AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60591

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60591.t1 MTR_1g093095 97.753 267 6 0 1 267 1 267 0.0 501
MS.gene60591.t1 MTR_4g059870 34.507 142 81 4 109 249 61 191 5.27e-20 89.7
MS.gene60591.t1 MTR_1g112270 35.862 145 78 5 107 249 65 196 5.59e-20 89.7
MS.gene60591.t1 MTR_1g112270 35.862 145 78 5 107 249 76 207 6.16e-20 89.7
MS.gene60591.t1 MTR_1g094115 36.429 140 74 5 112 249 56 182 9.47e-20 89.0
MS.gene60591.t1 MTR_1g016010 34.161 161 91 6 91 249 47 194 1.14e-19 88.6
MS.gene60591.t1 MTR_1g094115 35.172 145 79 5 107 249 68 199 1.28e-19 88.6
MS.gene60591.t1 MTR_8g017210 33.333 156 89 6 109 262 85 227 1.42e-19 88.6
MS.gene60591.t1 MTR_2g093960 35.211 142 80 4 109 249 55 185 2.95e-19 87.0
MS.gene60591.t1 MTR_2g099990 35.172 145 79 6 107 249 67 198 1.04e-18 85.9
MS.gene60591.t1 MTR_2g099990 35.211 142 77 6 110 249 1 129 6.23e-18 83.2
MS.gene60591.t1 MTR_2g090745 33.553 152 88 5 107 257 28 167 1.88e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60591.t1 AT1G13290 65.854 246 60 5 23 258 12 243 1.19e-108 317
MS.gene60591.t1 AT3G57670 73.077 182 45 2 99 280 201 378 9.99e-98 292
MS.gene60591.t1 AT1G51220 55.000 260 100 5 6 264 81 324 9.48e-95 283
MS.gene60591.t1 AT3G20880 69.780 182 48 2 97 278 238 412 4.79e-94 283
MS.gene60591.t1 AT1G08290 71.264 174 44 3 99 271 164 332 1.33e-92 277
MS.gene60591.t1 AT1G34790 75.159 157 36 1 100 256 130 283 3.47e-88 265
MS.gene60591.t1 AT1G34370 41.176 153 84 5 107 255 27 177 5.29e-26 103
MS.gene60591.t1 AT1G34370 41.176 153 84 5 107 255 237 387 2.82e-25 105
MS.gene60591.t1 AT1G34370 41.176 153 84 5 107 255 237 387 2.82e-25 105
MS.gene60591.t1 AT5G22890 40.645 155 84 7 106 255 209 360 2.60e-24 100
MS.gene60591.t1 AT5G03150 35.211 142 80 4 109 249 76 206 9.59e-21 92.0
MS.gene60591.t1 AT1G55110 33.758 157 90 5 107 261 84 228 1.15e-20 91.7
MS.gene60591.t1 AT1G55110 33.758 157 90 5 107 261 84 228 1.15e-20 91.7
MS.gene60591.t1 AT1G55110 33.758 157 90 5 107 261 84 228 1.15e-20 91.7
MS.gene60591.t1 AT5G44160 32.178 202 106 8 63 257 20 197 4.70e-20 89.7
MS.gene60591.t1 AT3G45260 34.615 156 90 4 109 263 62 206 7.41e-20 89.0
MS.gene60591.t1 AT3G45260 34.615 156 90 4 109 263 62 206 7.41e-20 89.0
MS.gene60591.t1 AT2G02070 35.443 158 87 5 94 249 60 204 9.25e-20 89.4
MS.gene60591.t1 AT2G02070 35.443 158 87 5 94 249 60 204 9.25e-20 89.4
