Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60203.t1 | XP_013457503.1 | 97.2 | 254 | 6 | 1 | 1 | 253 | 1 | 254 | 1.10E-118 | 436.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60203.t1 | Q9FJW5 | 44.7 | 253 | 130 | 2 | 1 | 253 | 1 | 243 | 1.1e-45 | 185.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60203.t1 | G7JE28 | 97.2 | 254 | 6 | 1 | 1 | 253 | 1 | 254 | 7.8e-119 | 436.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60203.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60203.t1 | MTR_4g097130 | 98.382 | 309 | 4 | 1 | 1 | 308 | 1 | 309 | 0.0 | 608 |
| MS.gene60203.t1 | MTR_4g097130 | 98.377 | 308 | 4 | 1 | 1 | 307 | 1 | 308 | 0.0 | 605 |
| MS.gene60203.t1 | MTR_4g097130 | 96.805 | 313 | 4 | 2 | 1 | 307 | 1 | 313 | 0.0 | 598 |
| MS.gene60203.t1 | MTR_5g015340 | 65.696 | 309 | 88 | 6 | 1 | 307 | 1 | 293 | 4.46e-105 | 308 |
| MS.gene60203.t1 | MTR_5g015340 | 65.696 | 309 | 88 | 6 | 1 | 307 | 1 | 293 | 4.46e-105 | 308 |
| MS.gene60203.t1 | MTR_5g015340 | 65.806 | 310 | 88 | 6 | 1 | 308 | 1 | 294 | 9.18e-105 | 311 |
| MS.gene60203.t1 | MTR_2g031870 | 45.276 | 254 | 120 | 6 | 1 | 250 | 1 | 239 | 5.15e-66 | 209 |
| MS.gene60203.t1 | MTR_8g494240 | 44.531 | 256 | 117 | 6 | 1 | 250 | 1 | 237 | 1.00e-63 | 203 |
| MS.gene60203.t1 | MTR_8g494240 | 44.531 | 256 | 117 | 6 | 1 | 250 | 1 | 237 | 1.05e-63 | 203 |
| MS.gene60203.t1 | MTR_8g494240 | 44.531 | 256 | 117 | 6 | 1 | 250 | 1 | 237 | 2.58e-62 | 202 |
| MS.gene60203.t1 | MTR_8g092810 | 39.850 | 266 | 134 | 7 | 1 | 254 | 1 | 252 | 2.92e-54 | 183 |
| MS.gene60203.t1 | MTR_2g031870 | 37.795 | 254 | 113 | 7 | 1 | 250 | 1 | 213 | 1.27e-44 | 153 |
| MS.gene60203.t1 | MTR_0095s0040 | 49.704 | 169 | 65 | 5 | 1 | 163 | 1 | 155 | 2.12e-42 | 146 |
| MS.gene60203.t1 | MTR_1g041765 | 69.048 | 84 | 25 | 1 | 1 | 84 | 1 | 83 | 1.02e-32 | 120 |
| MS.gene60203.t1 | MTR_8g018410 | 36.071 | 280 | 153 | 8 | 1 | 280 | 1 | 254 | 1.07e-32 | 122 |
| MS.gene60203.t1 | MTR_2g099610 | 37.500 | 216 | 114 | 5 | 1 | 201 | 1 | 210 | 3.07e-32 | 121 |
| MS.gene60203.t1 | MTR_1g088180 | 37.097 | 124 | 68 | 5 | 136 | 256 | 296 | 412 | 3.07e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60203.t1 | AT5G67580 | 50.000 | 310 | 142 | 4 | 1 | 308 | 1 | 299 | 8.31e-72 | 224 |
| MS.gene60203.t1 | AT5G67580 | 50.000 | 310 | 142 | 4 | 1 | 308 | 1 | 299 | 8.31e-72 | 224 |
| MS.gene60203.t1 | AT3G49850 | 47.386 | 306 | 143 | 6 | 1 | 304 | 1 | 290 | 4.23e-65 | 207 |
| MS.gene60203.t1 | AT3G49850 | 47.386 | 306 | 143 | 6 | 1 | 304 | 1 | 290 | 4.23e-65 | 207 |
| MS.gene60203.t1 | AT1G49950 | 43.191 | 257 | 124 | 8 | 1 | 252 | 1 | 240 | 5.71e-61 | 196 |
| MS.gene60203.t1 | AT1G49950 | 43.191 | 257 | 124 | 8 | 1 | 252 | 1 | 240 | 5.71e-61 | 196 |
| MS.gene60203.t1 | AT1G49950 | 43.191 | 257 | 124 | 8 | 1 | 252 | 1 | 240 | 5.71e-61 | 196 |
| MS.gene60203.t1 | AT1G72740 | 31.959 | 291 | 145 | 7 | 1 | 280 | 1 | 249 | 2.36e-30 | 116 |
| MS.gene60203.t1 | AT1G72740 | 31.773 | 299 | 141 | 9 | 1 | 280 | 1 | 255 | 3.80e-28 | 110 |
| MS.gene60203.t1 | AT1G17520 | 31.802 | 283 | 165 | 6 | 1 | 280 | 1 | 258 | 4.91e-28 | 110 |
| MS.gene60203.t1 | AT1G17520 | 32.155 | 283 | 170 | 7 | 1 | 280 | 1 | 264 | 3.17e-27 | 108 |
| MS.gene60203.t1 | AT1G17520 | 32.042 | 284 | 164 | 7 | 1 | 280 | 1 | 259 | 1.08e-26 | 106 |
| MS.gene60203.t1 | AT1G17520 | 32.394 | 284 | 169 | 8 | 1 | 280 | 1 | 265 | 7.94e-26 | 104 |
