AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60418

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60418.t1 MTR_3g028520 94.161 411 15 2 1 407 1 406 0.0 793
MS.gene60418.t1 MTR_3g027650 94.161 411 15 2 1 407 1 406 0.0 793
MS.gene60418.t1 MTR_3g027650 90.954 409 24 4 1 404 1 401 0.0 744
MS.gene60418.t1 MTR_3g027650 93.973 365 13 2 1 361 1 360 0.0 695
MS.gene60418.t1 MTR_8g036235 51.111 405 149 10 10 397 18 390 9.58e-106 318
MS.gene60418.t1 MTR_8g036235 49.322 369 138 10 10 361 18 354 9.60e-85 264
MS.gene60418.t1 MTR_1g052470 37.440 414 183 17 14 395 1 370 7.34e-54 183
MS.gene60418.t1 MTR_2g098310 37.441 422 212 18 18 401 3 410 3.30e-53 182
MS.gene60418.t1 MTR_4g065870 34.234 444 214 16 14 402 13 433 1.66e-50 176
MS.gene60418.t1 MTR_2g098310 35.766 411 206 16 18 387 3 396 1.65e-47 167
MS.gene60418.t1 MTR_2g098310 33.261 460 214 17 18 401 3 445 1.05e-45 163
MS.gene60418.t1 MTR_4g065870 34.038 426 204 15 14 384 13 416 3.34e-45 161
MS.gene60418.t1 MTR_7g092540 38.247 251 111 6 162 395 92 315 7.76e-42 150
MS.gene60418.t1 MTR_7g092540 38.843 242 104 6 162 386 92 306 3.19e-39 142
MS.gene60418.t1 MTR_4g033295 68.235 85 27 0 315 399 110 194 4.34e-34 125
MS.gene60418.t1 MTR_2g098310 33.247 385 199 16 18 361 3 370 1.19e-31 124
MS.gene60418.t1 MTR_4g033295 73.611 72 19 0 315 386 110 181 5.96e-31 117
MS.gene60418.t1 MTR_1g116790 62.626 99 36 1 298 396 241 338 1.06e-30 120
MS.gene60418.t1 MTR_4g065870 31.266 403 200 15 14 361 13 393 1.13e-30 122
MS.gene60418.t1 MTR_1g052470 33.799 358 163 16 14 340 1 315 1.21e-26 108
MS.gene60418.t1 MTR_2g098310 31.593 364 191 16 18 340 3 349 9.59e-22 95.9
MS.gene60418.t1 MTR_4g033295 82.979 47 8 0 315 361 110 156 4.46e-20 87.8
MS.gene60418.t1 MTR_6g052280 53.571 84 31 2 286 361 9 92 1.05e-18 82.0
MS.gene60418.t1 MTR_4g131160 54.545 66 29 1 322 387 195 259 6.10e-15 76.3
MS.gene60418.t1 MTR_4g131160 54.545 66 29 1 322 387 198 262 6.43e-15 76.3
MS.gene60418.t1 MTR_3g498825 53.846 65 30 0 323 387 147 211 4.38e-14 73.2
MS.gene60418.t1 MTR_1g080890 47.727 88 38 3 300 387 177 256 3.03e-13 70.9
MS.gene60418.t1 MTR_8g012290 50.769 65 32 0 323 387 291 355 4.71e-13 70.9
MS.gene60418.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 4.73e-13 70.9
MS.gene60418.t1 MTR_8g012290 50.769 65 32 0 323 387 291 355 4.93e-13 70.9
MS.gene60418.t1 MTR_7g053410 50.769 65 32 0 323 387 317 381 5.09e-13 70.9
MS.gene60418.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 5.09e-13 70.5
MS.gene60418.t1 MTR_7g053410 50.769 65 32 0 323 387 317 381 5.21e-13 70.9
MS.gene60418.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 5.36e-13 70.5
MS.gene60418.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 5.77e-13 70.5
MS.gene60418.t1 MTR_8g065740 50.769 65 32 0 323 387 305 369 6.59e-13 70.5
MS.gene60418.t1 MTR_3g116770 50.769 65 32 0 323 387 191 255 6.81e-13 70.1
MS.gene60418.t1 MTR_3g116770 50.769 65 32 0 323 387 191 255 6.85e-13 70.1
MS.gene60418.t1 MTR_5g048860 43.011 93 48 1 300 387 337 429 2.23e-12 68.9
