Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60456.t1 | XP_003599126.2 | 99.4 | 357 | 2 | 0 | 1 | 357 | 1 | 357 | 4.40E-196 | 693.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60456.t1 | E0X9N4 | 66.9 | 356 | 112 | 2 | 1 | 356 | 1 | 350 | 2.0e-125 | 450.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60456.t1 | G7IWL8 | 99.4 | 357 | 2 | 0 | 1 | 357 | 1 | 357 | 3.2e-196 | 693.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60456.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60456.t1 | MTR_3g028190 | 99.440 | 357 | 2 | 0 | 1 | 357 | 1 | 357 | 0.0 | 741 |
| MS.gene60456.t1 | MTR_3g028170 | 52.294 | 327 | 131 | 7 | 1 | 322 | 1 | 307 | 2.38e-100 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60456.t1 | AT3G08505 | 62.640 | 356 | 99 | 3 | 1 | 356 | 1 | 322 | 1.33e-164 | 462 |
| MS.gene60456.t1 | AT3G08505 | 62.640 | 356 | 99 | 3 | 1 | 356 | 1 | 322 | 1.33e-164 | 462 |
| MS.gene60456.t1 | AT3G08505 | 62.640 | 356 | 99 | 3 | 1 | 356 | 1 | 322 | 1.33e-164 | 462 |
Find 89 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATGTCTTTGGCAATTA+TGG | 0.200868 | 3.2:-19616518 | None:intergenic |
| TTACTTGAGCTTTGCCTTGT+AGG | 0.248432 | 3.2:-19615173 | None:intergenic |
| CAGAAAGGAGTTTGTGCTTA+TGG | 0.262469 | 3.2:+19614428 | MS.gene60456:CDS |
| GACAATGCTTGCATCCTTTC+CGG | 0.265577 | 3.2:+19614816 | MS.gene60456:CDS |
| GCGTATCGTGTATTAGAAAT+TGG | 0.271742 | 3.2:+19615011 | MS.gene60456:CDS |
| AGGTAGCTTTGCGTCATCTT+GGG | 0.329256 | 3.2:+19616479 | MS.gene60456:CDS |
| TTGTCGTTCCAAGTGTTATT+TGG | 0.331364 | 3.2:+19615113 | MS.gene60456:CDS |
| CGTAGTAGTAACCCAACATT+AGG | 0.336048 | 3.2:+19615034 | MS.gene60456:CDS |
| TTGTGCAGATTCTTGATTCC+AGG | 0.338822 | 3.2:-19614645 | None:intergenic |
| GAGGTAGCTTTGCGTCATCT+TGG | 0.340448 | 3.2:+19616478 | MS.gene60456:CDS |
| CTAACATGCATTTAAGTTGA+AGG | 0.345906 | 3.2:+19616633 | MS.gene60456:CDS |
| GTTGTATCACCAACATTATT+CGG | 0.348521 | 3.2:-19614301 | None:intergenic |
| ATTTGTTCATTTGCTGCTGC+TGG | 0.363377 | 3.2:+19614731 | MS.gene60456:CDS |
| CTTTGTAAGTTCTTTGCTCA+TGG | 0.382149 | 3.2:+19614226 | MS.gene60456:CDS |
| ATATGTTCTTCTCTTTCTTC+AGG | 0.386226 | 3.2:-19614839 | None:intergenic |
| TTGATTCCAGGCTTGTTCAC+TGG | 0.388041 | 3.2:-19614633 | None:intergenic |
| GGCGAAGGAAACTGCCCTTT+CGG | 0.397193 | 3.2:+19615817 | MS.gene60456:CDS |
| GGATGTTAATAGCACATTGC+GGG | 0.414993 | 3.2:+19615060 | MS.gene60456:CDS |
| AGAGAGAAACCTGATGTCTT+TGG | 0.415002 | 3.2:-19616527 | None:intergenic |
| TGATTCCAGGCTTGTTCACT+GGG | 0.416070 | 3.2:-19614632 | None:intergenic |
| TTCTTCCCAGTGAACAAGCC+TGG | 0.423135 | 3.2:+19614627 | MS.gene60456:CDS |
| GTTTCAGAATCGGCTGTACT+TGG | 0.435930 | 3.2:+19614536 | MS.gene60456:CDS |
| ACGGCAGCTGAGCGTAAGTT+TGG | 0.437819 | 3.2:+19614959 | MS.gene60456:CDS |
| CTGCACAACTTGACTTCCTA+AGG | 0.447330 | 3.2:+19614660 | MS.gene60456:CDS |
| GTGCTTATGGTAGTCGCTGC+AGG | 0.448946 | 3.2:+19614441 | MS.gene60456:CDS |
| CTCATGGAGCGTGTCTGAAA+GGG | 0.457791 | 3.2:+19614242 | MS.gene60456:CDS |
| TGAAACAAGGGGCTGGTGTT+CGG | 0.458109 | 3.2:-19614519 | None:intergenic |
| TAACATCCATCCCTAATGTT+GGG | 0.466091 | 3.2:-19615045 | None:intergenic |
| CCAGCCCCTTGTTTCAGAAT+CGG | 0.469602 | 3.2:+19614526 | MS.gene60456:CDS |
| CGTCATCTTGGGGCTGCAGA+TGG | 0.471622 | 3.2:+19616490 | MS.gene60456:CDS |
| TGTTCGGTTATTGAAGAAGA+TGG | 0.473750 | 3.2:-19614503 | None:intergenic |
| GGAAGATGATGTTGTTCAAT+CGG | 0.474976 | 3.2:+19614682 | MS.gene60456:CDS |
| CCATAATTGCCAAAGACATC+AGG | 0.475198 | 3.2:+19616518 | MS.gene60456:CDS |
| GAACAACATCATCTTCCCTT+AGG | 0.486955 | 3.2:-19614676 | None:intergenic |
| AATACCCGAGTTACATTGAA+TGG | 0.487693 | 3.2:+19614560 | MS.gene60456:CDS |
| TTAACATCCATCCCTAATGT+TGG | 0.488690 | 3.2:-19615046 | None:intergenic |