Find 77 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAGCCCCTGACAATTTC+TGG | 0.156688 | 8.1:-25472203 | MS.gene60203:CDS |
| AATGCAAAATGCTTCATATT+TGG | 0.195627 | 8.1:-25469901 | MS.gene60203:CDS |
| TTGATAGCTCTGCCTCAATT+TGG | 0.196523 | 8.1:+25470092 | None:intergenic |
| CAATTGGTTATTGTCAGTTT+TGG | 0.201241 | 8.1:+25472265 | None:intergenic |
| ATTCGAACGCGTACGCAAAA+TGG | 0.224697 | 8.1:+25472504 | None:intergenic |
| GACAATAACTTTCTAAGATT+TGG | 0.247003 | 8.1:+25471049 | None:intergenic |
| CTCCACCTCCGGAGAATCTT+TGG | 0.268223 | 8.1:+25470147 | None:intergenic |
| TGTATTGTGAACAGGATAAA+TGG | 0.295045 | 8.1:-25472361 | MS.gene60203:intron |
| TGATAGCTCTGCCTCAATTT+GGG | 0.303115 | 8.1:+25470093 | None:intergenic |
| ATGTTCCACTACAAATAGTT+AGG | 0.338025 | 8.1:+25472156 | None:intergenic |
| TCAAACACGGGGCTGGAAAA+TGG | 0.376865 | 8.1:-25472558 | MS.gene60203:CDS |
| TCTGCAGTCCATTTCTGCTT+AGG | 0.379164 | 8.1:+25472610 | None:intergenic |
| CTACTTTACTCAAGGCCAAT+TGG | 0.386042 | 8.1:+25472249 | None:intergenic |
| ATATAAATGTCACAGCAATA+TGG | 0.388272 | 8.1:-25472334 | MS.gene60203:CDS |
| CGCCTCCCTAGCTGCTGCTT+CGG | 0.390489 | 8.1:+25469988 | None:intergenic |
| CTACAAATAGTTAGGGGCTT+AGG | 0.415247 | 8.1:+25472164 | None:intergenic |
| ATGTTCCACCAGAAATTGTC+AGG | 0.418565 | 8.1:+25472195 | None:intergenic |
| TTCTCAGAGACCGCTGAACT+TGG | 0.424839 | 8.1:+25470208 | None:intergenic |
| GAAGAAGCGGCGTTGAAAGC+TGG | 0.427269 | 8.1:-25472586 | MS.gene60203:CDS |
| TGGGTGCTCCTAAGCAGAAA+TGG | 0.427716 | 8.1:-25472618 | MS.gene60203:CDS |
| TGCTGCTTCGGCCTGTGCAA+TGG | 0.434469 | 8.1:+25470000 | None:intergenic |
| TATAAATGTCACAGCAATAT+GGG | 0.435123 | 8.1:-25472333 | MS.gene60203:CDS |
| GGGAGACAATAATGTATTAG+AGG | 0.441902 | 8.1:-25471454 | MS.gene60203:CDS |
| AATAACTTTCTAAGATTTGG+TGG | 0.446528 | 8.1:+25471052 | None:intergenic |
| GCAGCCTTGTCAGAACCCTT+TGG | 0.463786 | 8.1:+25471411 | None:intergenic |
| AGCTGCAAAAGCAGTTGCAG+AGG | 0.469233 | 8.1:-25470032 | MS.gene60203:CDS |
| CGAAGCAGCAGCTAGGGAGG+CGG | 0.477225 | 8.1:-25469987 | MS.gene60203:CDS |
| CAAAACTGACAATAACCAAT+TGG | 0.479938 | 8.1:-25472264 | MS.gene60203:CDS |
| GGAGTAGTCAAACACGGGGC+TGG | 0.481269 | 8.1:-25472565 | MS.gene60203:CDS |
| CTTTGCAAAAGCAGCGATGA+AGG | 0.481859 | 8.1:-25469930 | MS.gene60203:CDS |
| GTCCAAAGATTCTCCGGAGG+TGG | 0.481885 | 8.1:-25470149 | MS.gene60203:CDS |
| ACAGGCCGAAGCAGCAGCTA+GGG | 0.483254 | 8.1:-25469993 | MS.gene60203:CDS |
| GGCCGAAGCAGCAGCTAGGG+AGG | 0.499766 | 8.1:-25469990 | MS.gene60203:CDS |
| TGTTCCACTACAAATAGTTA+GGG | 0.500173 | 8.1:+25472157 | None:intergenic |
| AGCGAGGTCCAAAGATTCTC+CGG | 0.502665 | 8.1:-25470155 | MS.gene60203:CDS |
| TCACACATCTTCTCCACCTC+CGG | 0.506821 | 8.1:+25470136 | None:intergenic |
| CACAGGCCGAAGCAGCAGCT+AGG | 0.511915 | 8.1:-25469994 | MS.gene60203:CDS |
| TGCCATTGCTTCTTACATAG+AGG | 0.516855 | 8.1:-25471391 | MS.gene60203:intron |
| GTCAATATGAAGGAGCCAAA+GGG | 0.526790 | 8.1:-25471426 | MS.gene60203:CDS |
| GTTCAAAAGAACAAGTATCA+AGG | 0.540828 | 8.1:-25472121 | MS.gene60203:intron |
| CCTTTCAAAATCCCAAATTG+AGG | 0.542802 | 8.1:-25470104 | MS.gene60203:CDS |
| TACCTCTATGTAAGAAGCAA+TGG | 0.545469 | 8.1:+25471389 | None:intergenic |
| TCACAGCAATATGGGGATCC+CGG | 0.546612 | 8.1:-25472325 | MS.gene60203:CDS |
| GGCAGAAGTTGCCATTGCAC+AGG | 0.551573 | 8.1:-25470011 | MS.gene60203:CDS |