MS.gene60418.t1 MTR_4g070320 46.053 76 39 1 314 387 132 207 3.52e-12 67.4
MS.gene60418.t1 MTR_8g099880 49.231 65 33 0 323 387 145 209 4.26e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60418.t1 AT2G42280 35.732 403 198 14 14 401 1 357 6.90e-50 172
MS.gene60418.t1 AT1G51140 32.732 388 224 12 21 397 17 378 4.66e-43 155
MS.gene60418.t1 AT2G42280 34.625 387 192 14 14 385 1 341 6.64e-43 154
MS.gene60418.t1 AT2G43140 50.336 149 59 4 255 401 77 212 5.89e-38 136
MS.gene60418.t1 AT1G05805 34.109 387 194 14 28 400 21 360 2.32e-37 139
MS.gene60418.t1 AT2G43140 50.676 148 60 4 255 401 174 309 4.67e-37 137
MS.gene60418.t1 AT1G35460 67.857 84 27 0 318 401 176 259 1.43e-33 126
MS.gene60418.t1 AT4G09180 48.571 140 60 3 264 401 133 262 2.66e-31 120
MS.gene60418.t1 AT2G42280 29.619 341 181 13 14 340 1 296 2.32e-19 88.2
MS.gene60418.t1 AT1G35460 76.596 47 11 0 318 364 176 222 5.30e-17 80.1
MS.gene60418.t1 AT2G24260 56.061 66 28 1 322 387 34 98 1.89e-15 75.9
MS.gene60418.t1 AT5G58010 48.235 85 33 3 313 387 79 162 5.73e-15 75.5
MS.gene60418.t1 AT2G24260 56.061 66 28 1 322 387 137 201 5.89e-15 76.3
MS.gene60418.t1 AT4G30980 54.545 66 29 1 322 387 129 193 1.17e-14 74.7
MS.gene60418.t1 AT4G30980 54.545 66 29 1 322 387 177 241 1.43e-14 75.1
MS.gene60418.t1 AT4G34530 52.308 65 31 0 323 387 172 236 1.04e-13 72.0
MS.gene60418.t1 AT5G50915 50.769 65 32 0 323 387 136 200 2.72e-13 70.5
MS.gene60418.t1 AT5G50915 50.769 65 32 0 323 387 136 200 2.72e-13 70.5
MS.gene60418.t1 AT5G50915 50.769 65 32 0 323 387 136 200 3.28e-13 69.7
MS.gene60418.t1 AT5G50915 50.769 65 32 0 323 387 136 200 3.28e-13 69.7
MS.gene60418.t1 AT1G25330 47.692 65 34 0 323 387 104 168 5.71e-13 68.2
MS.gene60418.t1 AT1G68920 50.769 65 32 0 323 387 302 366 7.39e-13 70.5
MS.gene60418.t1 AT1G68920 50.769 65 32 0 323 387 303 367 7.61e-13 70.5
MS.gene60418.t1 AT1G68920 50.769 65 32 0 323 387 303 367 7.61e-13 70.5
MS.gene60418.t1 AT1G68920 50.769 65 32 0 323 387 303 367 7.61e-13 70.5
MS.gene60418.t1 AT3G07340 50.769 65 32 0 323 387 258 322 1.20e-12 69.7
MS.gene60418.t1 AT3G07340 50.769 65 32 0 323 387 258 322 1.31e-12 69.3
MS.gene60418.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.59e-12 68.9
MS.gene60418.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.59e-12 68.9
MS.gene60418.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.59e-12 68.9
MS.gene60418.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.59e-12 68.9
MS.gene60418.t1 AT1G26260 50.769 65 32 0 323 387 201 265 1.68e-12 68.9
MS.gene60418.t1 AT1G26260 50.769 65 32 0 323 387 172 236 1.77e-12 68.6
MS.gene60418.t1 AT1G10120 41.379 87 43 1 301 387 192 270 2.53e-12 68.2
MS.gene60418.t1 AT1G10120 41.379 87 43 1 301 387 192 270 2.53e-12 68.2
MS.gene60418.t1 AT5G48560 49.231 65 33 0 323 387 301 365 3.86e-12 68.2
MS.gene60418.t1 AT5G48560 49.231 65 33 0 323 387 301 365 4.10e-12 68.2
MS.gene60418.t1 AT4G36540 41.463 82 48 0 306 387 124 205 8.49e-12 66.2