MS.gene60591.t1 AT2G02080 36.552 145 77 5 107 249 75 206 1.05e-19 89.0
MS.gene60591.t1 AT2G02080 36.552 145 77 5 107 249 75 206 1.05e-19 89.0
MS.gene60591.t1 AT2G02080 36.552 145 77 5 107 249 75 206 1.05e-19 89.0
MS.gene60591.t1 AT2G02080 36.552 145 77 5 107 249 75 206 1.05e-19 89.0
MS.gene60591.t1 AT5G60470 35.211 142 80 4 109 249 58 188 1.11e-19 88.6
MS.gene60591.t1 AT5G60470 35.211 142 80 4 109 249 67 197 1.13e-19 88.6
MS.gene60591.t1 AT5G60470 35.211 142 80 4 109 249 63 193 1.32e-19 88.6
MS.gene60591.t1 AT5G66730 34.483 145 80 5 107 249 53 184 1.67e-19 88.2
MS.gene60591.t1 AT1G14580 37.241 145 76 6 107 249 88 219 2.63e-19 87.8
MS.gene60591.t1 AT1G14580 37.241 145 76 6 107 249 74 205 2.74e-19 87.4
MS.gene60591.t1 AT1G14580 37.241 145 76 6 107 249 74 205 2.74e-19 87.4
MS.gene60591.t1 AT3G50700 35.172 145 79 5 107 249 55 186 8.17e-19 86.3
MS.gene60591.t1 AT2G02080 36.620 142 75 5 110 249 1 129 8.46e-19 85.9
MS.gene60591.t1 AT2G02080 36.620 142 75 5 110 249 1 129 8.46e-19 85.9
MS.gene60591.t1 AT1G03840 31.638 177 107 6 83 257 35 199 8.52e-19 86.3
MS.gene60591.t1 AT5G44160 34.667 150 85 5 109 257 21 158 2.56e-18 84.7
MS.gene60591.t1 AT3G13810 32.051 156 94 4 107 261 72 216 4.79e-18 84.0
MS.gene60591.t1 AT3G13810 32.051 156 94 4 107 261 86 230 4.93e-18 84.0
MS.gene60591.t1 AT3G13810 32.895 152 90 4 107 257 78 218 4.99e-18 84.0
MS.gene60591.t1 AT3G13810 32.051 156 94 4 107 261 91 235 5.21e-18 84.0
MS.gene60591.t1 AT3G13810 32.051 156 94 4 107 261 91 235 5.21e-18 84.0
MS.gene60591.t1 AT3G13810 32.895 152 90 4 107 257 92 232 5.42e-18 84.0
MS.gene60591.t1 AT1G03840 31.844 179 106 6 83 257 35 201 5.65e-18 84.0
MS.gene60591.t1 AT4G02670 34.028 144 83 4 107 249 74 206 7.02e-18 83.2
MS.gene60591.t1 AT4G02670 34.028 144 83 4 107 249 76 208 7.03e-18 83.2

Find 81 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCGAGTTTGGGAGGTATT+TGG 0.247423 1.2:-69339803 None:intergenic
CTCCCATTATTCCTCAATAT+TGG 0.256317 1.2:+69339976 MS.gene60591:CDS
AGTGAAAGTTGGATTAATTA+AGG 0.285981 1.2:-69339937 None:intergenic
GATCCAATATTGAGGAATAA+TGG 0.295991 1.2:-69339979 None:intergenic
AAAGGACCGGAGTCTCTAAA+AGG 0.306782 1.2:+69340374 MS.gene60591:CDS
GATGAAGATGATGCTGGTTT+TGG 0.319383 1.2:-69340398 None:intergenic
TGCAGACAGTGCAAGAAAAC+TGG 0.325433 1.2:-69340034 None:intergenic
TCTCCTGCTCAAATCCTTGT+TGG 0.331954 1.2:+69340005 MS.gene60591:CDS
TTCCTCTCTCTTGCTCCTCC+TGG 0.347551 1.2:+69339777 MS.gene60591:CDS