| CGCAAAATGGAACTGAACTC+AGG | 0.555443 | 8.1:+25472517 | None:intergenic |
| AAGCTCTTCTCTGATGCTTG+TGG | 0.556765 | 8.1:-25470179 | MS.gene60203:CDS |
| TTTCTGCTTAGGAGCACCCA+TGG | 0.559262 | 8.1:+25472621 | None:intergenic |
| AGAGGCTATTGTCAATATGA+AGG | 0.562785 | 8.1:-25471436 | MS.gene60203:CDS |
| CTCTGATGCTTGTGGAAGCG+AGG | 0.566860 | 8.1:-25470171 | MS.gene60203:CDS |
| TGTCAATATGAAGGAGCCAA+AGG | 0.567981 | 8.1:-25471427 | MS.gene60203:CDS |
| GTCAGCAAAATTGCAGCAGA+TGG | 0.568574 | 8.1:-25471029 | MS.gene60203:CDS |
| GACAAGTGGCAAAATAGTCC+AGG | 0.570447 | 8.1:-25471005 | MS.gene60203:intron |
| AAAATGGCGCACAATACTCA+TGG | 0.571706 | 8.1:-25472542 | MS.gene60203:CDS |
| TCAGCGGTCTCTGAGAAAAG+AGG | 0.571845 | 8.1:-25470202 | MS.gene60203:CDS |
| ACGTTGAACTACTTTACTCA+AGG | 0.573317 | 8.1:+25472241 | None:intergenic |
| GGCAGAGCTATCAAAAGTGA+GGG | 0.588740 | 8.1:-25470083 | MS.gene60203:CDS |
| CAAAATTATGCCAAGTTCAG+CGG | 0.601681 | 8.1:-25470218 | MS.gene60203:CDS |
| AAGCCCCTAACTATTTGTAG+TGG | 0.611891 | 8.1:-25472161 | MS.gene60203:CDS |
| GCGTTCGAATGTAGATCTCA+AGG | 0.619214 | 8.1:-25472491 | MS.gene60203:intron |
| AAGCTGGAGTAGTCAAACAC+GGG | 0.628346 | 8.1:-25472570 | MS.gene60203:CDS |
| AGGCAGAGCTATCAAAAGTG+AGG | 0.628730 | 8.1:-25470084 | MS.gene60203:CDS |
| GATTGCAGAAGCTGAAGCTG+AGG | 0.636628 | 8.1:-25469963 | MS.gene60203:CDS |
| GGGGATGTCAGCTCAAGAGG+CGG | 0.637055 | 8.1:-25470062 | MS.gene60203:CDS |
| AAGCCCCTGACAATTTCTGG+TGG | 0.637720 | 8.1:-25472200 | MS.gene60203:CDS |
| GGAGCCAAAGGGTTCTGACA+AGG | 0.637821 | 8.1:-25471415 | MS.gene60203:CDS |
| TTGCAGCAGATGGTGACAAG+TGG | 0.648634 | 8.1:-25471019 | MS.gene60203:CDS |
| ATAAATGTCACAGCAATATG+GGG | 0.648999 | 8.1:-25472332 | MS.gene60203:CDS |
| TGTTCCACCAGAAATTGTCA+GGG | 0.649357 | 8.1:+25472196 | None:intergenic |
| ATGGACTGCAGAAGAAGAAG+CGG | 0.652524 | 8.1:-25472599 | MS.gene60203:CDS |
| ATTGTGAACAGGATAAATGG+AGG | 0.664041 | 8.1:-25472358 | MS.gene60203:intron |
| CAGAGCTATCAAAAGTGAGG+GGG | 0.676061 | 8.1:-25470081 | MS.gene60203:CDS |
| AAAGCTGGAGTAGTCAAACA+CGG | 0.681254 | 8.1:-25472571 | MS.gene60203:CDS |
| GTTCCACTACAAATAGTTAG+GGG | 0.682877 | 8.1:+25472158 | None:intergenic |
| GCAGAGCTATCAAAAGTGAG+GGG | 0.684532 | 8.1:-25470082 | MS.gene60203:CDS |
| GTTCCACCAGAAATTGTCAG+GGG | 0.692592 | 8.1:+25472197 | None:intergenic |
| GAGGTCCAAAGATTCTCCGG+AGG | 0.723417 | 8.1:-25470152 | MS.gene60203:CDS |
| AGCTGGAGTAGTCAAACACG+GGG | 0.727088 | 8.1:-25472569 | MS.gene60203:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAATTGTTACCTATA+AGG | - | chr8.1:25470790-25470809 | MS.gene60203:intron | 15.0% |
| !! | AAAAAATTCAGATTCAAACT+AGG | + | chr8.1:25470634-25470653 | None:intergenic | 20.0% |
| !! | AATAAATTATTTGATCTTGC+TGG | - | chr8.1:25472052-25472071 | MS.gene60203:intron | 20.0% |
| !! | CAATTCAAATAAAACTATCA+CGG | + | chr8.1:25472191-25472210 | None:intergenic | 20.0% |
| !! | GTTGACAATGATAAATAAAT+TGG | - | chr8.1:25472094-25472113 | MS.gene60203:intron | 20.0% |
| !! | TAAGCATGTTGAAAATATAA+GGG | - | chr8.1:25470758-25470777 | MS.gene60203:intron | 20.0% |
| !! | TCTATTCATTTGTGAAAATT+TGG | + | chr8.1:25470604-25470623 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTATAGTTTTTCT+AGG | + | chr8.1:25471798-25471817 | None:intergenic | 20.0% |
| ! | AAGCATGTTGAAAATATAAG+GGG | - | chr8.1:25470759-25470778 | MS.gene60203:intron | 25.0% |