MS.gene60418.t1 AT4G36540 41.463 82 48 0 306 387 124 205 8.66e-12 66.2
MS.gene60418.t1 AT1G73830 47.692 65 34 0 323 387 147 211 1.10e-11 65.1
MS.gene60418.t1 AT1G73830 47.692 65 34 0 323 387 147 211 1.19e-11 65.1
MS.gene60418.t1 AT2G18300 46.154 65 35 0 323 387 185 249 6.20e-11 63.9
MS.gene60418.t1 AT2G18300 46.154 65 35 0 323 387 185 249 6.45e-11 63.5
MS.gene60418.t1 AT2G18300 46.154 65 35 0 323 387 185 249 7.46e-11 63.5

Find 55 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATACCTTATCTGATTT+TGG 0.010727 3.2:+18845837 None:intergenic
CTAGCTTCACCAATGAATTT+TGG 0.135326 3.2:-18846263 MS.gene60418:CDS
ACCCTCTCTGCAATGCTTCT+TGG 0.180344 3.2:+18846009 None:intergenic
GACTCTCAAGAAGCAGATTT+TGG 0.193647 3.2:-18846168 MS.gene60418:CDS
GTACCTGAACTTGTTCTTGT+AGG 0.262088 3.2:+18845449 None:intergenic
TACTTGAAGAATCCATTTCT+TGG 0.275479 3.2:+18847780 None:intergenic
CATTCAAAACAACAAAATTC+TGG 0.289744 3.2:-18847752 MS.gene60418:CDS
GATTCTAATCAATCTAAAAT+TGG 0.295488 3.2:-18847365 MS.gene60418:CDS
ATGCCACAAATAGCTGAAAA+TGG 0.316152 3.2:-18846363 MS.gene60418:CDS
TTTGAGCGTTGTTGTCGATT+AGG 0.323950 3.2:+18847684 None:intergenic
CACGGCAGATATGTTGGATT+TGG 0.326350 3.2:-18845491 MS.gene60418:CDS
CAGAATGGTAATTACTCTTA+TGG 0.326591 3.2:-18847479 MS.gene60418:CDS
TTTGTAGTTTGGTCACAATT+TGG 0.335830 3.2:+18846324 None:intergenic
ACAAACCTAGTAAATGAAAA+TGG 0.344072 3.2:-18846306 MS.gene60418:CDS
GGAATTGCTCCAATCTTATT+AGG 0.352113 3.2:-18847337 MS.gene60418:CDS
CATTTACTAGGTTTGTAGTT+TGG 0.361798 3.2:+18846313 None:intergenic
TCCATTTCTGAACTTGTTGA+TGG 0.362031 3.2:+18847617 None:intergenic
GAAGCTAGGTATGTGACTTT+TGG 0.365896 3.2:+18846278 None:intergenic
GCAGATACTCACAGATTGTA+AGG 0.393985 3.2:-18845339 MS.gene60418:intron
TCCATCAACAAGTTCAGAAA+TGG 0.409930 3.2:-18847618 MS.gene60418:CDS
AAACCTGTGAAGCAAGAAAT+AGG 0.413405 3.2:-18847518 MS.gene60418:CDS
AGAATTGTTCCATCCATTGT+TGG 0.420159 3.2:+18847568 None:intergenic
AGAATTGTCCCAAAATTCAT+TGG 0.420165 3.2:+18846254 None:intergenic
TCACCTATTTCTTGCTTCAC+AGG 0.431403 3.2:+18847515 None:intergenic
TTCTACTAAGATGACATCTA+TGG 0.437415 3.2:-18846100 MS.gene60418:CDS
ATCAATCTAAAATTGGTGTT+AGG 0.437757 3.2:-18847358 MS.gene60418:CDS
GCTAAGAAGAAACCAAGAAA+TGG 0.440153 3.2:-18847792 MS.gene60418:CDS
CAGAACCATTTGAAAAGCCT+TGG 0.447461 3.2:+18847438 None:intergenic
TGTAAAATTCGAGCGAAAAG+AGG 0.459613 3.2:-18846045 MS.gene60418:CDS
AAAGCCAATGGCATCTCAAA+TGG 0.469024 3.2:-18846429 MS.gene60418:CDS
GGCCATTTACTAGCTTGAAA+AGG 0.469996 3.2:-18846386 MS.gene60418:CDS
GTACACTTAACTTCTCATCT+AGG 0.475567 3.2:-18846407 MS.gene60418:CDS
TCCAAGAAGCATTGCAGAGA+GGG 0.485454 3.2:-18846010 MS.gene60418:intron
AACAAGCACGGCAGATATGT+TGG 0.496382 3.2:-18845497 MS.gene60418:CDS
AGACCTACAAGAACAAGTTC+AGG 0.503261 3.2:-18845452 MS.gene60418:intron
AGGTTTGTAAACAATGAGGT+TGG 0.522294 3.2:+18847704 None:intergenic
TGTACCATTTGAGATGCCAT+TGG 0.531059 3.2:+18846425 None:intergenic
TGATATCATCCAACAATGGA+TGG 0.538943 3.2:-18847577 MS.gene60418:CDS
