

TFs/TRs:

Gene ID	Type	Classification
MS.gene60182.t1	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60182.t1	MTR_4g097440	95.402	174	8	0	1	174	1	174	4.04e-123	344
MS.gene60182.t1	MTR_5g015090	56.897	174	58	6	1	174	1	157	7.43e-58	178
MS.gene60182.t1	MTR_3g103360	47.619	84	44	0	71	154	52	135	2.68e-18	77.0
MS.gene60182.t1	MTR_4g070860	41.935	93	54	0	62	154	17	109	3.19e-17	74.7
MS.gene60182.t1	MTR_1g017570	65.152	66	23	0	74	139	59	124	5.28e-17	73.9
MS.gene60182.t1	MTR_1g022495	38.739	111	66	1	44	154	1	109	8.16e-16	71.2
MS.gene60182.t1	MTR_3g117120	41.053	95	49	1	67	154	15	109	2.58e-15	69.7
MS.gene60182.t1	MTR_7g029400	34.091	132	75	2	16	147	37	156	7.74e-15	69.3
MS.gene60182.t1	MTR_6g016375	43.182	88	50	0	63	150	78	165	1.82e-14	68.6
MS.gene60182.t1	MTR_8g015250	44.706	85	47	0	63	147	62	146	1.82e-14	68.2
MS.gene60182.t1	MTR_8g086020	38.554	83	51	0	72	154	32	114	3.23e-13	64.3
MS.gene60182.t1	MTR_7g017880	41.176	85	50	0	63	147	75	159	3.70e-13	64.7
MS.gene60182.t1	MTR_1g087040	33.333	96	61	1	72	164	24	119	6.42e-12	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60182.t1	AT2G22850	35.047	214	85	5	1	160	1	214	1.85e-30	110
MS.gene60182.t1	AT2G22850	35.047	214	85	5	1	160	1	214	1.85e-30	110
MS.gene60182.t1	AT3G49760	37.654	162	90	4	1	158	1	155	8.53e-29	104
MS.gene60182.t1	AT4G37730	35.681	213	72	6	1	148	58	270	1.44e-25	100
MS.gene60182.t1	AT2G18160	45.783	83	45	0	72	154	28	110	5.00e-17	74.7
MS.gene60182.t1	AT5G38800	35.526	152	73	3	2	150	18	147	8.20e-17	73.9
MS.gene60182.t1	AT1G75390	40.860	93	55	0	62	154	28	120	5.30e-16	72.0
MS.gene60182.t1	AT3G30530	34.000	150	88	2	1	150	18	156	2.46e-15	70.1
MS.gene60182.t1	AT4G34590	38.372	86	53	0	69	154	21	106	1.08e-13	65.5
MS.gene60182.t1	AT1G75390	43.590	78	44	0	62	139	28	105	1.41e-13	64.3
MS.gene60182.t1	AT1G13600	40.217	92	48	1	63	154	74	158	3.28e-13	65.1
MS.gene60182.t1	AT5G15830	42.169	83	48	0	71	153	70	152	3.96e-13	64.7
MS.gene60182.t1	AT2G04038	43.299	97	44	2	64	157	60	148	4.24e-12	61.6
MS.gene60182.t1	AT3G62420	37.895	95	57	2	62	154	10	104	8.16e-12	60.5
MS.gene60182.t1	AT1G59530	37.241	145	82	3	29	172	10	146	3.39e-11	58.5
MS.gene60182.t1	AT5G49450	34.524	84	55	0	72	155	13	96	4.85e-11	58.2