| ! | AATGCAAAATGCTTCATATT+TGG | - | chr8.1:25472616-25472635 | MS.gene60203:CDS | 25.0% |
| ! | AATTACTTTCAATGCAATGA+CGG | + | chr8.1:25471403-25471422 | None:intergenic | 25.0% |
| ! | ATATAAATGTCACAGCAATA+TGG | - | chr8.1:25470183-25470202 | MS.gene60203:CDS | 25.0% |
| ! | CAACTGAATATAAAATTACC+TGG | + | chr8.1:25471533-25471552 | None:intergenic | 25.0% |
| ! | CCCAACTAATAAACAAAATT+CGG | - | chr8.1:25472220-25472239 | MS.gene60203:CDS | 25.0% |
| ! | GTAAGCATGTTGAAAATATA+AGG | - | chr8.1:25470757-25470776 | MS.gene60203:intron | 25.0% |
| ! | TAAAAAAGATGGTAGAAACT+TGG | - | chr8.1:25471676-25471695 | MS.gene60203:intron | 25.0% |
| ! | TATAAATGTCACAGCAATAT+GGG | - | chr8.1:25470184-25470203 | MS.gene60203:CDS | 25.0% |
| ! | TGAAAATATAAGGGGAAAAA+AGG | - | chr8.1:25470767-25470786 | MS.gene60203:intron | 25.0% |
| ! | TTAAAAGTTACCTGTGATTT+AGG | - | chr8.1:25471312-25471331 | MS.gene60203:intron | 25.0% |
| !! | AATTGGTTATTGTCAGTTTT+GGG | + | chr8.1:25470254-25470273 | None:intergenic | 25.0% |
| !! | ACTTTTCATTTCATCTCTAT+AGG | - | chr8.1:25471428-25471447 | MS.gene60203:CDS | 25.0% |
| !! | ATGAAACACTTTAGTCTTTA+AGG | + | chr8.1:25472014-25472033 | None:intergenic | 25.0% |
| !! | CAGGTAATTTTATATTCAGT+TGG | - | chr8.1:25471531-25471550 | MS.gene60203:intron | 25.0% |
| !! | TATCTTTATGTATTTCTGCT+AGG | + | chr8.1:25470070-25470089 | None:intergenic | 25.0% |
| !!! | AATAACTTTCTAAGATTTGG+TGG | + | chr8.1:25471468-25471487 | None:intergenic | 25.0% |
| !!! | ACCGAATTTTGTTTATTAGT+TGG | + | chr8.1:25472224-25472243 | None:intergenic | 25.0% |
| !!! | CCGAATTTTGTTTATTAGTT+GGG | + | chr8.1:25472223-25472242 | None:intergenic | 25.0% |
| !!! | GACAATAACTTTCTAAGATT+TGG | + | chr8.1:25471471-25471490 | None:intergenic | 25.0% |
| !!! | TGATTGCATTATGCTTTTTT+GGG | + | chr8.1:25471252-25471271 | None:intergenic | 25.0% |
| ACTAGACCTAATTACTCATA+AGG | + | chr8.1:25470555-25470574 | None:intergenic | 30.0% | |
| AGAAATTATCTCCATGATTG+TGG | - | chr8.1:25470466-25470485 | MS.gene60203:intron | 30.0% | |
| AGGGATATGATAGAACATTA+CGG | - | chr8.1:25471852-25471871 | MS.gene60203:intron | 30.0% | |
| ATAAATGTCACAGCAATATG+GGG | - | chr8.1:25470185-25470204 | MS.gene60203:CDS | 30.0% | |
| ATGTTCCACTACAAATAGTT+AGG | + | chr8.1:25470364-25470383 | None:intergenic | 30.0% | |
| ATTACTTTCAATGCAATGAC+GGG | + | chr8.1:25471402-25471421 | None:intergenic | 30.0% | |
| ATTGACCATGTCTATTACAA+AGG | + | chr8.1:25471970-25471989 | None:intergenic | 30.0% | |
| ATTGTTACCTATAAGGAGTA+AGG | - | chr8.1:25470797-25470816 | MS.gene60203:intron | 30.0% | |
| CAAAACTGACAATAACCAAT+TGG | - | chr8.1:25470253-25470272 | MS.gene60203:intron | 30.0% | |
| CTAGACCTAATTACTCATAA+GGG | + | chr8.1:25470554-25470573 | None:intergenic | 30.0% | |
| GCTTAGGATGTATTAAATTG+CGG | + | chr8.1:25470993-25471012 | None:intergenic | 30.0% | |
| GGTATGTGATAAGTTTATCA+TGG | - | chr8.1:25472241-25472260 | MS.gene60203:CDS | 30.0% | |
| GTAAACCTTTGTAATAGACA+TGG | - | chr8.1:25471962-25471981 | MS.gene60203:intron | 30.0% | |
| GTTCAAAAGAACAAGTATCA+AGG | - | chr8.1:25470396-25470415 | MS.gene60203:intron | 30.0% | |
| TAGACCTAATTACTCATAAG+GGG | + | chr8.1:25470553-25470572 | None:intergenic | 30.0% | |
| TGGAAGTAATGAACAGAAAA+TGG | - | chr8.1:25472072-25472091 | MS.gene60203:intron | 30.0% | |
| TGTATTGTGAACAGGATAAA+TGG | - | chr8.1:25470156-25470175 | MS.gene60203:CDS | 30.0% | |
