Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60342.t1 | XP_003608956.1 | 95.6 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 3.20E-102 | 380.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60342.t1 | Q94JX5 | 69.1 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 2.3e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60342.t1 | G7JNV0 | 95.6 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 2.3e-102 | 380.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60342.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60342.t1 | MTR_4g106800 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.92e-130 | 363 |
| MS.gene60342.t1 | MTR_1g017950 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 3.42e-89 | 259 |
| MS.gene60342.t1 | MTR_3g070050 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 6.48e-69 | 208 |
| MS.gene60342.t1 | MTR_8g097300 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 7.83e-62 | 191 |
| MS.gene60342.t1 | MTR_8g097300 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 7.45e-20 | 83.2 |
| MS.gene60342.t1 | MTR_8g031490 | 50.279 | 179 | 76 | 2 | 3 | 177 | 2 | 171 | 7.31e-60 | 185 |
| MS.gene60342.t1 | MTR_7g076720 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 6.17e-58 | 181 |
| MS.gene60342.t1 | MTR_7g076720 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 2.19e-15 | 71.2 |
| MS.gene60342.t1 | MTR_7g076720 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 4.34e-15 | 70.5 |
| MS.gene60342.t1 | MTR_3g070050 | 49.286 | 140 | 66 | 3 | 45 | 181 | 2 | 139 | 1.41e-44 | 144 |
| MS.gene60342.t1 | MTR_3g070050 | 44.944 | 89 | 48 | 1 | 4 | 92 | 61 | 148 | 6.02e-20 | 82.0 |
| MS.gene60342.t1 | MTR_1g106100 | 47.748 | 111 | 51 | 2 | 60 | 168 | 20 | 125 | 4.19e-32 | 113 |
| MS.gene60342.t1 | MTR_3g070033 | 50.847 | 59 | 29 | 0 | 123 | 181 | 6 | 64 | 1.40e-18 | 76.3 |
| MS.gene60342.t1 | MTR_3g070033 | 43.478 | 69 | 38 | 1 | 24 | 92 | 6 | 73 | 1.49e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60342.t1 | AT1G10200 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.47e-90 | 263 |
| MS.gene60342.t1 | AT3G55770 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.36e-70 | 212 |
| MS.gene60342.t1 | AT3G55770 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.36e-70 | 212 |
| MS.gene60342.t1 | AT3G55770 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.36e-70 | 212 |
| MS.gene60342.t1 | AT3G55770 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.36e-70 | 212 |
| MS.gene60342.t1 | AT2G39900 | 53.073 | 179 | 84 | 0 | 3 | 181 | 2 | 180 | 5.09e-69 | 208 |
| MS.gene60342.t1 | AT3G61230 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 7.83e-67 | 203 |
| MS.gene60342.t1 | AT3G61230 | 41.758 | 91 | 53 | 0 | 4 | 94 | 100 | 190 | 4.24e-18 | 78.6 |
| MS.gene60342.t1 | AT3G61230 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 6.06e-16 | 72.8 |
| MS.gene60342.t1 | AT1G01780 | 52.326 | 172 | 75 | 2 | 3 | 173 | 2 | 167 | 5.17e-63 | 193 |
| MS.gene60342.t1 | AT1G01780 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.70e-17 | 75.9 |
| MS.gene60342.t1 | AT2G45800 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 7.76e-63 | 194 |
| MS.gene60342.t1 | AT2G45800 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 8.44e-18 | 78.2 |
| MS.gene60342.t1 | AT2G45800 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.40e-16 | 74.7 |
| MS.gene60342.t1 | AT3G55770 | 47.196 | 214 | 76 | 3 | 3 | 181 | 2 | 213 | 1.04e-62 | 194 |
| MS.gene60342.t1 | AT1G10200 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.40e-62 | 190 |
| MS.gene60342.t1 | AT1G10200 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.79e-16 | 72.4 |
| MS.gene60342.t1 | AT3G55770 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.77e-43 | 141 |
| MS.gene60342.t1 | AT3G55770 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.23e-18 | 77.0 |
| MS.gene60342.t1 | AT2G45800 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.37e-42 | 141 |