| TAAGATAGCTTGCGACAGAT+AGG | 0.489220 | 3.2:-19615088 | None:intergenic |
| CGGTACCAGCTGCTTCTACA+AGG | 0.490373 | 3.2:+19615837 | MS.gene60456:CDS |
| GCAGCAGCAAATGAACAAAT+CGG | 0.492646 | 3.2:-19614728 | None:intergenic |
| ACATGATGCCATCAGGTTGT+CGG | 0.519944 | 3.2:+19616601 | MS.gene60456:intron |
| GCTCATGGAGCGTGTCTGAA+AGG | 0.521682 | 3.2:+19614241 | MS.gene60456:CDS |
| TCTCTTTCTTCAGGCCGGAA+AGG | 0.522386 | 3.2:-19614830 | None:intergenic |
| AACTTAAATGCATGTTAGCA+AGG | 0.524697 | 3.2:-19616628 | None:intergenic |
| GTTCTTCTCTTTCTTCAGGC+CGG | 0.528004 | 3.2:-19614835 | None:intergenic |
| GAACAAATCGGAAGCTCAGA+AGG | 0.538088 | 3.2:-19614716 | None:intergenic |
| ATTTACCTTGTAGAAGCAGC+TGG | 0.539288 | 3.2:-19615842 | None:intergenic |
| TACAGCCGATTCTGAAACAA+GGG | 0.542302 | 3.2:-19614531 | None:intergenic |
| GAACAATGTCCTCATGTACA+TGG | 0.543220 | 3.2:+19614770 | MS.gene60456:CDS |
| CAACACCATTCAATGTAACT+CGG | 0.544359 | 3.2:-19614565 | None:intergenic |
| GTAGTAGTAACCCAACATTA+GGG | 0.548465 | 3.2:+19615035 | MS.gene60456:CDS |
| GCGTGTTCTTTCAAAGCCTA+CGG | 0.552472 | 3.2:+19614940 | MS.gene60456:CDS |
| GGTAGCTTTGCGTCATCTTG+GGG | 0.557694 | 3.2:+19616480 | MS.gene60456:CDS |
| TGTTCACTGGGAAGAACAAA+GGG | 0.561359 | 3.2:-19614620 | None:intergenic |
| CCGATTCTGAAACAAGGGGC+TGG | 0.563910 | 3.2:-19614526 | None:intergenic |
| TAGAAGCAGCTGGTACCGAA+AGG | 0.585374 | 3.2:-19615832 | None:intergenic |
| TATCACCAACATTATTCGGA+GGG | 0.587301 | 3.2:-19614297 | None:intergenic |
| ATATCGTGATGGCCGTCTTG+AGG | 0.591471 | 3.2:+19616456 | MS.gene60456:CDS |
| AGAAGCAGCTGGTACCGAAA+GGG | 0.591507 | 3.2:-19615831 | None:intergenic |
| CAAGCATTGTCTTCCACATG+AGG | 0.592492 | 3.2:-19614804 | None:intergenic |
| TTGTTCACTGGGAAGAACAA+AGG | 0.593124 | 3.2:-19614621 | None:intergenic |
| ATAATTTCGCCATGTCAAAG+AGG | 0.593887 | 3.2:+19613175 | None:intergenic |
| ATCACCAACATTATTCGGAG+GGG | 0.593920 | 3.2:-19614296 | None:intergenic |
| TAGTAACCCAACATTAGGGA+TGG | 0.597655 | 3.2:+19615039 | MS.gene60456:CDS |
| AACACCATTCAATGTAACTC+GGG | 0.604302 | 3.2:-19614564 | None:intergenic |
| TATTGAAGAAGATGGAGTAG+AGG | 0.608961 | 3.2:-19614495 | None:intergenic |
| GTAGCATACCAAATAACACT+TGG | 0.613633 | 3.2:-19615121 | None:intergenic |
| AAGCATTGTCTTCCACATGA+GGG | 0.614385 | 3.2:-19614803 | None:intergenic |
| TCGTGATGGCCGTCTTGAGG+AGG | 0.617371 | 3.2:+19616459 | MS.gene60456:CDS |
| GGAGATTTATGCCCCTCATG+TGG | 0.626843 | 3.2:+19614791 | MS.gene60456:CDS |
| GTATCACCAACATTATTCGG+AGG | 0.630350 | 3.2:-19614298 | None:intergenic |
| AGCATTGTCTTCCACATGAG+GGG | 0.631001 | 3.2:-19614802 | None:intergenic |
| GGAAATCATTGATACCTACA+AGG | 0.631452 | 3.2:+19615159 | MS.gene60456:CDS |
| AACTTACGCTCAGCTGCCGT+AGG | 0.632534 | 3.2:-19614956 | None:intergenic |
| TGCACAACTTGACTTCCTAA+GGG | 0.633433 | 3.2:+19614661 | MS.gene60456:CDS |
| TGAGGACATTGTTCCCCTCG+TGG | 0.637218 | 3.2:-19614761 | None:intergenic |
| GTACAGCCGATTCTGAAACA+AGG | 0.638170 | 3.2:-19614532 | None:intergenic |
| CTGCTGGAAACTGTCCACGA+GGG | 0.638932 | 3.2:+19614747 | MS.gene60456:CDS |
| TGCTGGAAACTGTCCACGAG+GGG | 0.639094 | 3.2:+19614748 | MS.gene60456:CDS |
| CATAAATCTCCATGTACATG+AGG | 0.639832 | 3.2:-19614779 | None:intergenic |
| CTAATACACGATACGCAGAA+CGG | 0.640856 | 3.2:-19615004 | None:intergenic |
| TCATGGAGCGTGTCTGAAAG+GGG | 0.647946 | 3.2:+19614243 | MS.gene60456:CDS |
| TCTATCTTACCTCTTTGACA+TGG | 0.648394 | 3.2:-19613184 | None:intergenic |
| TTGCAGCATGCATATCGTGA+TGG | 0.670081 | 3.2:+19616445 | MS.gene60456:intron |
| AAATAAGCAAAAGCATCTCG+AGG | 0.674626 | 3.2:+19614874 | MS.gene60456:CDS |
| GCTGCTGGAAACTGTCCACG+AGG | 0.694625 | 3.2:+19614746 | MS.gene60456:CDS |