| TGTTCCACTACAAATAGTTA+GGG | + | chr8.1:25470363-25470382 | None:intergenic | 30.0% | |
| TTGTTACCTATAAGGAGTAA+GGG | - | chr8.1:25470798-25470817 | MS.gene60203:intron | 30.0% | |
| TTTATATTCAGTTGGATGTG+TGG | - | chr8.1:25471539-25471558 | MS.gene60203:intron | 30.0% | |
| TTTCTTATCACAAGCATACA+AGG | + | chr8.1:25470967-25470986 | None:intergenic | 30.0% | |
| ! | ATTGGTTATTGTCAGTTTTG+GGG | + | chr8.1:25470253-25470272 | None:intergenic | 30.0% |
| ! | CAATTGGTTATTGTCAGTTT+TGG | + | chr8.1:25470255-25470274 | None:intergenic | 30.0% |
| ! | GATACTTGTTCTTTTGAACT+AGG | + | chr8.1:25470395-25470414 | None:intergenic | 30.0% |
| ! | TGAGGTACTACAAAAAATGA+AGG | + | chr8.1:25470724-25470743 | None:intergenic | 30.0% |
| ! | TTATTTTCCCCTCTTTACAA+TGG | - | chr8.1:25471222-25471241 | MS.gene60203:intron | 30.0% |
| !! | ACAAAGGTGCTATAAAATGA+AGG | + | chr8.1:25470686-25470705 | None:intergenic | 30.0% |
| !!! | CTGATTGCATTATGCTTTTT+TGG | + | chr8.1:25471253-25471272 | None:intergenic | 30.0% |
| !!! | TCTACCATCTTTTTTACGAT+AGG | + | chr8.1:25471672-25471691 | None:intergenic | 30.0% |
| AATAGACATGGTCAATGATC+TGG | - | chr8.1:25471974-25471993 | MS.gene60203:intron | 35.0% | |
| ACGTTGAACTACTTTACTCA+AGG | + | chr8.1:25470279-25470298 | None:intergenic | 35.0% | |
| AGAGGCTATTGTCAATATGA+AGG | - | chr8.1:25471081-25471100 | MS.gene60203:intron | 35.0% | |
| AGATCTAGAGATCAATGAGT+TGG | - | chr8.1:25471827-25471846 | MS.gene60203:intron | 35.0% | |
| AGCACCTATCGTAAAAAAGA+TGG | - | chr8.1:25471665-25471684 | MS.gene60203:intron | 35.0% | |
| AGTACAAGTAGATCAGATGA+AGG | - | chr8.1:25471743-25471762 | MS.gene60203:intron | 35.0% | |
| ATTGTGAACAGGATAAATGG+AGG | - | chr8.1:25470159-25470178 | MS.gene60203:CDS | 35.0% | |
| CAAAATTATGCCAAGTTCAG+CGG | - | chr8.1:25472299-25472318 | MS.gene60203:CDS | 35.0% | |
| CCTTTCAAAATCCCAAATTG+AGG | - | chr8.1:25472413-25472432 | MS.gene60203:intron | 35.0% | |
| CTTACAGAAAAACTGCTATG+AGG | + | chr8.1:25470742-25470761 | None:intergenic | 35.0% | |
| GGGAGACAATAATGTATTAG+AGG | - | chr8.1:25471063-25471082 | MS.gene60203:CDS | 35.0% | |
| GTACAAGTAGATCAGATGAA+GGG | - | chr8.1:25471744-25471763 | MS.gene60203:intron | 35.0% | |
| GTATGCTTTGTATTGTGAAC+AGG | - | chr8.1:25470148-25470167 | MS.gene60203:CDS | 35.0% | |
| GTTCCACTACAAATAGTTAG+GGG | + | chr8.1:25470362-25470381 | None:intergenic | 35.0% | |
| TAAGATATGCAGCAAATGCA+TGG | + | chr8.1:25471289-25471308 | None:intergenic | 35.0% | |
| TACACCCCTTATGAGTAATT+AGG | - | chr8.1:25470546-25470565 | MS.gene60203:intron | 35.0% | |
| TACCTCTATGTAAGAAGCAA+TGG | + | chr8.1:25471131-25471150 | None:intergenic | 35.0% | |
| TCAAGATTAAGATGCAGCTT+AGG | + | chr8.1:25471009-25471028 | None:intergenic | 35.0% | |
| TGTAAAGAGGGGAAAATAAC+AGG | + | chr8.1:25471221-25471240 | None:intergenic | 35.0% | |
| TTACTTTCAATGCAATGACG+GGG | + | chr8.1:25471401-25471420 | None:intergenic | 35.0% | |
| ! | AAGCATTGTATTGCTAGTAG+TGG | + | chr8.1:25471367-25471386 | None:intergenic | 35.0% |
| ! | AGAGATCAATGAGTTGGATA+GGG | - | chr8.1:25471833-25471852 | MS.gene60203:intron | 35.0% |
| ! | CATTTTATAGCACCTTTGTG+AGG | - | chr8.1:25470687-25470706 | MS.gene60203:intron | 35.0% |
| ! | TAGAGATCAATGAGTTGGAT+AGG | - | chr8.1:25471832-25471851 | MS.gene60203:intron | 35.0% |
| !! | AAGCTTTATTCCACTAAGTG+GGG | + | chr8.1:25471901-25471920 | None:intergenic | 35.0% |