CAAAATTCATTGGTGAAGCT+AGG 0.555453 3.2:+18846264 None:intergenic
GAATCTGTTCCTCAACAGAA+TGG 0.561869 3.2:-18847494 MS.gene60418:CDS
GTAGAAAGCTTTAAAGCCAA+TGG 0.573198 3.2:-18846441 MS.gene60418:CDS
TGATATCAACTTGGATAACA+TGG 0.587600 3.2:+18847592 None:intergenic
ATTGTTGGATGATATCAACT+TGG 0.590635 3.2:+18847583 None:intergenic
GGATCTGAGTTGATTTACCA+AGG 0.594347 3.2:-18847455 MS.gene60418:CDS
AATGGTAATTACTCTTATGG+TGG 0.600108 3.2:-18847476 MS.gene60418:CDS
GAGTAATTACCATTCTGTTG+AGG 0.606610 3.2:+18847485 None:intergenic
GACAGAATCAAGAAGCTGCA+AGG 0.607129 3.2:-18845867 MS.gene60418:CDS
TGCAACATTGACGTTGAGAG+AGG 0.614366 3.2:-18846463 MS.gene60418:CDS
GATTAGGTTTGTAAACAATG+AGG 0.615343 3.2:+18847700 None:intergenic
AAAGGATTAAATCAGCTACA+AGG 0.618131 3.2:+18845275 None:intergenic
AATTTGGCAGCAAACAAGCA+CGG 0.620596 3.2:-18845509 MS.gene60418:intron
AAAATTCTGGACTATTGATG+AGG 0.635672 3.2:-18847739 MS.gene60418:CDS
GTCATCTTAGTAGAAGAACT+AGG 0.642089 3.2:+18846108 None:intergenic
AAGTTGATATCATCCAACAA+TGG 0.670047 3.2:-18847581 MS.gene60418:CDS
ATCCAAGAAGCATTGCAGAG+AGG 0.687513 3.2:-18846011 MS.gene60418:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTAATATGAAAATTTC+AGG - chr3.2:18847188-18847207 MS.gene60418:intron 15.0%
!!! ATCAGTAATAACTTTAAAAA+AGG - chr3.2:18847446-18847465 MS.gene60418:CDS 15.0%
!! AAACATACCATAATTACTAT+AGG + chr3.2:18845882-18845901 None:intergenic 20.0%
!! AACATACCATAATTACTATA+GGG + chr3.2:18845881-18845900 None:intergenic 20.0%
!! AGATAAAACAAATGAACAAT+TGG - chr3.2:18846220-18846239 MS.gene60418:CDS 20.0%
!! ATAAAACTGTTAAATCACAT+AGG + chr3.2:18847167-18847186 None:intergenic 20.0%
!! TACGTAGTTTATATACATTT+CGG - chr3.2:18847551-18847570 MS.gene60418:CDS 20.0%
!! TATAGTAATTATGGTATGTT+TGG - chr3.2:18845881-18845900 MS.gene60418:CDS 20.0%
!!! AAAATACCTTATCTGATTTT+GGG + chr3.2:18847263-18847282 None:intergenic 20.0%
!!! ATAATGTTTTCTACTTCAAA+TGG - chr3.2:18846903-18846922 MS.gene60418:intron 20.0%
!!! ATTGTTCATTTGTTTTATCT+TGG + chr3.2:18846220-18846239 None:intergenic 20.0%
!!! GATTCTAATCAATCTAAAAT+TGG - chr3.2:18845733-18845752 MS.gene60418:intron 20.0%
!!! TGAATACTTTTATGAATTGA+AGG - chr3.2:18846609-18846628 MS.gene60418:intron 20.0%
!!! TTAGACATTATAGATTTTGA+TGG + chr3.2:18847719-18847738 None:intergenic 20.0%
!!! TTTTTACCCTATAGTAATTA+TGG - chr3.2:18845872-18845891 MS.gene60418:CDS 20.0%
! ACAAACCTAGTAAATGAAAA+TGG - chr3.2:18846792-18846811 MS.gene60418:intron 25.0%
! ACATAGGTTTAATGATAGTA+TGG + chr3.2:18847151-18847170 None:intergenic 25.0%
! AGCTTATAAAAACAGCTTAT+AGG - chr3.2:18846026-18846045 MS.gene60418:CDS 25.0%
! ATGAAAAATATAAGTGCAGA+AGG - chr3.2:18846316-18846335 MS.gene60418:CDS 25.0%
! CATTCAAAACAACAAAATTC+TGG - chr3.2:18845346-18845365 MS.gene60418:intron 25.0%
! GTAACTTAGTACTTCTAATT+TGG - chr3.2:18847573-18847592 MS.gene60418:CDS 25.0%
! TAATTATGGTATGTTTGGAT+TGG - chr3.2:18845886-18845905 MS.gene60418:CDS 25.0%
! TCAAAATAAGTCAAACAGTT+TGG + chr3.2:18846584-18846603 None:intergenic 25.0%
! TCATTCAATGTGTTTATGTA+AGG + chr3.2:18847689-18847708 None:intergenic 25.0%
! TTAACATATAAAGTACGACA+TGG - chr3.2:18846401-18846420 MS.gene60418:CDS 25.0%
!! ATCAATCTAAAATTGGTGTT+AGG - chr3.2:18845740-18845759 MS.gene60418:intron 25.0%
!! CAAAATACCTTATCTGATTT+TGG + chr3.2:18847264-18847283 None:intergenic 25.0%
!! GAGAATTTTCTTCAAATTCA+AGG - chr3.2:18847020-18847039 MS.gene60418:intron 25.0%
!! GAGTTTTTCTCTAATGAAAA+TGG - chr3.2:18845802-18845821 MS.gene60418:intron 25.0%
AAAATTCTGGACTATTGATG+AGG - chr3.2:18845359-18845378 MS.gene60418:intron 30.0%
AATGGTAATTACTCTTATGG+TGG - chr3.2:18845622-18845641 MS.gene60418:intron 30.0%
ACAATTGGACCAATATTTGT+TGG - chr3.2:18846235-18846254 MS.gene60418:CDS 30.0%
AGAATTGTCCCAAAATTCAT+TGG + chr3.2:18846847-18846866 None:intergenic 30.0%
AGCTTGATTCATCATTAGTA+AGG - chr3.2:18846272-18846291 MS.gene60418:CDS 30.0%
ATATAAAGTACGACATGGAT+AGG - chr3.2:18846406-18846425 MS.gene60418:CDS 30.0%
ATATAAGTCAATATCCGAAC+AGG - chr3.2:18846125-18846144 MS.gene60418:CDS 30.0%
ATTGTTGGATGATATCAACT+TGG + chr3.2:18845518-18845537 None:intergenic 30.0%
CAGAATGGTAATTACTCTTA+TGG - chr3.2:18845619-18845638 MS.gene60418:intron 30.0%
CATTTACTAGGTTTGTAGTT+TGG + chr3.2:18846788-18846807 None:intergenic 30.0%
CTACGTTACTAAAATGCATA+TGG + chr3.2:18847398-18847417 None:intergenic 30.0%
GATTAGGTTTGTAAACAATG+AGG + chr3.2:18845401-18845420 None:intergenic 30.0%
TACTTGAAGAATCCATTTCT+TGG + chr3.2:18845321-18845340 None:intergenic 30.0%
TATAAGTCAATATCCGAACA+GGG - chr3.2:18846126-18846145 MS.gene60418:CDS 30.0%
TGATATCAACTTGGATAACA+TGG + chr3.2:18845509-18845528 None:intergenic 30.0%
TTCATCATTAGTAAGGTCTT+AGG - chr3.2:18846279-18846298 MS.gene60418:CDS 30.0%
TTCTACTAAGATGACATCTA+TGG - chr3.2:18846998-18847017 MS.gene60418:intron 30.0%
TTTGTAGTTTGGTCACAATT+TGG + chr3.2:18846777-18846796 None:intergenic 30.0%
! AATGGTTTTTATGGCTCTTT+TGG - chr3.2:18845685-18845704 MS.gene60418:intron 30.0%
! ACTCTTTTGCCTAATAAGAT+TGG + chr3.2:18845773-18845792 None:intergenic 30.0%
! AGCTACCATTTTCATTTACT+AGG + chr3.2:18846800-18846819 None:intergenic 30.0%
! ATGTCTTCAATCTAAAGTGT+CGG - chr3.2:18847525-18847544 MS.gene60418:CDS 30.0%
! ATTCCATTTTCAGCTATTTG+TGG + chr3.2:18846741-18846760 None:intergenic 30.0%
! ATTTACCAAGGCTTTTCAAA+TGG - chr3.2:18845655-18845674 MS.gene60418:intron 30.0%
! GTTTTCTACTTCAAATGGTT+TGG - chr3.2:18846908-18846927 MS.gene60418:intron 30.0%
! TAGCTTCACCAATGAATTTT+GGG - chr3.2:18846836-18846855 MS.gene60418:intron 30.0%
! TCTTTTCCCAAAATCAGATA+AGG - chr3.2:18847254-18847273 MS.gene60418:intron 30.0%
!! AAGTTGATATCATCCAACAA+TGG - chr3.2:18845517-18845536 MS.gene60418:intron 30.0%
!! ATCCTTTTCAAGCTAGTAAA+TGG + chr3.2:18846717-18846736 None:intergenic 30.0%
!! CTTTTGAGAAAGTTAAAGTC+TGG + chr3.2:18847352-18847371 None:intergenic 30.0%
!!! GATTTTGGCTATCAAAATCT+TGG - chr3.2:18846945-18846964 MS.gene60418:intron 30.0%
!!! GCTGTTTTTATAAGCTATCT+AGG + chr3.2:18846022-18846041 None:intergenic 30.0%
AAACCTGTGAAGCAAGAAAT+AGG - chr3.2:18845580-18845599 MS.gene60418:intron 35.0%
AATCTGTGAGTATCTGCAAA+AGG + chr3.2:18847756-18847775 None:intergenic 35.0%
AGAATTGTTCCATCCATTGT+TGG + chr3.2:18845533-18845552 None:intergenic 35.0%
AGGTTTGTAAACAATGAGGT+TGG + chr3.2:18845397-18845416 None:intergenic 35.0%
AGTAACGTAGACACATATAC+CGG - chr3.2:18847408-18847427 MS.gene60418:CDS 35.0%
ATGCCACAAATAGCTGAAAA+TGG - chr3.2:18846735-18846754 MS.gene60418:intron 35.0%
CAAAATTCATTGGTGAAGCT+AGG + chr3.2:18846837-18846856 None:intergenic 35.0%
CTACTTGGACCAACAAATAT+TGG + chr3.2:18846247-18846266 None:intergenic 35.0%
CTTTAGATTGAAGACATGAC+CGG + chr3.2:18847522-18847541 None:intergenic 35.0%
GAATTTGTCCCTTGTATGAA+CGG - chr3.2:18846338-18846357 MS.gene60418:CDS 35.0%
GAGTAATTACCATTCTGTTG+AGG + chr3.2:18845616-18845635 None:intergenic 35.0%
GCTAAGAAGAAACCAAGAAA+TGG - chr3.2:18845306-18845325 MS.gene60418:CDS 35.0%
GGAATTGCTCCAATCTTATT+AGG - chr3.2:18845761-18845780 MS.gene60418:intron 35.0%
GTACACTTAACTTCTCATCT+AGG - chr3.2:18846691-18846710 MS.gene60418:intron 35.0%
GTCATCTTAGTAGAAGAACT+AGG + chr3.2:18846993-18847012 None:intergenic 35.0%
TCATTAGAGAAAAACTCAGC+AGG + chr3.2:18845799-18845818 None:intergenic 35.0%
TCCATCAACAAGTTCAGAAA+TGG - chr3.2:18845480-18845499 MS.gene60418:CDS 35.0%
TGAAAACATTAAGCCCTGTT+CGG + chr3.2:18846142-18846161 None:intergenic 35.0%
TGATATCATCCAACAATGGA+TGG - chr3.2:18845521-18845540 MS.gene60418:intron 35.0%
TGTAAAATTCGAGCGAAAAG+AGG - chr3.2:18847053-18847072 MS.gene60418:intron 35.0%
TTGAATGTAAGCACATGTGT+TGG - chr3.2:18846463-18846482 MS.gene60418:CDS 35.0%
! ACTATAGGGTAAAAAGCACA+CGG + chr3.2:18845867-18845886 None:intergenic 35.0%
! CTAGCTTCACCAATGAATTT+TGG - chr3.2:18846835-18846854 MS.gene60418:intron 35.0%
! CTTTTCGCTCGAATTTTACA+AGG + chr3.2:18847053-18847072 None:intergenic 35.0%
!! GTAGAAAGCTTTAAAGCCAA+TGG - chr3.2:18846657-18846676 MS.gene60418:intron 35.0%
!! TCCATTTCTGAACTTGTTGA+TGG + chr3.2:18845484-18845503 None:intergenic 35.0%
!!! TTTTCAAATGGTTCTGGCAA+TGG - chr3.2:18845667-18845686 MS.gene60418:intron 35.0%
!!! TTTTGGTGGAGTTGATACTA+TGG - chr3.2:18845702-18845721 MS.gene60418:intron 35.0%
AAAGCCAATGGCATCTCAAA+TGG - chr3.2:18846669-18846688 MS.gene60418:intron 40.0%
AAGCTATCTAGGAGAGCTTA+AGG + chr3.2:18846011-18846030 None:intergenic 40.0%
AATTTGGCAGCAAACAAGCA+CGG - chr3.2:18847589-18847608 MS.gene60418:CDS 40.0%
AGACCTACAAGAACAAGTTC+AGG - chr3.2:18847646-18847665 MS.gene60418:CDS 40.0%
CAGAACCATTTGAAAAGCCT+TGG + chr3.2:18845663-18845682 None:intergenic 40.0%
GAATCTGTTCCTCAACAGAA+TGG - chr3.2:18845604-18845623 MS.gene60418:intron 40.0%
GCAGATACTCACAGATTGTA+AGG - chr3.2:18847759-18847778 MS.gene60418:CDS 40.0%
! ATTTGTTGGTCCAAGTAGCT+AGG - chr3.2:18846249-18846268 MS.gene60418:CDS 40.0%
! CAAGGCTTTTCAAATGGTTC+TGG - chr3.2:18845661-18845680 MS.gene60418:intron 40.0%
! GAAGCTAGGTATGTGACTTT+TGG + chr3.2:18846823-18846842 None:intergenic 40.0%
! GACTCTCAAGAAGCAGATTT+TGG - chr3.2:18846930-18846949 MS.gene60418:intron 40.0%
