AlfalfaGEDB | MS.gene60371

M. sativa cultivar XinJiangDaYe / MS.gene60371

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1901363
PFAM: PF00072.27 PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60371.t1	KEH31558.1	95	582	17	2	6	586	24	594	0.00E+00	1109.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60371.t1	Q6LA43	50.4	585	213	20	22	583	1	531	4.4e-117	423.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60371.t1	A0A072UR72	95.0	582	17	2	6	586	24	594	0.0e+00	1109.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene60371.t1	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60371.t1	MTR_4g098870	95.361	582	15	2	6	586	5	575	0.0	1145
MS.gene60371.t1	MTR_4g098870	95.043	585	17	2	3	586	21	594	0.0	1144
MS.gene60371.t1	MTR_4g098870	95.230	566	15	2	22	586	1	555	0.0	1113
MS.gene60371.t1	MTR_4g098870	94.896	529	15	2	6	533	5	522	0.0	1041
MS.gene60371.t1	MTR_4g098870	94.737	513	15	2	22	533	1	502	0.0	1010
MS.gene60371.t1	MTR_5g014040	67.979	559	144	9	22	573	1	531	0.0	731
MS.gene60371.t1	MTR_5g014040	67.376	564	144	10	22	573	1	536	0.0	725
MS.gene60371.t1	MTR_5g014040	65.709	522	139	10	64	573	3	496	0.0	647
MS.gene60371.t1	MTR_4g078810	38.545	275	127	10	339	579	155	421	2.55e-44	163
MS.gene60371.t1	MTR_2g090675	31.000	400	200	13	226	579	53	422	5.78e-43	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60371.t1	AT4G18020	49.244	595	205	22	22	583	1	531	6.87e-144	427
MS.gene60371.t1	AT4G18020	49.244	595	205	22	22	583	1	531	6.87e-144	427
MS.gene60371.t1	AT4G18020	49.244	595	205	22	22	583	1	531	6.87e-144	427
MS.gene60371.t1	AT4G18020	49.244	595	205	22	22	583	1	531	6.87e-144	427
MS.gene60371.t1	AT4G18020	49.244	595	205	22	22	583	1	531	6.87e-144	427
MS.gene60371.t1	AT4G18020	47.901	524	184	19	22	519	1	461	9.84e-132	394
MS.gene60371.t1	AT4G18020	47.901	524	184	19	22	519	1	461	9.84e-132	394
MS.gene60371.t1	AT4G18020	47.901	524	184	19	22	519	1	461	9.84e-132	394
MS.gene60371.t1	AT4G18020	47.901	524	184	19	22	519	1	461	9.84e-132	394
MS.gene60371.t1	AT4G18020	47.901	524	184	19	22	519	1	461	9.84e-132	394

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Find 166 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGCTGGCATGCAGGTT+TGG	0.279169	8.1:+23753404	MS.gene60371:CDS
AAAGAAAGTGGGGAACATGA+TGG	0.554765	8.1:+23752495	MS.gene60371:CDS
AAAGGATGCTAAGCCAGCTA+TGG	0.586494	8.1:+23750080	MS.gene60371:CDS
AACACACTATCCGTGGAAGG+AGG	0.682497	8.1:-23754555	None:intergenic
AACCCCACAATTGAAACAGG+TGG	0.572926	8.1:+23752386	MS.gene60371:CDS
AACGAAATCTGAAGCTACTT+TGG	0.427503	8.1:+23752578	MS.gene60371:CDS
AACGGCTGGCATGCAGGTTT+GGG	0.205753	8.1:+23753405	MS.gene60371:CDS
AACTCAAACGGCTGGCATGC+AGG	0.455168	8.1:+23753399	MS.gene60371:CDS
AAGAACAAAGCTTGAGGCCA+TGG	0.479516	8.1:+23750197	MS.gene60371:CDS
AAGGAGCAGGATAATGTTCA+TGG	0.465809	8.1:-23752362	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGATGAATGGTGTAGA+GGG	+	chr8.1:23751623-23751642	MS.gene60371:intron	30.0%
ACAACATCTGCAAATAAAGT+AGG	+	chr8.1:23752702-23752721	MS.gene60371:CDS	30.0%
ACATAAACAACCTTTCTCTT+TGG	+	chr8.1:23753533-23753552	MS.gene60371:intron	30.0%
ACCAAATGTTTGTATAGTAG+GGG	+	chr8.1:23754327-23754346	MS.gene60371:intron	30.0%
AGACAAAGTGAAGTATAGAA+AGG	+	chr8.1:23749965-23749984	MS.gene60371:intron	30.0%
AGCATTATGAGAAGAATGAA+TGG	-	chr8.1:23752790-23752809	None:intergenic	30.0%
AGGTAATGCATACTAACATA+AGG	+	chr8.1:23753166-23753185	MS.gene60371:intron	30.0%
ATGGTCCATATTTCCATATA+TGG	+	chr8.1:23750709-23750728	MS.gene60371:intron	30.0%
ATGTTAAGATTAAATGCGTG+TGG	-	chr8.1:23752146-23752165	None:intergenic	30.0%
ATTAGATCCAATATTCGAGA+AGG	-	chr8.1:23753007-23753026	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	23749896	23754644	23749896	ID=MS.gene60371
chr8.1	mRNA	23749896	23754644	23749896	ID=MS.gene60371.t1;Parent=MS.gene60371
chr8.1	exon	23749896	23749910	23749896	ID=MS.gene60371.t1.exon1;Parent=MS.gene60371.t1
chr8.1	CDS	23749896	23749910	23749896	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23750051	23750228	23750051	ID=MS.gene60371.t1.exon2;Parent=MS.gene60371.t1
chr8.1	CDS	23750051	23750228	23750051	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23751108	23751187	23751108	ID=MS.gene60371.t1.exon3;Parent=MS.gene60371.t1
chr8.1	CDS	23751108	23751187	23751108	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23751387	23751453	23751387	ID=MS.gene60371.t1.exon4;Parent=MS.gene60371.t1
chr8.1	CDS	23751387	23751453	23751387	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23751746	23751792	23751746	ID=MS.gene60371.t1.exon5;Parent=MS.gene60371.t1
chr8.1	CDS	23751746	23751792	23751746	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23752040	23752117	23752040	ID=MS.gene60371.t1.exon6;Parent=MS.gene60371.t1
chr8.1	CDS	23752040	23752117	23752040	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23752207	23752773	23752207	ID=MS.gene60371.t1.exon7;Parent=MS.gene60371.t1
chr8.1	CDS	23752207	23752773	23752207	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23752932	23753072	23752932	ID=MS.gene60371.t1.exon8;Parent=MS.gene60371.t1
chr8.1	CDS	23752932	23753072	23752932	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23753214	23753489	23753214	ID=MS.gene60371.t1.exon9;Parent=MS.gene60371.t1
chr8.1	CDS	23753214	23753489	23753214	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23753611	23753679	23753611	ID=MS.gene60371.t1.exon10;Parent=MS.gene60371.t1
chr8.1	CDS	23753611	23753679	23753611	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23753851	23753928	23753851	ID=MS.gene60371.t1.exon11;Parent=MS.gene60371.t1
chr8.1	CDS	23753851	23753928	23753851	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1
chr8.1	exon	23754480	23754644	23754480	ID=MS.gene60371.t1.exon12;Parent=MS.gene60371.t1
chr8.1	CDS	23754480	23754644	23754480	ID=cds.MS.gene60371.t1;Parent=MS.gene60371.t1

