AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60411

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60411.t1 MTR_4g097950 90.732 205 16 2 2 205 26 228 3.02e-118 336
MS.gene60411.t1 MTR_5g014600 54.412 204 83 4 6 205 116 313 8.78e-59 187
MS.gene60411.t1 MTR_2g010450 53.704 162 65 4 45 205 177 329 1.43e-46 157
MS.gene60411.t1 MTR_4g092700 56.790 162 59 4 45 205 158 309 3.68e-46 155
MS.gene60411.t1 MTR_5g014520 47.826 207 92 5 2 205 115 308 3.80e-46 155
MS.gene60411.t1 MTR_5g014560 45.763 177 87 3 29 205 115 282 5.01e-41 141
MS.gene60411.t1 MTR_4g009540 44.162 197 99 4 15 205 118 309 5.32e-41 141
MS.gene60411.t1 MTR_4g009540 44.162 197 99 4 15 205 118 309 9.81e-41 141
MS.gene60411.t1 MTR_0246s0020 46.392 194 94 5 14 205 168 353 2.69e-40 141
MS.gene60411.t1 MTR_0246s0020 46.392 194 94 5 14 205 168 353 3.39e-40 141
MS.gene60411.t1 MTR_0250s0040 44.706 170 83 3 37 205 80 239 4.09e-40 138
MS.gene60411.t1 MTR_6g047570 44.706 170 83 3 37 205 151 310 1.52e-37 133
MS.gene60411.t1 MTR_4g097940 46.061 165 70 4 45 205 155 304 5.91e-37 131
MS.gene60411.t1 MTR_0011s0210 46.296 162 76 3 45 205 183 334 1.73e-36 130
MS.gene60411.t1 MTR_0011s0260 46.914 162 75 3 45 205 183 334 3.26e-36 130
MS.gene60411.t1 MTR_4g067010 44.048 168 74 3 42 205 144 295 1.68e-35 127
MS.gene60411.t1 MTR_4g009110 44.444 162 82 3 45 205 174 328 2.54e-35 127
MS.gene60411.t1 MTR_4g066460 44.767 172 83 2 34 205 144 303 7.07e-35 125
MS.gene60411.t1 MTR_2g104550 42.000 200 101 6 8 205 104 290 2.04e-34 124
MS.gene60411.t1 MTR_4g097920 43.827 162 78 3 45 205 140 289 1.35e-33 122
MS.gene60411.t1 MTR_4g097920 43.827 162 78 3 45 205 155 304 2.03e-33 122
MS.gene60411.t1 MTR_2g104490 44.318 176 84 6 31 205 124 286 1.49e-32 119
MS.gene60411.t1 MTR_2g104490 44.318 176 84 6 31 205 124 286 1.81e-32 119
MS.gene60411.t1 MTR_0246s0050 40.984 183 89 3 24 205 131 295 7.33e-32 117
MS.gene60411.t1 MTR_4g098035 40.984 183 89 3 24 205 152 316 9.36e-32 118
MS.gene60411.t1 MTR_4g066380 43.529 170 83 2 36 205 144 300 2.92e-30 114
MS.gene60411.t1 MTR_8g009020 42.683 164 86 3 45 205 143 301 2.36e-29 111
MS.gene60411.t1 MTR_5g014640 38.202 178 98 1 28 205 137 302 2.57e-29 111
MS.gene60411.t1 MTR_2g104500 35.417 192 109 2 14 205 74 250 4.44e-29 109
MS.gene60411.t1 MTR_2g104560 39.394 165 79 4 46 205 55 203 6.79e-28 105
MS.gene60411.t1 MTR_2g104530 37.267 161 86 2 46 205 106 252 2.71e-25 99.8
MS.gene60411.t1 MTR_8g069740 38.415 164 92 3 43 205 110 265 6.26e-25 98.6
MS.gene60411.t1 MTR_6g047550 56.322 87 38 0 26 112 154 240 3.99e-24 96.7