| MS.gene60342.t1 | AT2G45800 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.17e-18 | 78.6 |
| MS.gene60342.t1 | AT3G55770 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.84e-40 | 134 |
| MS.gene60342.t1 | AT3G55770 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 1.97e-18 | 77.4 |
Find 30 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | 8.2:+19107460 | MS.gene60342:CDS |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | 8.2:-19107453 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | 8.2:+19106104 | MS.gene60342:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | 8.2:+19104889 | None:intergenic |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | 8.2:+19104932 | MS.gene60342:CDS |
| TATGGTGATGTCTACAATAA+AGG | 0.395154 | 8.2:-19107399 | None:intergenic |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | 8.2:-19107370 | None:intergenic |
| TCTGTTTGAAGATCTGAGTA+TGG | 0.453506 | 8.2:-19107417 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | 8.2:+19107444 | MS.gene60342:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | 8.2:+19107320 | MS.gene60342:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | 8.2:+19106279 | MS.gene60342:CDS |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | 8.2:+19106096 | MS.gene60342:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | 8.2:+19106459 | MS.gene60342:CDS |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | 8.2:-19106087 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | 8.2:-19107324 | None:intergenic |
| TACTCAGATCTTCAAACAGA+AGG | 0.531322 | 8.2:+19107420 | MS.gene60342:CDS |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | 8.2:+19104999 | MS.gene60342:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | 8.2:-19105008 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | 8.2:+19107331 | MS.gene60342:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | 8.2:+19105000 | MS.gene60342:CDS |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | 8.2:+19107461 | MS.gene60342:CDS |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | 8.2:-19105011 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | 8.2:+19104933 | MS.gene60342:CDS |
| ACTCAGATCTTCAAACAGAA+GGG | 0.607367 | 8.2:+19107421 | MS.gene60342:CDS |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | 8.2:+19107363 | MS.gene60342:CDS |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | 8.2:+19105011 | MS.gene60342:CDS |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | 8.2:+19107334 | MS.gene60342:CDS |
| ACAGGTCGAAGCATATAACA+AGG | 0.699921 | 8.2:+19106387 | MS.gene60342:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | 8.2:+19104936 | MS.gene60342:CDS |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | 8.2:-19104987 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATAATGTATTT+CGG | - | chr8.2:19105497-19105516 | None:intergenic | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | + | chr8.2:19105835-19105854 | MS.gene60342:intron | 10.0% |
| !!! | TTTAATTTTTCAATTGTAAA+TGG | + | chr8.2:19105705-19105724 | MS.gene60342:intron | 10.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | - | chr8.2:19106747-19106766 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | + | chr8.2:19106598-19106617 | MS.gene60342:intron | 15.0% |
| !! | TATTAAATCTAAATTTACTG+AGG | - | chr8.2:19105331-19105350 | None:intergenic | 15.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | + | chr8.2:19105120-19105139 | MS.gene60342:intron | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | + | chr8.2:19105206-19105225 | MS.gene60342:intron | 15.0% |
| !!! | AATATATATACCTTTTCAAT+TGG | - | chr8.2:19106472-19106491 | None:intergenic | 15.0% |
| !!! | ATATATATACCTTTTCAATT+GGG | - | chr8.2:19106471-19106490 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | - | chr8.2:19105376-19105395 | None:intergenic | 15.0% |
| !! | AAAAGTTCTATAACACTATT+TGG | - | chr8.2:19105742-19105761 | None:intergenic | 20.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | - | chr8.2:19105149-19105168 | None:intergenic | 20.0% |