Gene Sequence

>MS.gene60371

ATGCCACTTTATACTGTGAGTCTGTGACTAGTATCTGCTAGCTAGCTATTTGGAACTTTTTAAGCATTTAGACAAAGTGAAGTATAGAAAGGAGCTTTGATTAATTAAAGTCTAGTAGCTTACTGAATGAAGCTTGTGATGTCATGGTTTTGCAGAAGGAACTGGATGTTGATGAGAGTCTGAGAAAGGATGCTAAGCCAGCTATGGTTTGTACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCTTGAGGAAGACAGCACTTCTGTTTCCGAGATAAGAACAAAGCTTGAGGCCATGGACTATAATGGTAAGATACTTTTCAGATTCTTTCTTTTTGTTATAGCCTCTCTCACTTCTTCATCTACATAAATTTTGGTCTGCCAATTTGTACTATGGTTACTTTAGGGGGTGAAGTTTGTCTTAATATTTTTGTACGATGGCATCTTACAGAGCGTCATTGTTTTAGAATTATAGAACGTCTTTGCTTTAGAATCCTTGAATAGTAACCAAGTGGTTGAATTCAAGTGGTTAATGAGTTTTAGTTAAGGTTGAATCGTTTGGGAGAACCCAAATTCGAATCTTGACTGGAAAAATCCTTGGCCAAGTTTTACATATCCCTAGCCGAAGTCCAAATTACCAGAGTCCCCTTCCCCTATGAACCGAAGGGTTTAGACTTTAGACCAAAAAAAGGAATCCTTTTATAATTCTTTGTAAAACCGTGATCTCAGTATTTAGTTGCAATAGTTGCTATATATTTTGAAAGAATACATTTTCGCTGTGATTTTTTATGGTCCATATTTCCATATATGGTAATTCTTTACATGTCTTGTGAAAACATGTCTATGTTTTCATCTTTAAAGTATGTACCTTATGCGTTTTCACAACTGGATATGGTCCAAATTGTAATGATACTGAATTTGAATCTTTGATATTTTTGTAATTCGATCACTTTTTTACTGCTCGGTCACTACACTCGATATGAATTAGTTGGCAGCAGAGGACATGCATTTCTTATGGAGAACAAAAGTTTCTGCGAAAGCAAGTGAATTGAATATACTTGATTTTATTGAAATTCTCATAGTTCTTTTACTCTACTCTGTCTCCTGCATCTTCTCTGATTCAGCTTTTATGTACATGCTTGCCCTTTCTGTTAAGTTGTTTATTAATCCTTAAAGTTTCTATACAGTTTCGATATTCTGTGATGTGAATGAAGCCTTGTCAGCAGTCTCAAGTAGACCTGAAGATTTCCATATAGCCATAGTGGAGGTAAACTTTCATTTTCTATATAAATGACAAATCATAATGTAGTAAATTTGAAACTTAGATCTGTGTGGTTGTTGAAAATAAAATGAACATCTCTAAGGAGAGAAATGATGATATTGACTTGTTAACTGCTGCCAAATTTCGTATCTTTGTAAAGTGATACGGCTTTGATAATGTTATTATGCATCCATCCTAATTGTAGGTGAGTTCAAGCAGTTGTGAGGGAGGCTTCAAATTTCTTGAGAATGCCAAGGACTTACCAACCATCAGTAAGTACATAAACCAAACACAAATTTTCTGGTTTAAAGAATATAGATTAAATTAACTTCTGCATATTAAATAATATTGCAATAACTAATTTTATTTGACTTGTGATTGATGTTGTTTTATATCATGCAACATCTTATTTTTTTAGTAGCTTTTACCTATGGAAACTAGAAATTGATGAATGGTGTAGAGGGGGAACATGGCATGGAAAATACGGGGAAAATGTTGACATTAATGCTTTTTTGTGCTTGCTGCAAGTTTTATAACCAGTGAGTTCTTCAATTTTTGATGCAGTGACTTCAAATAGCGATTGTCTGAACACCATGATGAAGTGCATAGCGGTAAGATTTTGGTTATATTCTTTGAGCTAAATCCAATTTCCGTATATCGTTATTTCATGCTTTGGATTCTTTCCGATTGACCATATCCTTTTAAAATTAGAGGGCTAATCAAACTAGTTTTATTTGGTTTTTCAGTTCTACTTAAATAGGATCTTTAACTTAATAGACAAAGTGTATTTTCAATCCATTTTAATTGTTGATGCGCGCACACCTCTTTACTCTTTGCTGCTTCGTTTTCTTTTTTAAGCTTGGAGCAGTGGAGTTTCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATTTGGCAGCATGTGGTTCACAAGGTCTGTAAATAATATTCGTGATATTCCACACGCATTTAATCTTAACATATGCTGAGTAAAATAGTTCTTATGCGCTTTAACTCAAACAGGCGTTCAATGCTGGGGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGCCTCCATCTTGCAGATTCAAACAGATAACGAACAAAATGAAAGTAAAGCCTCAATCAAGTTAGAGCAAGTATTGAGGTCTTCTGACAATGACCACCATGAACATTATCCTGCTCCTTCAACCCCACAATTGAAACAGGTGGGAAGATTACTTGATGATGGGGATTGCCAAGAGCAGACTAATTGCTCCACGGAAAATTGCCAAGAGCAGACTAATTGCTCCACGGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAATTACATGTGAAAATTTGAATGCTGAAAGTATTACTCAACAAACGAAATCTGAAGCTACTTTGGTTCAGAAGGAAGAGGAGGAATTTGCCGACGCTTCTAAGTGTGAGAGTGTTGTTTCACCACAGTTACCAAATGTGAAGGTTCTAAACAATAGTGAAAGTAATACAACATCTGCAAATAAAGTAGGTGTTCGCAGTCATAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAAGCTGTTTTTCCATTCATTCTTCTCATAATGCTCTTGTTCCGTTATTTCAGACTGTTCATTGTTTATCCATGTTTTATAAGGTTATATTCATTTTATGTATGAATGATCTGCGGAACCTGATTTTCTTAATACAGTTTTGGTACTTTGGTCTCAGGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGGTTATAATCTACCTTCCCACGGTTTCCAAAAACTAATTCAATACCTCATTCAAAACTGTAATTAATGATAAATTGATATTCGTATATCTTCATAGGTAATGCATACTAACATAAGGTCTTTTATTGTTTAAATTCAACCAGAAATATAGAATGCATAAGAGACATATCTTACCGAAGCAGGATGATCGGAAATGGCTAAATCCAAGGGATCCAACTCAAAGGAACTATTGTCTTCAAAGACCAATTATGCCCGGTCCTCCATCATATTATTCTAACCATACCCTTCCTCCTCTAGCTCCTTTATATCCTATGTGGGGACAATCTGGAACTCAAACGGCTGGCATGCAGGTTTGGGGCCATTCTGGTTATCCCATGTGGCAGCCTACAGAAAGTTGGCATTGGAAACCATTTCCGGGGGTAATATATTTGTTCAGAATTCGAGAGTGTGAAGTTTTTGTTCACATAAACAACCTTTCTCTTTGGCTTGTTATGTAGAGATTATGGTTGCAGTTTGACATGTGATCACTTGATGTTGCAGATACATCCAGATGCATGGGGCTGCCCGGTGTTACCTCCACCTCAACCTCCTTGCTATTCCTACTCTCAGGTGAGTATCATAAAAATGAAGATTTTAACTTTATCCTTTTGCTATTTTCTGTGCTAATGGTTAATACCTGATAATGTAATTATGCCTGCACAATTTGTTTTTGCTAGTTATTTAAATTACTTATGGGTTATGCTAATCATATCTTTTTTTTTTTTTTTTATCAAACCACAGGATATACCTGCAGTGACTAACGCTAATGCAATGGATTACACGTTTAGCATACCACATAGTTCCTTTGACGATTATCCGGTAATGCAATGCTTTCCTTTCAGTTTCTTTCTACTTGATCATAGTAGCTACATGCAAGTAACCAGTTTATATATTCTGATTAGCACCATTTCATGTTGTGATGAAATCCTAGTCCTGCTTAAAAGCATTAAAAAGATTGAAAATCCGTAAAAAGTTCAGTGATTCAAACTCAATTTATTATGTTGCAACGAATAACTTAGTACATTGACATTGAGAAATTATATTTAACATGTTTTCTACCGAGCACGTGTCTTACAAATGCCGATTATCAAAATGCTTTATGTATCTTGTGTCGAATAAATATGATCAATGGTTTTAAGGGCTGAATATATCACATGGTTTTTCTAATTGAATAAATTTGTATGGGAATCAGGGCATAATTGAGTCTTCTCTAACTTACCAAATGTTTGTATAGTAGGGGCATGCAAATTAAGATAAAAACACGAGCACTAAAAATTGTTTTAGACGATGAAGCGTGTCTACCAAATCATCATTGTTTTATAGACTATCCATGAACTCTTACCATAGTGTTTTACAATGCATACATGCAGGCAGAGGAGGTTATTGACAATGTTGTGAAGGAGGCGATAAGTAAGCCATGGCTACCTTTGCCAATAGGCCTCAAACCTCCTTCCACGGATAGTGTGTTGGCTGAGCTTTCAAGACAAGGCATTTCCAGCATCCCTCCAAGCTACAATGGTTCTCTTCCCTATTGA

Protein sequence

>MS.gene60371.t1

MPLYTKELDVDESLRKDAKPAMVCTANDLQEWKDFPKGLKVLLLEEDSTSVSEIRTKLEAMDYNVSIFCDVNEALSAVSSRPEDFHIAIVEVSSSSCEGGFKFLENAKDLPTIMTSNSDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSALSESLKPVKESVASILQIQTDNEQNESKASIKLEQVLRSSDNDHHEHYPAPSTPQLKQVGRLLDDGDCQEQTNCSTENCQEQTNCSTEKESGEHDGESKSVEITCENLNAESITQQTKSEATLVQKEEEEFADASKCESVVSPQLPNVKVLNNSESNTTSANKVGVRSHKCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQDDRKWLNPRDPTQRNYCLQRPIMPGPPSYYSNHTLPPLAPLYPMWGQSGTQTAGMQVWGHSGYPMWQPTESWHWKPFPGIHPDAWGCPVLPPPQPPCYSYSQDIPAVTNANAMDYTFSIPHSSFDDYPAEEVIDNVVKEAISKPWLPLPIGLKPPSTDSVLAELSRQGISSIPPSYNGSLPY