AAAGATCACGTTCGTGCGTT+TGG 0.349116 1.2:+69340674 MS.gene60591:CDS
AGAAGAATTGTGGGAAGCTT+TGG 0.351421 1.2:+69340609 MS.gene60591:CDS
AATGGGAGTGTGAGATGGTT+TGG 0.355414 1.2:-69339961 None:intergenic
TTCTCTTGTAGTGTGTTTGA+AGG 0.366292 1.2:-69340511 None:intergenic
AGGGATAGTAGTAGTAATAG+TGG 0.376112 1.2:-69339835 None:intergenic
AGAGAGGTAGTAGTAGAAAT+AGG 0.389319 1.2:-69339873 None:intergenic
ATCCAATATTGAGGAATAAT+GGG 0.396877 1.2:-69339978 None:intergenic
CACGTTCGTGCGTTTGGTAA+TGG 0.397696 1.2:+69340680 MS.gene60591:CDS
CTACATTTACAGCACAAGTA+TGG 0.418258 1.2:-69339905 None:intergenic
GATGGTTTGGAAGTGAAAGT+TGG 0.427167 1.2:-69339948 None:intergenic
TCTTTCAGTGGTCTTGCCCT+TGG 0.430630 1.2:-69340479 None:intergenic
CATTTGCTGTGAGAGGAGAT+TGG 0.436076 1.2:+69340576 MS.gene60591:CDS
TAGTAGTAATAGTGGGATGA+GGG 0.441652 1.2:-69339827 None:intergenic
CTGATAGAAAGAGAGTGAAA+AGG 0.452681 1.2:+69340938 MS.gene60591:intron
TTGGGAGGTATTTGGTGGCC+AGG 0.460715 1.2:-69339795 None:intergenic
GGGGACATGGATCTCAATAT+AGG 0.462797 1.2:+69340351 MS.gene60591:CDS
TCTCTTGTAGTGTGTTTGAA+GGG 0.467920 1.2:-69340510 None:intergenic
GTAGTAGTAATAGTGGGATG+AGG 0.468089 1.2:-69339828 None:intergenic
GAAATAGGTATTTGATGCAA+GGG 0.489738 1.2:-69339858 None:intergenic
CATGTTGTTGAAACGGTTGA+AGG 0.493614 1.2:-69340063 None:intergenic
AGGAGCAAGAGAGAGGAAGA+TGG 0.499455 1.2:-69339772 None:intergenic
AAGAGAGTGAAAAGGAGAGT+GGG 0.502439 1.2:+69340946 MS.gene60591:CDS
GGGATAGTAGTAGTAATAGT+GGG 0.503268 1.2:-69339834 None:intergenic
AAAGAGAGTGAAAAGGAGAG+TGG 0.505386 1.2:+69340945 MS.gene60591:CDS
CGAGTTTGGGAGGTATTTGG+TGG 0.508108 1.2:-69339800 None:intergenic
AGAAATAGGTATTTGATGCA+AGG 0.514616 1.2:-69339859 None:intergenic
CCATGCTATTGTTGTGCTGA+GGG 0.518579 1.2:+69340434 MS.gene60591:CDS
GGACACATGAGAAGAATTGT+GGG 0.524360 1.2:+69340600 MS.gene60591:CDS
ACAAGGATTTGAGCAGGAGA+AGG 0.531708 1.2:-69340002 None:intergenic
CAACCGTTTCAACAACATGC+AGG 0.536317 1.2:+69340067 MS.gene60591:CDS
GAAACAACATAAACTATCCA+AGG 0.546681 1.2:+69340462 MS.gene60591:CDS
GAACCTGCATGTTGTTGAAA+CGG 0.548476 1.2:-69340070 None:intergenic
AGGACACATGAGAAGAATTG+TGG 0.552345 1.2:+69340599 MS.gene60591:CDS
AGCATTGATGAAGATGATGC+TGG 0.557005 1.2:-69340404 None:intergenic
AAGGACCGGAGTCTCTAAAA+GGG 0.557565 1.2:+69340375 MS.gene60591:CDS
ATCTAAGCTGCTGCTGCAAG+AGG 0.562751 1.2:-69339739 None:intergenic