| TGGATGTTAATAGCACATTG+CGG | 0.695653 | 3.2:+19615059 | MS.gene60456:CDS |
| GCTTTGAAAGAACACGCTCG+AGG | 0.700611 | 3.2:-19614934 | None:intergenic |
| ACAGCCGATTCTGAAACAAG+GGG | 0.720447 | 3.2:-19614530 | None:intergenic |
| GCAAAGCTACCTCCTCAAGA+CGG | 0.724386 | 3.2:-19616468 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAATTTTAAATATACTT+GGG | - | chr3.2:19616296-19616315 | None:intergenic | 10.0% |
| !!! | GATTTTTTTATTGTTTATTT+TGG | + | chr3.2:19613403-19613422 | MS.gene60456:intron | 10.0% |
| !!! | TGAAAAATTTTAAATATACT+TGG | - | chr3.2:19616297-19616316 | None:intergenic | 10.0% |
| !!! | TTCTTGATTATTTTTTATAT+GGG | + | chr3.2:19613247-19613266 | MS.gene60456:intron | 10.0% |
| !!! | TTTCTTGATTATTTTTTATA+TGG | + | chr3.2:19613246-19613265 | MS.gene60456:intron | 10.0% |
| !! | AAGTATAACATAAACTAATT+AGG | - | chr3.2:19616423-19616442 | None:intergenic | 15.0% |
| !! | ACTATTATGTTTCTTATATT+AGG | - | chr3.2:19615417-19615436 | None:intergenic | 15.0% |
| !!! | AATAAACTAAAAACAACTTT+TGG | + | chr3.2:19615610-19615629 | MS.gene60456:intron | 15.0% |
| !!! | TCTTGATTATTTTTTATATG+GGG | + | chr3.2:19613248-19613267 | MS.gene60456:intron | 15.0% |
| !! | AAACATCATAATTAAACGTT+AGG | - | chr3.2:19616343-19616362 | None:intergenic | 20.0% |
| !! | AAATTCAAAAGCAATAAAAG+TGG | - | chr3.2:19613860-19613879 | None:intergenic | 20.0% |
| !! | ATAACTCAATAACCATAAAT+CGG | - | chr3.2:19614349-19614368 | None:intergenic | 20.0% |
| !! | ATATTAGATCATGAATCAAT+TGG | - | chr3.2:19615249-19615268 | None:intergenic | 20.0% |
| !! | TTATATCTGAGTTTATATAC+TGG | - | chr3.2:19615691-19615710 | None:intergenic | 20.0% |
| !! | TTGATTAGAATTCAGAAATT+AGG | + | chr3.2:19613591-19613610 | MS.gene60456:intron | 20.0% |
| !! | TTGATTATAACTCAGAAATT+AGG | + | chr3.2:19613361-19613380 | MS.gene60456:intron | 20.0% |
| !! | TTTGGAAAGAAAAGTAAAAT+GGG | - | chr3.2:19615913-19615932 | None:intergenic | 20.0% |
| !!! | AAAAAGTCTCTAGAATAAAA+AGG | - | chr3.2:19614002-19614021 | None:intergenic | 20.0% |
| !!! | AAAAGTCTCTAGAATAAAAA+GGG | - | chr3.2:19614001-19614020 | None:intergenic | 20.0% |
| !!! | AAACAATTGAAATTTGTTCA+CGG | - | chr3.2:19616033-19616052 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | chr3.2:19615452-19615471 | None:intergenic | 20.0% |
| !!! | ATTAGATATGTTTTTGAAGT+AGG | + | chr3.2:19613429-19613448 | MS.gene60456:intron | 20.0% |
| !!! | CTATACGATAATTAAAGTTT+TGG | - | chr3.2:19615931-19615950 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | - | chr3.2:19615451-19615470 | None:intergenic | 20.0% |
| !!! | TTATTGCTTTTGAATTTTCA+CGG | + | chr3.2:19613863-19613882 | MS.gene60456:intron | 20.0% |
| !!! | TTCAAATTGTTTTCAAATAG+AGG | + | chr3.2:19616181-19616200 | MS.gene60456:intron | 20.0% |
| !!! | TTTATTCTAGAGACTTTTTA+AGG | + | chr3.2:19614003-19614022 | MS.gene60456:intron | 20.0% |
| !!! | TTTTGCTGAAATGTTTATTT+TGG | + | chr3.2:19615743-19615762 | MS.gene60456:intron | 20.0% |
| !!! | TTTTGGAAAGAAAAGTAAAA+TGG | - | chr3.2:19615914-19615933 | None:intergenic | 20.0% |
| ! | AAAAGAAAAGAAAATCCAGA+TGG | - | chr3.2:19613572-19613591 | None:intergenic | 25.0% |
| ! | AAAGAAAAGAAAATCCAGAT+GGG | - | chr3.2:19613571-19613590 | None:intergenic | 25.0% |
| ! | AAGTTCGGTAAATAATTATC+CGG | + | chr3.2:19613648-19613667 | MS.gene60456:intron | 25.0% |
| ! | ATCATAATTAAACGTTAGGT+AGG | - | chr3.2:19616339-19616358 | None:intergenic | 25.0% |
| ! | ATGATATAGCTTATTGAAGT+AGG | + | chr3.2:19613674-19613693 | MS.gene60456:intron | 25.0% |
| ! | ATGCTGAATAAGTTGTTATA+AGG | + | chr3.2:19615310-19615329 | MS.gene60456:intron | 25.0% |
| ! | ATGTATTAAGTTAGCGAAAT+TGG | - | chr3.2:19616585-19616604 | None:intergenic | 25.0% |
| ! | ATTTGTTCAATACCATTTGT+AGG | + | chr3.2:19615767-19615786 | MS.gene60456:intron | 25.0% |
