Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60437.t1 | XP_024640473.1 | 38.1 | 504 | 92 | 1 | 173 | 456 | 57 | 560 | 3.20E-84 | 323.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60437.t1 | Q9SZL8 | 36.6 | 183 | 112 | 4 | 194 | 374 | 77 | 257 | 6.9e-19 | 97.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60437.t1 | A0A396J342 | 37.8 | 505 | 94 | 1 | 173 | 457 | 58 | 562 | 5.2e-84 | 322.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60437.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60437.t1 | MTR_7g446520 | 70.881 | 261 | 58 | 1 | 117 | 377 | 15 | 257 | 1.75e-118 | 359 |
| MS.gene60437.t1 | MTR_7g446520 | 68.085 | 47 | 15 | 0 | 57 | 103 | 15 | 61 | 1.76e-11 | 66.6 |
| MS.gene60437.t1 | MTR_7g028855 | 60.119 | 336 | 58 | 5 | 1 | 333 | 1 | 263 | 4.58e-116 | 358 |
| MS.gene60437.t1 | MTR_7g446480 | 49.340 | 379 | 61 | 9 | 1 | 377 | 1 | 250 | 1.27e-95 | 300 |
| MS.gene60437.t1 | MTR_7g446510 | 86.486 | 111 | 15 | 0 | 267 | 377 | 155 | 265 | 6.26e-61 | 208 |
| MS.gene60437.t1 | MTR_1g070355 | 35.500 | 200 | 126 | 2 | 192 | 390 | 76 | 273 | 1.89e-28 | 121 |
| MS.gene60437.t1 | MTR_5g076070 | 32.524 | 206 | 133 | 2 | 147 | 352 | 16 | 215 | 1.82e-25 | 107 |
| MS.gene60437.t1 | MTR_8g467420 | 52.113 | 71 | 34 | 0 | 173 | 243 | 61 | 131 | 7.56e-19 | 85.1 |
| MS.gene60437.t1 | MTR_0645s0010 | 40.566 | 106 | 63 | 0 | 352 | 457 | 5 | 110 | 3.67e-18 | 81.6 |
| MS.gene60437.t1 | MTR_6g022080 | 25.000 | 172 | 129 | 0 | 181 | 352 | 76 | 247 | 7.66e-17 | 81.3 |
| MS.gene60437.t1 | MTR_0402s0040 | 32.584 | 178 | 108 | 4 | 194 | 366 | 30 | 200 | 6.74e-14 | 75.5 |
| MS.gene60437.t1 | MTR_6g051425 | 27.861 | 201 | 140 | 4 | 198 | 394 | 25 | 224 | 8.98e-14 | 73.9 |
| MS.gene60437.t1 | MTR_8g468460 | 51.471 | 68 | 32 | 1 | 389 | 456 | 9 | 75 | 7.17e-12 | 63.2 |
| MS.gene60437.t1 | MTR_0060s0090 | 37.500 | 80 | 50 | 0 | 193 | 272 | 59 | 138 | 1.32e-11 | 63.9 |
| MS.gene60437.t1 | MTR_3g448650 | 41.558 | 77 | 45 | 0 | 186 | 262 | 78 | 154 | 2.75e-11 | 63.5 |
| MS.gene60437.t1 | MTR_6g053140 | 28.488 | 172 | 107 | 4 | 132 | 301 | 47 | 204 | 7.50e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60437.t1 | AT4G38180 | 36.612 | 183 | 112 | 4 | 194 | 374 | 77 | 257 | 7.81e-17 | 85.5 |
Find 156 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCTCCCATGTCTTTC+TGG | 0.036104 | 3.2:+19219344 | None:intergenic |
| AACAATGACTTTACGGATTT+TGG | 0.057115 | 3.2:-19222011 | MS.gene60437:CDS |
| CCCATGTCTTTCTGGCTATC+AGG | 0.233712 | 3.2:+19219352 | None:intergenic |
| AATAAGAACTTGTCATATAA+TGG | 0.247315 | 3.2:-19221055 | MS.gene60437:CDS |
| TGTTCACTACAGACCCAAAA+AGG | 0.266221 | 3.2:-19221214 | MS.gene60437:CDS |
| ATCGTTCTCCCACGTCTATT+TGG | 0.274819 | 3.2:+19219446 | None:intergenic |
| TTTCCTACTTTGGCTTGTTC+AGG | 0.276133 | 3.2:+19218560 | None:intergenic |
| TGCATTTACACCCTATTTAT+CGG | 0.291021 | 3.2:-19221128 | MS.gene60437:CDS |
| CGCAACAAAATCAAACATTC+TGG | 0.291904 | 3.2:+19219871 | None:intergenic |
| AAATGTGGCAGAAGGATTAA+AGG | 0.296254 | 3.2:-19218769 | MS.gene60437:intron |
| TTTGTTGCGTTGGACGAAAA+AGG | 0.308114 | 3.2:-19219857 | MS.gene60437:CDS |
| CATTAACTGCTGAAGGAATA+AGG | 0.318241 | 3.2:-19221470 | MS.gene60437:CDS |
| TGCTGAAGGAATAAGGAAAA+TGG | 0.318497 | 3.2:-19221463 | MS.gene60437:CDS |
| GGTACTTACGTTCATATTCA+TGG | 0.324185 | 3.2:+19218707 | None:intergenic |
| AAACAACAACAATGACTTTA+CGG | 0.325210 | 3.2:-19222018 | MS.gene60437:CDS |
| GGGAGGAAACCCAAAGAAAA+AGG | 0.331670 | 3.2:-19219113 | MS.gene60437:CDS |
| AGTGATTATGGTGGTTGTTC+TGG | 0.332652 | 3.2:-19221780 | MS.gene60437:CDS |
| CGCGTGGTGAGGCACCTGTT+AGG | 0.362850 | 3.2:-19218520 | MS.gene60437:CDS |
| AAGAGTTATGTTAGGAAGAA+AGG | 0.363884 | 3.2:-19220248 | MS.gene60437:intron |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.373380 | 3.2:+19221154 | None:intergenic |
| TTGATGGAGATTTCTCGATA+TGG | 0.385323 | 3.2:-19219784 | MS.gene60437:CDS |
| GGAGACAATGAAAGTGATTA+TGG | 0.394825 | 3.2:-19221792 | MS.gene60437:CDS |
| AGTCTCCTTGATGCCCTAAC+AGG | 0.395341 | 3.2:+19218506 | None:intergenic |
| ACTTCCATCACATTCGCAAT+AGG | 0.398944 | 3.2:+19218208 | None:intergenic |
| TCCCACGTCTATTTGGCTAT+CGG | 0.401616 | 3.2:+19219453 | None:intergenic |
| ATAAGAACTTGTCATATAAT+GGG | 0.403187 | 3.2:-19221054 | MS.gene60437:CDS |
| GCTCAGAAGGGTGGATATCC+TGG | 0.409450 | 3.2:-19221021 | MS.gene60437:CDS |
| GGAAGTAGATTCAAAATTGA+TGG | 0.410232 | 3.2:-19219800 | MS.gene60437:CDS |
| GGTACACCAGAACATGATTA+CGG | 0.421572 | 3.2:-19221990 | MS.gene60437:CDS |
| TTAACGGTGAGATTGTAATA+AGG | 0.421863 | 3.2:-19221347 | MS.gene60437:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 3.2:-19221756 | MS.gene60437:CDS |
| AGATGTGGGAGAAGGATCAA+AGG | 0.425924 | 3.2:-19219236 | MS.gene60437:CDS |
| GATATTAGACGCAATGTTAA+CGG | 0.432015 | 3.2:-19221363 | MS.gene60437:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.434364 | 3.2:-19221287 | MS.gene60437:CDS |
| GTAGAACCGTAATCATGTTC+TGG | 0.434784 | 3.2:+19221984 | None:intergenic |
| CCCACGTCTATTTGGCTATC+GGG | 0.442390 | 3.2:+19219454 | None:intergenic |
| TATAAGTACAATAAGTGTAA+AGG | 0.444286 | 3.2:-19221405 | MS.gene60437:CDS |
| CGAAGCTGCTGAAATCTATA+CGG | 0.445905 | 3.2:-19220096 | MS.gene60437:CDS |
| TGGATAGCATGCTGAGACAT+GGG | 0.448154 | 3.2:+19219160 | None:intergenic |
| GAGAGATGAAGCATTTATCA+AGG | 0.455085 | 3.2:-19221296 | MS.gene60437:CDS |
| AATGTGGCAGAAGGATTAAA+GGG | 0.455198 | 3.2:-19218768 | MS.gene60437:intron |
| ATTGTTCATTGCCACGACTT+TGG | 0.456033 | 3.2:+19218390 | None:intergenic |
| GATGAGCGATATGATGAAAC+TGG | 0.457961 | 3.2:-19221813 | MS.gene60437:CDS |