MS.gene60411.t1 MTR_5g014550 44.275 131 64 2 75 205 54 175 4.74e-24 94.7
MS.gene60411.t1 MTR_7g080780 37.267 161 83 1 45 205 152 294 7.22e-24 96.7
MS.gene60411.t1 MTR_7g080780 37.267 161 83 1 45 205 165 307 9.75e-24 96.7
MS.gene60411.t1 MTR_8g064700 32.402 179 117 2 25 203 224 398 7.66e-23 95.1
MS.gene60411.t1 MTR_2g104590 38.037 163 74 5 43 205 67 202 1.09e-21 89.4
MS.gene60411.t1 MTR_2g104650 36.813 182 102 4 25 205 78 247 5.74e-20 85.5
MS.gene60411.t1 MTR_8g009010 35.185 162 59 2 45 205 134 250 7.72e-19 83.2
MS.gene60411.t1 MTR_8g067280 35.762 151 87 3 45 189 462 608 1.19e-16 78.2
MS.gene60411.t1 MTR_7g117670 54.237 59 27 0 45 103 402 460 5.78e-16 75.9
MS.gene60411.t1 MTR_8g027495 55.357 56 25 0 45 100 458 513 2.88e-15 73.9
MS.gene60411.t1 MTR_8g024790 35.507 138 77 4 30 165 276 403 3.11e-15 73.6
MS.gene60411.t1 MTR_7g096350 55.556 54 24 0 45 98 355 408 6.27e-15 72.8
MS.gene60411.t1 MTR_5g030430 42.045 88 42 1 11 98 468 546 1.03e-14 72.4
MS.gene60411.t1 MTR_8g024770 30.435 161 102 3 2 162 241 391 2.77e-14 70.9
MS.gene60411.t1 MTR_1g072320 46.032 63 34 0 45 107 470 532 7.08e-14 70.1
MS.gene60411.t1 MTR_3g030700 30.247 162 103 3 47 205 198 352 2.59e-13 67.8
MS.gene60411.t1 MTR_7g451650 34.058 138 72 4 68 205 57 175 2.73e-13 66.2
MS.gene60411.t1 MTR_7g451650 34.058 138 72 4 68 205 57 175 2.76e-13 65.9
MS.gene60411.t1 MTR_4g009510 31.288 163 90 4 44 205 42 183 5.05e-13 65.5
MS.gene60411.t1 MTR_3g498695 27.273 198 116 6 13 200 275 454 6.35e-13 67.0
MS.gene60411.t1 MTR_3g498695 27.273 198 116 6 13 200 275 454 6.54e-13 67.0
MS.gene60411.t1 MTR_4g009420 30.667 150 76 3 56 205 54 175 7.74e-13 64.7
MS.gene60411.t1 MTR_4g009420 31.159 138 68 2 68 205 65 175 7.82e-13 65.1
MS.gene60411.t1 MTR_2g081040 30.435 161 99 4 47 200 179 333 1.39e-12 65.9
MS.gene60411.t1 MTR_2g084280 31.111 135 81 2 47 181 135 257 1.53e-12 65.5
MS.gene60411.t1 MTR_7g083900 27.673 159 108 3 47 200 288 444 2.03e-12 65.5
MS.gene60411.t1 MTR_7g083900 27.673 159 108 3 47 200 288 444 2.13e-12 65.5
MS.gene60411.t1 MTR_3g104100 27.950 161 103 3 47 200 197 351 2.80e-12 65.1
MS.gene60411.t1 MTR_7g050350 33.333 132 69 4 74 205 1 113 4.52e-12 61.2
MS.gene60411.t1 MTR_7g451650 33.333 132 69 4 74 205 1 113 4.52e-12 61.2
MS.gene60411.t1 MTR_1g080890 34.951 103 60 1 43 145 201 296 1.54e-11 62.8
MS.gene60411.t1 MTR_4g131160 34.228 149 79 5 43 186 204 338 2.68e-11 62.0
MS.gene60411.t1 MTR_1g112680 44.068 59 33 0 47 105 319 377 2.68e-11 62.4
MS.gene60411.t1 MTR_4g131160 34.228 149 79 5 43 186 207 341 2.93e-11 62.0
MS.gene60411.t1 MTR_4g057270 26.250 160 102 4 47 202 151 298 3.12e-11 61.6