TTGTATGGTAGATGCATATG+TGG 0.564484 1.2:+69340330 MS.gene60591:intron
TGGCCATGCTCCACACACAT+TGG 0.565061 1.2:+69340700 MS.gene60591:CDS
GGAGGTATTTGGTGGCCAGG+AGG 0.567766 1.2:-69339792 None:intergenic
ATAGGTATTTGATGCAAGGG+AGG 0.571468 1.2:-69339855 None:intergenic
GGACCAACAAGGATTTGAGC+AGG 0.574385 1.2:-69340008 None:intergenic
CAAGGATTTGAGCAGGAGAA+GGG 0.578543 1.2:-69340001 None:intergenic
ACCATGCTATTGTTGTGCTG+AGG 0.581776 1.2:+69340433 MS.gene60591:CDS
AGTAGTAATAGTGGGATGAG+GGG 0.585249 1.2:-69339826 None:intergenic
GCAGACAGTGCAAGAAAACT+GGG 0.587578 1.2:-69340033 None:intergenic
CATTCGAGTGCAGAAAGTGT+AGG 0.590258 1.2:+69340549 MS.gene60591:CDS
CTCAAAGATTCCAATGTGTG+TGG 0.591809 1.2:-69340710 None:intergenic
GGCCAGGAGGAGCAAGAGAG+AGG 0.593784 1.2:-69339779 None:intergenic
GGAATAATGGGAGTGTGAGA+TGG 0.594723 1.2:-69339966 None:intergenic
TTGCTGTGAGAGGAGATTGG+AGG 0.596970 1.2:+69340579 MS.gene60591:CDS
ATCTCAATATAGGAAAGGAC+CGG 0.597133 1.2:+69340361 MS.gene60591:CDS
AGGGTTCTGAAATCTTTCAG+TGG 0.606548 1.2:-69340491 None:intergenic
GGAGAAGGGATCCAATATTG+AGG 0.614687 1.2:-69339987 None:intergenic
AGGAAGACATTTGCTGTGAG+AGG 0.616285 1.2:+69340569 MS.gene60591:CDS
CATGGATCTCAATATAGGAA+AGG 0.616598 1.2:+69340356 MS.gene60591:CDS
TGTATGGTAGATGCATATGT+GGG 0.620648 1.2:+69340331 MS.gene60591:intron
ACACACTACAAGAGAAAGCA+CGG 0.625692 1.2:+69340518 MS.gene60591:CDS
GTAGTAATAGTGGGATGAGG+GGG 0.632310 1.2:-69339825 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.632523 1.2:+69340338 MS.gene60591:intron
TCTAAGCTGCTGCTGCAAGA+GGG 0.633302 1.2:-69339738 None:intergenic
ACTACAAGAGAAAGCACGGA+GGG 0.635203 1.2:+69340522 MS.gene60591:CDS
AGTATGGTCATGGTGAAGAG+AGG 0.640967 1.2:-69339889 None:intergenic
TAGGTATTTGATGCAAGGGA+GGG 0.641902 1.2:-69339854 None:intergenic
CCCTCAGCACAACAATAGCA+TGG 0.647254 1.2:-69340434 None:intergenic
AAACAACATAAACTATCCAA+GGG 0.649476 1.2:+69340463 MS.gene60591:CDS
TTACAGCACAAGTATGGTCA+TGG 0.652632 1.2:-69339899 None:intergenic
ATTCCAATGTGTGTGGAGCA+TGG 0.657543 1.2:-69340703 None:intergenic
ACAGTGCAAGAAAACTGGGT+AGG 0.667615 1.2:-69340029 None:intergenic
AAAACTGGGTAGGACCAACA+AGG 0.677453 1.2:-69340019 None:intergenic
GTACTGATGATGAGTTTGCA+TGG 0.690956 1.2:-69339694 None:intergenic
CACTACAAGAGAAAGCACGG+AGG 0.743501 1.2:+69340521 MS.gene60591:CDS
GTATGGTAGATGCATATGTG+GGG 0.763722 1.2:+69340332 MS.gene60591:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGATAAAAATATAATAA+TGG - chr1.2:69340098-69340117 None:intergenic 10.0%