| ! | CAATAAGCTATATCATAATC+CGG | - | chr3.2:19613670-19613689 | None:intergenic | 25.0% |
| ! | GCATGATTAAAATGAATTCA+TGG | - | chr3.2:19614066-19614085 | None:intergenic | 25.0% |
| ! | TATGCATATGTTTATTTGAG+CGG | + | chr3.2:19613791-19613810 | MS.gene60456:intron | 25.0% |
| ! | TCATAATTAAACGTTAGGTA+GGG | - | chr3.2:19616338-19616357 | None:intergenic | 25.0% |
| ! | TGCTGAATAAGTTGTTATAA+GGG | + | chr3.2:19615311-19615330 | MS.gene60456:intron | 25.0% |
| !! | AATGTCATAAAGCATCAATT+GGG | - | chr3.2:19615964-19615983 | None:intergenic | 25.0% |
| !! | AATTGTCTTTTGAATCTTTC+AGG | + | chr3.2:19614200-19614219 | MS.gene60456:intron | 25.0% |
| !! | ACATAAAACTATCTAAGGTT+TGG | - | chr3.2:19615275-19615294 | None:intergenic | 25.0% |
| !! | AGTGTTTTCATAAGTTATCT+TGG | + | chr3.2:19615575-19615594 | MS.gene60456:intron | 25.0% |
| !! | ATATGCACATTTTATCAGAA+AGG | + | chr3.2:19614413-19614432 | MS.gene60456:CDS | 25.0% |
| !! | ATTGTCTTTTGAATCTTTCA+GGG | + | chr3.2:19614201-19614220 | MS.gene60456:intron | 25.0% |
| !! | ATTGTGAATTTTCTCATGAT+TGG | + | chr3.2:19614269-19614288 | MS.gene60456:CDS | 25.0% |
| !! | TAATGTCATAAAGCATCAAT+TGG | - | chr3.2:19615965-19615984 | None:intergenic | 25.0% |
| !!! | AAAGTCTCTAGAATAAAAAG+GGG | - | chr3.2:19614000-19614019 | None:intergenic | 25.0% |
| !!! | GAGTTTTTTTTTTGCAAGTT+CGG | + | chr3.2:19613633-19613652 | MS.gene60456:intron | 25.0% |
| !!! | TTGTTTTTTCTTCAATCATG+AGG | + | chr3.2:19613317-19613336 | MS.gene60456:intron | 25.0% |
| AAAAGTAAAATGGGTCAAAC+AGG | - | chr3.2:19615904-19615923 | None:intergenic | 30.0% | |
| AAAGTAAAATGGGTCAAACA+GGG | - | chr3.2:19615903-19615922 | None:intergenic | 30.0% | |
| AACTTAAATGCATGTTAGCA+AGG | - | chr3.2:19616631-19616650 | None:intergenic | 30.0% | |
| AAGACATAAATAGATGCTGT+GGG | - | chr3.2:19615210-19615229 | None:intergenic | 30.0% | |
| AAGTTAGCGAAATTGGAAAA+AGG | - | chr3.2:19616578-19616597 | None:intergenic | 30.0% | |
| AATTTGATATTTCTCCCATC+TGG | + | chr3.2:19613554-19613573 | MS.gene60456:intron | 30.0% | |
| ACAACTTATTCAGCATAGTA+TGG | - | chr3.2:19615306-19615325 | None:intergenic | 30.0% | |
| ATATGTTCTTCTCTTTCTTC+AGG | - | chr3.2:19614842-19614861 | None:intergenic | 30.0% | |
| ATCGACATTAATCCTTATCA+TGG | - | chr3.2:19614029-19614048 | None:intergenic | 30.0% | |
| CACAGACATAAAACTATCTA+AGG | - | chr3.2:19615280-19615299 | None:intergenic | 30.0% | |
| CATAATTAAACGTTAGGTAG+GGG | - | chr3.2:19616337-19616356 | None:intergenic | 30.0% | |
| CTTTGGTCTCTATATGAAAA+AGG | - | chr3.2:19615994-19616013 | None:intergenic | 30.0% | |
| GCAAACTCAATTTAGTACTT+TGG | - | chr3.2:19616011-19616030 | None:intergenic | 30.0% | |
| GCTGAATAAGTTGTTATAAG+GGG | + | chr3.2:19615312-19615331 | MS.gene60456:intron | 30.0% | |
| GTTGTATCACCAACATTATT+CGG | - | chr3.2:19614304-19614323 | None:intergenic | 30.0% | |
| TAATGACTGCAACTTATTTC+TGG | + | chr3.2:19616077-19616096 | MS.gene60456:intron | 30.0% | |
| TGCTACAAGTGAAGAAAAAA+TGG | + | chr3.2:19615138-19615157 | MS.gene60456:CDS | 30.0% | |
| ! | CATGGTTAGAAGGTTTTTAA+CGG | + | chr3.2:19614108-19614127 | MS.gene60456:intron | 30.0% |
| AAACATGTGTGAGACTGTTT+GGG | - | chr3.2:19615665-19615684 | None:intergenic | 35.0% | |
| AAAGGATAAAGATGAGAACC+AGG | - | chr3.2:19616560-19616579 | None:intergenic | 35.0% | |
| AACACCATTCAATGTAACTC+GGG | - | chr3.2:19614567-19614586 | None:intergenic | 35.0% | |
| AATACCCGAGTTACATTGAA+TGG | + | chr3.2:19614560-19614579 | MS.gene60456:CDS | 35.0% | |
| ACCATTGATATGCATGTGTA+GGG | + | chr3.2:19615353-19615372 | MS.gene60456:intron | 35.0% | |
| ACTTAATACATGATGCCATC+AGG | + | chr3.2:19616594-19616613 | MS.gene60456:intron | 35.0% | |
| AGCAAAAAGCTAGACACATT+AGG | - | chr3.2:19615730-19615749 | None:intergenic | 35.0% | |