| AAGGGTGGATATCCTGGTGT+TGG | 0.458467 | 3.2:-19221015 | MS.gene60437:CDS |
| GGGATACATGGTGGCTCAGA+AGG | 0.464555 | 3.2:-19221034 | MS.gene60437:CDS |
| GTAGATAAAGCACAAATTGA+TGG | 0.469140 | 3.2:-19221093 | MS.gene60437:CDS |
| GAAACATATCCGATCATTGT+TGG | 0.469215 | 3.2:-19221942 | MS.gene60437:CDS |
| TCTTGAATGTGGACTATTGT+GGG | 0.469444 | 3.2:-19219822 | MS.gene60437:CDS |
| AAGTCACATTCAACGACATA+AGG | 0.472956 | 3.2:+19218150 | None:intergenic |
| TAGTGAACACGGAGCCTAGC+TGG | 0.473479 | 3.2:+19221228 | None:intergenic |
| TTGAGACATAGGCGTAGAAC+AGG | 0.475503 | 3.2:+19219090 | None:intergenic |
| AGGGTGGATATCCTGGTGTT+GGG | 0.476260 | 3.2:-19221014 | MS.gene60437:CDS |
| TGATTACGGTTCTACGGATG+TGG | 0.481654 | 3.2:-19221976 | MS.gene60437:CDS |
| ATCACATTCGCAATAGGTTC+AGG | 0.486520 | 3.2:+19218214 | None:intergenic |
| TGGCTAGCACTTTGAGACAT+AGG | 0.487691 | 3.2:+19219079 | None:intergenic |
| CAGCACAGGGGATGAAAACC+TGG | 0.488423 | 3.2:+19220145 | None:intergenic |
| AAGCCAAAGTAGGAAAGAAA+AGG | 0.489537 | 3.2:-19218553 | MS.gene60437:CDS |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 3.2:-19221765 | MS.gene60437:CDS |
| TTCTTGAATGTGGACTATTG+TGG | 0.490201 | 3.2:-19219823 | MS.gene60437:CDS |
| CGCAGATGAGTTGTCAGCAC+AGG | 0.491267 | 3.2:+19220131 | None:intergenic |
| GCGTGGTGAGGCACCTGTTA+GGG | 0.491694 | 3.2:-19218519 | MS.gene60437:CDS |
| AAACATATCCGATCATTGTT+GGG | 0.491804 | 3.2:-19221941 | MS.gene60437:CDS |
| AAAGATATTCAAGCTGGGTC+GGG | 0.494884 | 3.2:-19218244 | MS.gene60437:CDS |
| GCAGTATGTATGTAACAAGC+AGG | 0.504546 | 3.2:-19221325 | MS.gene60437:CDS |
| GTGTAGAAAGATATTCAAGC+TGG | 0.504646 | 3.2:-19218250 | MS.gene60437:intron |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 3.2:-19221505 | MS.gene60437:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | 3.2:-19221516 | MS.gene60437:CDS |
| TTGGCTATCGGGCTGAGACA+TGG | 0.511523 | 3.2:+19219465 | None:intergenic |
| GATGTGGGAGAAGGATCAAA+GGG | 0.516814 | 3.2:-19219235 | MS.gene60437:CDS |
| GACGTAGGAGAAGGATCAAA+GGG | 0.517308 | 3.2:-19219133 | MS.gene60437:CDS |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 3.2:-19221477 | MS.gene60437:CDS |
| TGAGACATGGGCACAGAAAG+AGG | 0.521366 | 3.2:+19219478 | None:intergenic |
| AGACGTAGGAGAAGGATCAA+AGG | 0.521535 | 3.2:-19219134 | MS.gene60437:CDS |
| GTGAAAGAAAAGATTATGAA+AGG | 0.522370 | 3.2:-19220056 | MS.gene60437:CDS |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | 3.2:-19221933 | MS.gene60437:CDS |
| TGGCTATCGGGCTGAGACAT+GGG | 0.526272 | 3.2:+19219466 | None:intergenic |
| TTGGATAGCATGCTGAGACA+TGG | 0.527447 | 3.2:+19219159 | None:intergenic |
| TGGCTATCAGGCTGAGACAT+GGG | 0.531630 | 3.2:+19219364 | None:intergenic |
| GAAAGATATTCAAGCTGGGT+CGG | 0.533895 | 3.2:-19218245 | MS.gene60437:CDS |
| AGAACATGATTACGGTTCTA+CGG | 0.545109 | 3.2:-19221982 | MS.gene60437:CDS |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | 3.2:+19221933 | None:intergenic |
| GCCTGATAGCCAGAAAGACA+TGG | 0.549535 | 3.2:-19219353 | MS.gene60437:CDS |
| GCAACAAAATCAAACATTCT+GGG | 0.553804 | 3.2:+19219872 | None:intergenic |
| ATGTGTGCTGTTATTAAGGA+TGG | 0.553864 | 3.2:-19220952 | MS.gene60437:CDS |
| TTGTCATATAATGGGATACA+TGG | 0.555297 | 3.2:-19221046 | MS.gene60437:CDS |
| ATTCCTGAACAAGCCAAAGT+AGG | 0.558608 | 3.2:-19218563 | MS.gene60437:CDS |
| TGTAAATGCACAACATTGGT+TGG | 0.560698 | 3.2:+19221141 | None:intergenic |
| AATCAAACATTCTGGGAGCA+TGG | 0.560825 | 3.2:+19219879 | None:intergenic |
| GAAGATTGGTTTCTTGAATG+TGG | 0.561039 | 3.2:-19219833 | MS.gene60437:CDS |
| CTGGCTATCAGGCTGAGACA+TGG | 0.561329 | 3.2:+19219363 | None:intergenic |
| TGCAGGAAATTTGAATCTCG+AGG | 0.563863 | 3.2:-19219906 | MS.gene60437:intron |
| CTCGTACAAAGTGGCCAGCT+AGG | 0.566086 | 3.2:-19221242 | MS.gene60437:CDS |
| TTCTTAGTGAACCCAACACC+AGG | 0.567834 | 3.2:+19221003 | None:intergenic |
| AGCTAGAAAGATGTGGGAGA+AGG | 0.569010 | 3.2:-19219244 | MS.gene60437:intron |
| AGAAAGATGTTCAGTGCTTG+CGG | 0.570159 | 3.2:+19219390 | None:intergenic |
| GCATGATAGCTAGAAAGATG+TGG | 0.572569 | 3.2:-19219251 | MS.gene60437:intron |
| TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 3.2:-19221500 | MS.gene60437:CDS |
| TACATGGTGGCTCAGAAGGG+TGG | 0.573659 | 3.2:-19221030 | MS.gene60437:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | 3.2:-19221936 | MS.gene60437:CDS |
| GCAGGAAATTTGAATCTCGA+GGG | 0.574935 | 3.2:-19219905 | MS.gene60437:intron |
| GCAGATGAGTTGTCAGCACA+GGG | 0.575960 | 3.2:+19220132 | None:intergenic |
| AGACGTGGGAGAACGATCAA+AGG | 0.576446 | 3.2:-19219440 | MS.gene60437:CDS |
| TAGTCAAAGCGAGGTTGTCA+AGG | 0.577221 | 3.2:-19218742 | MS.gene60437:CDS |
| AGGCACCTGTTAGGGCATCA+AGG | 0.577424 | 3.2:-19218511 | MS.gene60437:CDS |
| GACGTGGGAGAACGATCAAA+GGG | 0.577679 | 3.2:-19219439 | MS.gene60437:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.579998 | 3.2:-19221711 | MS.gene60437:CDS |
| CAGTATGTATGTAACAAGCA+GGG | 0.585741 | 3.2:-19221324 | MS.gene60437:CDS |
| GATGAAGGTGAACGTGATGA+AGG | 0.589312 | 3.2:-19221651 | MS.gene60437:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | 3.2:-19221744 | MS.gene60437:CDS |
| AGCCAGAAAGACATGGGAGA+AGG | 0.589693 | 3.2:-19219346 | MS.gene60437:CDS |
| GAAGGTGAACGTGATGAAGG+TGG | 0.592672 | 3.2:-19221648 | MS.gene60437:CDS |
| GATTTAGGAGGCCAAAGTCG+TGG | 0.601714 | 3.2:-19218401 | MS.gene60437:intron |
| GTGGGAGAAGGATCAAAGGG+AGG | 0.602463 | 3.2:-19219232 | MS.gene60437:CDS |
| TGTAGAAAGATATTCAAGCT+GGG | 0.603793 | 3.2:-19218249 | MS.gene60437:intron |
| TGAACCTATTGCGAATGTGA+TGG | 0.604850 | 3.2:-19218212 | MS.gene60437:CDS |
| GATGAACGTGAAGGTGATGA+AGG | 0.607198 | 3.2:-19221666 | MS.gene60437:CDS |
| AGGGTGTAAATGCACAACAT+TGG | 0.610800 | 3.2:+19221137 | None:intergenic |
| CATGATAGCTAGAAAGATGT+GGG | 0.612282 | 3.2:-19219250 | MS.gene60437:intron |
| GGATACATGGTGGCTCAGAA+GGG | 0.612576 | 3.2:-19221033 | MS.gene60437:CDS |
| GTGGCAGAAGGATTAAAGGG+AGG | 0.614421 | 3.2:-19218765 | MS.gene60437:intron |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | 3.2:-19221555 | MS.gene60437:CDS |
| AGAAAGAGGTTCAGTGTCTG+CGG | 0.620173 | 3.2:+19219492 | None:intergenic |
| GAAAAGAAGAACGCGTGGTG+AGG | 0.625556 | 3.2:-19218531 | MS.gene60437:CDS |
| GACGTCTCACTCGTACAAAG+TGG | 0.631238 | 3.2:-19221251 | MS.gene60437:CDS |
| GCCCGATAGCCAAATAGACG+TGG | 0.632724 | 3.2:-19219455 | MS.gene60437:CDS |
| TGCACAACATTGGTTGGAGT+AGG | 0.634569 | 3.2:+19221147 | None:intergenic |
| GGTGAACGTGATGAAGGTGG+AGG | 0.647603 | 3.2:-19221645 | MS.gene60437:CDS |
| CAGGAAATTTGAATCTCGAG+GGG | 0.648693 | 3.2:-19219904 | MS.gene60437:CDS |
| AGTATGTATGTAACAAGCAG+GGG | 0.650597 | 3.2:-19221323 | MS.gene60437:CDS |
| CAAAGGGAGGCAAATCAAAG+AGG | 0.651344 | 3.2:-19219423 | MS.gene60437:CDS |
| CCTGATAGCCAGAAAGACAT+GGG | 0.658058 | 3.2:-19219352 | MS.gene60437:CDS |
| TGATGATGTAGTTGTTGGTG+AGG | 0.665725 | 3.2:-19221511 | MS.gene60437:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3.2:-19221564 | MS.gene60437:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3.2:-19221609 | MS.gene60437:CDS |
| AAAAGGAAAAGAAGAACGCG+TGG | 0.668324 | 3.2:-19218536 | MS.gene60437:CDS |
| TCATATAATGGGATACATGG+TGG | 0.669224 | 3.2:-19221043 | MS.gene60437:CDS |
| CCCGATAGCCAAATAGACGT+GGG | 0.672860 | 3.2:-19219454 | MS.gene60437:CDS |
| CTTGAATGTGGACTATTGTG+GGG | 0.678410 | 3.2:-19219821 | MS.gene60437:CDS |
| GATGATGATGATGTGAGTCA+TGG | 0.679569 | 3.2:-19221870 | MS.gene60437:CDS |
| CAAAGGGAGGAAAATCAAAG+AGG | 0.680357 | 3.2:-19219219 | MS.gene60437:CDS |
| AGGTGTTGCACTGAGTGTGA+AGG | 0.686205 | 3.2:-19220036 | MS.gene60437:CDS |
| GACAATGAAAGTGATTATGG+TGG | 0.688706 | 3.2:-19221789 | MS.gene60437:CDS |
| AAAGGGAGGTAGTCAAAGCG+AGG | 0.690394 | 3.2:-19218751 | MS.gene60437:CDS |
| GGATAAGAACATTGACAGTG+AGG | 0.691214 | 3.2:-19218597 | MS.gene60437:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.694719 | 3.2:-19221585 | MS.gene60437:CDS |
| GGTGGAGGTGATGAAAGTGA+AGG | 0.700815 | 3.2:-19221630 | MS.gene60437:CDS |
| GTAGGAGAAGGATCAAAGGG+AGG | 0.705292 | 3.2:-19219130 | MS.gene60437:CDS |
| GTGGGAGAACGATCAAAGGG+AGG | 0.712846 | 3.2:-19219436 | MS.gene60437:CDS |
| ATTGATGGTCTTCAGTCACA+CGG | 0.717148 | 3.2:-19221078 | MS.gene60437:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3.2:-19221570 | MS.gene60437:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3.2:-19221615 | MS.gene60437:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.717258 | 3.2:-19221720 | MS.gene60437:CDS |
| GGTGAAAGTGATGAAAGTGA+AGG | 0.731328 | 3.2:-19221690 | MS.gene60437:CDS |
| AGTGAAGGCGATGAACGTGA+AGG | 0.732999 | 3.2:-19221675 | MS.gene60437:CDS |
| TATTTATCGGAAAATATACG+AGG | 0.773295 | 3.2:-19221115 | MS.gene60437:CDS |
| CAGATGAGTTGTCAGCACAG+GGG | 0.773409 | 3.2:+19220133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATATAAACTTATATG+TGG | - | chr3.2:19219522-19219541 | MS.gene60437:intron | 15.0% |
| !! | AACAATATAAACTTATATGT+GGG | - | chr3.2:19219523-19219542 | MS.gene60437:intron | 15.0% |
| !! | AAATCATAAAGAGTTATGTT+AGG | - | chr3.2:19219926-19219945 | MS.gene60437:intron | 20.0% |
| !! | AAATTGAGAAGTTAATCAAA+AGG | + | chr3.2:19221559-19221578 | None:intergenic | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr3.2:19219127-19219146 | MS.gene60437:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr3.2:19219128-19219147 | MS.gene60437:CDS | 20.0% |
| !! | ATATATGAGTTCAAGAATAT+GGG | + | chr3.2:19221729-19221748 | None:intergenic | 20.0% |
| !! | TATAAGTACAATAAGTGTAA+AGG | - | chr3.2:19218777-19218796 | MS.gene60437:intron | 20.0% |
| !!! | ACATGGATAATTTTTGATTT+AGG | - | chr3.2:19221766-19221785 | MS.gene60437:CDS | 20.0% |
| !!! | CTCATATATGTTGTTTTTTA+AGG | - | chr3.2:19221740-19221759 | MS.gene60437:CDS | 20.0% |
| !!! | TTGATTAACTTCTCAATTTT+TGG | - | chr3.2:19221560-19221579 | MS.gene60437:CDS | 20.0% |
| !!! | TTTTTTAAAACCTTCCAAAA+AGG | + | chr3.2:19219717-19219736 | None:intergenic | 20.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr3.2:19218164-19218183 | MS.gene60437:CDS | 25.0% |
| ! | AAGTCAAAAACATTTCTCAT+TGG | + | chr3.2:19221906-19221925 | None:intergenic | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr3.2:19218705-19218724 | MS.gene60437:intron | 25.0% |
| ! | ATATGAGAACAAAGAATTGT+GGG | - | chr3.2:19219834-19219853 | MS.gene60437:CDS | 25.0% |
| ! | CATATATGAGTTCAAGAATA+TGG | + | chr3.2:19221730-19221749 | None:intergenic | 25.0% |
| ! | CCAACAATGTGTTTAAATAT+AGG | - | chr3.2:19221496-19221515 | MS.gene60437:CDS | 25.0% |
| ! | CCTATATTTAAACACATTGT+TGG | + | chr3.2:19221499-19221518 | None:intergenic | 25.0% |
| ! | GTGAAAGAAAAGATTATGAA+AGG | - | chr3.2:19220126-19220145 | MS.gene60437:CDS | 25.0% |
| ! | TATTTATCGGAAAATATACG+AGG | - | chr3.2:19219067-19219086 | MS.gene60437:intron | 25.0% |
| !! | AAAAATGTGTGCTGTTATTA+AGG | - | chr3.2:19219226-19219245 | MS.gene60437:CDS | 25.0% |
| !! | AATTTTACGAAGAATACTCA+AGG | - | chr3.2:19218336-19218355 | MS.gene60437:intron | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr3.2:19219736-19219755 | MS.gene60437:intron | 25.0% |
| !! | ATGTGTTTACAAATTTTTGC+AGG | - | chr3.2:19220432-19220451 | MS.gene60437:intron | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+GGG | - | chr3.2:19218337-19218356 | MS.gene60437:intron | 25.0% |
| !! | CGTATATTTTCCGATAAATA+GGG | + | chr3.2:19219067-19219086 | None:intergenic | 25.0% |
| !! | GAACATTTTCTTACAAACTT+TGG | + | chr3.2:19220632-19220651 | None:intergenic | 25.0% |
| !! | TCGTATATTTTCCGATAAAT+AGG | + | chr3.2:19219068-19219087 | None:intergenic | 25.0% |
| !! | TGTGTTTACAAATTTTTGCA+GGG | - | chr3.2:19220433-19220452 | MS.gene60437:intron | 25.0% |
| !! | TTCTTTGTTCTCATATGTTT+TGG | + | chr3.2:19219830-19219849 | None:intergenic | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr3.2:19219340-19219359 | MS.gene60437:CDS | 25.0% |
| !!! | ACTAGTTTTCTAGATTGTAT+GGG | - | chr3.2:19219551-19219570 | MS.gene60437:intron | 25.0% |
| !!! | ATTTCTGCATAATTTTGATG+AGG | - | chr3.2:19219969-19219988 | MS.gene60437:intron | 25.0% |
| !!! | GTTGTTTTTTAAGGTTAACA+TGG | - | chr3.2:19221749-19221768 | MS.gene60437:CDS | 25.0% |
| !!! | TGGATAATTTTTGATTTAGG+AGG | - | chr3.2:19221769-19221788 | MS.gene60437:CDS | 25.0% |
| AAAAACATTTCTCATTGGAC+TGG | + | chr3.2:19221901-19221920 | None:intergenic | 30.0% | |
| AAAACATTTCTCATTGGACT+GGG | + | chr3.2:19221900-19221919 | None:intergenic | 30.0% | |
| AAACATATCCGATCATTGTT+GGG | - | chr3.2:19218241-19218260 | MS.gene60437:CDS | 30.0% | |
| AAGAGTTATGTTAGGAAGAA+AGG | - | chr3.2:19219934-19219953 | MS.gene60437:intron | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr3.2:19218895-19218914 | MS.gene60437:intron | 30.0% | |
| CAAATATAACTGTTTGTGAG+TGG | + | chr3.2:19219481-19219500 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | chr3.2:19219479-19219498 | MS.gene60437:CDS | 30.0% | |
| CATATGAGAACAAAGAATTG+TGG | - | chr3.2:19219833-19219852 | MS.gene60437:CDS | 30.0% | |
| GAAGTTGACAAAATATCTTG+AGG | - | chr3.2:19220200-19220219 | MS.gene60437:CDS | 30.0% | |
| GAATATTCACAAAAGGAATG+TGG | + | chr3.2:19219305-19219324 | None:intergenic | 30.0% | |
| GATATTAGACGCAATGTTAA+CGG | - | chr3.2:19218819-19218838 | MS.gene60437:intron | 30.0% | |
| GCAACAAAATCAAACATTCT+GGG | + | chr3.2:19220313-19220332 | None:intergenic | 30.0% | |
| GGAAGTAGATTCAAAATTGA+TGG | - | chr3.2:19220382-19220401 | MS.gene60437:intron | 30.0% | |
| GTAAGAAAATGTTCAAACTG+TGG | - | chr3.2:19220638-19220657 | MS.gene60437:intron | 30.0% | |
| GTAGATAAAGCACAAATTGA+TGG | - | chr3.2:19219089-19219108 | MS.gene60437:CDS | 30.0% | |
| TGCATTTACACCCTATTTAT+CGG | - | chr3.2:19219054-19219073 | MS.gene60437:intron | 30.0% | |
| TGTAGAAAGATATTCAAGCT+GGG | - | chr3.2:19221933-19221952 | MS.gene60437:CDS | 30.0% | |
| TTAACGGTGAGATTGTAATA+AGG | - | chr3.2:19218835-19218854 | MS.gene60437:intron | 30.0% | |
| TTGACAAAATATCTTGAGGA+AGG | - | chr3.2:19220204-19220223 | MS.gene60437:CDS | 30.0% | |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr3.2:19218171-19218190 | MS.gene60437:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr3.2:19219739-19219758 | MS.gene60437:intron | 30.0% |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr3.2:19218984-19219003 | None:intergenic | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | - | chr3.2:19219759-19219778 | MS.gene60437:intron | 30.0% |
| ! | CAGAACATGTCTTTTTCTTT+GGG | + | chr3.2:19221162-19221181 | None:intergenic | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | - | chr3.2:19219761-19219780 | MS.gene60437:intron | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | - | chr3.2:19219760-19219779 | MS.gene60437:intron | 30.0% |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr3.2:19219136-19219155 | MS.gene60437:CDS | 30.0% |
| ! | TTTCCTTTTCTTTCCTACTT+TGG | + | chr3.2:19221635-19221654 | None:intergenic | 30.0% |
| !! | AAATGTCTATTTTGGGAAGA+TGG | - | chr3.2:19219347-19219366 | MS.gene60437:CDS | 30.0% |
| !! | AATGTTTGATTTTGTTGCGT+TGG | - | chr3.2:19220315-19220334 | MS.gene60437:intron | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+TGG | - | chr3.2:19219377-19219396 | MS.gene60437:CDS | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | - | chr3.2:19219762-19219781 | MS.gene60437:intron | 30.0% |
| !! | CAGTACGAGTCTTTTTATTT+GGG | + | chr3.2:19221264-19221283 | None:intergenic | 30.0% |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr3.2:19219339-19219358 | MS.gene60437:CDS | 30.0% |
| !! | TTGTAGCTGATTTTAAATCC+AGG | - | chr3.2:19220019-19220038 | MS.gene60437:intron | 30.0% |
| !!! | GACTAGTTTTCTAGATTGTA+TGG | - | chr3.2:19219550-19219569 | MS.gene60437:intron | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr3.2:19218999-19219018 | MS.gene60437:intron | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr3.2:19218998-19219017 | MS.gene60437:intron | 30.0% |
| !!! | TTAACTTCTCAATTTTTGGC+AGG | - | chr3.2:19221564-19221583 | MS.gene60437:CDS | 30.0% |
| AAATGTGGCAGAAGGATTAA+AGG | - | chr3.2:19221413-19221432 | MS.gene60437:CDS | 35.0% | |
| AAGCCAAAGTAGGAAAGAAA+AGG | - | chr3.2:19221629-19221648 | MS.gene60437:CDS | 35.0% | |
| AATGTGGCAGAAGGATTAAA+GGG | - | chr3.2:19221414-19221433 | MS.gene60437:CDS | 35.0% | |
| AGAACATGATTACGGTTCTA+CGG | - | chr3.2:19218200-19218219 | MS.gene60437:CDS | 35.0% | |
| AGTATGTATGTAACAAGCAG+GGG | - | chr3.2:19218859-19218878 | MS.gene60437:intron | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr3.2:19218462-19218481 | MS.gene60437:intron | 35.0% | |
| AGTGGCAGAATATTCACAAA+AGG | + | chr3.2:19219312-19219331 | None:intergenic | 35.0% | |
| CAAAATTGTTCATTTCGCGA+CGG | + | chr3.2:19221851-19221870 | None:intergenic | 35.0% | |
| CAGTATGTATGTAACAAGCA+GGG | - | chr3.2:19218858-19218877 | MS.gene60437:intron | 35.0% | |
| CATGATAGCTAGAAAGATGT+GGG | - | chr3.2:19220932-19220951 | MS.gene60437:CDS | 35.0% | |
| CATTAACTGCTGAAGGAATA+AGG | - | chr3.2:19218712-19218731 | MS.gene60437:intron | 35.0% | |
| CGCAACAAAATCAAACATTC+TGG | + | chr3.2:19220314-19220333 | None:intergenic | 35.0% | |
| GAAACATATCCGATCATTGT+TGG | - | chr3.2:19218240-19218259 | MS.gene60437:CDS | 35.0% | |
| GACAATGAAAGTGATTATGG+TGG | - | chr3.2:19218393-19218412 | MS.gene60437:CDS | 35.0% | |
| GGAGACAATGAAAGTGATTA+TGG | - | chr3.2:19218390-19218409 | MS.gene60437:CDS | 35.0% | |
| GGTACTTACGTTCATATTCA+TGG | + | chr3.2:19221478-19221497 | None:intergenic | 35.0% | |
| GTGAAGGAAAAAGAAGTGAT+TGG | - | chr3.2:19220162-19220181 | MS.gene60437:CDS | 35.0% | |
| GTGTAGAAAGATATTCAAGC+TGG | - | chr3.2:19221932-19221951 | MS.gene60437:CDS | 35.0% | |
| TGCTCCAAAGAAGAAGTAAA+AGG | - | chr3.2:19220604-19220623 | MS.gene60437:intron | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr3.2:19218719-19218738 | MS.gene60437:CDS | 35.0% | |
| TGTAAATGCACAACATTGGT+TGG | + | chr3.2:19219044-19219063 | None:intergenic | 35.0% | |
| TGTTACTGGAAACTCAACAA+TGG | - | chr3.2:19220544-19220563 | MS.gene60437:intron | 35.0% | |
| TTGATGGAGATTTCTCGATA+TGG | - | chr3.2:19220398-19220417 | MS.gene60437:intron | 35.0% | |
| ! | AAGAATTCAGCCTTTTTGGA+AGG | - | chr3.2:19219704-19219723 | MS.gene60437:intron | 35.0% |
| ! | ATGTGTGCTGTTATTAAGGA+TGG | - | chr3.2:19219230-19219249 | MS.gene60437:CDS | 35.0% |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr3.2:19218985-19219004 | None:intergenic | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | chr3.2:19218666-19218685 | MS.gene60437:intron | 35.0% |
| ! | GAGAGATGAAGCATTTATCA+AGG | - | chr3.2:19218886-19218905 | MS.gene60437:intron | 35.0% |
| ! | GCAGAACATGTCTTTTTCTT+TGG | + | chr3.2:19221163-19221182 | None:intergenic | 35.0% |
| ! | GCAGTACGAGTCTTTTTATT+TGG | + | chr3.2:19221265-19221284 | None:intergenic | 35.0% |
| ! | TAGAACAGGCCTTTTTCTTT+GGG | + | chr3.2:19221081-19221100 | None:intergenic | 35.0% |
| ! | TCATATAATGGGATACATGG+TGG | - | chr3.2:19219139-19219158 | MS.gene60437:CDS | 35.0% |
| ! | TCTTGAATGTGGACTATTGT+GGG | - | chr3.2:19220360-19220379 | MS.gene60437:intron | 35.0% |
| ! | TGTCAAGAATTCAGCCTTTT+TGG | - | chr3.2:19219700-19219719 | MS.gene60437:intron | 35.0% |
| ! | TTCTTGAATGTGGACTATTG+TGG | - | chr3.2:19220359-19220378 | MS.gene60437:intron | 35.0% |
| !! | AATTTTGATGAGGCAATGAG+AGG | - | chr3.2:19219979-19219998 | MS.gene60437:intron | 35.0% |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr3.2:19218597-19218616 | MS.gene60437:CDS | 35.0% |
| !! | AGTTATATTTGGTGCTGCAT+TGG | - | chr3.2:19219490-19219509 | MS.gene60437:CDS | 35.0% |
| !! | GAAGATTGGTTTCTTGAATG+TGG | - | chr3.2:19220349-19220368 | MS.gene60437:intron | 35.0% |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr3.2:19218426-19218445 | MS.gene60437:intron | 35.0% |
| !!! | AATCCTTCTGCCACATTTTT+TGG | + | chr3.2:19221411-19221430 | None:intergenic | 35.0% |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr3.2:19218790-19218809 | MS.gene60437:intron | 35.0% |
| !!! | TCATATGTTTTGGTAACCCA+TGG | + | chr3.2:19219820-19219839 | None:intergenic | 35.0% |
| AAAAGGAAAAGAAGAACGCG+TGG | - | chr3.2:19221646-19221665 | MS.gene60437:CDS | 40.0% | |
| AAAGATATTCAAGCTGGGTC+GGG | - | chr3.2:19221938-19221957 | MS.gene60437:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr3.2:19219445-19219464 | None:intergenic | 40.0% | |
| ACTTCCATCACATTCGCAAT+AGG | + | chr3.2:19221977-19221996 | None:intergenic | 40.0% | |
| AGAAAGATGTTCAGTGCTTG+CGG | + | chr3.2:19220795-19220814 | None:intergenic | 40.0% | |
| AGGGTGTAAATGCACAACAT+TGG | + | chr3.2:19219048-19219067 | None:intergenic | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3.2:19218567-19218586 | MS.gene60437:CDS | 40.0% | |
| AGTGATTATGGTGGTTGTTC+TGG | - | chr3.2:19218402-19218421 | MS.gene60437:intron | 40.0% | |
| ATCACATTCGCAATAGGTTC+AGG | + | chr3.2:19221971-19221990 | None:intergenic | 40.0% | |
| ATCCAAAAAGACGTAGGAGA+AGG | - | chr3.2:19221040-19221059 | MS.gene60437:CDS | 40.0% | |
| ATTCCTGAACAAGCCAAAGT+AGG | - | chr3.2:19221619-19221638 | MS.gene60437:CDS | 40.0% | |
| ATTGCCTTGAGAACAATCCA+TGG | - | chr3.2:19219800-19219819 | MS.gene60437:CDS | 40.0% | |
| ATTGTTCATTGCCACGACTT+TGG | + | chr3.2:19221795-19221814 | None:intergenic | 40.0% | |
| CAAAGGGAGGAAAATCAAAG+AGG | - | chr3.2:19220963-19220982 | MS.gene60437:CDS | 40.0% | |
| CAGGAAATTTGAATCTCGAG+GGG | - | chr3.2:19220278-19220297 | MS.gene60437:intron | 40.0% | |
| CAGTAACAGTTGGAACTTCA+GGG | + | chr3.2:19220532-19220551 | None:intergenic | 40.0% | |
| CATGCTATCCAAAAAGACGT+AGG | - | chr3.2:19221034-19221053 | MS.gene60437:CDS | 40.0% | |
| CCAAAAGCAGTTGTAACAGA+TGG | - | chr3.2:19219584-19219603 | MS.gene60437:intron | 40.0% | |
| CCATTGCCAATGAAGTGTAA+AGG | - | chr3.2:19220581-19220600 | MS.gene60437:intron | 40.0% | |
| CCTTTACACTTCATTGGCAA+TGG | + | chr3.2:19220584-19220603 | None:intergenic | 40.0% | |
| CGAAGCTGCTGAAATCTATA+CGG | - | chr3.2:19220086-19220105 | MS.gene60437:CDS | 40.0% | |
| GAAAGATATTCAAGCTGGGT+CGG | - | chr3.2:19221937-19221956 | MS.gene60437:CDS | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | - | chr3.2:19219433-19219452 | MS.gene60437:CDS | 40.0% | |
| GAAGAAGATGATACTGTGTC+AGG | - | chr3.2:19221818-19221837 | MS.gene60437:CDS | 40.0% | |
| GAATATTCTGCCACTGATGA+CGG | - | chr3.2:19219317-19219336 | MS.gene60437:intron | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | chr3.2:19218471-19218490 | MS.gene60437:intron | 40.0% | |
| GATGAGCGATATGATGAAAC+TGG | - | chr3.2:19218369-19218388 | MS.gene60437:intron | 40.0% | |
| GCAGGAAATTTGAATCTCGA+GGG | - | chr3.2:19220277-19220296 | MS.gene60437:intron | 40.0% | |
| GCAGTATGTATGTAACAAGC+AGG | - | chr3.2:19218857-19218876 | MS.gene60437:intron | 40.0% | |
| GCATCTGAACAAGAATGCTA+TGG | - | chr3.2:19219673-19219692 | MS.gene60437:intron | 40.0% | |
| GCATGATAGCTAGAAAGATG+TGG | - | chr3.2:19220931-19220950 | MS.gene60437:CDS | 40.0% | |
| GGATAAGAACATTGACAGTG+AGG | - | chr3.2:19221585-19221604 | MS.gene60437:CDS | 40.0% | |
| GGATGGCATACAAAAGCTTT+AGG | - | chr3.2:19220493-19220512 | MS.gene60437:intron | 40.0% | |
| GGTACACCAGAACATGATTA+CGG | - | chr3.2:19218192-19218211 | MS.gene60437:CDS | 40.0% | |
| GGTGAAAGTGATGAAAGTGA+AGG | - | chr3.2:19218492-19218511 | MS.gene60437:intron | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr3.2:19218438-19218457 | MS.gene60437:intron | 40.0% | |
| GTAGAACCGTAATCATGTTC+TGG | + | chr3.2:19218201-19218220 | None:intergenic | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | chr3.2:19218969-19218988 | MS.gene60437:intron | 40.0% | |
| GTTGAGTTTCCAGTAACAGT+TGG | + | chr3.2:19220542-19220561 | None:intergenic | 40.0% | |
| TACATGCGTGACGATTTCTT+TGG | - | chr3.2:19219865-19219884 | MS.gene60437:CDS | 40.0% | |
| TAGCCAAAAAATGTGGCAGA+AGG | - | chr3.2:19221405-19221424 | MS.gene60437:CDS | 40.0% | |
| TGAACCTATTGCGAATGTGA+TGG | - | chr3.2:19221970-19221989 | MS.gene60437:CDS | 40.0% | |
| TGCAGGAAATTTGAATCTCG+AGG | - | chr3.2:19220276-19220295 | MS.gene60437:intron | 40.0% | |
| TGTTCACTACAGACCCAAAA+AGG | - | chr3.2:19218968-19218987 | MS.gene60437:intron | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr3.2:19218417-19218436 | MS.gene60437:intron | 40.0% | |
| TTGCCTTGAGAACAATCCAT+GGG | - | chr3.2:19219801-19219820 | MS.gene60437:CDS | 40.0% | |
| TTTGTTGCGTTGGACGAAAA+AGG | - | chr3.2:19220325-19220344 | MS.gene60437:intron | 40.0% | |
| ! | AATCAAACATTCTGGGAGCA+TGG | + | chr3.2:19220306-19220325 | None:intergenic | 40.0% |
| ! | AGAGTGCTAGCCAAAAAATG+TGG | - | chr3.2:19221398-19221417 | MS.gene60437:CDS | 40.0% |
| ! | ATCCTTCTACCACGTCTTTT+TGG | + | chr3.2:19221228-19221247 | None:intergenic | 40.0% |
| ! | ATCCTTCTCCTACGTCTTTT+TGG | + | chr3.2:19221045-19221064 | None:intergenic | 40.0% |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | chr3.2:19219104-19219123 | MS.gene60437:CDS | 40.0% |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | chr3.2:19219587-19219606 | None:intergenic | 40.0% |
| ! | CTTGAATGTGGACTATTGTG+GGG | - | chr3.2:19220361-19220380 | MS.gene60437:intron | 40.0% |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr3.2:19218312-19218331 | MS.gene60437:intron | 40.0% |
| ! | GGTGCCTTTTACTTCTTCTT+TGG | + | chr3.2:19220611-19220630 | None:intergenic | 40.0% |
| ! | GTAGAACAGGCCTTTTTCTT+TGG | + | chr3.2:19221082-19221101 | None:intergenic | 40.0% |
| ! | TAACCCATGGATTGTTCTCA+AGG | + | chr3.2:19219807-19219826 | None:intergenic | 40.0% |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | chr3.2:19218671-19218690 | MS.gene60437:intron | 40.0% |
| ! | TGCATACAACCTACCCTTTT+TGG | + | chr3.2:19220465-19220484 | None:intergenic | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr3.2:19218677-19218696 | MS.gene60437:intron | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr3.2:19218682-19218701 | MS.gene60437:intron | 40.0% |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr3.2:19219601-19219620 | MS.gene60437:intron | 40.0% |
| !! | TTATTTCTGCTTTGGCGATG+TGG | - | chr3.2:19219385-19219404 | MS.gene60437:CDS | 40.0% |
| !! | TTTCCTACTTTGGCTTGTTC+AGG | + | chr3.2:19221625-19221644 | None:intergenic | 40.0% |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | chr3.2:19218968-19218987 | None:intergenic | 40.0% |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr3.2:19219446-19219465 | MS.gene60437:CDS | 40.0% |
| AAGTGCTAGCCAAAAAGACG+TGG | - | chr3.2:19221114-19221133 | MS.gene60437:CDS | 45.0% | |
| AGAAAGAGGTTCAGTGTCTG+CGG | + | chr3.2:19220693-19220712 | None:intergenic | 45.0% | |
| AGACGTAGGAGAAGGATCAA+AGG | - | chr3.2:19221048-19221067 | MS.gene60437:CDS | 45.0% | |
| AGACGTGGTAGAAGGATCAA+AGG | - | chr3.2:19221231-19221250 | MS.gene60437:CDS | 45.0% | |
| AGATGTGGGAGAAGGATCAA+AGG | - | chr3.2:19220946-19220965 | MS.gene60437:CDS | 45.0% | |
| AGCCAAAAAGACGTGGTAGA+AGG | - | chr3.2:19221223-19221242 | MS.gene60437:CDS | 45.0% | |
| AGCTAGAAAGATGTGGGAGA+AGG | - | chr3.2:19220938-19220957 | MS.gene60437:CDS | 45.0% | |
| AGTACGCGTCATTGTCTATG+TGG | - | chr3.2:19219647-19219666 | MS.gene60437:intron | 45.0% | |
| ATCCTTCTCCCATGTCTTTC+TGG | + | chr3.2:19220841-19220860 | None:intergenic | 45.0% | |
| ATCGTTCTCCCACGTCTATT+TGG | + | chr3.2:19220739-19220758 | None:intergenic | 45.0% | |
| ATGCGTGACGATTTCTTTGG+TGG | - | chr3.2:19219868-19219887 | MS.gene60437:CDS | 45.0% | |
| CAAAGGGAGGCAAATCAAAG+AGG | - | chr3.2:19220759-19220778 | MS.gene60437:intron | 45.0% | |
| CAGCAATTCAGTGTTCATGC+AGG | - | chr3.2:19220259-19220278 | MS.gene60437:intron | 45.0% | |
| CAGCCAGACAAAATCACCAA+CGG | + | chr3.2:19219452-19219471 | None:intergenic | 45.0% | |
| CATAGACAATGACGCGTACT+TGG | + | chr3.2:19219647-19219666 | None:intergenic | 45.0% | |
| CATGCTAGCCAAAAAGACGT+GGG | - | chr3.2:19221217-19221236 | MS.gene60437:CDS | 45.0% | |
| CCAGTAACAGTTGGAACTTC+AGG | + | chr3.2:19220533-19220552 | None:intergenic | 45.0% | |
| CCTGAAGTTCCAACTGTTAC+TGG | - | chr3.2:19220530-19220549 | MS.gene60437:intron | 45.0% | |
| CCTGATAGCCAGAAAGACAT+GGG | - | chr3.2:19220830-19220849 | MS.gene60437:intron | 45.0% | |
| GACGTAGGAGAAGGATCAAA+GGG | - | chr3.2:19221049-19221068 | MS.gene60437:CDS | 45.0% | |