!! AAACATGATTCATATATATA+TGG + chr1.2:69340285-69340304 MS.gene60591:intron 15.0%
!! CTAATGAATGATTAATTTAA+AGG - chr1.2:69340187-69340206 None:intergenic 15.0%
!! TAAAGTAAATGAAAATTACA+TGG + chr1.2:69340745-69340764 MS.gene60591:intron 15.0%
!! TCATGATATAGTAAAAATAA+AGG - chr1.2:69340116-69340135 None:intergenic 15.0%
!! TACGATATTATTGTATTGTA+TGG + chr1.2:69340315-69340334 MS.gene60591:intron 20.0%
! AAACAACATAAACTATCCAA+GGG + chr1.2:69340463-69340482 MS.gene60591:CDS 25.0%
! AACTCAATATGATTCTTTCA+TGG - chr1.2:69340249-69340268 None:intergenic 25.0%
! AGTGAAAGTTGGATTAATTA+AGG - chr1.2:69339940-69339959 None:intergenic 25.0%
! ATCCAATATTGAGGAATAAT+GGG - chr1.2:69339981-69340000 None:intergenic 25.0%
! GAATGATTAATTTAAAGGCA+AGG - chr1.2:69340182-69340201 None:intergenic 25.0%
AAACAAAGAGACAAACATGA+TGG - chr1.2:69340914-69340933 None:intergenic 30.0%
AGAAATAGGTATTTGATGCA+AGG - chr1.2:69339862-69339881 None:intergenic 30.0%
GAAACAACATAAACTATCCA+AGG + chr1.2:69340462-69340481 MS.gene60591:CDS 30.0%
GAAATAGGTATTTGATGCAA+GGG - chr1.2:69339861-69339880 None:intergenic 30.0%
GATCCAATATTGAGGAATAA+TGG - chr1.2:69339982-69340001 None:intergenic 30.0%
TGTACTGTTTGTATGATGTT+TGG + chr1.2:69340847-69340866 MS.gene60591:intron 30.0%
TGTTGTAAACTAGTAGTACT+TGG + chr1.2:69340882-69340901 MS.gene60591:intron 30.0%
AGAGAGGTAGTAGTAGAAAT+AGG - chr1.2:69339876-69339895 None:intergenic 35.0%
AGGGATAGTAGTAGTAATAG+TGG - chr1.2:69339838-69339857 None:intergenic 35.0%
ATCTCAATATAGGAAAGGAC+CGG + chr1.2:69340361-69340380 MS.gene60591:CDS 35.0%
ATGGAAGAAGAAGAAGAAAG+TGG + chr1.2:69340764-69340783 MS.gene60591:intron 35.0%
CATGGATCTCAATATAGGAA+AGG + chr1.2:69340356-69340375 MS.gene60591:CDS 35.0%
CTACATTTACAGCACAAGTA+TGG - chr1.2:69339908-69339927 None:intergenic 35.0%
CTCCCATTATTCCTCAATAT+TGG + chr1.2:69339976-69339995 MS.gene60591:CDS 35.0%
CTGATAGAAAGAGAGTGAAA+AGG + chr1.2:69340938-69340957 MS.gene60591:intron 35.0%
GGGATAGTAGTAGTAATAGT+GGG - chr1.2:69339837-69339856 None:intergenic 35.0%
TCTCTTGTAGTGTGTTTGAA+GGG - chr1.2:69340513-69340532 None:intergenic 35.0%
TGTATGGTAGATGCATATGT+GGG + chr1.2:69340331-69340350 MS.gene60591:intron 35.0%
TTCTCTTGTAGTGTGTTTGA+AGG - chr1.2:69340514-69340533 None:intergenic 35.0%
TTGTATGGTAGATGCATATG+TGG + chr1.2:69340330-69340349 MS.gene60591:intron 35.0%
