AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60290.t1 MTR_1g012610 95.527 626 26 2 1 624 15 640 0.0 1234
MS.gene60290.t1 MTR_1g012610 95.527 626 26 2 1 624 6 631 0.0 1232
MS.gene60290.t1 MTR_1g012610 95.527 626 26 2 1 624 16 641 0.0 1231
MS.gene60290.t1 MTR_3g014090 31.229 301 175 6 38 311 141 436 4.87e-36 145
MS.gene60290.t1 MTR_0137s0080 30.183 328 194 7 14 311 114 436 4.88e-36 144
MS.gene60290.t1 MTR_3g014090 31.229 301 175 6 38 311 139 434 5.50e-36 145
MS.gene60290.t1 MTR_5g023150 26.689 296 193 10 21 311 178 454 3.29e-22 100
MS.gene60290.t1 MTR_5g023150 26.689 296 193 10 21 311 275 551 5.56e-22 100
MS.gene60290.t1 MTR_4g088755 29.293 198 132 3 119 315 116 306 7.38e-20 92.0
MS.gene60290.t1 MTR_4g088745 29.293 198 132 3 119 315 121 311 8.60e-20 91.7
MS.gene60290.t1 MTR_5g066490 25.497 302 203 8 19 313 623 909 1.97e-18 90.1
MS.gene60290.t1 MTR_4g088750 28.283 198 134 3 119 315 277 467 3.80e-18 88.2
MS.gene60290.t1 MTR_2g013900 29.293 198 132 3 119 315 238 428 1.29e-17 86.3
MS.gene60290.t1 MTR_1g113960 24.917 301 200 11 25 319 285 565 6.71e-17 84.7
MS.gene60290.t1 MTR_3g100090 25.733 307 203 9 19 315 630 921 1.19e-16 84.3
MS.gene60290.t1 MTR_1g113960 25.676 296 190 12 25 314 285 556 5.80e-16 81.6
MS.gene60290.t1 MTR_3g078110 22.785 316 205 8 15 305 34 335 1.02e-15 79.7
MS.gene60290.t1 MTR_3g101210 26.642 274 179 8 46 310 313 573 1.18e-15 80.9
MS.gene60290.t1 MTR_3g101210 26.642 274 179 8 46 310 313 573 1.24e-15 80.9
MS.gene60290.t1 MTR_2g020380 35.766 137 83 4 130 263 81 215 5.69e-14 76.3
MS.gene60290.t1 MTR_4g049730 28.313 166 106 5 139 302 91 245 6.25e-14 74.3
MS.gene60290.t1 MTR_5g006560 26.087 184 129 3 119 301 181 358 6.39e-14 74.3
MS.gene60290.t1 MTR_1g103270 23.810 189 137 3 119 306 173 355 7.33e-14 73.9
MS.gene60290.t1 MTR_8g107000 25.180 278 183 9 33 305 725 982 7.37e-14 75.5
MS.gene60290.t1 MTR_5g006560 26.087 184 129 3 119 301 215 392 1.28e-13 73.6
MS.gene60290.t1 MTR_6g079540 31.056 161 103 4 147 305 511 665 2.78e-13 73.6
MS.gene60290.t1 MTR_6g079540 31.056 161 103 4 147 305 759 913 3.01e-13 73.6
MS.gene60290.t1 MTR_4g082325 24.837 306 203 11 21 314 121 411 3.98e-13 72.0
MS.gene60290.t1 MTR_4g132860 25.253 198 139 4 119 315 155 344 4.24e-13 71.6
MS.gene60290.t1 MTR_5g010730 28.977 176 109 5 147 312 522 691 7.27e-13 72.0
MS.gene60290.t1 MTR_7g092360 23.308 266 190 6 38 302 14 266 8.45e-13 72.0
MS.gene60290.t1 MTR_5g010730 28.977 176 109 5 147 312 577 746 9.81e-13 71.6
MS.gene60290.t1 MTR_3g114900 22.909 275 177 5 40 304 270 519 1.17e-12 71.2
MS.gene60290.t1 MTR_1g061190 28.322 286 176 11 31 308 549 813 1.67e-12 71.2
MS.gene60290.t1 MTR_1g081790 24.841 314 197 10 10 305 650 942 3.28e-12 70.1
MS.gene60290.t1 MTR_2g023890 27.941 272 147 13 46 301 11 249 3.24e-11 65.5
MS.gene60290.t1 MTR_2g040510 26.000 200 129 7 115 302 138 330 3.51e-11 65.5
MS.gene60290.t1 MTR_5g059880 27.381 168 108 5 135 301 286 440 4.89e-11 65.9
MS.gene60290.t1 MTR_1g026160 22.222 297 194 7 27 312 132 402 7.52e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60290.t1 AT4G32250 63.130 575 200 6 10 580 14 580 0.0 739
MS.gene60290.t1 AT4G32250 63.130 575 200 6 10 580 14 580 0.0 739
MS.gene60290.t1 AT4G32250 63.130 575 200 6 10 580 14 580 0.0 739
MS.gene60290.t1 AT5G13530 31.894 301 172 9 40 311 137 433 2.95e-36 146
MS.gene60290.t1 AT5G13530 31.894 301 172 9 40 311 137 433 2.98e-36 146
MS.gene60290.t1 AT4G24480 26.866 335 204 10 8 316 624 943 3.40e-19 92.8
MS.gene60290.t1 AT4G24480 26.888 331 204 10 8 316 624 938 2.17e-18 90.1
MS.gene60290.t1 AT4G24480 26.888 331 204 10 8 316 624 938 2.40e-18 90.1
MS.gene60290.t1 AT4G35780 23.779 307 208 11 15 314 264 551 6.85e-18 87.8
MS.gene60290.t1 AT4G38470 24.839 310 209 10 8 312 257 547 1.06e-17 87.0
MS.gene60290.t1 AT4G38470 25.484 310 203 11 8 312 257 543 2.10e-17 86.3
MS.gene60290.t1 AT2G17700 24.242 297 201 11 20 311 265 542 2.35e-17 86.3
MS.gene60290.t1 AT1G05100 32.044 181 106 7 127 301 89 258 2.82e-16 80.9
MS.gene60290.t1 AT3G63260 25.521 192 135 3 116 305 178 363 1.05e-15 80.1
MS.gene60290.t1 AT3G01490 22.772 303 212 6 19 305 87 383 2.11e-15 79.3
MS.gene60290.t1 AT4G26890 28.108 185 119 4 120 302 77 249 1.27e-14 77.0
MS.gene60290.t1 AT5G01850 27.363 201 131 5 118 311 90 282 1.72e-14 75.5
MS.gene60290.t1 AT5G01850 27.363 201 131 5 118 311 114 306 2.11e-14 75.5
MS.gene60290.t1 AT3G46930 26.131 199 138 4 119 315 240 431 3.17e-14 75.9
MS.gene60290.t1 AT3G46930 26.131 199 138 4 119 315 275 466 3.68e-14 75.9
MS.gene60290.t1 AT4G38470 25.856 263 171 10 8 265 257 500 4.74e-14 75.5
MS.gene60290.t1 AT1G08720 26.761 284 182 9 33 311 665 927 1.03e-13 75.1
MS.gene60290.t1 AT1G62400 25.253 198 139 4 119 315 161 350 1.51e-13 73.2
MS.gene60290.t1 AT5G11850 24.818 274 184 7 38 306 607 863 2.71e-13 73.9
MS.gene60290.t1 AT1G73660 24.088 274 186 7 38 306 746 1002 5.03e-13 73.2
MS.gene60290.t1 AT1G32320 26.493 268 163 11 46 302 54 298 6.28e-13 70.5
MS.gene60290.t1 AT5G58950 25.126 199 141 3 119 316 284 475 7.04e-13 72.0
MS.gene60290.t1 AT2G42640 28.571 182 118 6 124 305 567 736 1.87e-12 70.9