| !! | ACAAGCTTTATTCCACTAAG+TGG | + | chr8.1:25471903-25471922 | None:intergenic | 35.0% |
| !! | CAAGCTTTATTCCACTAAGT+GGG | + | chr8.1:25471902-25471921 | None:intergenic | 35.0% |
| !! | CCTCAATTTGGGATTTTGAA+AGG | + | chr8.1:25472416-25472435 | None:intergenic | 35.0% |
| !! | TTGGTTATTGTCAGTTTTGG+GGG | + | chr8.1:25470252-25470271 | None:intergenic | 35.0% |
| AAAATGGCGCACAATACTCA+TGG | - | chr8.1:25469975-25469994 | MS.gene60203:CDS | 40.0% | |
| AAACTTGGCTTAGGTGGTTT+GGG | - | chr8.1:25471691-25471710 | MS.gene60203:intron | 40.0% | |
| AAAGCTGGAGTAGTCAAACA+CGG | - | chr8.1:25469946-25469965 | MS.gene60203:CDS | 40.0% | |
| AAGCCCCTAACTATTTGTAG+TGG | - | chr8.1:25470356-25470375 | MS.gene60203:intron | 40.0% | |
| AAGGGTTGTCAAATCACTAG+AGG | - | chr8.1:25471762-25471781 | MS.gene60203:intron | 40.0% | |
| AGACCTTGTTAACTGTGCAA+TGG | - | chr8.1:25470855-25470874 | MS.gene60203:intron | 40.0% | |
| AGATGGTAGAAACTTGGCTT+AGG | - | chr8.1:25471682-25471701 | MS.gene60203:intron | 40.0% | |
| AGTTACCTGTGATTTAGGCT+TGG | - | chr8.1:25471317-25471336 | MS.gene60203:intron | 40.0% | |
| ATGTCTTAATGATGGCAGGT+TGG | - | chr8.1:25471042-25471061 | MS.gene60203:CDS | 40.0% | |
| ATGTTCCACCAGAAATTGTC+AGG | + | chr8.1:25470325-25470344 | None:intergenic | 40.0% | |
| ATTAAGCCCCTGACAATTTC+TGG | - | chr8.1:25470314-25470333 | MS.gene60203:intron | 40.0% | |
| CTACAAATAGTTAGGGGCTT+AGG | + | chr8.1:25470356-25470375 | None:intergenic | 40.0% | |
| CTACTTTACTCAAGGCCAAT+TGG | + | chr8.1:25470271-25470290 | None:intergenic | 40.0% | |
| GAACCATTGCACAGTTAACA+AGG | + | chr8.1:25470861-25470880 | None:intergenic | 40.0% | |
| GCAATGACATATACGTTGAC+AGG | - | chr8.1:25472263-25472282 | MS.gene60203:CDS | 40.0% | |
| GCCATCATTAAGACATGCAA+TGG | + | chr8.1:25471038-25471057 | None:intergenic | 40.0% | |
| GCCATTGCATGTCTTAATGA+TGG | - | chr8.1:25471034-25471053 | MS.gene60203:CDS | 40.0% | |
| GTCAATATGAAGGAGCCAAA+GGG | - | chr8.1:25471091-25471110 | MS.gene60203:intron | 40.0% | |
| TACCTATAAGGAGTAAGGGA+AGG | - | chr8.1:25470802-25470821 | MS.gene60203:intron | 40.0% | |
| TGCCATTGCTTCTTACATAG+AGG | - | chr8.1:25471126-25471145 | MS.gene60203:intron | 40.0% | |
| TGTCAATATGAAGGAGCCAA+AGG | - | chr8.1:25471090-25471109 | MS.gene60203:intron | 40.0% | |
| TGTCTTAATGATGGCAGGTT+GGG | - | chr8.1:25471043-25471062 | MS.gene60203:CDS | 40.0% | |
| TGTTCCACCAGAAATTGTCA+GGG | + | chr8.1:25470324-25470343 | None:intergenic | 40.0% | |
| TTCCTTCCCTTACTCCTTAT+AGG | + | chr8.1:25470807-25470826 | None:intergenic | 40.0% | |
| TTGCATGTCTTAATGATGGC+AGG | - | chr8.1:25471038-25471057 | MS.gene60203:CDS | 40.0% | |
| ! | CTTTTATGTGCAGTCTCACT+TGG | - | chr8.1:25471185-25471204 | MS.gene60203:intron | 40.0% |
| ! | TGATAGCTCTGCCTCAATTT+GGG | + | chr8.1:25472427-25472446 | None:intergenic | 40.0% |
| ! | TTGATAGCTCTGCCTCAATT+TGG | + | chr8.1:25472428-25472447 | None:intergenic | 40.0% |
| AAGCTCTTCTCTGATGCTTG+TGG | - | chr8.1:25472338-25472357 | MS.gene60203:CDS | 45.0% | |
| AAGCTGGAGTAGTCAAACAC+GGG | - | chr8.1:25469947-25469966 | MS.gene60203:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGAATC+GGG | - | chr8.1:25471640-25471659 | MS.gene60203:intron | 45.0% | |
| AGGCAGAGCTATCAAAAGTG+AGG | - | chr8.1:25472433-25472452 | MS.gene60203:intron | 45.0% | |
| ATCTCCATGATTGTGGTGCT+TGG | - | chr8.1:25470473-25470492 | MS.gene60203:intron | 45.0% | |