| GACGTGGTAGAAGGATCAAA+GGG | - | chr3.2:19221232-19221251 | MS.gene60437:CDS | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr3.2:19218516-19218535 | MS.gene60437:CDS | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr3.2:19218531-19218550 | MS.gene60437:CDS | 45.0% | |
| GATGTGGGAGAAGGATCAAA+GGG | - | chr3.2:19220947-19220966 | MS.gene60437:CDS | 45.0% | |
| GCAGTTGTAACAGATGGTGA+TGG | - | chr3.2:19219590-19219609 | MS.gene60437:intron | 45.0% | |
| GGGAGGAAACCCAAAGAAAA+AGG | - | chr3.2:19221069-19221088 | MS.gene60437:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3.2:19218573-19218592 | MS.gene60437:CDS | 45.0% | |
| TAGCTATCATGCTGAGACGT+GGG | + | chr3.2:19220923-19220942 | None:intergenic | 45.0% | |
| TAGGTTGTATGCAGATGTGC+TGG | - | chr3.2:19220472-19220491 | MS.gene60437:intron | 45.0% | |
| TAGTCAAAGCGAGGTTGTCA+AGG | - | chr3.2:19221440-19221459 | MS.gene60437:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr3.2:19218246-19218265 | MS.gene60437:CDS | 45.0% | |
| TCCCACGTCTATTTGGCTAT+CGG | + | chr3.2:19220732-19220751 | None:intergenic | 45.0% | |
| TGATTACGGTTCTACGGATG+TGG | - | chr3.2:19218206-19218225 | MS.gene60437:CDS | 45.0% | |
| TGGACGAAAAAGGCGAAGAT+TGG | - | chr3.2:19220335-19220354 | MS.gene60437:intron | 45.0% | |
| TGGATAGCATGCTGAGACAT+GGG | + | chr3.2:19221025-19221044 | None:intergenic | 45.0% | |
| TGGCTAGCATGCTAAGACAT+GGG | + | chr3.2:19221208-19221227 | None:intergenic | 45.0% | |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr3.2:19219613-19219632 | MS.gene60437:intron | 45.0% | |
| TTCTTAGTGAACCCAACACC+AGG | + | chr3.2:19219182-19219201 | None:intergenic | 45.0% | |
| TTGAGACATAGGCGTAGAAC+AGG | + | chr3.2:19221095-19221114 | None:intergenic | 45.0% | |
| TTGGATAGCATGCTGAGACA+TGG | + | chr3.2:19221026-19221045 | None:intergenic | 45.0% | |
| TTGGCAATGGATCACGTATG+TGG | + | chr3.2:19220571-19220590 | None:intergenic | 45.0% | |
| TTGGCTAGCATGCTAAGACA+TGG | + | chr3.2:19221209-19221228 | None:intergenic | 45.0% | |
| TTGTATGCAGATGTGCTGGA+TGG | - | chr3.2:19220476-19220495 | MS.gene60437:intron | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr3.2:19219330-19219349 | None:intergenic | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr3.2:19218582-19218601 | MS.gene60437:CDS | 45.0% |
| ! | AGTGTCTGCGGAACATTTTC+TGG | + | chr3.2:19220681-19220700 | None:intergenic | 45.0% |
| ! | ATCCTTCTCCCACGTCTTTT+TGG | + | chr3.2:19221330-19221349 | None:intergenic | 45.0% |
| ! | ATCCTTCTGCCACGTCTTTT+TGG | + | chr3.2:19221126-19221145 | None:intergenic | 45.0% |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr3.2:19219031-19219050 | None:intergenic | 45.0% |
| ! | GGAGCACCTTTACACTTCAT+TGG | + | chr3.2:19220590-19220609 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | chr3.2:19219038-19219057 | None:intergenic | 45.0% |
| !! | ATTTGGTGCTGCATTGGTGA+TGG | - | chr3.2:19219496-19219515 | MS.gene60437:CDS | 45.0% |
| !! | CAGATGGTGATGGTTCTATG+AGG | - | chr3.2:19219600-19219619 | MS.gene60437:intron | 45.0% |
| !! | TGCAGGGAAGTGTCCAAAAA+GGG | - | chr3.2:19220449-19220468 | MS.gene60437:intron | 45.0% |
| !! | TGGCTAGCACTTTGAGACAT+AGG | + | chr3.2:19221106-19221125 | None:intergenic | 45.0% |
| !! | TTGCAGGGAAGTGTCCAAAA+AGG | - | chr3.2:19220448-19220467 | MS.gene60437:intron | 45.0% |
| !!! | TTGAAGAGTTTTGGGGGACT+TGG | - | chr3.2:19219768-19219787 | MS.gene60437:intron | 45.0% |
| AAAGGGAGGTAGTCAAAGCG+AGG | - | chr3.2:19221431-19221450 | MS.gene60437:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr3.2:19219167-19219186 | MS.gene60437:CDS | 50.0% | |
| AGACGTGGCAGAAGGATCAA+AGG | - | chr3.2:19221129-19221148 | MS.gene60437:CDS | 50.0% | |
| AGACGTGGGAGAACGATCAA+AGG | - | chr3.2:19220742-19220761 | MS.gene60437:intron | 50.0% | |
| AGACGTGGGAGAAGGATCAA+AGG | - | chr3.2:19221333-19221352 | MS.gene60437:CDS | 50.0% | |
| AGCCAAAAAGACGTGGCAGA+AGG | - | chr3.2:19221121-19221140 | MS.gene60437:CDS | 50.0% | |
| AGCCAAAAAGACGTGGGAGA+AGG | - | chr3.2:19221325-19221344 | MS.gene60437:CDS | 50.0% | |
| AGCCAGAAAGACATGGGAGA+AGG | - | chr3.2:19220836-19220855 | MS.gene60437:intron | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr3.2:19219168-19219187 | MS.gene60437:CDS | 50.0% | |
| AGTCTCCTTGATGCCCTAAC+AGG | + | chr3.2:19221679-19221698 | None:intergenic | 50.0% | |
| AGTGAAGGCGATGAACGTGA+AGG | - | chr3.2:19218507-19218526 | MS.gene60437:CDS | 50.0% | |
| CAGATGAGTTGTCAGCACAG+GGG | + | chr3.2:19220052-19220071 | None:intergenic | 50.0% | |
| CCACCACTCCCAACAATGAT+CGG | + | chr3.2:19218252-19218271 | None:intergenic | 50.0% | |
| CCCACGTCTATTTGGCTATC+GGG | + | chr3.2:19220731-19220750 | None:intergenic | 50.0% | |
| CCCGATAGCCAAATAGACGT+GGG | - | chr3.2:19220728-19220747 | MS.gene60437:intron | 50.0% | |
| CGCGTCATTGTCTATGTGGT+TGG | - | chr3.2:19219651-19219670 | MS.gene60437:intron | 50.0% | |
| CTAGCTATCATGCTGAGACG+TGG | + | chr3.2:19220924-19220943 | None:intergenic | 50.0% | |
| GAAAAGAAGAACGCGTGGTG+AGG | - | chr3.2:19221651-19221670 | MS.gene60437:CDS | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr3.2:19218534-19218553 | MS.gene60437:CDS | 50.0% | |
| GACGTCTCACTCGTACAAAG+TGG | - | chr3.2:19218931-19218950 | MS.gene60437:intron | 50.0% | |
| GACGTGGCAGAAGGATCAAA+GGG | - | chr3.2:19221130-19221149 | MS.gene60437:CDS | 50.0% | |
| GACGTGGGAGAACGATCAAA+GGG | - | chr3.2:19220743-19220762 | MS.gene60437:intron | 50.0% | |
| GACGTGGGAGAAGGATCAAA+GGG | - | chr3.2:19221334-19221353 | MS.gene60437:CDS | 50.0% | |
| GATTTAGGAGGCCAAAGTCG+TGG | - | chr3.2:19221781-19221800 | MS.gene60437:CDS | 50.0% | |
| GCAGATGAGTTGTCAGCACA+GGG | + | chr3.2:19220053-19220072 | None:intergenic | 50.0% | |
| GCATGCTAGCCAAAAAGACG+TGG | - | chr3.2:19221216-19221235 | MS.gene60437:CDS | 50.0% | |
| GCCTGATAGCCAGAAAGACA+TGG | - | chr3.2:19220829-19220848 | MS.gene60437:intron | 50.0% | |
| GGATACATGGTGGCTCAGAA+GGG | - | chr3.2:19219149-19219168 | MS.gene60437:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr3.2:19218552-19218571 | MS.gene60437:CDS | 50.0% | |
| GTAGGAGAAGGATCAAAGGG+AGG | - | chr3.2:19221052-19221071 | MS.gene60437:CDS | 50.0% | |
| GTGGCAGAAGGATTAAAGGG+AGG | - | chr3.2:19221417-19221436 | MS.gene60437:CDS | 50.0% | |
| GTGGTAGAAGGATCAAAGGG+AGG | - | chr3.2:19221235-19221254 | MS.gene60437:CDS | 50.0% | |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr3.2:19219616-19219635 | MS.gene60437:intron | 50.0% | |
| TGAGACATGGGCACAGAAAG+AGG | + | chr3.2:19220707-19220726 | None:intergenic | 50.0% | |
| TGGCTAGCATGCTGAGACAT+GGG | + | chr3.2:19221310-19221329 | None:intergenic | 50.0% | |
| TGGCTATCAGGCTGAGACAT+GGG | + | chr3.2:19220821-19220840 | None:intergenic | 50.0% | |
| TTGGCTAGCATGCTGAGACA+TGG | + | chr3.2:19221311-19221330 | None:intergenic | 50.0% | |
| ! | AGGTGTTGCACTGAGTGTGA+AGG | - | chr3.2:19220146-19220165 | MS.gene60437:CDS | 50.0% |
| !! | CCCATGTCTTTCTGGCTATC+AGG | + | chr3.2:19220833-19220852 | None:intergenic | 50.0% |
| !! | GGGAAGTGTCCAAAAAGGGT+AGG | - | chr3.2:19220453-19220472 | MS.gene60437:intron | 50.0% |
| !! | TGGCTAGCACTCTGAGACAT+AGG | + | chr3.2:19221391-19221410 | None:intergenic | 50.0% |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr3.2:19219604-19219623 | MS.gene60437:intron | 50.0% |
| !!! | AGTTTTGGGGGACTTGGTGA+GGG | - | chr3.2:19219774-19219793 | MS.gene60437:intron | 50.0% |
| CAGCACAGGGGATGAAAACC+TGG | + | chr3.2:19220040-19220059 | None:intergenic | 55.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr3.2:19218249-19218268 | MS.gene60437:intron | 55.0% | |
| CGCAGATGAGTTGTCAGCAC+AGG | + | chr3.2:19220054-19220073 | None:intergenic | 55.0% | |
| CTCGTACAAAGTGGCCAGCT+AGG | - | chr3.2:19218940-19218959 | MS.gene60437:intron | 55.0% | |
| CTGGCTATCAGGCTGAGACA+TGG | + | chr3.2:19220822-19220841 | None:intergenic | 55.0% | |
| GCCCGATAGCCAAATAGACG+TGG | - | chr3.2:19220727-19220746 | MS.gene60437:intron | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr3.2:19219161-19219180 | MS.gene60437:CDS | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr3.2:19219148-19219167 | MS.gene60437:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr3.2:19218537-19218556 | MS.gene60437:CDS | 55.0% | |
| GTGGCAGAAGGATCAAAGGG+AGG | - | chr3.2:19221133-19221152 | MS.gene60437:CDS | 55.0% | |
| GTGGGAGAACGATCAAAGGG+AGG | - | chr3.2:19220746-19220765 | MS.gene60437:intron | 55.0% | |
| GTGGGAGAAGGATCAAAGGG+AGG | - | chr3.2:19220950-19220969 | MS.gene60437:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr3.2:19219152-19219171 | MS.gene60437:CDS | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | chr3.2:19218957-19218976 | None:intergenic | 55.0% | |
| TGGCTATCGGGCTGAGACAT+GGG | + | chr3.2:19220719-19220738 | None:intergenic | 55.0% | |
| TTGGCTATCGGGCTGAGACA+TGG | + | chr3.2:19220720-19220739 | None:intergenic | 55.0% | |
| ! | AGGCACCTGTTAGGGCATCA+AGG | - | chr3.2:19221671-19221690 | MS.gene60437:CDS | 55.0% |
| !!! | GAGTTTTGGGGGACTTGGTG+AGG | - | chr3.2:19219773-19219792 | MS.gene60437:intron | 55.0% |
| ! | GCGTGGTGAGGCACCTGTTA+GGG | - | chr3.2:19221663-19221682 | MS.gene60437:CDS | 60.0% |
| ! | CGCGTGGTGAGGCACCTGTT+AGG | - | chr3.2:19221662-19221681 | MS.gene60437:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 19218159 | 19222045 | 19218159 | ID=MS.gene60437 |
| chr3.2 | mRNA | 19218159 | 19222045 | 19218159 | ID=MS.gene60437.t1;Parent=MS.gene60437 |
| chr3.2 | exon | 19220916 | 19222045 | 19220916 | ID=MS.gene60437.t1.exon1;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19220916 | 19222045 | 19220916 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19220021 | 19220256 | 19220021 | ID=MS.gene60437.t1.exon2;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19220021 | 19220256 | 19220021 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19219776 | 19219923 | 19219776 | ID=MS.gene60437.t1.exon3;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19219776 | 19219923 | 19219776 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19219336 | 19219540 | 19219336 | ID=MS.gene60437.t1.exon4;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19219336 | 19219540 | 19219336 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19219089 | 19219260 | 19219089 | ID=MS.gene60437.t1.exon5;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19219089 | 19219260 | 19219089 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19218716 | 19218780 | 19218716 | ID=MS.gene60437.t1.exon6;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19218716 | 19218780 | 19218716 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19218499 | 19218618 | 19218499 | ID=MS.gene60437.t1.exon7;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19218499 | 19218618 | 19218499 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19218372 | 19218416 | 19218372 | ID=MS.gene60437.t1.exon8;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19218372 | 19218416 | 19218372 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| chr3.2 | exon | 19218159 | 19218266 | 19218159 | ID=MS.gene60437.t1.exon9;Parent=MS.gene60437.t1 |
| chr3.2 | CDS | 19218159 | 19218266 | 19218159 | ID=cds.MS.gene60437.t1;Parent=MS.gene60437.t1 |
| Gene Sequence |
| Protein sequence |