! GGCCATTTACTAGCTTGAAA+AGG - chr3.2:18846712-18846731 MS.gene60418:intron 40.0%
! GGTTTTTATGGCTCTTTTGG+TGG - chr3.2:18845688-18845707 MS.gene60418:intron 40.0%
! GTACCTGAACTTGTTCTTGT+AGG + chr3.2:18847652-18847671 None:intergenic 40.0%
! TCACCTATTTCTTGCTTCAC+AGG + chr3.2:18845586-18845605 None:intergenic 40.0%
! TGTACCATTTGAGATGCCAT+TGG + chr3.2:18846676-18846695 None:intergenic 40.0%
! TTTGAGCGTTGTTGTCGATT+AGG + chr3.2:18845417-18845436 None:intergenic 40.0%
!! GGATCTGAGTTGATTTACCA+AGG - chr3.2:18845643-18845662 MS.gene60418:intron 40.0%
!! GGTTCTGGCAATGGTTTTTA+TGG - chr3.2:18845676-18845695 MS.gene60418:intron 40.0%
AACAAGCACGGCAGATATGT+TGG - chr3.2:18847601-18847620 MS.gene60418:CDS 45.0%
AGACACCACTTGTCATACAC+CGG - chr3.2:18847500-18847519 MS.gene60418:CDS 45.0%
CACGGCAGATATGTTGGATT+TGG - chr3.2:18847607-18847626 MS.gene60418:CDS 45.0%
GAATCAAGCTCCTAGCTACT+TGG + chr3.2:18846262-18846281 None:intergenic 45.0%
GACAGAATCAAGAAGCTGCA+AGG - chr3.2:18847231-18847250 MS.gene60418:intron 45.0%
TGATGTGTCAGTGTCATGTC+CGG + chr3.2:18847430-18847449 None:intergenic 45.0%
TGCAACATTGACGTTGAGAG+AGG - chr3.2:18846635-18846654 MS.gene60418:intron 45.0%
!! ATCCAAGAAGCATTGCAGAG+AGG - chr3.2:18847087-18847106 MS.gene60418:intron 45.0%
!! GGCTTGTTGAGCTTATCTAC+TGG - chr3.2:18845907-18845926 MS.gene60418:intron 45.0%
!! TCCAAGAAGCATTGCAGAGA+GGG - chr3.2:18847088-18847107 MS.gene60418:intron 45.0%
ACCCTCTCTGCAATGCTTCT+TGG + chr3.2:18847092-18847111 None:intergenic 50.0%
CATGACCGGTGTATGACAAG+TGG + chr3.2:18847508-18847527 None:intergenic 50.0%
GACCCTAGCCGTTCATACAA+GGG + chr3.2:18846349-18846368 None:intergenic 50.0%
GTCCCTTGTATGAACGGCTA+GGG - chr3.2:18846344-18846363 MS.gene60418:CDS 50.0%
TGACCCTAGCCGTTCATACA+AGG + chr3.2:18846350-18846369 None:intergenic 50.0%
TGTCCCTTGTATGAACGGCT+AGG - chr3.2:18846343-18846362 MS.gene60418:CDS 50.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 18845286 18847834 18845286 ID=MS.gene60418
chr3.2 mRNA 18845286 18847834 18845286 ID=MS.gene60418.t1;Parent=MS.gene60418
chr3.2 exon 18847297 18847834 18847297 ID=MS.gene60418.t1.exon1;Parent=MS.gene60418.t1
chr3.2 CDS 18847297 18847834 18847297 ID=cds.MS.gene60418.t1;Parent=MS.gene60418.t1
chr3.2 exon 18846011 18846489 18846011 ID=MS.gene60418.t1.exon2;Parent=MS.gene60418.t1
chr3.2 CDS 18846011 18846489 18846011 ID=cds.MS.gene60418.t1;Parent=MS.gene60418.t1
chr3.2 exon 18845845 18845910 18845845 ID=MS.gene60418.t1.exon3;Parent=MS.gene60418.t1
chr3.2 CDS 18845845 18845910 18845845 ID=cds.MS.gene60418.t1;Parent=MS.gene60418.t1
chr3.2 exon 18845453 18845521 18845453 ID=MS.gene60418.t1.exon4;Parent=MS.gene60418.t1
chr3.2 CDS 18845453 18845521 18845453 ID=cds.MS.gene60418.t1;Parent=MS.gene60418.t1
chr3.2 exon 18845286 18845357 18845286 ID=MS.gene60418.t1.exon5;Parent=MS.gene60418.t1
chr3.2 CDS 18845286 18845357 18845286 ID=cds.MS.gene60418.t1;Parent=MS.gene60418.t1
Gene Sequence

>MS.gene60418

ATGGGTGCTATGTATGAAGAGCTAAGAAGAAACCAAGAAATGGATTCTTCAAGTATTATTCATTCAAAACAACAAAATTCTGGACTATTGATGAGGTACAATTCTGCTCCAACCTCATTGTTTACAAACCTAATCGACAACAACGCTCAAAACTATATCAACAACGAAGAATCTTTTACAAACGAGAGTTATATTCCATCAACAAGTTCAGAAATGGATACCATGTTATCCAAGTTGATATCATCCAACAATGGATGGAACAATTCTGAAGAAAATTTGCAAGAGTTTGATGTGAAACCTGTGAAGCAAGAAATAGGTGAATCTGTTCCTCAACAGAATGGTAATTACTCTTATGGTGGATCTGAGTTGATTTACCAAGGCTTTTCAAATGGTTCTGGCAATGGTTTTTATGGCTCTTTTGGTGGAGTTGATACTATGGAATCAGATGATTCTAATCAATCTAAAATTGGTGTTAGGAATTGCTCCAATCTTATTAGGCAAAAGAGTTCACCTGCTGAGTTTTTCTCTAATGAAAATGGTATGAACTTTTTCTTACTTGCATACTTTTATAGATTTTACCGTGTGCTTTTTACCCTATAGTAATTATGGTATGTTTGGATTGGCTTGTTGAGCTTATCTACTGGCATACACACTTATCAGACTATTTTGACAAGCTTATGAAAATATCTTATGCATGTTTTTAAGTTGTTTTCATCTTTTTTCCTTAAGCTCTCCTAGATAGCTTATAAAAACAGCTTATAGGAAAACAAATTTGATTTTATTCTATCTTTTATTGTAGAAATAGCTTATGCATAAGAGTTTATAGATTAACTCTTATGATATAAGTCAATATCCGAACAGGGCTTAATGTTTTCATATAGTTGAAAGATAAATGTTATGATTTAAATTGAAATACTTCTCTTGTATGAAACCAAGATAAAACAAATGAACAATTGGACCAATATTTGTTGGTCCAAGTAGCTAGGAGCTTGATTCATCATTAGTAAGGTCTTAGGTTTGAGTCTTGTAAATGAAAAATATAAGTGCAGAAGGAATTTGTCCCTTGTATGAACGGCTAGGGTCATCTCTGTTAAATTATAAAAAAATGTTCAAAATTAACATATAAAGTACGACATGGATAGGACACTTGACATGACAATAACACTGATGAACGTGATTGAATGTAAGCACATGTGTTGGCGTCGTGTCAGTATGAGATATTGACATGTGTCAGTGCTACACGTGAATTAACTACACTTTGAAAGTTATTTAGCATTAAATCAAATCAAATCAAACCAAACTGTTTGACTTATTTTGATATTTTGAATACTTTTATGAATTGAAGGACTTGCAACATTGACGTTGAGAGAGGTAGAAAGCTTTAAAGCCAATGGCATCTCAAATGGTACACTTAACTTCTCATCTAGGCCATTTACTAGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATTCAAAGCTTAGAACCAAATTGTGACCAAACTACAAACCTAGTAAATGAAAATGGTAGCTCCAAAAGTCACATACCTAGCTTCACCAATGAATTTTGGGACAATTCTGCATTCAATGCACACAAAACAGAGAGTGAAGATGAAATAATGTTTTCTACTTCAAATGGTTTGGACTCTCAAGAAGCAGATTTTGGCTATCAAAATCTTGGTTTGACTCATCATTTGAGTCTTCCTAGTTCTTCTACTAAGATGACATCTATGGAGAATTTTCTTCAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTTTGCAACTCATCCAAGAAGCATTGCAGAGAGGGTAAAATTTACTACAGTTATAAATCTATCATTACTCGACCATACTATCATTAAACCTATGTGATTTAACAGTTTTATATATGTTAATATGAAAATTTCAGGTAAGAAGAACAAGAATTAGTGACAGAATCAAGAAGCTGCAAGGTCTTTTCCCAAAATCAGATAAGGTATTTTGAAGTCTGTTTATTTTCTAAACAAATTCTGAGTTTTTGTTTTTTTGAAATCGCTGTTCATTTTAAACCAGACTTTAACTTTCTCAAAAGCATATCATATGCTGATTGAAACTCCATATGCATTTTAGTAACGTAGACACATATACCGGACATGACACTGACACATCAGTAATAACTTTAAAAAAGGAAAGTAATTGAATGTTACATGTGTCTGTCTCAGACACCACTTGTCATACACCGGTCATGTCTTCAATCTAAAGTGTCGGTGCTACGTAGTTTATATACATTTCGGTAACTTAGTACTTCTAATTTGGCAGCAAACAAGCACGGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTACAAGAACAAGTTCAGGTACAAGAAAATTATATACCTTACATAAACACATTGAATGATTAAATTCCATCAAAATCTATAATGTCTAACTAAATTTCTTTCACCTTTTGCAGATACTCACAGATTGTAAGGAAAAATGCAAATGTGCAAGTCATGAGAAGAAACACTGTGAACCTTGTAGCTGA
Protein sequence

>MS.gene60418.t1

MGAMYEELRRNQEMDSSSIIHSKQQNSGLLMRYNSAPTSLFTNLIDNNAQNYINNEESFTNESYIPSTSSEMDTMLSKLISSNNGWNNSEENLQEFDVKPVKQEIGESVPQQNGNYSYGGSELIYQGFSNGSGNGFYGSFGGVDTMESDDSNQSKIGVRNCSNLIRQKSSPAEFFSNENGLATLTLREVESFKANGISNGTLNFSSRPFTSLKRMPQIAENGIQSLEPNCDQTTNLVNENGSSKSHIPSFTNEFWDNSAFNAHKTESEDEIMFSTSNGLDSQEADFGYQNLGLTHHLSLPSSSTKMTSMENFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVQILTDCKEKCKCASHEKKHCEPCS