Find 0 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GAAACAAAATGAATTGTAAC+CGG	+	32965:29961-29980	None:intergenic	25.0%
!	GTTTGATATCATCTGAAAAT+AGG	+	32965:29700-29719	None:intergenic	25.0%
!!	CAACAACTTTACTCAAATTT+TGG	-	32965:30048-30067	MS.gene60182:CDS	25.0%
	AAAGACATGTTGAGAATCTA+AGG	-	32965:29891-29910	MS.gene60182:CDS	30.0%
	AACTTGAAGTGATAGGTTTA+GGG	+	32965:29730-29749	None:intergenic	30.0%
!!	GAGTAAAGTTGTTGATTCTT+TGG	+	32965:30042-30061	None:intergenic	30.0%
!!	TCATTTTGTTTCACTTGAAC+CGG	-	32965:29969-29988	MS.gene60182:CDS	30.0%
	AAAACCGGGAAATGAAAAAC+CGG	-	32965:29939-29958	MS.gene60182:CDS	35.0%
	ACAAGTGTAGAATGGAAAAC+CGG	-	32965:29924-29943	MS.gene60182:CDS	35.0%
	ATGGACATGTAACACTACTA+TGG	-	32965:30102-30121	MS.gene60182:CDS	35.0%
	GAACTTGAAGTGATAGGTTT+AGG	+	32965:29731-29750	None:intergenic	35.0%
	TGGAGAAAGGTTGAAATTGT+TGG	+	32965:30078-30097	None:intergenic	35.0%
!	AAACCTATCACTTCAAGTTC+CGG	-	32965:29731-29750	MS.gene60182:CDS	35.0%
!!	ATTCATTTTCGGTTCGTATC+CGG	+	32965:29991-30010	None:intergenic	35.0%
	AATAGGTCGTGAAAATCCCA+CGG	+	32965:29683-29702	None:intergenic	40.0%
	ACCTCATGAGAAACGTAAAC+CGG	-	32965:29772-29791	MS.gene60182:CDS	40.0%
	AGTGTTACATGTCCATGAAG+TGG	+	32965:30098-30117	None:intergenic	40.0%
	CAAGTGTAGAATGGAAAACC+GGG	-	32965:29925-29944	MS.gene60182:CDS	40.0%
	CCAGTTGAACAAGTGTAGAA+TGG	-	32965:29916-29935	MS.gene60182:CDS	40.0%
	CCATTCTACACTTGTTCAAC+TGG	+	32965:29919-29938	None:intergenic	40.0%
	GAACCGAAAATGAATGGCTT+CGG	-	32965:29996-30015	MS.gene60182:CDS	40.0%
	GACATGTAACACTACTATGG+TGG	-	32965:30105-30124	MS.gene60182:CDS	40.0%
	GGATACGAACCGAAAATGAA+TGG	-	32965:29990-30009	MS.gene60182:CDS	40.0%
	GTTTACGTTTCTCATGAGGT+TGG	+	32965:29772-29791	None:intergenic	40.0%
	TTCAACCTTTCTCCACTTCA+TGG	-	32965:30083-30102	MS.gene60182:CDS	40.0%
!	AGACCGAAGCCATTCATTTT+CGG	+	32965:30002-30021	None:intergenic	40.0%
!	GTTGATTCTTTGGTTCAGCA+TGG	+	32965:30032-30051	None:intergenic	40.0%
!!	AGAATGGATTGTCGAGAAGA+GGG	+	32965:29637-29656	None:intergenic	40.0%
!!	GTAACCGGTTTTTCATTTCC+CGG	+	32965:29946-29965	None:intergenic	40.0%
!!	TTGGTTTGGTTCATCTGAAC+CGG	+	32965:29753-29772	None:intergenic	40.0%
	CATGTCCATGAAGTGGAGAA+AGG	+	32965:30091-30110	None:intergenic	45.0%
	GAACCGGAACTTGAAGTGAT+AGG	+	32965:29737-29756	None:intergenic	45.0%
	TCCGGTTTACGTTTCTCATG+AGG	+	32965:29776-29795	None:intergenic	45.0%
!	AGTGATAGGTTTAGGGCTTG+AGG	+	32965:29723-29742	None:intergenic	45.0%
!	CGTTTCTCATGAGGTTGGTT+TGG	+	32965:29767-29786	None:intergenic	45.0%
!	GTGATAGGTTTAGGGCTTGA+GGG	+	32965:29722-29741	None:intergenic	45.0%
!!	GAGAATGGATTGTCGAGAAG+AGG	+	32965:29638-29657	None:intergenic	45.0%
	AATCCATTCTCCGCCTTCCA+CGG	-	32965:29647-29666	MS.gene60182:CDS	50.0%
	ACTCAGACGAACCGAACCAA+GGG	-	32965:29795-29814	MS.gene60182:CDS	50.0%
	TGGATTGTCGAGAAGAGGGT+CGG	+	32965:29633-29652	None:intergenic	50.0%
	AGGTCGTGAAAATCCCACGG+CGG	+	32965:29680-29699	None:intergenic	55.0%
	ATTGTCGAGAAGAGGGTCGG+AGG	+	32965:29630-29649	None:intergenic	55.0%
	CCGACGCATGATATCGAACC+GGG	-	32965:29838-29857	MS.gene60182:CDS	55.0%
	CTCAGACGAACCGAACCAAG+GGG	-	32965:29796-29815	MS.gene60182:CDS	55.0%
	CTTACGCATCCGTGACCTTC+GGG	+	32965:29870-29889	None:intergenic	55.0%
	GACTCAGACGAACCGAACCA+AGG	-	32965:29794-29813	MS.gene60182:CDS	55.0%
	GCCGACGCATGATATCGAAC+CGG	-	32965:29837-29856	MS.gene60182:CDS	55.0%
	GCTTACGCATCCGTGACCTT+CGG	+	32965:29871-29890	None:intergenic	55.0%
	TTGTCGAGAAGAGGGTCGGA+GGG	+	32965:29629-29648	None:intergenic	55.0%
!	CCCGGTTCGATATCATGCGT+CGG	+	32965:29841-29860	None:intergenic	55.0%
!!	TGGTTCGGTTCGTCTGAGTC+CGG	+	32965:29794-29813	None:intergenic	55.0%
	AGACGAACCGAACCAAGGGG+CGG	-	32965:29799-29818	MS.gene60182:CDS	60.0%
	GGGAATCAGCCCGAAGGTCA+CGG	-	32965:29858-29877	MS.gene60182:CDS	60.0%
	GGTCGTGAAAATCCCACGGC+GGG	+	32965:29679-29698	None:intergenic	60.0%
	TCATCGACCGCCCCTTGGTT+CGG	+	32965:29809-29828	None:intergenic	60.0%
!	GTGACCTTCGGGCTGATTCC+CGG	+	32965:29859-29878	None:intergenic	60.0%
	AAGAGGGTCGGAGGGAGGGA+GGG	+	32965:29621-29640	None:intergenic	65.0%
	CCACCGTGGAAGGCGGAGAA+TGG	+	32965:29653-29672	None:intergenic	65.0%
	CCATTCTCCGCCTTCCACGG+TGG	-	32965:29650-29669	MS.gene60182:CDS	65.0%
	CGAACCGGGAATCAGCCCGA+AGG	-	32965:29852-29871	MS.gene60182:CDS	65.0%
	CGAGAAGAGGGTCGGAGGGA+GGG	+	32965:29625-29644	None:intergenic	65.0%
	CGGGAAACCACCGTGGAAGG+CGG	+	32965:29660-29679	None:intergenic	65.0%
	TCGAGAAGAGGGTCGGAGGG+AGG	+	32965:29626-29645	None:intergenic	65.0%
	TTCGCTCATCGACCGCCCCT+TGG	+	32965:29814-29833	None:intergenic	65.0%
	CCACGGTGGTTTCCCGCCGT+GGG	-	32965:29664-29683	MS.gene60182:CDS	70.0%
	CGGCGGGAAACCACCGTGGA+AGG	+	32965:29663-29682	None:intergenic	70.0%
	GAAGAGGGTCGGAGGGAGGG+AGG	+	32965:29622-29641	None:intergenic	70.0%
	TCCACGGTGGTTTCCCGCCG+TGG	-	32965:29663-29682	MS.gene60182:CDS	70.0%
	AGGGTCGGAGGGAGGGAGGG+TGG	+	32965:29618-29637	None:intergenic	75.0%
	CCCACGGCGGGAAACCACCG+TGG	+	32965:29667-29686	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
32965	gene	29608	30132	29608	ID=MS.gene60182
32965	mRNA	29608	30132	29608	ID=MS.gene60182.t1;Parent=MS.gene60182
32965	exon	29608	30132	29608	ID=MS.gene60182.t1.exon1;Parent=MS.gene60182.t1
32965	CDS	29608	30132	29608	ID=cds.MS.gene60182.t1;Parent=MS.gene60182.t1

Gene Sequence

>MS.gene60182

ATGCTCTCCACCCTCCCTCCCTCCGACCCTCTTCTCGACAATCCATTCTCCGCCTTCCACGGTGGTTTCCCGCCGTGGGATTTTCACGACCTATTTTCAGATGATATCAAACCCTCAAGCCCTAAACCTATCACTTCAAGTTCCGGTTCAGATGAACCAAACCAACCTCATGAGAAACGTAAACCGGACTCAGACGAACCGAACCAAGGGGCGGTCGATGAGCGAAAGCGCCGACGCATGATATCGAACCGGGAATCAGCCCGAAGGTCACGGATGCGTAAGCAAAGACATGTTGAGAATCTAAGGAACCAGTTGAACAAGTGTAGAATGGAAAACCGGGAAATGAAAAACCGGTTACAATTCATTTTGTTTCACTTGAACCGGATACGAACCGAAAATGAATGGCTTCGGTCTGAACGAACCATGCTGAACCAAAGAATCAACAACTTTACTCAAATTTTGGTTTGCCAACAATTTCAACCTTTCTCCACTTCATGGACATGTAACACTACTATGGTGGAATAA

Protein sequence

>MS.gene60182.t1

MLSTLPPSDPLLDNPFSAFHGGFPPWDFHDLFSDDIKPSSPKPITSSSGSDEPNQPHEKRKPDSDEPNQGAVDERKRRRMISNRESARRSRMRKQRHVENLRNQLNKCRMENREMKNRLQFILFHLNRIRTENEWLRSERTMLNQRINNFTQILVCQQFQPFSTSWTCNTTMVE