MS.gene60411.t1 MTR_2g038040 28.144 167 106 5 46 203 53 214 4.04e-11 60.8
MS.gene60411.t1 MTR_7g110810 53.846 52 24 0 46 97 213 264 8.70e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60411.t1 AT4G37850 53.416 161 67 3 45 205 152 304 1.06e-45 154
MS.gene60411.t1 AT4G37850 53.416 161 67 3 45 205 152 304 1.06e-45 154
MS.gene60411.t1 AT2G22750 51.705 176 79 4 30 205 112 281 7.90e-38 133
MS.gene60411.t1 AT2G22750 51.705 176 79 4 30 205 112 281 8.08e-38 133
MS.gene60411.t1 AT2G22750 51.705 176 79 4 30 205 140 309 1.23e-37 133
MS.gene60411.t1 AT2G22750 51.705 176 79 4 30 205 136 305 1.40e-37 133
MS.gene60411.t1 AT2G22750 51.705 176 79 4 30 205 140 309 1.46e-37 133
MS.gene60411.t1 AT2G22760 40.556 180 93 4 33 205 101 273 3.76e-34 123
MS.gene60411.t1 AT2G22760 40.556 180 93 4 33 205 101 273 3.86e-34 123
MS.gene60411.t1 AT2G22770 38.596 171 99 2 41 205 128 298 5.54e-30 113
MS.gene60411.t1 AT2G46510 58.929 56 23 0 45 100 395 450 1.30e-17 80.9
MS.gene60411.t1 AT5G46760 34.437 151 82 4 45 189 415 554 6.02e-17 79.0
MS.gene60411.t1 AT1G01260 29.310 174 77 4 18 188 415 545 1.11e-15 75.1
MS.gene60411.t1 AT1G01260 29.310 174 77 4 18 188 415 545 1.11e-15 75.1
MS.gene60411.t1 AT1G01260 29.310 174 77 4 18 188 415 545 1.11e-15 75.1
MS.gene60411.t1 AT4G29930 29.231 195 114 6 27 205 39 225 2.54e-15 72.8
MS.gene60411.t1 AT4G29930 29.231 195 114 6 27 205 39 225 2.54e-15 72.8
MS.gene60411.t1 AT4G29930 29.231 195 114 6 27 205 39 225 2.99e-15 72.4
MS.gene60411.t1 AT2G16910 29.193 161 101 3 46 193 315 475 4.19e-15 73.6
MS.gene60411.t1 AT1G32640 62.000 50 19 0 45 94 452 501 9.93e-15 72.4
MS.gene60411.t1 AT4G17880 32.468 154 77 3 45 189 416 551 2.41e-14 71.2
MS.gene60411.t1 AT5G58010 34.459 148 80 4 43 186 107 241 3.23e-14 70.1
MS.gene60411.t1 AT4G16430 35.165 91 50 1 8 98 292 373 1.21e-13 69.3
MS.gene60411.t1 AT1G12860 30.000 160 99 3 46 200 268 419 4.14e-13 67.4
MS.gene60411.t1 AT4G29930 29.508 183 100 7 27 205 39 196 4.19e-13 66.2
MS.gene60411.t1 AT1G12860 30.189 159 98 3 47 200 269 419 4.53e-13 67.4
MS.gene60411.t1 AT4G29930 27.473 182 108 5 27 205 39 199 4.56e-13 65.9
MS.gene60411.t1 AT4G29930 29.508 183 100 7 27 205 39 196 5.16e-13 65.9
MS.gene60411.t1 AT4G09820 27.536 138 71 2 46 183 364 472 8.02e-13 67.0
MS.gene60411.t1 AT5G57150 28.659 164 110 4 46 203 56 218 1.04e-12 65.1
MS.gene60411.t1 AT5G57150 28.261 184 116 5 34 202 35 217 1.18e-12 64.7
MS.gene60411.t1 AT5G57150 28.655 171 109 4 34 192 35 204 1.98e-12 64.7
MS.gene60411.t1 AT5G57150 28.655 171 109 4 34 192 34 203 2.12e-12 63.9