! TAGTAGTAATAGTGGGATGA+GGG - chr1.2:69339830-69339849 None:intergenic 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + chr1.2:69340623-69340642 MS.gene60591:CDS 35.0%
AAAGAGAGTGAAAAGGAGAG+TGG + chr1.2:69340945-69340964 MS.gene60591:CDS 40.0%
AAGAGAGTGAAAAGGAGAGT+GGG + chr1.2:69340946-69340965 MS.gene60591:CDS 40.0%
ACACACTACAAGAGAAAGCA+CGG + chr1.2:69340518-69340537 MS.gene60591:CDS 40.0%
AGAAGAATTGTGGGAAGCTT+TGG + chr1.2:69340609-69340628 MS.gene60591:CDS 40.0%
AGGACACATGAGAAGAATTG+TGG + chr1.2:69340599-69340618 MS.gene60591:CDS 40.0%
ATAGGTATTTGATGCAAGGG+AGG - chr1.2:69339858-69339877 None:intergenic 40.0%
CATGTTGTTGAAACGGTTGA+AGG - chr1.2:69340066-69340085 None:intergenic 40.0%
CTCAAAGATTCCAATGTGTG+TGG - chr1.2:69340713-69340732 None:intergenic 40.0%
GAACCTGCATGTTGTTGAAA+CGG - chr1.2:69340073-69340092 None:intergenic 40.0%
GGACACATGAGAAGAATTGT+GGG + chr1.2:69340600-69340619 MS.gene60591:CDS 40.0%
GTATGGTAGATGCATATGTG+GGG + chr1.2:69340332-69340351 MS.gene60591:intron 40.0%
TAGGTATTTGATGCAAGGGA+GGG - chr1.2:69339857-69339876 None:intergenic 40.0%
TTACAGCACAAGTATGGTCA+TGG - chr1.2:69339902-69339921 None:intergenic 40.0%
! AGTAGTAATAGTGGGATGAG+GGG - chr1.2:69339829-69339848 None:intergenic 40.0%
! GATGGTTTGGAAGTGAAAGT+TGG - chr1.2:69339951-69339970 None:intergenic 40.0%
! GTAGTAGTAATAGTGGGATG+AGG - chr1.2:69339831-69339850 None:intergenic 40.0%
!! AGCATTGATGAAGATGATGC+TGG - chr1.2:69340407-69340426 None:intergenic 40.0%
!! AGGGTTCTGAAATCTTTCAG+TGG - chr1.2:69340494-69340513 None:intergenic 40.0%
!!! GATGAAGATGATGCTGGTTT+TGG - chr1.2:69340401-69340420 None:intergenic 40.0%
AAAACTGGGTAGGACCAACA+AGG - chr1.2:69340022-69340041 None:intergenic 45.0%
AAAGATCACGTTCGTGCGTT+TGG + chr1.2:69340674-69340693 MS.gene60591:CDS 45.0%
AAAGGACCGGAGTCTCTAAA+AGG + chr1.2:69340374-69340393 MS.gene60591:CDS 45.0%
ACAAGGATTTGAGCAGGAGA+AGG - chr1.2:69340005-69340024 None:intergenic 45.0%
ACAGTGCAAGAAAACTGGGT+AGG - chr1.2:69340032-69340051 None:intergenic 45.0%
ACCATGCTATTGTTGTGCTG+AGG + chr1.2:69340433-69340452 MS.gene60591:CDS 45.0%
AGTATGGTCATGGTGAAGAG+AGG - chr1.2:69339892-69339911 None:intergenic 45.0%
ATTCCAATGTGTGTGGAGCA+TGG - chr1.2:69340706-69340725 None:intergenic 45.0%
CAACCGTTTCAACAACATGC+AGG + chr1.2:69340067-69340086 MS.gene60591:CDS 45.0%
CAAGGATTTGAGCAGGAGAA+GGG - chr1.2:69340004-69340023 None:intergenic 45.0%