| ATCTTGGAAATATCTCTCCT+CGG | + | chr3.2:19613759-19613778 | MS.gene60456:intron | 35.0% | |
| ATTGAAGTAGGAACACAATC+AGG | + | chr3.2:19613686-19613705 | MS.gene60456:intron | 35.0% | |
| CAACACCATTCAATGTAACT+CGG | - | chr3.2:19614568-19614587 | None:intergenic | 35.0% | |
| CATAAATCTCCATGTACATG+AGG | - | chr3.2:19614782-19614801 | None:intergenic | 35.0% | |
| CTTTGTAAGTTCTTTGCTCA+TGG | + | chr3.2:19614226-19614245 | MS.gene60456:CDS | 35.0% | |
| GAAGACATAAATAGATGCTG+TGG | - | chr3.2:19615211-19615230 | None:intergenic | 35.0% | |
| GCAAAAAGCTAGACACATTA+GGG | - | chr3.2:19615729-19615748 | None:intergenic | 35.0% | |
| GCAATCAATTGACCTACAAA+TGG | - | chr3.2:19615782-19615801 | None:intergenic | 35.0% | |
| GCGTATCGTGTATTAGAAAT+TGG | + | chr3.2:19615011-19615030 | MS.gene60456:CDS | 35.0% | |
| GGAAATCATTGATACCTACA+AGG | + | chr3.2:19615159-19615178 | MS.gene60456:CDS | 35.0% | |
| GGAAGATGATGTTGTTCAAT+CGG | + | chr3.2:19614682-19614701 | MS.gene60456:CDS | 35.0% | |
| GGTACTAGTATTATCAATCG+CGG | - | chr3.2:19616275-19616294 | None:intergenic | 35.0% | |
| GGTATAGCACTATAGTGTAA+GGG | + | chr3.2:19616221-19616240 | MS.gene60456:intron | 35.0% | |
| GTAGCATACCAAATAACACT+TGG | - | chr3.2:19615124-19615143 | None:intergenic | 35.0% | |
| GTAGTAGTAACCCAACATTA+GGG | + | chr3.2:19615035-19615054 | MS.gene60456:CDS | 35.0% | |
| TAAACATGTGTGAGACTGTT+TGG | - | chr3.2:19615666-19615685 | None:intergenic | 35.0% | |
| TAAAGATGAGAACCAGGATA+AGG | - | chr3.2:19616554-19616573 | None:intergenic | 35.0% | |
| TAACATCCATCCCTAATGTT+GGG | - | chr3.2:19615048-19615067 | None:intergenic | 35.0% | |
| TACCATTGATATGCATGTGT+AGG | + | chr3.2:19615352-19615371 | MS.gene60456:intron | 35.0% | |
| TATCACCAACATTATTCGGA+GGG | - | chr3.2:19614300-19614319 | None:intergenic | 35.0% | |
| TATTGAAGAAGATGGAGTAG+AGG | - | chr3.2:19614498-19614517 | None:intergenic | 35.0% | |
| TGAAATGTCCAACATAGAAG+AGG | - | chr3.2:19614326-19614345 | None:intergenic | 35.0% | |
| TGATACAACCTCTTCTATGT+TGG | + | chr3.2:19614315-19614334 | MS.gene60456:intron | 35.0% | |
| TGGATGTTAATAGCACATTG+CGG | + | chr3.2:19615059-19615078 | MS.gene60456:CDS | 35.0% | |
| TGTTCGGTTATTGAAGAAGA+TGG | - | chr3.2:19614506-19614525 | None:intergenic | 35.0% | |
| TTAACATCCATCCCTAATGT+TGG | - | chr3.2:19615049-19615068 | None:intergenic | 35.0% | |
| ! | ATGCTTTGTGTTTTCGTTTG+CGG | + | chr3.2:19614082-19614101 | MS.gene60456:intron | 35.0% |
| ! | TAGGCTCTAGTTGTTCTTTA+AGG | - | chr3.2:19616404-19616423 | None:intergenic | 35.0% |
| ! | TTGTCGTTCCAAGTGTTATT+TGG | + | chr3.2:19615113-19615132 | MS.gene60456:CDS | 35.0% |
| !! | AAATAAGCAAAAGCATCTCG+AGG | + | chr3.2:19614874-19614893 | MS.gene60456:CDS | 35.0% |
| !! | TTGGACATTTCACCGATTTA+TGG | + | chr3.2:19614334-19614353 | MS.gene60456:intron | 35.0% |
| !!! | GACTTTTTAAGGCCATGATA+AGG | + | chr3.2:19614014-19614033 | MS.gene60456:intron | 35.0% |
| !!! | GATTGCAAGCATTTTGACTT+TGG | + | chr3.2:19615796-19615815 | MS.gene60456:CDS | 35.0% |
| AGACATACATAGCGAGTGTT+TGG | - | chr3.2:19613933-19613952 | None:intergenic | 40.0% | |
| AGAGAGAAACCTGATGTCTT+TGG | - | chr3.2:19616530-19616549 | None:intergenic | 40.0% | |
| ATAAGAACAGTCTGCACACA+AGG | - | chr3.2:19614170-19614189 | None:intergenic | 40.0% | |
| ATCACCAACATTATTCGGAG+GGG | - | chr3.2:19614299-19614318 | None:intergenic | 40.0% | |
| ATTTACCTTGTAGAAGCAGC+TGG | - | chr3.2:19615845-19615864 | None:intergenic | 40.0% | |
| CAGAAAGGAGTTTGTGCTTA+TGG | + | chr3.2:19614428-19614447 | MS.gene60456:CDS | 40.0% | |
| CCATAATTGCCAAAGACATC+AGG | + | chr3.2:19616518-19616537 | MS.gene60456:CDS | 40.0% | |
| CCATTGATATGCATGTGTAG+GGG | + | chr3.2:19615354-19615373 | MS.gene60456:intron | 40.0% | |
| CCTGATGTCTTTGGCAATTA+TGG | - | chr3.2:19616521-19616540 | None:intergenic | 40.0% | |