MS.gene60411.t1 AT5G57150 30.000 150 101 3 46 192 55 203 2.81e-12 63.9
MS.gene60411.t1 AT2G24260 43.299 97 44 2 43 131 43 136 8.67e-12 62.8
MS.gene60411.t1 AT4G29930 34.737 95 60 1 47 141 56 148 9.95e-12 61.6
MS.gene60411.t1 AT5G46830 50.000 54 27 0 45 98 343 396 1.00e-11 63.5
MS.gene60411.t1 AT2G28160 28.125 160 80 4 47 192 133 271 1.87e-11 62.4
MS.gene60411.t1 AT2G28160 28.125 160 80 4 47 192 133 271 1.96e-11 62.4
MS.gene60411.t1 AT1G63650 27.322 183 122 5 29 202 390 570 2.31e-11 62.8
MS.gene60411.t1 AT1G63650 27.322 183 122 5 29 202 390 570 2.31e-11 62.8
MS.gene60411.t1 AT1G63650 27.322 183 122 5 29 202 390 570 2.31e-11 62.8
MS.gene60411.t1 AT4G00870 33.000 100 65 1 5 102 207 306 2.48e-11 62.4
MS.gene60411.t1 AT2G24260 43.299 97 44 2 43 131 146 239 2.91e-11 62.0
MS.gene60411.t1 AT5G41315 27.586 174 111 3 43 202 447 619 5.67e-11 61.6
MS.gene60411.t1 AT5G41315 27.586 174 111 3 43 202 439 611 5.93e-11 61.6
MS.gene60411.t1 AT5G41315 27.586 174 111 3 43 202 444 616 5.94e-11 61.6

Find 45 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTGGTTCCACTGCTT+TGG 0.281497 8.2:-24160602 MS.gene60411:CDS
ATATAATTGCTGAGAGAATA+AGG 0.332685 8.2:-24161432 MS.gene60411:CDS
CCTTATTCCAAACCTCAAAA+AGG 0.354140 8.2:-24161371 MS.gene60411:intron
CGGGGAAGAATGTGCTGATT+AGG 0.377824 8.2:-24160714 MS.gene60411:CDS
GAAGTTAAAGCTAGTTTGTC+GGG 0.404928 8.2:-24160733 MS.gene60411:CDS
AATTTCTTCACAACCGTAAC+CGG 0.405974 8.2:+24160853 None:intergenic
AATAGAGAAACTTGGTCTCT+TGG 0.416449 8.2:-24160644 MS.gene60411:CDS
AAGGTTGGTACAACCTTCAT+TGG 0.432513 8.2:+24161571 None:intergenic
ATTCTTTGAGTTCACAACTT+TGG 0.438205 8.2:+24161537 None:intergenic
GACAAACTAGCTTTAACTTC+AGG 0.442233 8.2:+24160736 None:intergenic
GTCTGCGGATGTCAATGTTT+CGG 0.442533 8.2:-24160821 MS.gene60411:CDS
CAAAAGCAAAAGTGTAGAAC+CGG 0.446629 8.2:-24160872 MS.gene60411:CDS
ATGGACAAGGCCTCAGTGTT+GGG 0.461686 8.2:-24160955 MS.gene60411:CDS
GTTTCCATTACATGAATTTG+AGG 0.464190 8.2:+24160792 None:intergenic
CTCTCAGCAATTATATGATC+CGG 0.466944 8.2:+24161439 None:intergenic
AAAGTATGTGAAGGAGCTTA+AGG 0.470002 8.2:-24160923 MS.gene60411:CDS
CAAAAGTGTAGAACCGGTTA+CGG 0.471591 8.2:-24160866 MS.gene60411:CDS
ACTTCCTCAAATTCATGTAA+TGG 0.472899 8.2:-24160796 MS.gene60411:CDS
GGCCATAACCATCATTGCTC+AGG 0.477071 8.2:-24160581 None:intergenic
AAAATGTACCTGAGCAATGA+TGG 0.489397 8.2:+24160573 None:intergenic
GGAACCAAATGAAAAGGAAC+TGG 0.494621 8.2:+24160612 None:intergenic
AAAGTTGTGAACTCAAAGAA+TGG 0.494937 8.2:-24161535 MS.gene60411:CDS
TGTGTGATGAGTTGTAGATT+TGG 0.498172 8.2:+24161462 None:intergenic