MS.gene60290.t1 AT3G45790 28.571 231 143 6 30 250 92 310 2.03e-12 69.7
MS.gene60290.t1 AT2G42640 28.571 182 118 6 124 305 605 774 2.52e-12 70.5
MS.gene60290.t1 AT1G18160 24.088 274 186 7 38 306 713 969 2.77e-12 70.5
MS.gene60290.t1 AT5G03730 26.071 280 180 11 33 305 547 806 7.67e-12 68.9
MS.gene60290.t1 AT5G03730 26.071 280 180 11 33 305 547 806 7.67e-12 68.9
MS.gene60290.t1 AT3G46140 27.897 233 146 6 28 250 90 310 8.06e-12 67.8
MS.gene60290.t1 AT4G23050 29.299 157 103 4 147 301 567 717 1.00e-11 68.6
MS.gene60290.t1 AT4G23050 29.299 157 103 4 147 301 566 716 1.02e-11 68.6
MS.gene60290.t1 AT4G29810 27.363 201 125 8 115 304 147 337 1.34e-11 66.6
MS.gene60290.t1 AT4G29810 27.136 199 124 8 115 302 138 326 3.99e-11 65.5
MS.gene60290.t1 AT4G29810 27.136 199 124 8 115 302 147 335 4.42e-11 65.5

Find 176 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGAGTTGGGAGGCTTTC+TGG 0.085084 1.1:+8524866 None:intergenic
TGACAACGATCAAGCGATTT+TGG 0.146585 1.1:-8526081 MS.gene60290:CDS
GATTCGAATGGCGTCGTAAA+AGG 0.159414 1.1:-8524485 MS.gene60290:CDS
GAAGAACATTACATGGTTTA+AGG 0.171246 1.1:+8526108 None:intergenic
AGAGCTTCTGTTGGATTTAT+TGG 0.180068 1.1:-8524609 MS.gene60290:CDS
ACCTCTGGTTTCCATTGTTC+TGG 0.192206 1.1:+8525969 None:intergenic
CATGGAATTTCAATGTTAAA+TGG 0.209362 1.1:-8526481 MS.gene60290:CDS
GTTAAGCACCATCTTTAAAA+AGG 0.241242 1.1:+8524070 None:intergenic
TGTTCTGGAGCCATGTAATT+AGG 0.250797 1.1:+8525984 None:intergenic
GAGCTTCTGTTGGATTTATT+GGG 0.274049 1.1:-8524608 MS.gene60290:CDS
TGCTGAAGTTTCAAAGGTTC+AGG 0.298858 1.1:+8526697 None:intergenic
TTAGAACGTACTGCAGATTA+TGG 0.302417 1.1:-8524801 MS.gene60290:CDS
GGGCTTAACACATTCTCTTT+TGG 0.303938 1.1:+8524510 None:intergenic
TTTCCAGGGATGGTGAGTTT+TGG 0.309534 1.1:-8524399 MS.gene60290:CDS
ATATTCTGCGCGTCTTTAAA+AGG 0.310548 1.1:-8525719 MS.gene60290:intron
GTCGATGTATGAATTCTTAT+AGG 0.311891 1.1:+8524744 None:intergenic
TGTTTGGTTGTCAAGTTTCC+AGG 0.313479 1.1:-8524414 MS.gene60290:CDS
TAGTCAGTGCTGCCTGATTT+TGG 0.315215 1.1:+8524942 None:intergenic
TTCACATGATCCTCTTTGAT+TGG 0.322968 1.1:+8526571 None:intergenic
TCTGCGTGGGCCAGTTTGTT+AGG 0.324940 1.1:-8524533 MS.gene60290:CDS
CTGCTACTGGTAGGATTTCA+TGG 0.337558 1.1:-8524452 MS.gene60290:CDS
GAGGACCCTTTGGTGATGTT+TGG 0.361104 1.1:-8526663 MS.gene60290:CDS
CCATGGGTTATAATCCTTGT+AGG 0.362031 1.1:+8524129 None:intergenic
AAGGAGTTTCTAGTGTTTGC+TGG 0.368878 1.1:-8526507 MS.gene60290:CDS
ACATCTTAGCAGCAACTTCA+TGG 0.384443 1.1:+8526599 None:intergenic
TTGAAACTTCAGCACCGAAT+TGG 0.395091 1.1:-8526688 MS.gene60290:CDS
GAAACGGATTCATGGGGATT+CGG 0.395952 1.1:-8525927 MS.gene60290:CDS
ATTCGAATGGCGTCGTAAAA+GGG 0.398237 1.1:-8524484 MS.gene60290:CDS
CCTCTCAAAGGATCAACTTC+AGG 0.398972 1.1:-8524907 MS.gene60290:CDS
TTGAAACTAGGCATATTAGT+TGG 0.401044 1.1:-8524228 MS.gene60290:CDS
TCGATGTATGAATTCTTATA+GGG 0.403661 1.1:+8524745 None:intergenic
CGAATTGGTCGAGGACCCTT+TGG 0.406343 1.1:-8526673 MS.gene60290:CDS
TCTACCGTCATTGCGATTGA+TGG 0.408374 1.1:+8524629 None:intergenic
ATATTTACAGCTTTGAAACT+AGG 0.412019 1.1:-8524240 MS.gene60290:CDS
TGAAGAGCCAAGCAAAAGAT+TGG 0.413672 1.1:+8526043 None:intergenic
ATGAAAGTAATTCCAAAATC+AGG 0.416519 1.1:-8524954 MS.gene60290:CDS
ATGGCCTGGCAGCTGGTGAT+TGG 0.421439 1.1:-8524704 MS.gene60290:CDS
TTATTGGGCTGCAAACTCTC+TGG 0.426673 1.1:-8524593 MS.gene60290:CDS
AGGGGAGGGGCCTCTGCTAC+TGG 0.429138 1.1:-8524465 MS.gene60290:CDS
TTGACAACCAAACACCCATT+TGG 0.430784 1.1:+8524423 None:intergenic
ATGCCTAGTACAACTAGAAC+AGG 0.431258 1.1:+8524261 None:intergenic
AATCCATGGACTTGCGCGAT+TGG 0.432685 1.1:+8526723 None:intergenic
TGTCATTTGAAACGGATTCA+TGG 0.434134 1.1:-8525935 MS.gene60290:CDS
GGAGGAGGATGGAGATATCA+AGG 0.438936 1.1:-8524981 MS.gene60290:CDS
TGTCCTGTTGGTGAAATATA+CGG 0.443667 1.1:-8525858 MS.gene60290:CDS
GATACTACCAAATGGGTGTT+TGG 0.448805 1.1:-8524430 MS.gene60290:CDS
TTCCCAAAACTCACCATCCC+TGG 0.449001 1.1:+8524396 None:intergenic
GTCATTTGAAACGGATTCAT+GGG 0.449610 1.1:-8525934 MS.gene60290:CDS
TTTGAGGAATCGACCTTCAA+TGG 0.455368 1.1:-8525745 MS.gene60290:CDS
GTCACGAATGGCCTGGCAGC+TGG 0.457715 1.1:-8524711 MS.gene60290:CDS
TCTAGTGTTTGCTGGTTACA+TGG 0.459137 1.1:-8526499 MS.gene60290:CDS
TCTCCCATTGAGAATATCCT+TGG 0.462519 1.1:-8525786 MS.gene60290:CDS
CAAAGGGTCCTCGACCAATT+CGG 0.467685 1.1:+8526674 None:intergenic
ATTTCATGGATACTACCAAA+TGG 0.474128 1.1:-8524438 MS.gene60290:CDS
GACATAGGGCCTCTGACCTC+TGG 0.481700 1.1:+8525954 None:intergenic
GGTTGTCAAGTTTCCAGGGA+TGG 0.483297 1.1:-8524409 MS.gene60290:CDS
AAAGGTTCAGGTTCAATCCA+TGG 0.486677 1.1:+8526709 None:intergenic
AGTTGGGAGGCTTTCTGGAT+CGG 0.491406 1.1:+8524871 None:intergenic
AAGCCAACGACAGTTCCGTC+TGG 0.492923 1.1:+8524822 None:intergenic
AGGCCCTATGTCATTTGAAA+CGG 0.494592 1.1:-8525943 MS.gene60290:CDS
GAAGAGCCAAGCAAAAGATT+GGG 0.495194 1.1:+8526044 None:intergenic
AAACCCTTCAGAACTCGAAA+TGG 0.495513 1.1:-8524565 MS.gene60290:CDS
AAATTGTATGACGGTTCAAT+TGG 0.497991 1.1:-8526344 MS.gene60290:CDS
CTGAATGAACTGGCTAATGA+TGG 0.498348 1.1:-8525002 MS.gene60290:CDS
GGTACGCTTGAAAGATGAAA+AGG 0.498765 1.1:-8524682 MS.gene60290:CDS