| CGGTATAGCACTATAGTGTA+AGG | + | chr3.2:19616220-19616239 | MS.gene60456:intron | 40.0% | |
| CGTAGTAGTAACCCAACATT+AGG | + | chr3.2:19615034-19615053 | MS.gene60456:CDS | 40.0% | |
| CTAATACACGATACGCAGAA+CGG | - | chr3.2:19615007-19615026 | None:intergenic | 40.0% | |
| GAACAACATCATCTTCCCTT+AGG | - | chr3.2:19614679-19614698 | None:intergenic | 40.0% | |
| GAACAATGTCCTCATGTACA+TGG | + | chr3.2:19614770-19614789 | MS.gene60456:CDS | 40.0% | |
| GACATACATAGCGAGTGTTT+GGG | - | chr3.2:19613932-19613951 | None:intergenic | 40.0% | |
| GCAGCAGCAAATGAACAAAT+CGG | - | chr3.2:19614731-19614750 | None:intergenic | 40.0% | |
| GGATGTTAATAGCACATTGC+GGG | + | chr3.2:19615060-19615079 | MS.gene60456:CDS | 40.0% | |
| GTATCACCAACATTATTCGG+AGG | - | chr3.2:19614301-19614320 | None:intergenic | 40.0% | |
| TAAAATGGGTCAAACAGGGA+GGG | - | chr3.2:19615899-19615918 | None:intergenic | 40.0% | |
| TAGTAACCCAACATTAGGGA+TGG | + | chr3.2:19615039-19615058 | MS.gene60456:CDS | 40.0% | |
| TCTTGGAAATATCTCTCCTC+GGG | + | chr3.2:19613760-19613779 | MS.gene60456:intron | 40.0% | |
| TGCACAACTTGACTTCCTAA+GGG | + | chr3.2:19614661-19614680 | MS.gene60456:CDS | 40.0% | |
| TGTTCACTGGGAAGAACAAA+GGG | - | chr3.2:19614623-19614642 | None:intergenic | 40.0% | |
| TTACTTGAGCTTTGCCTTGT+AGG | - | chr3.2:19615176-19615195 | None:intergenic | 40.0% | |
| TTGTGCAGATTCTTGATTCC+AGG | - | chr3.2:19614648-19614667 | None:intergenic | 40.0% | |
| TTGTTCACTGGGAAGAACAA+AGG | - | chr3.2:19614624-19614643 | None:intergenic | 40.0% | |
| TTTGAGCGGTGAAAAACTTG+CGG | + | chr3.2:19613805-19613824 | MS.gene60456:intron | 40.0% | |
| TTTGCGGAAACATGGTTAGA+AGG | + | chr3.2:19614098-19614117 | MS.gene60456:intron | 40.0% | |
| ! | AAGCATTGTCTTCCACATGA+GGG | - | chr3.2:19614806-19614825 | None:intergenic | 40.0% |
| ! | AAGTTGCAGTCATTAGCTTC+AGG | - | chr3.2:19616072-19616091 | None:intergenic | 40.0% |
| ! | ATTTGTTCATTTGCTGCTGC+TGG | + | chr3.2:19614731-19614750 | MS.gene60456:CDS | 40.0% |
| ! | GAACACAATCAGGTTTCTAG+AGG | + | chr3.2:19613696-19613715 | MS.gene60456:intron | 40.0% |
| ! | TAAGATAGCTTGCGACAGAT+AGG | - | chr3.2:19615091-19615110 | None:intergenic | 40.0% |
| ! | TCTAGAATAAAAAGGGGCAC+TGG | - | chr3.2:19613994-19614013 | None:intergenic | 40.0% |
| ! | TGTTTTCGTTTGCGGAAACA+TGG | + | chr3.2:19614090-19614109 | MS.gene60456:intron | 40.0% |
| !! | TACAGCCGATTCTGAAACAA+GGG | - | chr3.2:19614534-19614553 | None:intergenic | 40.0% |
| !! | TAGACACATTAGGGCTAGTT+TGG | - | chr3.2:19615720-19615739 | None:intergenic | 40.0% |
| !!! | AAGCATTTTGACTTTGGCGA+AGG | + | chr3.2:19615802-19615821 | MS.gene60456:CDS | 40.0% |
| AAAGCCCCTCCGAATAATGT+TGG | + | chr3.2:19614292-19614311 | MS.gene60456:intron | 45.0% | |
| AAGGAAATCCGACAACCTGA+TGG | - | chr3.2:19616612-19616631 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+AGG | - | chr3.2:19615654-19615673 | None:intergenic | 45.0% | |
| AGCATTGTCTTCCACATGAG+GGG | - | chr3.2:19614805-19614824 | None:intergenic | 45.0% | |
| ATAGCGAGTGTTTGGGAAAG+CGG | - | chr3.2:19613925-19613944 | None:intergenic | 45.0% | |
| CCCCTACACATGCATATCAA+TGG | - | chr3.2:19615357-19615376 | None:intergenic | 45.0% | |
| CTGCACAACTTGACTTCCTA+AGG | + | chr3.2:19614660-19614679 | MS.gene60456:CDS | 45.0% | |
| CTTGGAAATATCTCTCCTCG+GGG | + | chr3.2:19613761-19613780 | MS.gene60456:intron | 45.0% | |
| GAACAAATCGGAAGCTCAGA+AGG | - | chr3.2:19614719-19614738 | None:intergenic | 45.0% | |
| GACAATGCTTGCATCCTTTC+CGG | + | chr3.2:19614816-19614835 | MS.gene60456:CDS | 45.0% | |
| GCGTGTTCTTTCAAAGCCTA+CGG | + | chr3.2:19614940-19614959 | MS.gene60456:CDS | 45.0% | |
| GGTTTCTCTCTACCTTATCC+TGG | + | chr3.2:19616539-19616558 | MS.gene60456:intron | 45.0% | |