AGCAGTGGAACCAAATGAAA+AGG 0.516842 8.2:+24160606 None:intergenic
TGAGAAAGATAAGGCAGTGA+TGG 0.525707 8.2:-24160683 MS.gene60411:CDS
TAAGGAACAAGTAAAACTGT+TGG 0.530262 8.2:-24160905 MS.gene60411:CDS
CTGAAAGAGCTATGAACTGT+TGG 0.532934 8.2:+24161395 None:intergenic
TGAAGTTAAAGCTAGTTTGT+CGG 0.533689 8.2:-24160734 MS.gene60411:CDS
GAGAAAGATAAGGCAGTGAT+GGG 0.538793 8.2:-24160682 MS.gene60411:CDS
GGAACAAGTAAAACTGTTGG+AGG 0.550452 8.2:-24160902 MS.gene60411:CDS
TATAGAGAAATAGAGAAACT+TGG 0.574558 8.2:-24160652 MS.gene60411:CDS
TACCTGAGCAATGATGGTTA+TGG 0.585304 8.2:+24160579 None:intergenic
GATGGACAAGGCCTCAGTGT+TGG 0.588121 8.2:-24160956 MS.gene60411:CDS
GATCCTCTGTGAGAAAGATA+AGG 0.589750 8.2:-24160692 MS.gene60411:CDS
GATGGTTATGGCCAAAGCAG+TGG 0.589928 8.2:+24160591 None:intergenic
CAGGAGAGCAACAAGAAGAA+CGG 0.634139 8.2:-24161493 MS.gene60411:CDS
AAGTTAAAGCTAGTTTGTCG+GGG 0.643559 8.2:-24160732 MS.gene60411:CDS
GAAATTGTCTGAACTGTCTG+CGG 0.654800 8.2:-24160836 MS.gene60411:CDS
TGAAGGTTGTACCAACCTTG+AGG 0.663007 8.2:-24161567 MS.gene60411:CDS
CATATGTTTGTAGATGGACA+AGG 0.664887 8.2:-24160968 MS.gene60411:intron
AGAAAGATAAGGCAGTGATG+GGG 0.666003 8.2:-24160681 MS.gene60411:CDS
ATCTACAACTCATCACACAC+CGG 0.675276 8.2:-24161458 MS.gene60411:CDS
CTGCCTTATCTTTCTCACAG+AGG 0.691029 8.2:+24160689 None:intergenic
TGATGCTATAAAGTATGTGA+AGG 0.702262 8.2:-24160932 MS.gene60411:CDS
TATAGCATCACCCAACACTG+AGG 0.742341 8.2:+24160945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATATAATTGCTGAGAGAATA+AGG - chr8.2:24160718-24160737 MS.gene60411:CDS 25.0%
! TATAGAGAAATAGAGAAACT+TGG - chr8.2:24161498-24161517 MS.gene60411:CDS 25.0%
!! TTGAAAAATGAACCTTTTTG+AGG + chr8.2:24160794-24160813 None:intergenic 25.0%
AAAGTTGTGAACTCAAAGAA+TGG - chr8.2:24160615-24160634 MS.gene60411:CDS 30.0%
ACACATGATTGATTGTGATT+TGG - chr8.2:24161065-24161084 MS.gene60411:intron 30.0%
ACTTCCTCAAATTCATGTAA+TGG - chr8.2:24161354-24161373 MS.gene60411:intron 30.0%
GATTGATTGCGATTTATTGA+CGG - chr8.2:24161125-24161144 MS.gene60411:intron 30.0%
GTTTCCATTACATGAATTTG+AGG + chr8.2:24161361-24161380 None:intergenic 30.0%
TAAGGAACAAGTAAAACTGT+TGG - chr8.2:24161245-24161264 MS.gene60411:intron 30.0%
TGATGCTATAAAGTATGTGA+AGG - chr8.2:24161218-24161237 MS.gene60411:intron 30.0%
! ATTCTTTGAGTTCACAACTT+TGG + chr8.2:24160616-24160635 None:intergenic 30.0%
! TGAAGTTAAAGCTAGTTTGT+CGG - chr8.2:24161416-24161435 MS.gene60411:CDS 30.0%
! TTTTTAGATTGTGCGTCAAT+CGG - chr8.2:24160941-24160960 MS.gene60411:CDS 30.0%
!! GACTCGAACTATATTTTTGT+GGG - chr8.2:24160827-24160846 MS.gene60411:CDS 30.0%