AGACCTGTTCTAGTTGTACT+AGG 0.500576 1.1:-8524264 MS.gene60290:CDS
TAACCCATGGCAACACAACA+TGG 0.500752 1.1:-8524116 MS.gene60290:CDS
CGACCAATCGCGCAAGTCCA+TGG 0.502376 1.1:-8526726 MS.gene60290:CDS
GATCCGTATATTTCACCAAC+AGG 0.502608 1.1:+8525855 None:intergenic
GAGGGGCCTCTGCTACTGGT+AGG 0.503223 1.1:-8524461 MS.gene60290:CDS
TGGCCTGGCAGCTGGTGATT+GGG 0.503490 1.1:-8524703 MS.gene60290:CDS
ATGGGAGAAGGAAGGCCACT+TGG 0.504464 1.1:+8525801 None:intergenic
AACTTCAACCTCGGAAGGAT+CGG 0.506263 1.1:+8524356 None:intergenic
TGCACCAAGGATATTCTCAA+TGG 0.506987 1.1:+8525782 None:intergenic
CGCAGAATATCTACCATTGA+AGG 0.507993 1.1:+8525732 None:intergenic
GAATTTCAATGTTAAATGGA+AGG 0.512178 1.1:-8526477 MS.gene60290:CDS
TGGCAGGTACGGGATCGATC+TGG 0.512572 1.1:-8526177 MS.gene60290:intron
CTCAAAGGATCAACTTCAGG+TGG 0.513886 1.1:-8524904 MS.gene60290:CDS
TTATGGATTTGTTCTAGTGA+GGG 0.514209 1.1:-8524784 MS.gene60290:CDS
TCAGATATTGCTCAGAGGCT+TGG 0.514336 1.1:-8526011 MS.gene60290:CDS
GTTTGGTTGTCAAGTTTCCA+GGG 0.514420 1.1:-8524413 MS.gene60290:CDS
ACACATCACCTCAAAACATC+AGG 0.516904 1.1:+8526281 None:intergenic
CATGGACTTGCGCGATTGGT+CGG 0.519277 1.1:+8526727 None:intergenic
ATGGTTTAAGGTTGAGAACA+AGG 0.524109 1.1:+8526120 None:intergenic
AATTTCAATGTTAAATGGAA+GGG 0.525630 1.1:-8526476 MS.gene60290:intron
TTGCAGGTCACTGAATGAAC+TGG 0.528545 1.1:-8525012 MS.gene60290:intron
TCTGCCATTTCGAGTTCTGA+AGG 0.531466 1.1:+8524561 None:intergenic
GTACCCAATCACCAGCTGCC+AGG 0.532200 1.1:+8524700 None:intergenic
TTTCATGGATACTACCAAAT+GGG 0.532985 1.1:-8524437 MS.gene60290:CDS
AGCAAACACTAGAAACTCCT+TGG 0.533146 1.1:+8526509 None:intergenic
TGAACGCGTCACGAATGGCC+TGG 0.537908 1.1:-8524718 MS.gene60290:CDS
CACCGAGTGGTTCCTCTCAA+AGG 0.541938 1.1:-8524919 MS.gene60290:CDS
CCTTGGTATGGATGTCCTGT+TGG 0.543914 1.1:-8525870 MS.gene60290:CDS
ATTATGGATTTGTTCTAGTG+AGG 0.545782 1.1:-8524785 MS.gene60290:CDS
ATTCGGTGCTGAAGTTTCAA+AGG 0.549441 1.1:+8526691 None:intergenic
TACGACGCCATTCGAATCGA+GGG 0.550381 1.1:+8524490 None:intergenic
GAATCCGTTTCAAATGACAT+AGG 0.550959 1.1:+8525939 None:intergenic
TCATTGAGAAGAACATTACA+TGG 0.551201 1.1:+8526101 None:intergenic
GCACCAAGGATATTCTCAAT+GGG 0.552742 1.1:+8525783 None:intergenic
TTCGAATGGCGTCGTAAAAG+GGG 0.556323 1.1:-8524483 MS.gene60290:CDS
TAGTTGGAAACAAAGTGAAA+AGG 0.558036 1.1:-8524212 MS.gene60290:CDS
AACATGTTGAGGATCATCAC+TGG 0.559885 1.1:-8524293 MS.gene60290:CDS
AAAATCAACAACTTCAACCT+CGG 0.561609 1.1:+8524347 None:intergenic
ACTGGTAGTCAACCTTGGTA+TGG 0.562801 1.1:-8525882 MS.gene60290:CDS
AAAAGGATATTAGCAACTGA+AGG 0.563136 1.1:+8524087 None:intergenic
TGAGATTTGCATGAGTTGGG+AGG 0.563242 1.1:+8524858 None:intergenic
AACCCATGGCAACACAACAT+GGG 0.563805 1.1:-8524115 MS.gene60290:CDS
CTGCCATTTCGAGTTCTGAA+GGG 0.564065 1.1:+8524562 None:intergenic
AGCCAACGACAGTTCCGTCT+GGG 0.566135 1.1:+8524823 None:intergenic
GGGCTGCAAACTCTCTGGAA+TGG 0.566139 1.1:-8524588 MS.gene60290:CDS
ACTCTTGAACGCGTCACGAA+TGG 0.567776 1.1:-8524723 MS.gene60290:CDS
GTCAAAACAACAGTCCTACA+AGG 0.572453 1.1:-8524143 MS.gene60290:CDS
TGGCTAATGATGGAGGAGGA+TGG 0.574319 1.1:-8524992 MS.gene60290:CDS
ACCCATGGCAACACAACATG+GGG 0.575393 1.1:-8524114 MS.gene60290:CDS
ATTACATGGCTCCAGAACAA+TGG 0.575533 1.1:-8525980 MS.gene60290:CDS
TCAACTTCAGGTGGGTGACA+TGG 0.577067 1.1:-8524895 MS.gene60290:CDS
AGAAAAGTATCAACATGTTG+AGG 0.578832 1.1:-8524304 MS.gene60290:CDS
TGCAAGCCAAACATCACCAA+AGG 0.581260 1.1:+8526657 None:intergenic
AGGATATTCTCAATGGGAGA+AGG 0.581766 1.1:+8525789 None:intergenic
TTTGTTCTAGTGAGGGTCCA+CGG 0.582005 1.1:-8524777 MS.gene60290:CDS
TGGGAATGAATCAAACACCT+TGG 0.582420 1.1:-8524379 MS.gene60290:CDS
TCAACAACTTCAACCTCGGA+AGG 0.582617 1.1:+8524351 None:intergenic
CATTCCATCAATCGCAATGA+CGG 0.585990 1.1:-8524633 MS.gene60290:CDS
TGGGAGAAGGAAGGCCACTT+GGG 0.586231 1.1:+8525802 None:intergenic
CGGTTCAATTGGTGACAAGT+TGG 0.586939 1.1:-8526333 MS.gene60290:CDS
AATCCGTTTCAAATGACATA+GGG 0.587008 1.1:+8525940 None:intergenic
AAGGAAAAGCACTCACCGGT+GGG 0.588053 1.1:-8524663 MS.gene60290:CDS
TACGGGATCGATCTGGCTCA+AGG 0.590380 1.1:-8526170 MS.gene60290:CDS
ACAAAGTGAAAAGGTGCAAG+AGG 0.591652 1.1:-8524203 MS.gene60290:CDS
CACCTTGGCCGATCCTTCCG+AGG 0.592446 1.1:-8524364 MS.gene60290:CDS
AACCTCGGAAGGATCGGCCA+AGG 0.594129 1.1:+8524362 None:intergenic
TGGCTAGACTAAGAGATGGA+TGG 0.594983 1.1:-8526313 MS.gene60290:CDS
GATGTTACATCCAATCAAAG+AGG 0.595757 1.1:-8526581 MS.gene60290:CDS
TTACGACGCCATTCGAATCG+AGG 0.595769 1.1:+8524489 None:intergenic
GCAAGCCAAACATCACCAAA+GGG 0.597883 1.1:+8526658 None:intergenic
GAATTATGCTTGAAGTGCCA+AGG 0.602260 1.1:-8526526 MS.gene60290:CDS
CTTCAGCACCGAATTGGTCG+AGG 0.602330 1.1:-8526682 MS.gene60290:CDS
GCTTGGAAGTCCTAATTACA+TGG 0.604254 1.1:-8525994 MS.gene60290:CDS
ATCATTATGAAATTGTATGA+CGG 0.604681 1.1:-8526353 MS.gene60290:CDS
TGTTGACTGGTAGTCAACCT+TGG 0.606529 1.1:-8525887 MS.gene60290:CDS
ACCGTTGTTGAAATGTTGAC+TGG 0.606786 1.1:-8525900 MS.gene60290:CDS
CCTGAAGTTGATCCTTTGAG+AGG 0.610469 1.1:+8524907 None:intergenic
AATGGCGTCGTAAAAGGGGA+GGG 0.612881 1.1:-8524479 MS.gene60290:CDS