| GTAAAATGGGTCAAACAGGG+AGG | - | chr3.2:19615900-19615919 | None:intergenic | 45.0% | |
| GTTCTTCTCTTTCTTCAGGC+CGG | - | chr3.2:19614838-19614857 | None:intergenic | 45.0% | |
| GTTTCAGAATCGGCTGTACT+TGG | + | chr3.2:19614536-19614555 | MS.gene60456:CDS | 45.0% | |
| TAGTGCTATACCGCTGCTAT+AGG | - | chr3.2:19616213-19616232 | None:intergenic | 45.0% | |
| TTAGCTGCCTTGTGATGTTG+AGG | + | chr3.2:19613724-19613743 | MS.gene60456:intron | 45.0% | |
| TTGCAGCATGCATATCGTGA+TGG | + | chr3.2:19616445-19616464 | MS.gene60456:intron | 45.0% | |
| TTGGAAATATCTCTCCTCGG+GGG | + | chr3.2:19613762-19613781 | MS.gene60456:intron | 45.0% | |
| ! | ACATGATGCCATCAGGTTGT+CGG | + | chr3.2:19616601-19616620 | MS.gene60456:intron | 45.0% |
| ! | AGGTAGCTTTGCGTCATCTT+GGG | + | chr3.2:19616479-19616498 | MS.gene60456:CDS | 45.0% |
| ! | CAAGCATTGTCTTCCACATG+AGG | - | chr3.2:19614807-19614826 | None:intergenic | 45.0% |
| ! | GAGGTCAGGGTGTTAAATCT+TGG | + | chr3.2:19613743-19613762 | MS.gene60456:intron | 45.0% |
| ! | GTGCTTGTGTTGTCTTGTTG+TGG | + | chr3.2:19614387-19614406 | MS.gene60456:intron | 45.0% |
| ! | TGATTCCAGGCTTGTTCACT+GGG | - | chr3.2:19614635-19614654 | None:intergenic | 45.0% |
| ! | TTGATTCCAGGCTTGTTCAC+TGG | - | chr3.2:19614636-19614655 | None:intergenic | 45.0% |
| !! | ACAGCCGATTCTGAAACAAG+GGG | - | chr3.2:19614533-19614552 | None:intergenic | 45.0% |
| !! | ACATTAGGGCTAGTTTGGAC+AGG | - | chr3.2:19615715-19615734 | None:intergenic | 45.0% |
| !! | GAATAAAAAGGGGCACTGGA+TGG | - | chr3.2:19613990-19614009 | None:intergenic | 45.0% |
| !! | GTACAGCCGATTCTGAAACA+AGG | - | chr3.2:19614535-19614554 | None:intergenic | 45.0% |
| AATATCTCTCCTCGGGGGTA+AGG | + | chr3.2:19613767-19613786 | MS.gene60456:intron | 50.0% | |
| ACCCTGACCTCAACATCACA+AGG | - | chr3.2:19613734-19613753 | None:intergenic | 50.0% | |
| ATATCGTGATGGCCGTCTTG+AGG | + | chr3.2:19616456-19616475 | MS.gene60456:CDS | 50.0% | |
| CGGTGAAAAACTTGCGGTGA+TGG | + | chr3.2:19613811-19613830 | MS.gene60456:intron | 50.0% | |
| CTCATGGAGCGTGTCTGAAA+GGG | + | chr3.2:19614242-19614261 | MS.gene60456:CDS | 50.0% | |
| GAGGCTATAGCCTATAGCAG+CGG | + | chr3.2:19616200-19616219 | MS.gene60456:intron | 50.0% | |
| GCAAAGCTACCTCCTCAAGA+CGG | - | chr3.2:19616471-19616490 | None:intergenic | 50.0% | |
| GCCTTGTGATGTTGAGGTCA+GGG | + | chr3.2:19613730-19613749 | MS.gene60456:intron | 50.0% | |
| GGAGATTTATGCCCCTCATG+TGG | + | chr3.2:19614791-19614810 | MS.gene60456:CDS | 50.0% | |
| GTTCAGAGTGACGCCCTATT+TGG | + | chr3.2:19615435-19615454 | MS.gene60456:intron | 50.0% | |
| TCATGGAGCGTGTCTGAAAG+GGG | + | chr3.2:19614243-19614262 | MS.gene60456:CDS | 50.0% | |
| TCTCTTTCTTCAGGCCGGAA+AGG | - | chr3.2:19614833-19614852 | None:intergenic | 50.0% | |
| TGCCTTGTGATGTTGAGGTC+AGG | + | chr3.2:19613729-19613748 | MS.gene60456:intron | 50.0% | |
| TTCTTCCCAGTGAACAAGCC+TGG | + | chr3.2:19614627-19614646 | MS.gene60456:CDS | 50.0% | |
| ! | AATGCTGCTTGAGTGCACGT+TGG | + | chr3.2:19613889-19613908 | MS.gene60456:intron | 50.0% |
| ! | AGAAGCAGCTGGTACCGAAA+GGG | - | chr3.2:19615834-19615853 | None:intergenic | 50.0% |
| ! | CCAGCCCCTTGTTTCAGAAT+CGG | + | chr3.2:19614526-19614545 | MS.gene60456:CDS | 50.0% |
| ! | GAGGTAGCTTTGCGTCATCT+TGG | + | chr3.2:19616478-19616497 | MS.gene60456:CDS | 50.0% |
| ! | GGTAGCTTTGCGTCATCTTG+GGG | + | chr3.2:19616480-19616499 | MS.gene60456:CDS | 50.0% |
| ! | TAGAAGCAGCTGGTACCGAA+AGG | - | chr3.2:19615835-19615854 | None:intergenic | 50.0% |
| ! | TGAAACAAGGGGCTGGTGTT+CGG | - | chr3.2:19614522-19614541 | None:intergenic | 50.0% |
| !! | GCTTTGAAAGAACACGCTCG+AGG | - | chr3.2:19614937-19614956 | None:intergenic | 50.0% |
| AACTTACGCTCAGCTGCCGT+AGG | - | chr3.2:19614959-19614978 | None:intergenic | 55.0% | |