!! TGACTCGAACTATATTTTTG+TGG - chr8.2:24160826-24160845 MS.gene60411:CDS 30.0%
!!! AAATGAACCTTTTTGAGGTT+TGG + chr8.2:24160789-24160808 None:intergenic 30.0%
!!! CTTTTTGAGGTTTGGAATAA+GGG + chr8.2:24160781-24160800 None:intergenic 30.0%
AAAGTATGTGAAGGAGCTTA+AGG - chr8.2:24161227-24161246 MS.gene60411:intron 35.0%
AATAGAGAAACTTGGTCTCT+TGG - chr8.2:24161506-24161525 MS.gene60411:CDS 35.0%
AATTTCTTCACAACCGTAAC+CGG + chr8.2:24161300-24161319 None:intergenic 35.0%
ACCAAGACGTGTAAAAAATC+AGG - chr8.2:24160638-24160657 MS.gene60411:CDS 35.0%
CATATGTTTGTAGATGGACA+AGG - chr8.2:24161182-24161201 MS.gene60411:intron 35.0%
CCTTATTCCAAACCTCAAAA+AGG - chr8.2:24160779-24160798 MS.gene60411:CDS 35.0%
CTCTCAGCAATTATATGATC+CGG + chr8.2:24160714-24160733 None:intergenic 35.0%
CTTGTCCATCTACAAACATA+TGG + chr8.2:24161184-24161203 None:intergenic 35.0%
GTACTCCATATGTTTGTAGA+TGG - chr8.2:24161176-24161195 MS.gene60411:intron 35.0%
TGTGTGATGAGTTGTAGATT+TGG + chr8.2:24160691-24160710 None:intergenic 35.0%
! AAGTTAAAGCTAGTTTGTCG+GGG - chr8.2:24161418-24161437 MS.gene60411:CDS 35.0%
! AATGCCAGTTCCTTTTCATT+TGG - chr8.2:24161534-24161553 MS.gene60411:CDS 35.0%
! CAAAAGCAAAAGTGTAGAAC+CGG - chr8.2:24161278-24161297 MS.gene60411:intron 35.0%
! GAAGTTAAAGCTAGTTTGTC+GGG - chr8.2:24161417-24161436 MS.gene60411:CDS 35.0%
!! GACAAACTAGCTTTAACTTC+AGG + chr8.2:24161417-24161436 None:intergenic 35.0%
!!! AACTTTGGTTTTTGACCTCA+AGG + chr8.2:24160601-24160620 None:intergenic 35.0%
!!! CCTTTTTGAGGTTTGGAATA+AGG + chr8.2:24160782-24160801 None:intergenic 35.0%
!!! TCCTGATTTTTTACACGTCT+TGG + chr8.2:24160642-24160661 None:intergenic 35.0%
AGAAAGATAAGGCAGTGATG+GGG - chr8.2:24161469-24161488 MS.gene60411:CDS 40.0%
AGCAGTGGAACCAAATGAAA+AGG + chr8.2:24161547-24161566 None:intergenic 40.0%
ATCTACAACTCATCACACAC+CGG - chr8.2:24160692-24160711 MS.gene60411:CDS 40.0%
CTGAAAGAGCTATGAACTGT+TGG + chr8.2:24160758-24160777 None:intergenic 40.0%
GAAATTGTCTGAACTGTCTG+CGG - chr8.2:24161314-24161333 MS.gene60411:intron 40.0%
GAGAAAGATAAGGCAGTGAT+GGG - chr8.2:24161468-24161487 MS.gene60411:CDS 40.0%
GATCCTCTGTGAGAAAGATA+AGG - chr8.2:24161458-24161477 MS.gene60411:CDS 40.0%
GGAACAAGTAAAACTGTTGG+AGG - chr8.2:24161248-24161267 MS.gene60411:intron 40.0%
GGAACCAAATGAAAAGGAAC+TGG + chr8.2:24161541-24161560 None:intergenic 40.0%
TGAGAAAGATAAGGCAGTGA+TGG - chr8.2:24161467-24161486 MS.gene60411:CDS 40.0%
! CAAAAGTGTAGAACCGGTTA+CGG - chr8.2:24161284-24161303 MS.gene60411:intron 40.0%
! TTCATTTGGTTCCACTGCTT+TGG - chr8.2:24161548-24161567 MS.gene60411:CDS 40.0%