GTCCCAGACGGAACTGTCGT+TGG 0.613432 1.1:-8524825 MS.gene60290:CDS
TGTTAAGCCCTCGATTCGAA+TGG 0.618387 1.1:-8524497 MS.gene60290:CDS
TCATTTGAAACGGATTCATG+GGG 0.622874 1.1:-8525933 MS.gene60290:CDS
TGAAAAGGAAAAGCACTCAC+CGG 0.625000 1.1:-8524667 MS.gene60290:CDS
ATGGCAGAATCATTCTGCGT+GGG 0.627438 1.1:-8524546 MS.gene60290:CDS
AAGTTGGCTAGACTAAGAGA+TGG 0.628842 1.1:-8526317 MS.gene60290:CDS
TGAAATCCTACCAGTAGCAG+AGG 0.629390 1.1:+8524455 None:intergenic
AAAGGAAAAGCACTCACCGG+TGG 0.630780 1.1:-8524664 MS.gene60290:CDS
ATCCTTTGAGAGGAACCACT+CGG 0.632608 1.1:+8524917 None:intergenic
ATGGCGTCGTAAAAGGGGAG+GGG 0.637421 1.1:-8524478 MS.gene60290:CDS
GAATGGCGTCGTAAAAGGGG+AGG 0.641779 1.1:-8524480 MS.gene60290:CDS
TATTCTCAATGGGAGAAGGA+AGG 0.642358 1.1:+8525793 None:intergenic
AATGACGGTAGAGCTTCTGT+TGG 0.643785 1.1:-8524618 MS.gene60290:CDS
CAATGGAAACCAGAGGTCAG+AGG 0.644185 1.1:-8525963 MS.gene60290:CDS
ACATGTTGAGGATCATCACT+GGG 0.644328 1.1:-8524292 MS.gene60290:CDS
TCAAAGGATCAACTTCAGGT+GGG 0.652726 1.1:-8524903 MS.gene60290:CDS
ATGGAATGTAGAATCCCCAC+CGG 0.657028 1.1:+8524648 None:intergenic
GAAAAGCTGCATATCCCAAG+TGG 0.662621 1.1:-8525816 MS.gene60290:CDS
ACCAGTCAACATTTCAACAA+CGG 0.664981 1.1:+8525899 None:intergenic
CCTACAAGGATTATAACCCA+TGG 0.667895 1.1:-8524129 MS.gene60290:CDS
AATGGCAGAATCATTCTGCG+TGG 0.675086 1.1:-8524547 MS.gene60290:CDS
AATGAACTGGCTAATGATGG+AGG 0.681313 1.1:-8524999 MS.gene60290:CDS
CAAAACATGAATGTCCCAGA+CGG 0.682309 1.1:-8524837 MS.gene60290:CDS
CCATGGCAACACAACATGGG+GGG 0.686405 1.1:-8524112 MS.gene60290:CDS
TTAGCTCAGATATTGCTCAG+AGG 0.694542 1.1:-8526016 MS.gene60290:CDS
AGGAAAAGCACTCACCGGTG+GGG 0.698636 1.1:-8524662 MS.gene60290:CDS
GAACTGGCTAATGATGGAGG+AGG 0.699870 1.1:-8524996 MS.gene60290:CDS
TCCAGAACAATGGAAACCAG+AGG 0.702393 1.1:-8525970 MS.gene60290:CDS
CATACTCAAAACATGCACCA+AGG 0.704149 1.1:+8525769 None:intergenic
CCCATGGCAACACAACATGG+GGG 0.707761 1.1:-8524113 MS.gene60290:CDS
TTATAGGGTCATGAATACCG+TGG 0.720576 1.1:+8524760 None:intergenic
CCAACAGGACATCCATACCA+AGG 0.725485 1.1:+8525870 None:intergenic
GCAGCACTGACTACACCGAG+TGG 0.764598 1.1:-8524932 MS.gene60290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAGATATTAACTAAA+AGG + chr1.1:8525781-8525800 None:intergenic 10.0%
!! ACATGTTAAGAATTTAAAAA+TGG - chr1.1:8525624-8525643 MS.gene60290:intron 15.0%
!! AATTTCAATGTTAAATGGAA+GGG - chr1.1:8524400-8524419 MS.gene60290:CDS 20.0%
!! ATCATTATGAAATTGTATGA+CGG - chr1.1:8524523-8524542 MS.gene60290:CDS 20.0%
!! ATGCTAAATTAAACAAGAAT+CGG + chr1.1:8525229-8525248 None:intergenic 20.0%
!!! ATCTTTAACTTATATAGCAT+AGG - chr1.1:8524636-8524655 MS.gene60290:CDS 20.0%
!!! CAAAGATAGAAATATTTTGT+TGG + chr1.1:8525718-8525737 None:intergenic 20.0%
!!! CAACAAAATATTTCTATCTT+TGG - chr1.1:8525716-8525735 MS.gene60290:intron 20.0%
!!! TCTTTAACTTATATAGCATA+GGG - chr1.1:8524637-8524656 MS.gene60290:CDS 20.0%
!!! TTCTTTTGATTATGAGATTT+TGG - chr1.1:8524091-8524110 MS.gene60290:CDS 20.0%
! AAAATTACTGGTCAATACTA+AGG - chr1.1:8524660-8524679 MS.gene60290:CDS 25.0%
! ATGAAAGTAATTCCAAAATC+AGG - chr1.1:8525922-8525941 MS.gene60290:CDS 25.0%
! CATGGAATTTCAATGTTAAA+TGG - chr1.1:8524395-8524414 MS.gene60290:CDS 25.0%
! GAATTTCAATGTTAAATGGA+AGG - chr1.1:8524399-8524418 MS.gene60290:CDS 25.0%
! GTGCATTTATTTCAATGTAT+AGG - chr1.1:8524436-8524455 MS.gene60290:CDS 25.0%
! TCGATGTATGAATTCTTATA+GGG + chr1.1:8526134-8526153 None:intergenic 25.0%
! TTTCAATTATCACTTCACAT+TGG - chr1.1:8525260-8525279 MS.gene60290:intron 25.0%
!!! ATATTTACAGCTTTGAAACT+AGG - chr1.1:8526636-8526655 MS.gene60290:CDS 25.0%
!!! CATGGTTATCTTTTTAGTTA+GGG - chr1.1:8525576-8525595 MS.gene60290:intron 25.0%
!!! CTTATTGATTTAGTTCTTTC+AGG + chr1.1:8525534-8525553 None:intergenic 25.0%
!!! GCTAATATCCTTTTTAAAGA+TGG - chr1.1:8526798-8526817 MS.gene60290:CDS 25.0%
!!! TTGATTTTAACACTTGTACT+GGG - chr1.1:8526544-8526563 MS.gene60290:CDS 25.0%
AAAAGGATATTAGCAACTGA+AGG + chr1.1:8526792-8526811 None:intergenic 30.0%
AAAATCAACAACTTCAACCT+CGG + chr1.1:8526532-8526551 None:intergenic 30.0%
AAATTGTATGACGGTTCAAT+TGG - chr1.1:8524532-8524551 MS.gene60290:CDS 30.0%
AATCCGTTTCAAATGACATA+GGG + chr1.1:8524939-8524958 None:intergenic 30.0%
AGCAAAAACCAATATGTTGA+AGG - chr1.1:8526711-8526730 MS.gene60290:CDS 30.0%
ATTCCTGTGATGTATTATCT+TGG - chr1.1:8525462-8525481 MS.gene60290:intron 30.0%
ATTTCATGGATACTACCAAA+TGG - chr1.1:8526438-8526457 MS.gene60290:intron 30.0%
GAAGAACATTACATGGTTTA+AGG + chr1.1:8524771-8524790 None:intergenic 30.0%
GTCGATGTATGAATTCTTAT+AGG + chr1.1:8526135-8526154 None:intergenic 30.0%
TAGCTTGATAGAAGTCAAAA+GGG + chr1.1:8524475-8524494 None:intergenic 30.0%
TAGTTGGAAACAAAGTGAAA+AGG - chr1.1:8526664-8526683 MS.gene60290:CDS 30.0%
TATAGCATAGGGAAAATTAC+TGG - chr1.1:8524648-8524667 MS.gene60290:CDS 30.0%
TCATTGAGAAGAACATTACA+TGG + chr1.1:8524778-8524797 None:intergenic 30.0%
TCGGCATCAGAAAAAAAAAA+TGG + chr1.1:8525210-8525229 None:intergenic 30.0%
TTAAATGGAAGGGTTAGATT+TGG - chr1.1:8524410-8524429 MS.gene60290:CDS 30.0%
TTATGATCATGACCGATTAT+TGG - chr1.1:8525344-8525363 MS.gene60290:intron 30.0%