| !! | AATAGATATATAAAATGAGC+TGG | + | chr8.2:19106855-19106874 | MS.gene60342:intron | 20.0% |
| !! | AGTTAGTATTTAATTAACCA+AGG | + | chr8.2:19106926-19106945 | MS.gene60342:intron | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | - | chr8.2:19106231-19106250 | None:intergenic | 20.0% |
| !! | GAAAACTAAAAACAAAAGTT+TGG | - | chr8.2:19105044-19105063 | None:intergenic | 20.0% |
| !! | GTTAGTATTTAATTAACCAA+GGG | + | chr8.2:19106927-19106946 | MS.gene60342:intron | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | - | chr8.2:19105150-19105169 | None:intergenic | 20.0% |
| !!! | AATTTTTTTATTTACTCCCT+TGG | - | chr8.2:19106946-19106965 | None:intergenic | 20.0% |
| !!! | ATTTAATATTTTCAGAACTG+AGG | + | chr8.2:19105343-19105362 | MS.gene60342:intron | 20.0% |
| !!! | TTTTAACAATAAAGATGAGA+AGG | - | chr8.2:19106661-19106680 | None:intergenic | 20.0% |
| ! | ACCACTAATGTAAAAAACAT+AGG | - | chr8.2:19105870-19105889 | None:intergenic | 25.0% |
| ! | ACGTAATTTAGTGTAATCAT+AGG | + | chr8.2:19107128-19107147 | MS.gene60342:intron | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | + | chr8.2:19107261-19107280 | MS.gene60342:intron | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | + | chr8.2:19106575-19106594 | MS.gene60342:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | - | chr8.2:19107261-19107280 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | + | chr8.2:19104933-19104952 | MS.gene60342:CDS | 25.0% |
| ! | CTGTTACTCAGATATAATAT+GGG | - | chr8.2:19106980-19106999 | None:intergenic | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | + | chr8.2:19107262-19107281 | MS.gene60342:intron | 25.0% |
| ! | GTAACTAGTAATAATGTAAC+AGG | + | chr8.2:19106369-19106388 | MS.gene60342:intron | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | + | chr8.2:19106238-19106257 | MS.gene60342:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | + | chr8.2:19107444-19107463 | MS.gene60342:CDS | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | - | chr8.2:19106580-19106599 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | - | chr8.2:19106914-19106933 | None:intergenic | 25.0% |
| ! | TAGTATGTCAGAAAAAAAGA+TGG | - | chr8.2:19106684-19106703 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | - | chr8.2:19107103-19107122 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | + | chr8.2:19106048-19106067 | MS.gene60342:CDS | 25.0% |
| !! | TATAGTTCTGTTTCAATGTT+TGG | - | chr8.2:19106829-19106848 | None:intergenic | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | - | chr8.2:19106090-19106109 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | - | chr8.2:19106534-19106553 | None:intergenic | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | - | chr8.2:19106533-19106552 | None:intergenic | 25.0% |
| !!! | TCCTATGTTTTTTACATTAG+TGG | + | chr8.2:19105866-19105885 | MS.gene60342:intron | 25.0% |
| ACATGTCATACGAATGTTAT+AGG | - | chr8.2:19105461-19105480 | None:intergenic | 30.0% | |
| ACCACAAATTGTCCAATATA+TGG | + | chr8.2:19107024-19107043 | MS.gene60342:intron | 30.0% | |
| ACCATATATTGGACAATTTG+TGG | - | chr8.2:19107028-19107047 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | - | chr8.2:19106346-19106365 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | - | chr8.2:19106348-19106367 | None:intergenic | 30.0% | |
| ATATATTGGACAATTTGTGG+TGG | - | chr8.2:19107025-19107044 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | + | chr8.2:19106886-19106905 | MS.gene60342:intron | 30.0% | |
| CAATAAAGATGAGAAGGATA+AGG | - | chr8.2:19106655-19106674 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | + | chr8.2:19104932-19104951 | MS.gene60342:CDS | 30.0% | |
| CCATATTATATCTGAGTAAC+AGG | + | chr8.2:19106978-19106997 | MS.gene60342:intron | 30.0% | |
| CCTGTTACTCAGATATAATA+TGG | - | chr8.2:19106981-19107000 | None:intergenic | 30.0% | |