| AATGGGTCAAACAGGGAGGG+AGG | - | chr3.2:19615896-19615915 | None:intergenic | 55.0% | |
| ACGGCAGCTGAGCGTAAGTT+TGG | + | chr3.2:19614959-19614978 | MS.gene60456:CDS | 55.0% | |
| ATGGGTCAAACAGGGAGGGA+GGG | - | chr3.2:19615895-19615914 | None:intergenic | 55.0% | |
| CGGTACCAGCTGCTTCTACA+AGG | + | chr3.2:19615837-19615856 | MS.gene60456:CDS | 55.0% | |
| CTGCTGGAAACTGTCCACGA+GGG | + | chr3.2:19614747-19614766 | MS.gene60456:CDS | 55.0% | |
| GCTCATGGAGCGTGTCTGAA+AGG | + | chr3.2:19614241-19614260 | MS.gene60456:CDS | 55.0% | |
| GGCGAAGGAAACTGCCCTTT+CGG | + | chr3.2:19615817-19615836 | MS.gene60456:CDS | 55.0% | |
| GTGCTTATGGTAGTCGCTGC+AGG | + | chr3.2:19614441-19614460 | MS.gene60456:CDS | 55.0% | |
| TATCCTCCCCAGATTCCACC+TGG | + | chr3.2:19613952-19613971 | MS.gene60456:intron | 55.0% | |
| TGAGGACATTGTTCCCCTCG+TGG | - | chr3.2:19614764-19614783 | None:intergenic | 55.0% | |
| TGCTGGAAACTGTCCACGAG+GGG | + | chr3.2:19614748-19614767 | MS.gene60456:CDS | 55.0% | |
| ! | TATGCATAGCCTTACCCCCG+AGG | - | chr3.2:19613779-19613798 | None:intergenic | 55.0% |
| !! | CCGATTCTGAAACAAGGGGC+TGG | - | chr3.2:19614529-19614548 | None:intergenic | 55.0% |
| CGTCATCTTGGGGCTGCAGA+TGG | + | chr3.2:19616490-19616509 | MS.gene60456:CDS | 60.0% | |
| CTCCCACCAGGTGGAATCTG+GGG | - | chr3.2:19613961-19613980 | None:intergenic | 60.0% | |
| CTCCCCAGATTCCACCTGGT+GGG | + | chr3.2:19613956-19613975 | MS.gene60456:intron | 60.0% | |
| GCATGTGTAGGGGCTGCAGA+TGG | + | chr3.2:19615364-19615383 | MS.gene60456:intron | 60.0% | |
| GCTCCCACCAGGTGGAATCT+GGG | - | chr3.2:19613962-19613981 | None:intergenic | 60.0% | |
| GCTGCTGGAAACTGTCCACG+AGG | + | chr3.2:19614746-19614765 | MS.gene60456:CDS | 60.0% | |
| TCGTGATGGCCGTCTTGAGG+AGG | + | chr3.2:19616459-19616478 | MS.gene60456:CDS | 60.0% | |
| !! | AAAGGGGCACTGGATGGACG+AGG | - | chr3.2:19613984-19614003 | None:intergenic | 60.0% |
| CCACCAGGTGGAATCTGGGG+AGG | - | chr3.2:19613958-19613977 | None:intergenic | 65.0% | |
| CCTCCCCAGATTCCACCTGG+TGG | + | chr3.2:19613955-19613974 | MS.gene60456:intron | 65.0% | |
| GGCTCCCACCAGGTGGAATC+TGG | - | chr3.2:19613963-19613982 | None:intergenic | 65.0% | |
| GGATGGACGAGGCTCCCACC+AGG | - | chr3.2:19613973-19613992 | None:intergenic | 70.0% | |
| TGGACGAGGCTCCCACCAGG+TGG | - | chr3.2:19613970-19613989 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 19613186 | 19616652 | 19613186 | ID=MS.gene60456 |
| chr3.2 | mRNA | 19613186 | 19616652 | 19613186 | ID=MS.gene60456.t1;Parent=MS.gene60456 |
| chr3.2 | exon | 19613186 | 19613196 | 19613186 | ID=MS.gene60456.t1.exon1;Parent=MS.gene60456.t1 |
| chr3.2 | CDS | 19613186 | 19613196 | 19613186 | ID=cds.MS.gene60456.t1;Parent=MS.gene60456.t1 |
| chr3.2 | exon | 19614222 | 19614309 | 19614222 | ID=MS.gene60456.t1.exon2;Parent=MS.gene60456.t1 |
| chr3.2 | CDS | 19614222 | 19614309 | 19614222 | ID=cds.MS.gene60456.t1;Parent=MS.gene60456.t1 |
| chr3.2 | exon | 19614413 | 19615191 | 19614413 | ID=MS.gene60456.t1.exon3;Parent=MS.gene60456.t1 |
| chr3.2 | CDS | 19614413 | 19615191 | 19614413 | ID=cds.MS.gene60456.t1;Parent=MS.gene60456.t1 |
| chr3.2 | exon | 19615789 | 19615858 | 19615789 | ID=MS.gene60456.t1.exon4;Parent=MS.gene60456.t1 |
| chr3.2 | CDS | 19615789 | 19615858 | 19615789 | ID=cds.MS.gene60456.t1;Parent=MS.gene60456.t1 |
| chr3.2 | exon | 19616451 | 19616539 | 19616451 | ID=MS.gene60456.t1.exon5;Parent=MS.gene60456.t1 |
| chr3.2 | CDS | 19616451 | 19616539 | 19616451 | ID=cds.MS.gene60456.t1;Parent=MS.gene60456.t1 |
| chr3.2 | exon | 19616616 | 19616652 | 19616616 | ID=MS.gene60456.t1.exon6;Parent=MS.gene60456.t1 |
| chr3.2 | CDS | 19616616 | 19616652 | 19616616 | ID=cds.MS.gene60456.t1;Parent=MS.gene60456.t1 |
| Gene Sequence |
| Protein sequence |