TTCCTGTGATGTATTATCTT+GGG - chr1.1:8525463-8525482 MS.gene60290:intron 30.0%
TTGAAACTAGGCATATTAGT+TGG - chr1.1:8526648-8526667 MS.gene60290:CDS 30.0%
TTTCATGGATACTACCAAAT+GGG - chr1.1:8526439-8526458 MS.gene60290:intron 30.0%
! ATTATGGATTTGTTCTAGTG+AGG - chr1.1:8526091-8526110 MS.gene60290:CDS 30.0%
! TTAGCTTGATAGAAGTCAAA+AGG + chr1.1:8524476-8524495 None:intergenic 30.0%
! TTATGGATTTGTTCTAGTGA+GGG - chr1.1:8526092-8526111 MS.gene60290:CDS 30.0%
!! AGAAAAGTATCAACATGTTG+AGG - chr1.1:8526572-8526591 MS.gene60290:CDS 30.0%
!! CATGTTTTGAGTATGATTTG+AGG - chr1.1:8525115-8525134 MS.gene60290:intron 30.0%
!! GTTGATTTTAACACTTGTAC+TGG - chr1.1:8526543-8526562 MS.gene60290:CDS 30.0%
!!! GCATGGTTATCTTTTTAGTT+AGG - chr1.1:8525575-8525594 MS.gene60290:intron 30.0%
!!! TGTTTTGACCTTCAACATAT+TGG + chr1.1:8526722-8526741 None:intergenic 30.0%
!!! TTTTGAGATTTGCATGAGTT+GGG + chr1.1:8526024-8526043 None:intergenic 30.0%
AATGTTATCTTGTGCCCTTA+AGG + chr1.1:8525756-8525775 None:intergenic 35.0%
AATTCTTAACATGTGCCATG+AGG + chr1.1:8525618-8525637 None:intergenic 35.0%
ACCAGTCAACATTTCAACAA+CGG + chr1.1:8524980-8524999 None:intergenic 35.0%
AGAGCTTCTGTTGGATTTAT+TGG - chr1.1:8526267-8526286 MS.gene60290:intron 35.0%
AGGAATACAGCTAATCTAGA+AGG + chr1.1:8525448-8525467 None:intergenic 35.0%
ATATTCTGCGCGTCTTTAAA+AGG - chr1.1:8525157-8525176 MS.gene60290:intron 35.0%
ATTCTTAACATGTGCCATGA+GGG + chr1.1:8525617-8525636 None:intergenic 35.0%
CCTGTGAATATTCCAAGATT+GGG - chr1.1:8525382-8525401 MS.gene60290:intron 35.0%
GAATCCGTTTCAAATGACAT+AGG + chr1.1:8524940-8524959 None:intergenic 35.0%
GAGCTTCTGTTGGATTTATT+GGG - chr1.1:8526268-8526287 MS.gene60290:intron 35.0%
GATGTTACATCCAATCAAAG+AGG - chr1.1:8524295-8524314 MS.gene60290:CDS 35.0%
TCCTGTGAATATTCCAAGAT+TGG - chr1.1:8525381-8525400 MS.gene60290:intron 35.0%
TGAATATTCCAAGATTGGGT+AGG - chr1.1:8525386-8525405 MS.gene60290:intron 35.0%
TTAGAACGTACTGCAGATTA+TGG - chr1.1:8526075-8526094 MS.gene60290:CDS 35.0%
TTCACATGATCCTCTTTGAT+TGG + chr1.1:8524308-8524327 None:intergenic 35.0%
TTCCCAAGATAATACATCAC+AGG + chr1.1:8525468-8525487 None:intergenic 35.0%
! ATGGTTTAAGGTTGAGAACA+AGG + chr1.1:8524759-8524778 None:intergenic 35.0%
! GTCATTTGAAACGGATTCAT+GGG - chr1.1:8524942-8524961 MS.gene60290:CDS 35.0%
! TCATTTGAAACGGATTCATG+GGG - chr1.1:8524943-8524962 MS.gene60290:CDS 35.0%
! TCTCATTACCTGATGTTTTG+AGG - chr1.1:8524587-8524606 MS.gene60290:CDS 35.0%
! TGTCATTTGAAACGGATTCA+TGG - chr1.1:8524941-8524960 MS.gene60290:CDS 35.0%
! TGTCCTGTTGGTGAAATATA+CGG - chr1.1:8525018-8525037 MS.gene60290:intron 35.0%
! TTTTAACACTTGTACTGGGA+TGG - chr1.1:8526548-8526567 MS.gene60290:CDS 35.0%
!! CTTCTTAACTTGTGCCTTAA+GGG - chr1.1:8525739-8525758 MS.gene60290:CDS 35.0%
!!! ATTTTAGAGCTTCACGCTAA+AGG - chr1.1:8524730-8524749 MS.gene60290:CDS 35.0%
!!! CTTGGGAAGTGTTTACATTT+TGG - chr1.1:8525480-8525499 MS.gene60290:intron 35.0%
!!! GTTTTGAGATTTGCATGAGT+TGG + chr1.1:8526025-8526044 None:intergenic 35.0%
!!! TTTTAGAGCTTCACGCTAAA+GGG - chr1.1:8524731-8524750 MS.gene60290:CDS 35.0%
AAACCCTTCAGAACTCGAAA+TGG - chr1.1:8526311-8526330 MS.gene60290:CDS 40.0%
AACATGTTGAGGATCATCAC+TGG - chr1.1:8526583-8526602 MS.gene60290:CDS 40.0%
AAGTTGGCTAGACTAAGAGA+TGG - chr1.1:8524559-8524578 MS.gene60290:CDS 40.0%
AATATTCACAGGACAGGTAC+AGG + chr1.1:8525374-8525393 None:intergenic 40.0%
AATGAACTGGCTAATGATGG+AGG - chr1.1:8525877-8525896 MS.gene60290:CDS 40.0%
ACACATCACCTCAAAACATC+AGG + chr1.1:8524598-8524617 None:intergenic 40.0%
ACATCTTAGCAGCAACTTCA+TGG + chr1.1:8524280-8524299 None:intergenic 40.0%
ACATGTTGAGGATCATCACT+GGG - chr1.1:8526584-8526603 MS.gene60290:CDS 40.0%
ACCGTTGTTGAAATGTTGAC+TGG - chr1.1:8524976-8524995 MS.gene60290:CDS 40.0%
AGCAAACACTAGAAACTCCT+TGG + chr1.1:8524370-8524389 None:intergenic 40.0%
AGGATATTCTCAATGGGAGA+AGG + chr1.1:8525090-8525109 None:intergenic 40.0%
ATGCCTAGTACAACTAGAAC+AGG + chr1.1:8526618-8526637 None:intergenic 40.0%
ATTACATGGCTCCAGAACAA+TGG - chr1.1:8524896-8524915 MS.gene60290:CDS 40.0%
ATTCATTCTGCCTATGTTGC+AGG - chr1.1:8525848-8525867 MS.gene60290:CDS 40.0%
ATTCGAATGGCGTCGTAAAA+GGG - chr1.1:8526392-8526411 MS.gene60290:intron 40.0%
CAAAACATGAATGTCCCAGA+CGG - chr1.1:8526039-8526058 MS.gene60290:CDS 40.0%
CATACTCAAAACATGCACCA+AGG + chr1.1:8525110-8525129 None:intergenic 40.0%
CATTCCATCAATCGCAATGA+CGG - chr1.1:8526243-8526262 MS.gene60290:intron 40.0%
CCCAATCTTGGAATATTCAC+AGG + chr1.1:8525385-8525404 None:intergenic 40.0%
CCTACAAGGATTATAACCCA+TGG - chr1.1:8526747-8526766 MS.gene60290:CDS 40.0%
CGCAGAATATCTACCATTGA+AGG + chr1.1:8525147-8525166 None:intergenic 40.0%
CTGAATGAACTGGCTAATGA+TGG - chr1.1:8525874-8525893 MS.gene60290:CDS 40.0%
GAAGAGCCAAGCAAAAGATT+GGG + chr1.1:8524835-8524854 None:intergenic 40.0%
GATACTACCAAATGGGTGTT+TGG - chr1.1:8526446-8526465 MS.gene60290:intron 40.0%
GATCCGTATATTTCACCAAC+AGG + chr1.1:8525024-8525043 None:intergenic 40.0%
GCACCAAGGATATTCTCAAT+GGG + chr1.1:8525096-8525115 None:intergenic 40.0%
GCTTGGAAGTCCTAATTACA+TGG - chr1.1:8524882-8524901 MS.gene60290:CDS 40.0%
GGTACAGGTTCACCAATAAT+CGG + chr1.1:8525359-8525378 None:intergenic 40.0%
GGTACGCTTGAAAGATGAAA+AGG - chr1.1:8526194-8526213 MS.gene60290:intron 40.0%
GGTCAATACTAAGGATGTGT+TGG - chr1.1:8524669-8524688 MS.gene60290:CDS 40.0%
GTCAAAACAACAGTCCTACA+AGG - chr1.1:8526733-8526752 MS.gene60290:CDS 40.0%
GTTTGGTTGTCAAGTTTCCA+GGG - chr1.1:8526463-8526482 MS.gene60290:intron 40.0%
TATTCTCAATGGGAGAAGGA+AGG + chr1.1:8525086-8525105 None:intergenic 40.0%
TCAAAGGATCAACTTCAGGT+GGG - chr1.1:8525973-8525992 MS.gene60290:CDS 40.0%
TCTCCCATTGAGAATATCCT+TGG - chr1.1:8525090-8525109 MS.gene60290:intron 40.0%
TCTTGGAATATTCACAGGAC+AGG + chr1.1:8525380-8525399 None:intergenic 40.0%
TGAAGAGCCAAGCAAAAGAT+TGG + chr1.1:8524836-8524855 None:intergenic 40.0%
TGCACCAAGGATATTCTCAA+TGG + chr1.1:8525097-8525116 None:intergenic 40.0%
TGCTGAAGTTTCAAAGGTTC+AGG + chr1.1:8524182-8524201 None:intergenic 40.0%
TGGGAATGAATCAAACACCT+TGG - chr1.1:8526497-8526516 MS.gene60290:CDS 40.0%
TGTTTGGTTGTCAAGTTTCC+AGG - chr1.1:8526462-8526481 MS.gene60290:intron 40.0%
TTAGCTCAGATATTGCTCAG+AGG - chr1.1:8524860-8524879 MS.gene60290:CDS 40.0%
TTATAGGGTCATGAATACCG+TGG + chr1.1:8526119-8526138 None:intergenic 40.0%
TTCAGGTACAGACATTATCC+TGG + chr1.1:8525517-8525536 None:intergenic 40.0%
TTGACAACCAAACACCCATT+TGG + chr1.1:8526456-8526475 None:intergenic 40.0%
TTTGAGGAATCGACCTTCAA+TGG - chr1.1:8525131-8525150 MS.gene60290:intron 40.0%
! AAAGGTTCAGGTTCAATCCA+TGG + chr1.1:8524170-8524189 None:intergenic 40.0%
! AAGGATGTGTTGGTCGTTAA+TGG - chr1.1:8524679-8524698 MS.gene60290:CDS 40.0%
! ACAAAGTGAAAAGGTGCAAG+AGG - chr1.1:8526673-8526692 MS.gene60290:CDS 40.0%
! AGACCTGTTCTAGTTGTACT+AGG - chr1.1:8526612-8526631 MS.gene60290:CDS 40.0%
! AGGCCCTATGTCATTTGAAA+CGG - chr1.1:8524933-8524952 MS.gene60290:CDS 40.0%
! CCATGGGTTATAATCCTTGT+AGG + chr1.1:8526750-8526769 None:intergenic 40.0%
! GAATTATGCTTGAAGTGCCA+AGG - chr1.1:8524350-8524369 MS.gene60290:CDS 40.0%
! GACAACGATCAAGCGATTTT+GGG - chr1.1:8524796-8524815 MS.gene60290:CDS 40.0%
! GGGCTTAACACATTCTCTTT+TGG + chr1.1:8526369-8526388 None:intergenic 40.0%
! GGTATTCCCAATCTTTTGCT+TGG - chr1.1:8524826-8524845 MS.gene60290:CDS 40.0%
! TCTAGTGTTTGCTGGTTACA+TGG - chr1.1:8524377-8524396 MS.gene60290:CDS 40.0%
! TCTCTTTTGGCCTAACAAAC+TGG + chr1.1:8526356-8526375 None:intergenic 40.0%
! TGACAACGATCAAGCGATTT+TGG - chr1.1:8524795-8524814 MS.gene60290:CDS 40.0%
! TTGAAACTTCAGCACCGAAT+TGG - chr1.1:8524188-8524207 MS.gene60290:CDS 40.0%
!! AAGGAGTTTCTAGTGTTTGC+TGG - chr1.1:8524369-8524388 MS.gene60290:CDS 40.0%
!! ATTCGGTGCTGAAGTTTCAA+AGG + chr1.1:8524188-8524207 None:intergenic 40.0%
!! GCTTCTTAACTTGTGCCTTA+AGG - chr1.1:8525738-8525757 MS.gene60290:CDS 40.0%
!! TGAAAAGGAAAAGCACTCAC+CGG - chr1.1:8526209-8526228 MS.gene60290:intron 40.0%
!! TGTTCTGGAGCCATGTAATT+AGG + chr1.1:8524895-8524914 None:intergenic 40.0%
AACCCATGGCAACACAACAT+GGG - chr1.1:8526761-8526780 MS.gene60290:CDS 45.0%
AACTTCAACCTCGGAAGGAT+CGG + chr1.1:8526523-8526542 None:intergenic 45.0%
AATGACGGTAGAGCTTCTGT+TGG - chr1.1:8526258-8526277 MS.gene60290:intron 45.0%
AATGGCAGAATCATTCTGCG+TGG - chr1.1:8526329-8526348 MS.gene60290:CDS 45.0%
ACAACAGACCTACCCAATCT+TGG + chr1.1:8525397-8525416 None:intergenic 45.0%
ACTGGTAGTCAACCTTGGTA+TGG - chr1.1:8524994-8525013 MS.gene60290:CDS 45.0%
AGATTGGGTAGGTCTGTTGT+AGG - chr1.1:8525397-8525416 MS.gene60290:intron 45.0%
ATGGAATGTAGAATCCCCAC+CGG + chr1.1:8526231-8526250 None:intergenic 45.0%
ATGGCAGAATCATTCTGCGT+GGG - chr1.1:8526330-8526349 MS.gene60290:CDS 45.0%
CAGACATTATCCTGGATCAG+AGG + chr1.1:8525509-8525528 None:intergenic 45.0%
CATTCAGTGACCTGCAACAT+AGG + chr1.1:8525861-8525880 None:intergenic 45.0%
CCTCTCAAAGGATCAACTTC+AGG - chr1.1:8525969-8525988 MS.gene60290:CDS 45.0%
CTCAAAGGATCAACTTCAGG+TGG - chr1.1:8525972-8525991 MS.gene60290:CDS 45.0%
CTGCTACTGGTAGGATTTCA+TGG - chr1.1:8526424-8526443 MS.gene60290:intron 45.0%
GAAAAGCTGCATATCCCAAG+TGG - chr1.1:8525060-8525079 MS.gene60290:intron 45.0%
GATTCGAATGGCGTCGTAAA+AGG - chr1.1:8526391-8526410 MS.gene60290:intron 45.0%
GCAAGCCAAACATCACCAAA+GGG + chr1.1:8524221-8524240 None:intergenic 45.0%
TAACCCATGGCAACACAACA+TGG - chr1.1:8526760-8526779 MS.gene60290:CDS 45.0%
TCAACAACTTCAACCTCGGA+AGG + chr1.1:8526528-8526547 None:intergenic 45.0%
TCAGATATTGCTCAGAGGCT+TGG - chr1.1:8524865-8524884 MS.gene60290:CDS 45.0%
TCCAGAACAATGGAAACCAG+AGG - chr1.1:8524906-8524925 MS.gene60290:CDS 45.0%
TCTACCGTCATTGCGATTGA+TGG + chr1.1:8526250-8526269 None:intergenic 45.0%
TGAAATCCTACCAGTAGCAG+AGG + chr1.1:8526424-8526443 None:intergenic 45.0%
TGCAAGCCAAACATCACCAA+AGG + chr1.1:8524222-8524241 None:intergenic 45.0%
TGGCTAGACTAAGAGATGGA+TGG - chr1.1:8524563-8524582 MS.gene60290:CDS 45.0%
TGTTGTAGGACTAGAGCTCA+AGG - chr1.1:8525411-8525430 MS.gene60290:intron 45.0%
TTATTGGGCTGCAAACTCTC+TGG - chr1.1:8526283-8526302 MS.gene60290:intron 45.0%
TTCGAATGGCGTCGTAAAAG+GGG - chr1.1:8526393-8526412 MS.gene60290:intron 45.0%
TTGCAGGTCACTGAATGAAC+TGG - chr1.1:8525864-8525883 MS.gene60290:CDS 45.0%
TTGGTCGTTAATGGCAGGTA+CGG - chr1.1:8524688-8524707 MS.gene60290:CDS 45.0%
TTTGTTCTAGTGAGGGTCCA+CGG - chr1.1:8526099-8526118 MS.gene60290:CDS 45.0%
! ACCTCTGGTTTCCATTGTTC+TGG + chr1.1:8524910-8524929 None:intergenic 45.0%
! ATCCTTTGAGAGGAACCACT+CGG + chr1.1:8525962-8525981 None:intergenic 45.0%
! ATGTGTTGGTCGTTAATGGC+AGG - chr1.1:8524683-8524702 MS.gene60290:CDS 45.0%
! CCTGAAGTTGATCCTTTGAG+AGG + chr1.1:8525972-8525991 None:intergenic 45.0%
! CGGTTCAATTGGTGACAAGT+TGG - chr1.1:8524543-8524562 MS.gene60290:CDS 45.0%
! GAAACGGATTCATGGGGATT+CGG - chr1.1:8524949-8524968 MS.gene60290:CDS 45.0%
! TAGTCAGTGCTGCCTGATTT+TGG + chr1.1:8525937-8525956 None:intergenic 45.0%
! TCGGAACAGCAGCAGTTTTA+GGG + chr1.1:8524133-8524152 None:intergenic 45.0%
! TGAGATTTGCATGAGTTGGG+AGG + chr1.1:8526021-8526040 None:intergenic 45.0%
! TGTTAAGCCCTCGATTCGAA+TGG - chr1.1:8526379-8526398 MS.gene60290:intron 45.0%
! TGTTGACTGGTAGTCAACCT+TGG - chr1.1:8524989-8525008 MS.gene60290:CDS 45.0%
! TTCCAGGGATGGTGAGTTTT+GGG - chr1.1:8526478-8526497 MS.gene60290:CDS 45.0%
! TTTCCAGGGATGGTGAGTTT+TGG - chr1.1:8526477-8526496 MS.gene60290:CDS 45.0%
!! AGTGTTAACTTGTGCCCTCA+TGG - chr1.1:8525600-8525619 MS.gene60290:intron 45.0%
!! CTGCCATTTCGAGTTCTGAA+GGG + chr1.1:8526317-8526336 None:intergenic 45.0%
!! TCTGCCATTTCGAGTTCTGA+AGG + chr1.1:8526318-8526337 None:intergenic 45.0%
!!! ATTTTGGCTTCCTCTGATCC+AGG - chr1.1:8525496-8525515 MS.gene60290:intron 45.0%
AAGCTGTTTGTGCACGAGCA+TGG - chr1.1:8525558-8525577 MS.gene60290:intron 50.0%
AATCCATGGACTTGCGCGAT+TGG + chr1.1:8524156-8524175 None:intergenic 50.0%
AATGGCGTCGTAAAAGGGGA+GGG - chr1.1:8526397-8526416 MS.gene60290:intron 50.0%
ACCCATGGCAACACAACATG+GGG - chr1.1:8526762-8526781 MS.gene60290:CDS 50.0%
ACTCTTGAACGCGTCACGAA+TGG - chr1.1:8526153-8526172 MS.gene60290:CDS 50.0%
AGTTGGGAGGCTTTCTGGAT+CGG + chr1.1:8526008-8526027 None:intergenic 50.0%
CAAAGGGTCCTCGACCAATT+CGG + chr1.1:8524205-8524224 None:intergenic 50.0%
CAATGGAAACCAGAGGTCAG+AGG - chr1.1:8524913-8524932 MS.gene60290:CDS 50.0%
CCAACAGGACATCCATACCA+AGG + chr1.1:8525009-8525028 None:intergenic 50.0%
CCTTGGTATGGATGTCCTGT+TGG - chr1.1:8525006-8525025 MS.gene60290:CDS 50.0%
GGAGGAGGATGGAGATATCA+AGG - chr1.1:8525895-8525914 MS.gene60290:CDS 50.0%
GGTTGTCAAGTTTCCAGGGA+TGG - chr1.1:8526467-8526486 MS.gene60290:intron 50.0%
TACGACGCCATTCGAATCGA+GGG + chr1.1:8526389-8526408 None:intergenic 50.0%
TCAACTTCAGGTGGGTGACA+TGG - chr1.1:8525981-8526000 MS.gene60290:CDS 50.0%
TGGTCGTTAATGGCAGGTAC+GGG - chr1.1:8524689-8524708 MS.gene60290:CDS 50.0%
TTACGACGCCATTCGAATCG+AGG + chr1.1:8526390-8526409 None:intergenic 50.0%
TTCCCAAAACTCACCATCCC+TGG + chr1.1:8526483-8526502 None:intergenic 50.0%
! GAACTGGCTAATGATGGAGG+AGG - chr1.1:8525880-8525899 MS.gene60290:CDS 50.0%
! GTCGGAACAGCAGCAGTTTT+AGG + chr1.1:8524134-8524153 None:intergenic 50.0%
! TGGCTAATGATGGAGGAGGA+TGG - chr1.1:8525884-8525903 MS.gene60290:CDS 50.0%
!! AAAGGAAAAGCACTCACCGG+TGG - chr1.1:8526212-8526231 MS.gene60290:intron 50.0%
!! AAGGAAAAGCACTCACCGGT+GGG - chr1.1:8526213-8526232 MS.gene60290:intron 50.0%
!! CAAGCGATTTTGGGAGACGT+TGG - chr1.1:8524805-8524824 MS.gene60290:CDS 50.0%
!! GAGGACCCTTTGGTGATGTT+TGG - chr1.1:8524213-8524232 MS.gene60290:CDS 50.0%
!!! AGCAGCAGTTTTAGGGACGT+CGG + chr1.1:8524126-8524145 None:intergenic 50.0%
AAGCCAACGACAGTTCCGTC+TGG + chr1.1:8526057-8526076 None:intergenic 55.0%
AGCCAACGACAGTTCCGTCT+GGG + chr1.1:8526056-8526075 None:intergenic 55.0%
ATGGCGTCGTAAAAGGGGAG+GGG - chr1.1:8526398-8526417 MS.gene60290:intron 55.0%
ATGGGAGAAGGAAGGCCACT+TGG + chr1.1:8525078-8525097 None:intergenic 55.0%
CACCGAGTGGTTCCTCTCAA+AGG - chr1.1:8525957-8525976 MS.gene60290:CDS 55.0%
CATGGACTTGCGCGATTGGT+CGG + chr1.1:8524152-8524171 None:intergenic 55.0%
CCATGGCAACACAACATGGG+GGG - chr1.1:8526764-8526783 MS.gene60290:CDS 55.0%
CCCATGGCAACACAACATGG+GGG - chr1.1:8526763-8526782 MS.gene60290:CDS 55.0%
CCCCCATGTTGTGTTGCCAT+GGG + chr1.1:8526766-8526785 None:intergenic 55.0%
CGAATTGGTCGAGGACCCTT+TGG - chr1.1:8524203-8524222 MS.gene60290:CDS 55.0%
GAATGGCGTCGTAAAAGGGG+AGG - chr1.1:8526396-8526415 MS.gene60290:intron 55.0%
TGGGAGAAGGAAGGCCACTT+GGG + chr1.1:8525077-8525096 None:intergenic 55.0%
! CTTCAGCACCGAATTGGTCG+AGG - chr1.1:8524194-8524213 MS.gene60290:CDS 55.0%
! GCATGAGTTGGGAGGCTTTC+TGG + chr1.1:8526013-8526032 None:intergenic 55.0%
! GGGCTGCAAACTCTCTGGAA+TGG - chr1.1:8526288-8526307 MS.gene60290:intron 55.0%
! TACGGGATCGATCTGGCTCA+AGG - chr1.1:8524706-8524725 MS.gene60290:CDS 55.0%
! TCTGCGTGGGCCAGTTTGTT+AGG - chr1.1:8526343-8526362 MS.gene60290:CDS 55.0%
!! AGGAAAAGCACTCACCGGTG+GGG - chr1.1:8526214-8526233 MS.gene60290:intron 55.0%
AACCTCGGAAGGATCGGCCA+AGG + chr1.1:8526517-8526536 None:intergenic 60.0%
ATGGCCTGGCAGCTGGTGAT+TGG - chr1.1:8526172-8526191 MS.gene60290:CDS 60.0%
CCCCCCATGTTGTGTTGCCA+TGG + chr1.1:8526767-8526786 None:intergenic 60.0%
CGACCAATCGCGCAAGTCCA+TGG - chr1.1:8524150-8524169 MS.gene60290:CDS 60.0%
GACATAGGGCCTCTGACCTC+TGG + chr1.1:8524925-8524944 None:intergenic 60.0%
GTACCCAATCACCAGCTGCC+AGG + chr1.1:8526179-8526198 None:intergenic 60.0%
GTCCCAGACGGAACTGTCGT+TGG - chr1.1:8526051-8526070 MS.gene60290:CDS 60.0%
TGAACGCGTCACGAATGGCC+TGG - chr1.1:8526158-8526177 MS.gene60290:CDS 60.0%
TGGCAGGTACGGGATCGATC+TGG - chr1.1:8524699-8524718 MS.gene60290:CDS 60.0%
TGGCCTGGCAGCTGGTGATT+GGG - chr1.1:8526173-8526192 MS.gene60290:CDS 60.0%
!! GCAGCACTGACTACACCGAG+TGG - chr1.1:8525944-8525963 MS.gene60290:CDS 60.0%
CACCTTGGCCGATCCTTCCG+AGG - chr1.1:8526512-8526531 MS.gene60290:CDS 65.0%
GAGGGGCCTCTGCTACTGGT+AGG - chr1.1:8526415-8526434 MS.gene60290:intron 65.0%
GTCACGAATGGCCTGGCAGC+TGG - chr1.1:8526165-8526184 MS.gene60290:CDS 65.0%
AGGGGAGGGGCCTCTGCTAC+TGG - chr1.1:8526411-8526430 MS.gene60290:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 8524071 8526827 8524071 ID=MS.gene60290
chr1.1 mRNA 8524071 8526827 8524071 ID=MS.gene60290.t1;Parent=MS.gene60290
chr1.1 exon 8526477 8526827 8526477 ID=MS.gene60290.t1.exon1;Parent=MS.gene60290.t1
chr1.1 CDS 8526477 8526827 8526477 ID=cds.MS.gene60290.t1;Parent=MS.gene60290.t1
chr1.1 exon 8526290 8526381 8526290 ID=MS.gene60290.t1.exon2;Parent=MS.gene60290.t1
chr1.1 CDS 8526290 8526381 8526290 ID=cds.MS.gene60290.t1;Parent=MS.gene60290.t1
chr1.1 exon 8525720 8526193 8525720 ID=MS.gene60290.t1.exon3;Parent=MS.gene60290.t1
chr1.1 CDS 8525720 8526193 8525720 ID=cds.MS.gene60290.t1;Parent=MS.gene60290.t1
chr1.1 exon 8524071 8525028 8524071 ID=MS.gene60290.t1.exon4;Parent=MS.gene60290.t1
chr1.1 CDS 8524071 8525028 8524071 ID=cds.MS.gene60290.t1;Parent=MS.gene60290.t1
Gene Sequence

>MS.gene60290

ATGGCTTCTTCATCAGCTGCTTCTTTTGATTATGAGATTTTGGATAAAGATACCGACGTCCCTAAAACTGCTGCTGTTCCGACCAATCGCGCAAGTCCATGGATTGAACCTGAACCTTTGAAACTTCAGCACCGAATTGGTCGAGGACCCTTTGGTGATGTTTGGCTTGCAACTCTTCATCAGTCAACTGAAGATTATGATGAGCACCATGAAGTTGCTGCTAAGATGTTACATCCAATCAAAGAGGATCATGTGAAGATTGTATTGAAGAAATTCAATGAATTATGCTTGAAGTGCCAAGGAGTTTCTAGTGTTTGCTGGTTACATGGAATTTCAATGTTAAATGGAAGGGTTAGATTTGGACTGTGCATTTATTTCAATGTATAGGATATTGTTTGCTACCCTTTTGACTTCTATCAAGCTAACACATTTGTTTGTATTCACAGATCTGCATCATTATGAAATTGTATGACGGTTCAATTGGTGACAAGTTGGCTAGACTAAGAGATGGATGGATCTCATTACCTGATGTTTTGAGGTGATGTGTTTTCAGAAAAACATGCTTATCTTTAACTTATATAGCATAGGGAAAATTACTGGTCAATACTAAGGATGTGTTGGTCGTTAATGGCAGGTACGGGATCGATCTGGCTCAAGGCATTTTAGAGCTTCACGCTAAAGGGATCCTTGTTCTCAACCTTAAACCATGTAATGTTCTTCTCAATGACAACGATCAAGCGATTTTGGGAGACGTTGGTATTCCCAATCTTTTGCTTGGCTCTTCATTCGTTAGCTCAGATATTGCTCAGAGGCTTGGAAGTCCTAATTACATGGCTCCAGAACAATGGAAACCAGAGGTCAGAGGCCCTATGTCATTTGAAACGGATTCATGGGGATTCGGATGCACCGTTGTTGAAATGTTGACTGGTAGTCAACCTTGGTATGGATGTCCTGTTGGTGAAATATACGGATCAGTTGTCGAAAAGCATGAAAAGCTGCATATCCCAAGTGGCCTTCCTTCTCCCATTGAGAATATCCTTGGTGCATGTTTTGAGTATGATTTGAGGAATCGACCTTCAATGGTAGATATTCTGCGCGTCTTTAAAAGGTTTGTATGCAGATGTATCAATCTGAAGCCATTTTTTTTTTCTGATGCCGATTCTTGTTTAATTTAGCATGTAGTTTCAATTTTCAATTATCACTTCACATTGGAGAAAAATACTTCACATGAAAACTTCTTAGATTCTTTAAAAGAAATTTCTGTAGTAATGAGTTATGATCATGACCGATTATTGGTGAACCTGTACCTGTCCTGTGAATATTCCAAGATTGGGTAGGTCTGTTGTAGGACTAGAGCTCAAGGTTAAATGAAAGCCTTCTAGATTAGCTGTATTCCTGTGATGTATTATCTTGGGAAGTGTTTACATTTTGGCTTCCTCTGATCCAGGATAATGTCTGTACCTGAAAGAACTAAATCAATAAGCATGAAGCTGTTTGTGCACGAGCATGGTTATCTTTTTAGTTAGGGTAGTGTTAACTTGTGCCCTCATGGCACATGTTAAGAATTTAAAAATGGAATTAAATAATAAATTTTGTCTTGAAAAGATAAGATTTCAAATTTCAAGAATATTGAATGCACAATTTCCAACAAAATATTTCTATCTTTGGCTTCTTAACTTGTGCCTTAAGGGCACAAGATAACATTTTCCTTTTAGTTAATATCTATTTATCTTCATGCAGATAAGAAATAATTTATGTTGAATATTACTTTATTCTTATTCATTCTGCCTATGTTGCAGGTCACTGAATGAACTGGCTAATGATGGAGGAGGATGGAGATATCAAGGAAACATGAAAGTAATTCCAAAATCAGGCAGCACTGACTACACCGAGTGGTTCCTCTCAAAGGATCAACTTCAGGTGGGTGACATGGTCCGATCCAGAAAGCCTCCCAACTCATGCAAATCTCAAAACATGAATGTCCCAGACGGAACTGTCGTTGGCTTAGAACGTACTGCAGATTATGGATTTGTTCTAGTGAGGGTCCACGGTATTCATGACCCTATAAGAATTCATACATCGACTCTTGAACGCGTCACGAATGGCCTGGCAGCTGGTGATTGGGTACGCTTGAAAGATGAAAAGGAAAAGCACTCACCGGTGGGGATTCTACATTCCATCAATCGCAATGACGGTAGAGCTTCTGTTGGATTTATTGGGCTGCAAACTCTCTGGAATGGAAACCCTTCAGAACTCGAAATGGCAGAATCATTCTGCGTGGGCCAGTTTGTTAGGCCAAAAGAGAATGTGTTAAGCCCTCGATTCGAATGGCGTCGTAAAAGGGGAGGGGCCTCTGCTACTGGTAGGATTTCATGGATACTACCAAATGGGTGTTTGGTTGTCAAGTTTCCAGGGATGGTGAGTTTTGGGAATGAATCAAACACCTTGGCCGATCCTTCCGAGGTTGAAGTTGTTGATTTTAACACTTGTACTGGGATGGTAGAAAAGTATCAACATGTTGAGGATCATCACTGGGCTGTAAGACCTGTTCTAGTTGTACTAGGCATATTTACAGCTTTGAAACTAGGCATATTAGTTGGAAACAAAGTGAAAAGGTGCAAGAGGTTCAATGCAAAAGAAAGCAAAAACCAATATGTTGAAGGTCAAAACAACAGTCCTACAAGGATTATAACCCATGGCAACACAACATGGGGGGTTCCTTCAGTTGCTAATATCCTTTTTAAAGATGGTGCTTAA
Protein sequence

>MS.gene60290.t1

MASSSAASFDYEILDKDTDVPKTAAVPTNRASPWIEPEPLKLQHRIGRGPFGDVWLATLHQSTEDYDEHHEVAAKMLHPIKEDHVKIVLKKFNELCLKCQGVSSVCWLHGISMLNGRICIIMKLYDGSIGDKLARLRDGWISLPDVLRYGIDLAQGILELHAKGILVLNLKPCNVLLNDNDQAILGDVGIPNLLLGSSFVSSDIAQRLGSPNYMAPEQWKPEVRGPMSFETDSWGFGCTVVEMLTGSQPWYGCPVGEIYGSVVEKHEKLHIPSGLPSPIENILGACFEYDLRNRPSMVDILRVFKRSLNELANDGGGWRYQGNMKVIPKSGSTDYTEWFLSKDQLQVGDMVRSRKPPNSCKSQNMNVPDGTVVGLERTADYGFVLVRVHGIHDPIRIHTSTLERVTNGLAAGDWVRLKDEKEKHSPVGILHSINRNDGRASVGFIGLQTLWNGNPSELEMAESFCVGQFVRPKENVLSPRFEWRRKRGGASATGRISWILPNGCLVVKFPGMVSFGNESNTLADPSEVEVVDFNTCTGMVEKYQHVEDHHWAVRPVLVVLGIFTALKLGILVGNKVKRCKRFNAKESKNQYVEGQNNSPTRIITHGNTTWGVPSVANILFKDGA