!! TTGGTTTTTGACCTCAAGGT+TGG + chr8.2:24160597-24160616 None:intergenic 40.0%
CAGGAGAGCAACAAGAAGAA+CGG - chr8.2:24160657-24160676 MS.gene60411:CDS 45.0%
CTGCCTTATCTTTCTCACAG+AGG + chr8.2:24161464-24161483 None:intergenic 45.0%
GTCTGCGGATGTCAATGTTT+CGG - chr8.2:24161329-24161348 MS.gene60411:intron 45.0%
TATAGCATCACCCAACACTG+AGG + chr8.2:24161208-24161227 None:intergenic 45.0%
TGAAGGTTGTACCAACCTTG+AGG - chr8.2:24160583-24160602 MS.gene60411:CDS 45.0%
ATGGACAAGGCCTCAGTGTT+GGG - chr8.2:24161195-24161214 MS.gene60411:intron 50.0%
GATGGTTATGGCCAAAGCAG+TGG + chr8.2:24161562-24161581 None:intergenic 50.0%
!! CGGGGAAGAATGTGCTGATT+AGG - chr8.2:24161436-24161455 MS.gene60411:CDS 50.0%
GATGGACAAGGCCTCAGTGT+TGG - chr8.2:24161194-24161213 MS.gene60411:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 24160582 24161590 24160582 ID=MS.gene60411
chr8.2 mRNA 24160582 24161590 24160582 ID=MS.gene60411.t1;Parent=MS.gene60411
chr8.2 exon 24161372 24161590 24161372 ID=MS.gene60411.t1.exon1;Parent=MS.gene60411.t1
chr8.2 CDS 24161372 24161590 24161372 ID=cds.MS.gene60411.t1;Parent=MS.gene60411.t1
chr8.2 exon 24160582 24160977 24160582 ID=MS.gene60411.t1.exon2;Parent=MS.gene60411.t1
chr8.2 CDS 24160582 24160977 24160582 ID=cds.MS.gene60411.t1;Parent=MS.gene60411.t1
Gene Sequence

>MS.gene60411

ATGAAGGTTGTACCAACCTTGAGGTCAAAAACCAAAGTTGTGAACTCAAAGAATGGACCAAGACGTGTAAAAAATCAGGAGAGCAACAAGAAGAACGGTTCACTTTCCAAATCTACAACTCATCACACACCGGATCATATAATTGCTGAGAGAATAAGGAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCCCTTATTCCAAACCTCAAAAAGGTTCATTTTTCAATTTATACACATTTGACTCGAACTATATTTTTGTGGGTATGCTAATATGATTCAATTCATATACAATTTGATTACTAAGTTTTTTTTTTCTTTAAGATTTAATTTATATTCATTCATAATGTAAAGATTTTTTAGATTGTGCGTCAATCGGATCAATCATAATCGTTCGATAATTAAAAAAGTTTGACTTTTAATCTTATCATCAGAAACATTTGACTTTATTCTCGTGATTACTTCTAAAATCACGTTGACACACATGATTGATTGTGATTTGGCGTATCAAAATTAAACTACAATCACATTGACACATGTGATTGATTGCGATTTATTGACGGCGTAACAAAATTAAACTATACTAATAATGTACTCCATATGTTTGTAGATGGACAAGGCCTCAGTGTTGGGTGATGCTATAAAGTATGTGAAGGAGCTTAAGGAACAAGTAAAACTGTTGGAGGAGCAAAGCAAAAGCAAAAGTGTAGAACCGGTTACGGTTGTGAAGAAATTGTCTGAACTGTCTGCGGATGTCAATGTTTCGGACACTTCCTCAAATTCATGTAATGGAAACTCTGATGAAACATCAAAAACAAATCTGTCACTACCTGAAGTTAAAGCTAGTTTGTCGGGGAAGAATGTGCTGATTAGGATCCTCTGTGAGAAAGATAAGGCAGTGATGGGGAATGTATATAGAGAAATAGAGAAACTTGGTCTCTTGGTTATCAATGCCAGTTCCTTTTCATTTGGTTCCACTGCTTTGGCCATAACCATCATTGCTCAG
Protein sequence

>MS.gene60411.t1

MKVVPTLRSKTKVVNSKNGPRRVKNQESNKKNGSLSKSTTHHTPDHIIAERIRREKISQQFIALSALIPNLKKMDKASVLGDAIKYVKELKEQVKLLEEQSKSKSVEPVTVVKKLSELSADVNVSDTSSNSCNGNSDETSKTNLSLPEVKASLSGKNVLIRILCEKDKAVMGNVYREIEKLGLLVINASSFSFGSTALAITIIAQ