CCATGCTATTGTTGTGCTGA+GGG + chr1.2:69340434-69340453 MS.gene60591:CDS 45.0%
GCAGACAGTGCAAGAAAACT+GGG - chr1.2:69340036-69340055 None:intergenic 45.0%
GGAGAAGGGATCCAATATTG+AGG - chr1.2:69339990-69340009 None:intergenic 45.0%
GGGGACATGGATCTCAATAT+AGG + chr1.2:69340351-69340370 MS.gene60591:CDS 45.0%
TAGATGCATATGTGGGGACA+TGG + chr1.2:69340338-69340357 MS.gene60591:intron 45.0%
TCTCCTGCTCAAATCCTTGT+TGG + chr1.2:69340005-69340024 MS.gene60591:CDS 45.0%
TGCAGACAGTGCAAGAAAAC+TGG - chr1.2:69340037-69340056 None:intergenic 45.0%
! AAGGACCGGAGTCTCTAAAA+GGG + chr1.2:69340375-69340394 MS.gene60591:CDS 45.0%
! AATGGGAGTGTGAGATGGTT+TGG - chr1.2:69339964-69339983 None:intergenic 45.0%
! ACTACAAGAGAAAGCACGGA+GGG + chr1.2:69340522-69340541 MS.gene60591:CDS 45.0%
! CATTCGAGTGCAGAAAGTGT+AGG + chr1.2:69340549-69340568 MS.gene60591:CDS 45.0%
! GGAATAATGGGAGTGTGAGA+TGG - chr1.2:69339969-69339988 None:intergenic 45.0%
! GTAGTAATAGTGGGATGAGG+GGG - chr1.2:69339828-69339847 None:intergenic 45.0%
!! AGGAAGACATTTGCTGTGAG+AGG + chr1.2:69340569-69340588 MS.gene60591:CDS 45.0%
!! CATTTGCTGTGAGAGGAGAT+TGG + chr1.2:69340576-69340595 MS.gene60591:CDS 45.0%
!! TTTGGCCCTTTTAGAGACTC+CGG - chr1.2:69340383-69340402 None:intergenic 45.0%
AGGAGCAAGAGAGAGGAAGA+TGG - chr1.2:69339775-69339794 None:intergenic 50.0%
ATCTAAGCTGCTGCTGCAAG+AGG - chr1.2:69339742-69339761 None:intergenic 50.0%
CACGTTCGTGCGTTTGGTAA+TGG + chr1.2:69340680-69340699 MS.gene60591:CDS 50.0%
CCCTCAGCACAACAATAGCA+TGG - chr1.2:69340437-69340456 None:intergenic 50.0%
GGACCAACAAGGATTTGAGC+AGG - chr1.2:69340011-69340030 None:intergenic 50.0%
TCTAAGCTGCTGCTGCAAGA+GGG - chr1.2:69339741-69339760 None:intergenic 50.0%
TTGCTGTGAGAGGAGATTGG+AGG + chr1.2:69340579-69340598 MS.gene60591:CDS 50.0%
! CACTACAAGAGAAAGCACGG+AGG + chr1.2:69340521-69340540 MS.gene60591:CDS 50.0%
! TCTTTCAGTGGTCTTGCCCT+TGG - chr1.2:69340482-69340501 None:intergenic 50.0%
!! CGAGTTTGGGAGGTATTTGG+TGG - chr1.2:69339803-69339822 None:intergenic 50.0%
!! GTGCGAGTTTGGGAGGTATT+TGG - chr1.2:69339806-69339825 None:intergenic 50.0%
TGGCCATGCTCCACACACAT+TGG + chr1.2:69340700-69340719 MS.gene60591:CDS 55.0%
TTCCTCTCTCTTGCTCCTCC+TGG + chr1.2:69339777-69339796 MS.gene60591:CDS 55.0%
!! TTGGGAGGTATTTGGTGGCC+AGG - chr1.2:69339798-69339817 None:intergenic 55.0%
! GGATGAGGGGGTGCGAGTTT+GGG - chr1.2:69339816-69339835 None:intergenic 60.0%
!! GGAGGTATTTGGTGGCCAGG+AGG - chr1.2:69339795-69339814 None:intergenic 60.0%