| CTTGTTCAACCTTATCAAAT+TGG | - | chr8.2:19107456-19107475 | None:intergenic | 30.0% | |
| GAACAATCCCAATGAATATA+TGG | - | chr8.2:19107272-19107291 | None:intergenic | 30.0% | |
| GAACGATTTGAACCATATAT+TGG | - | chr8.2:19107039-19107058 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | - | chr8.2:19106347-19106366 | None:intergenic | 30.0% | |
| GTGTATCTTCACATGTATAA+AGG | - | chr8.2:19106775-19106794 | None:intergenic | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | + | chr8.2:19105652-19105671 | MS.gene60342:intron | 30.0% | |
| TATATATATGTGTCGAACAC+CGG | - | chr8.2:19105540-19105559 | None:intergenic | 30.0% | |
| TTAAGCAATAACCATGTAGT+AGG | - | chr8.2:19106158-19106177 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | + | chr8.2:19105651-19105670 | MS.gene60342:intron | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | + | chr8.2:19105068-19105087 | MS.gene60342:intron | 30.0% | |
| ! | CTTCATATCTGGAATATGAT+AGG | + | chr8.2:19107213-19107232 | MS.gene60342:intron | 30.0% |
| ! | GAGTAACTATTGTTCTTTTG+AGG | + | chr8.2:19106047-19106066 | MS.gene60342:CDS | 30.0% |
| ! | TACGAATGTTATAGGAGTAT+TGG | - | chr8.2:19105453-19105472 | None:intergenic | 30.0% |
| ! | TATGGTGATGTCTACAATAA+AGG | - | chr8.2:19107402-19107421 | None:intergenic | 30.0% |
| ! | TGCACTTATAACCACTATTT+TGG | + | chr8.2:19105162-19105181 | MS.gene60342:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | - | chr8.2:19106552-19106571 | None:intergenic | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | + | chr8.2:19106120-19106139 | MS.gene60342:CDS | 30.0% |
| !! | TTCTGAAATACTATGAAGCA+CGG | + | chr8.2:19107056-19107075 | MS.gene60342:intron | 30.0% |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | + | chr8.2:19106406-19106425 | MS.gene60342:CDS | 30.0% |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | + | chr8.2:19107279-19107298 | MS.gene60342:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | + | chr8.2:19106544-19106563 | MS.gene60342:intron | 30.0% |
| AAAAATTTGCAGGTGCCTAA+TGG | - | chr8.2:19106904-19106923 | None:intergenic | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | + | chr8.2:19106459-19106478 | MS.gene60342:CDS | 35.0% | |
| AATCAGTCCATCAAACTATG+TGG | + | chr8.2:19107363-19107382 | MS.gene60342:CDS | 35.0% | |
| ACTCAGATCTTCAAACAGAA+GGG | + | chr8.2:19107421-19107440 | MS.gene60342:CDS | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | + | chr8.2:19106279-19106298 | MS.gene60342:CDS | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | - | chr8.2:19106724-19106743 | None:intergenic | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | + | chr8.2:19105397-19105416 | MS.gene60342:intron | 35.0% | |
| GAATAATAGCTCCTACTACA+TGG | + | chr8.2:19106144-19106163 | MS.gene60342:intron | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | - | chr8.2:19105176-19105195 | None:intergenic | 35.0% | |
| GCATAAGGAAAAGAGGATTA+AGG | - | chr8.2:19106016-19106035 | None:intergenic | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | + | chr8.2:19106427-19106446 | MS.gene60342:CDS | 35.0% | |
| TACTCAGATCTTCAAACAGA+AGG | + | chr8.2:19107420-19107439 | MS.gene60342:CDS | 35.0% | |
| TACTTTGACACTTCTTGAAC+CGG | + | chr8.2:19105518-19105537 | MS.gene60342:intron | 35.0% | |
| TCTGTTTGAAGATCTGAGTA+TGG | - | chr8.2:19107420-19107439 | None:intergenic | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | + | chr8.2:19104936-19104955 | MS.gene60342:CDS | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | + | chr8.2:19106017-19106036 | MS.gene60342:intron | 35.0% |
| ! | ACTTTTGAATCTACTGTGTG+TGG | - | chr8.2:19105621-19105640 | None:intergenic | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | + | chr8.2:19106096-19106115 | MS.gene60342:CDS | 35.0% |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | + | chr8.2:19107292-19107311 | MS.gene60342:intron | 35.0% |
| AAGTTGTCTCTTACGAAGCA+CGG | - | chr8.2:19105939-19105958 | None:intergenic | 40.0% | |
| ACAGGTCGAAGCATATAACA+AGG | + | chr8.2:19106387-19106406 | MS.gene60342:intron | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | + | chr8.2:19107202-19107221 | MS.gene60342:intron | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | - | chr8.2:19107200-19107219 | None:intergenic | 40.0% | |
| TCATGTGCCACATAGTTTGA+TGG | - | chr8.2:19107373-19107392 | None:intergenic | 40.0% | |
| TGTTGATCAACGAAGGGTTA+TGG | + | chr8.2:19105658-19105677 | MS.gene60342:intron | 40.0% | |
| ! | CTTACCATAAGACTTGCTTC+AGG | + | chr8.2:19107320-19107339 | MS.gene60342:CDS | 40.0% |
| !! | CTTTAAGATGACTGGCAGTT+TGG | + | chr8.2:19106104-19106123 | MS.gene60342:CDS | 40.0% |
| ATACTATGAAGCACGGTCAC+CGG | + | chr8.2:19107063-19107082 | MS.gene60342:intron | 45.0% | |
| ATTTGTGGTGGTATGAGCTG+TGG | - | chr8.2:19107013-19107032 | None:intergenic | 45.0% | |
| GCACCAAGCATAAGGAAAAG+AGG | - | chr8.2:19106023-19106042 | None:intergenic | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | - | chr8.2:19107327-19107346 | None:intergenic | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | + | chr8.2:19105000-19105019 | MS.gene60342:CDS | 45.0% | |
| ! | GTCTAGAATTAGGTGTGTCG+CGG | + | chr8.2:19105424-19105443 | MS.gene60342:intron | 45.0% |
| ACTCAGCTGCACCAAGCATA+AGG | - | chr8.2:19106031-19106050 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | + | chr8.2:19107331-19107350 | MS.gene60342:CDS | 50.0% | |
| ATTCGTGTCAGTGTCGTGTC+AGG | + | chr8.2:19105898-19105917 | MS.gene60342:intron | 50.0% | |
| CTTCAGATGCCACCATTGCA+AGG | + | chr8.2:19104999-19105018 | MS.gene60342:CDS | 50.0% | |
| GCAAGAACACTCCTCGGATT+AGG | - | chr8.2:19107194-19107213 | None:intergenic | 50.0% | |
| ! | GCACGGACACGTCTAGAATT+AGG | + | chr8.2:19105414-19105433 | MS.gene60342:intron | 50.0% |
| ! | GGCATCTGAAGCAAGACTTG+TGG | - | chr8.2:19104990-19105009 | None:intergenic | 50.0% |
| ACACGACACAGACACCGACA+CGG | + | chr8.2:19107086-19107105 | MS.gene60342:intron | 55.0% | |
| CCTTGAGTGTGCCCTTGCAA+TGG | - | chr8.2:19105014-19105033 | None:intergenic | 55.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | - | chr8.2:19105011-19105030 | None:intergenic | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | + | chr8.2:19107334-19107353 | MS.gene60342:CDS | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | + | chr8.2:19105011-19105030 | MS.gene60342:CDS | 55.0% |
| GGATTAGGCGTGTCCGGTGT+CGG | - | chr8.2:19107179-19107198 | None:intergenic | 60.0% | |
| ! | CTCCTCGGATTAGGCGTGTC+CGG | - | chr8.2:19107185-19107204 | None:intergenic | 60.0% |
| ! | GTCGGTGTCTGTGTCGTGTC+CGG | - | chr8.2:19107085-19107104 | None:intergenic | 60.0% |
| CACCGGACACGCCTAATCCG+AGG | + | chr8.2:19107180-19107199 | MS.gene60342:intron | 65.0% | |
| CAGCGACGCGTATCCGACAC+CGG | + | chr8.2:19107163-19107182 | MS.gene60342:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 19104895 | 19107480 | 19104895 | ID=MS.gene60342 |
| chr8.2 | mRNA | 19104895 | 19107480 | 19104895 | ID=MS.gene60342.t1;Parent=MS.gene60342 |
| chr8.2 | exon | 19104895 | 19105032 | 19104895 | ID=MS.gene60342.t1.exon1;Parent=MS.gene60342.t1 |
| chr8.2 | CDS | 19104895 | 19105032 | 19104895 | ID=cds.MS.gene60342.t1;Parent=MS.gene60342.t1 |
| chr8.2 | exon | 19106045 | 19106141 | 19106045 | ID=MS.gene60342.t1.exon2;Parent=MS.gene60342.t1 |
| chr8.2 | CDS | 19106045 | 19106141 | 19106045 | ID=cds.MS.gene60342.t1;Parent=MS.gene60342.t1 |
| chr8.2 | exon | 19106260 | 19106300 | 19106260 | ID=MS.gene60342.t1.exon3;Parent=MS.gene60342.t1 |
| chr8.2 | CDS | 19106260 | 19106300 | 19106260 | ID=cds.MS.gene60342.t1;Parent=MS.gene60342.t1 |
| chr8.2 | exon | 19106391 | 19106480 | 19106391 | ID=MS.gene60342.t1.exon4;Parent=MS.gene60342.t1 |
| chr8.2 | CDS | 19106391 | 19106480 | 19106391 | ID=cds.MS.gene60342.t1;Parent=MS.gene60342.t1 |
| chr8.2 | exon | 19107301 | 19107480 | 19107301 | ID=MS.gene60342.t1.exon5;Parent=MS.gene60342.t1 |
| chr8.2 | CDS | 19107301 | 19107480 | 19107301 | ID=cds.MS.gene60342.t1;Parent=MS.gene60342.t1 |
| Gene Sequence |
| Protein sequence |