| ATGCTCCAAGCCTAAATCAC+AGG | + | chr8.1:25471325-25471344 | None:intergenic | 45.0% | |
| ATTCGAACGCGTACGCAAAA+TGG | + | chr8.1:25470016-25470035 | None:intergenic | 45.0% | |
| CAAACCAAGCACCACAATCA+TGG | + | chr8.1:25470480-25470499 | None:intergenic | 45.0% | |
| CAGAGCTATCAAAAGTGAGG+GGG | - | chr8.1:25472436-25472455 | MS.gene60203:intron | 45.0% | |
| CGCAAAATGGAACTGAACTC+AGG | + | chr8.1:25470003-25470022 | None:intergenic | 45.0% | |
| CTTTGCAAAAGCAGCGATGA+AGG | - | chr8.1:25472587-25472606 | MS.gene60203:CDS | 45.0% | |
| GAAACTTGGCTTAGGTGGTT+TGG | - | chr8.1:25471690-25471709 | MS.gene60203:intron | 45.0% | |
| GACAAGTGGCAAAATAGTCC+AGG | - | chr8.1:25471512-25471531 | MS.gene60203:intron | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+CGG | - | chr8.1:25471639-25471658 | MS.gene60203:intron | 45.0% | |
| GCAGAGCTATCAAAAGTGAG+GGG | - | chr8.1:25472435-25472454 | MS.gene60203:intron | 45.0% | |
| GCGTTCGAATGTAGATCTCA+AGG | - | chr8.1:25470026-25470045 | MS.gene60203:CDS | 45.0% | |
| GGCAGAGCTATCAAAAGTGA+GGG | - | chr8.1:25472434-25472453 | MS.gene60203:intron | 45.0% | |
| GTCAGCAAAATTGCAGCAGA+TGG | - | chr8.1:25471488-25471507 | MS.gene60203:intron | 45.0% | |
| GTTCCACCAGAAATTGTCAG+GGG | + | chr8.1:25470323-25470342 | None:intergenic | 45.0% | |
| TCTGCAGTCCATTTCTGCTT+AGG | + | chr8.1:25469910-25469929 | None:intergenic | 45.0% | |
| TGGTAGAAACTTGGCTTAGG+TGG | - | chr8.1:25471685-25471704 | MS.gene60203:intron | 45.0% | |
| ! | ATGGACTGCAGAAGAAGAAG+CGG | - | chr8.1:25469918-25469937 | MS.gene60203:CDS | 45.0% |
| ! | TAGCACCTTTGTGAGGTATC+TGG | - | chr8.1:25470694-25470713 | MS.gene60203:intron | 45.0% |
| ! | TGGGTGTGCCATTGTAAAGA+GGG | + | chr8.1:25471233-25471252 | None:intergenic | 45.0% |
| ! | TTGGGTGTGCCATTGTAAAG+AGG | + | chr8.1:25471234-25471253 | None:intergenic | 45.0% |
| !!! | TTATTGTCAGTTTTGGGGGC+TGG | + | chr8.1:25470248-25470267 | None:intergenic | 45.0% |
| ACTAAGTGGGGTCAGCTACA+TGG | + | chr8.1:25471889-25471908 | None:intergenic | 50.0% | |
| AGCGAGGTCCAAAGATTCTC+CGG | - | chr8.1:25472362-25472381 | MS.gene60203:intron | 50.0% | |
| AGCTGCAAAAGCAGTTGCAG+AGG | - | chr8.1:25472485-25472504 | MS.gene60203:intron | 50.0% | |
| AGCTGGAGTAGTCAAACACG+GGG | - | chr8.1:25469948-25469967 | MS.gene60203:CDS | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | - | chr8.1:25471888-25471907 | MS.gene60203:intron | 50.0% | |
| GAGAGAGAGAGAGAGAATCG+GGG | - | chr8.1:25471641-25471660 | MS.gene60203:intron | 50.0% | |
| GATCGCCAGATACCTCACAA+AGG | + | chr8.1:25470702-25470721 | None:intergenic | 50.0% | |
| GATTGCAGAAGCTGAAGCTG+AGG | - | chr8.1:25472554-25472573 | MS.gene60203:CDS | 50.0% | |
| TCAAACACGGGGCTGGAAAA+TGG | - | chr8.1:25469959-25469978 | MS.gene60203:CDS | 50.0% | |
| TCACACATCTTCTCCACCTC+CGG | + | chr8.1:25472384-25472403 | None:intergenic | 50.0% | |
| TCACAGCAATATGGGGATCC+CGG | - | chr8.1:25470192-25470211 | MS.gene60203:CDS | 50.0% | |
| TGGGTGCTCCTAAGCAGAAA+TGG | - | chr8.1:25469899-25469918 | MS.gene60203:CDS | 50.0% | |
| TTCTCAGAGACCGCTGAACT+TGG | + | chr8.1:25472312-25472331 | None:intergenic | 50.0% | |
| TTGCAGCAGATGGTGACAAG+TGG | - | chr8.1:25471498-25471517 | MS.gene60203:intron | 50.0% | |
| ! | AAGCCCCTGACAATTTCTGG+TGG | - | chr8.1:25470317-25470336 | MS.gene60203:intron | 50.0% |
| ! | GGCAAGTTTTGCTTTCTGCC+GGG | + | chr8.1:25470213-25470232 | None:intergenic | 50.0% |
| ! | GGGCAAGTTTTGCTTTCTGC+CGG | + | chr8.1:25470214-25470233 | None:intergenic | 50.0% |
| ! | GGGTGTGCCATTGTAAAGAG+GGG | + | chr8.1:25471232-25471251 | None:intergenic | 50.0% |
| ! | TCAGCGGTCTCTGAGAAAAG+AGG | - | chr8.1:25472315-25472334 | MS.gene60203:CDS | 50.0% |
| CTCCACCTCCGGAGAATCTT+TGG | + | chr8.1:25472373-25472392 | None:intergenic | 55.0% | |
| CTCTGATGCTTGTGGAAGCG+AGG | - | chr8.1:25472346-25472365 | MS.gene60203:CDS | 55.0% | |
| GAGGTCCAAAGATTCTCCGG+AGG | - | chr8.1:25472365-25472384 | MS.gene60203:intron | 55.0% | |
| GGCAGAAGTTGCCATTGCAC+AGG | - | chr8.1:25472506-25472525 | MS.gene60203:CDS | 55.0% | |
| GTCCAAAGATTCTCCGGAGG+TGG | - | chr8.1:25472368-25472387 | MS.gene60203:intron | 55.0% | |
| ! | GAAGAAGCGGCGTTGAAAGC+TGG | - | chr8.1:25469931-25469950 | MS.gene60203:CDS | 55.0% |
| ! | GCAGCCTTGTCAGAACCCTT+TGG | + | chr8.1:25471109-25471128 | None:intergenic | 55.0% |
| ! | GGAGCCAAAGGGTTCTGACA+AGG | - | chr8.1:25471102-25471121 | MS.gene60203:intron | 55.0% |
| !!! | TGTCAGTTTTGGGGGCTGGA+AGG | + | chr8.1:25470244-25470263 | None:intergenic | 55.0% |
| ACAGGCCGAAGCAGCAGCTA+GGG | - | chr8.1:25472524-25472543 | MS.gene60203:CDS | 60.0% | |
| GAGGGGGATGTCAGCTCAAG+AGG | - | chr8.1:25472452-25472471 | MS.gene60203:intron | 60.0% | |
| GGAGTAGTCAAACACGGGGC+TGG | - | chr8.1:25469952-25469971 | MS.gene60203:CDS | 60.0% | |
| GGGGATGTCAGCTCAAGAGG+CGG | - | chr8.1:25472455-25472474 | MS.gene60203:intron | 60.0% | |
| GGGGGCTGGAAGGCTCTTAA+GGG | + | chr8.1:25470234-25470253 | None:intergenic | 60.0% | |
| TGGGGGCTGGAAGGCTCTTA+AGG | + | chr8.1:25470235-25470254 | None:intergenic | 60.0% | |
| ! | TGCTGCTTCGGCCTGTGCAA+TGG | + | chr8.1:25472520-25472539 | None:intergenic | 60.0% |
| CACAGGCCGAAGCAGCAGCT+AGG | - | chr8.1:25472523-25472542 | MS.gene60203:CDS | 65.0% | |
| CGAAGCAGCAGCTAGGGAGG+CGG | - | chr8.1:25472530-25472549 | MS.gene60203:CDS | 65.0% | |
| ! | CGCCTCCCTAGCTGCTGCTT+CGG | + | chr8.1:25472532-25472551 | None:intergenic | 65.0% |
| GGCCGAAGCAGCAGCTAGGG+AGG | - | chr8.1:25472527-25472546 | MS.gene60203:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 25469898 | 25472641 | 25469898 | ID=MS.gene60203 |
| chr8.1 | mRNA | 25469898 | 25472641 | 25469898 | ID=MS.gene60203.t1;Parent=MS.gene60203 |
| chr8.1 | exon | 25472492 | 25472641 | 25472492 | ID=MS.gene60203.t1.exon1;Parent=MS.gene60203.t1 |
| chr8.1 | CDS | 25472492 | 25472641 | 25472492 | ID=cds.MS.gene60203.t1;Parent=MS.gene60203.t1 |
| chr8.1 | exon | 25472122 | 25472369 | 25472122 | ID=MS.gene60203.t1.exon2;Parent=MS.gene60203.t1 |
| chr8.1 | CDS | 25472122 | 25472369 | 25472122 | ID=cds.MS.gene60203.t1;Parent=MS.gene60203.t1 |
| chr8.1 | exon | 25471392 | 25471479 | 25471392 | ID=MS.gene60203.t1.exon3;Parent=MS.gene60203.t1 |
| chr8.1 | CDS | 25471392 | 25471479 | 25471392 | ID=cds.MS.gene60203.t1;Parent=MS.gene60203.t1 |
| chr8.1 | exon | 25471006 | 25471089 | 25471006 | ID=MS.gene60203.t1.exon4;Parent=MS.gene60203.t1 |
| chr8.1 | CDS | 25471006 | 25471089 | 25471006 | ID=cds.MS.gene60203.t1;Parent=MS.gene60203.t1 |
| chr8.1 | exon | 25469898 | 25470254 | 25469898 | ID=MS.gene60203.t1.exon5;Parent=MS.gene60203.t1 |
| chr8.1 | CDS | 25469898 | 25470254 | 25469898 | ID=cds.MS.gene60203.t1;Parent=MS.gene60203.t1 |
| Gene Sequence |
| Protein sequence |