GGCCAGGAGGAGCAAGAGAG+AGG - chr1.2:69339782-69339801 None:intergenic 65.0%
! GGGATGAGGGGGTGCGAGTT+TGG - chr1.2:69339817-69339836 None:intergenic 65.0%
! TGAGGGGGTGCGAGTTTGGG+AGG - chr1.2:69339813-69339832 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 69339696 69340986 69339696 ID=MS.gene60591
chr1.2 mRNA 69339696 69340986 69339696 ID=MS.gene60591.t1;Parent=MS.gene60591
chr1.2 exon 69339696 69340088 69339696 ID=MS.gene60591.t1.exon1;Parent=MS.gene60591.t1
chr1.2 CDS 69339696 69340088 69339696 ID=cds.MS.gene60591.t1;Parent=MS.gene60591.t1
chr1.2 exon 69340341 69340748 69340341 ID=MS.gene60591.t1.exon2;Parent=MS.gene60591.t1
chr1.2 CDS 69340341 69340748 69340341 ID=cds.MS.gene60591.t1;Parent=MS.gene60591.t1
chr1.2 exon 69340945 69340986 69340945 ID=MS.gene60591.t1.exon3;Parent=MS.gene60591.t1
chr1.2 CDS 69340945 69340986 69340945 ID=cds.MS.gene60591.t1;Parent=MS.gene60591.t1
Gene Sequence

>MS.gene60591

ATGCAAACTCATCATCAGTACTACTCATTCTCTTGTGAGAGTCCCTCTTGCAGCAGCAGCTTAGATGATGAAGATTCCATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAAATACCTCCCAAACTCGCACCCCCTCATCCCACTATTACTACTACTATCCCTCCCTTGCATCAAATACCTATTTCTACTACTACCTCTCTTCACCATGACCATACTTGTGCTGTAAATGTAGCACTTAATGCCTTAATTAATCCAACTTTCACTTCCAAACCATCTCACACTCCCATTATTCCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGGTTCATCCATTATTATATTTTTATCCTTTATTTTTACTATATCATGATTAAATATCTGATACAACATTTTTCTCTCATATGAAACATAAACCTTGCCTTTAAATTAATCATTCATTAGCACTAATATAGTGTCATTTTTGTGCACTTTAATTTTCTTCCATGAAAGAATCATATTGAGTTTACTATATTAATATCAAAACATGATTCATATATATATGGTACTAGTTACGATATTATTGTATTGTATGGTAGATGCATATGTGGGGACATGGATCTCAATATAGGAAAGGACCGGAGTCTCTAAAAGGGCCAAAACCAGCATCATCTTCATCAATGCTGAAACTACCATGCTATTGTTGTGCTGAGGGTTGCAGAAACAACATAAACTATCCAAGGGCAAGACCACTGAAAGATTTCAGAACCCTTCAAACACACTACAAGAGAAAGCACGGAGGGAAATCATTCGAGTGCAGAAAGTGTAGGAAGACATTTGCTGTGAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCACTAAAAGATCACGTTCGTGCGTTTGGTAATGGCCATGCTCCACACACATTGGAATCTTTGAGTTTTGATGAAAATAAAGTAAATGAAAATTACATGGAAGAAGAAGAAGAAAGTGGAAGTGAAGATGAAGACAATAACAGTGAAGTTGTTTTTAGTTTGAATTAAAACAAAATAGATGTACTGTTTGTATGATGTTTGGTTTTTTTGTTGTTGTTGTAAACTAGTAGTACTTGGATTGATCCATCATGTTTGTCTCTTTGTTTGTTTCTGATAGAAAGAGAGTGAAAAGGAGAGTGGGAAGAAAGAGACAGAGTGA
Protein sequence

>MS.gene60591.t1

MQTHHQYYSFSCESPSCSSSLDDEDSIFLSLAPPGHQIPPKLAPPHPTITTTIPPLHQIPISTTTSLHHDHTCAVNVALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDENKKESEKESGKKETE