AlfalfaGEDB | MS.gene60591

M. sativa cultivar XinJiangDaYe / MS.gene60591

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60591.t1	RHN81404.1	90.3	267	26	0	1	267	1	267	1.00E-139	506.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60591.t1	Q9FX68	63.8	246	65	4	23	258	12	243	3.6e-85	316.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60591.t1	A0A072VZH1	90.3	267	26	0	1	267	1	267	7.3e-140	506.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene60591.t1	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60591.t1	MTR_1g093095	97.753	267	6	0	1	267	1	267	0.0	501
MS.gene60591.t1	MTR_4g059870	34.507	142	81	4	109	249	61	191	5.27e-20	89.7
MS.gene60591.t1	MTR_1g112270	35.862	145	78	5	107	249	65	196	5.59e-20	89.7
MS.gene60591.t1	MTR_1g112270	35.862	145	78	5	107	249	76	207	6.16e-20	89.7
MS.gene60591.t1	MTR_1g094115	36.429	140	74	5	112	249	56	182	9.47e-20	89.0
MS.gene60591.t1	MTR_1g016010	34.161	161	91	6	91	249	47	194	1.14e-19	88.6
MS.gene60591.t1	MTR_1g094115	35.172	145	79	5	107	249	68	199	1.28e-19	88.6
MS.gene60591.t1	MTR_8g017210	33.333	156	89	6	109	262	85	227	1.42e-19	88.6
MS.gene60591.t1	MTR_2g093960	35.211	142	80	4	109	249	55	185	2.95e-19	87.0
MS.gene60591.t1	MTR_2g099990	35.172	145	79	6	107	249	67	198	1.04e-18	85.9

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60591.t1	AT1G13290	65.854	246	60	5	23	258	12	243	1.19e-108	317
MS.gene60591.t1	AT3G57670	73.077	182	45	2	99	280	201	378	9.99e-98	292
MS.gene60591.t1	AT1G51220	55.000	260	100	5	6	264	81	324	9.48e-95	283
MS.gene60591.t1	AT3G20880	69.780	182	48	2	97	278	238	412	4.79e-94	283
MS.gene60591.t1	AT1G08290	71.264	174	44	3	99	271	164	332	1.33e-92	277
MS.gene60591.t1	AT1G34790	75.159	157	36	1	100	256	130	283	3.47e-88	265
MS.gene60591.t1	AT1G34370	41.176	153	84	5	107	255	27	177	5.29e-26	103
MS.gene60591.t1	AT1G34370	41.176	153	84	5	107	255	237	387	2.82e-25	105
MS.gene60591.t1	AT1G34370	41.176	153	84	5	107	255	237	387	2.82e-25	105
MS.gene60591.t1	AT5G22890	40.645	155	84	7	106	255	209	360	2.60e-24	100

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Find 81 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGGTAGGACCAACA+AGG	0.677453	1.2:-69340019	None:intergenic
AAACAACATAAACTATCCAA+GGG	0.649476	1.2:+69340463	MS.gene60591:CDS
AAAGAGAGTGAAAAGGAGAG+TGG	0.505386	1.2:+69340945	MS.gene60591:CDS
AAAGATCACGTTCGTGCGTT+TGG	0.349116	1.2:+69340674	MS.gene60591:CDS
AAAGGACCGGAGTCTCTAAA+AGG	0.306782	1.2:+69340374	MS.gene60591:CDS
AAGAGAGTGAAAAGGAGAGT+GGG	0.502439	1.2:+69340946	MS.gene60591:CDS
AAGGACCGGAGTCTCTAAAA+GGG	0.557565	1.2:+69340375	MS.gene60591:CDS
AATGGGAGTGTGAGATGGTT+TGG	0.355414	1.2:-69339961	None:intergenic
ACAAGGATTTGAGCAGGAGA+AGG	0.531708	1.2:-69340002	None:intergenic
ACACACTACAAGAGAAAGCA+CGG	0.625692	1.2:+69340518	MS.gene60591:CDS

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGAGACAAACATGA+TGG	-	chr1.2:69340914-69340933	None:intergenic	30.0%
AGAAATAGGTATTTGATGCA+AGG	-	chr1.2:69339862-69339881	None:intergenic	30.0%
GAAACAACATAAACTATCCA+AGG	+	chr1.2:69340462-69340481	MS.gene60591:CDS	30.0%
GAAATAGGTATTTGATGCAA+GGG	-	chr1.2:69339861-69339880	None:intergenic	30.0%
GATCCAATATTGAGGAATAA+TGG	-	chr1.2:69339982-69340001	None:intergenic	30.0%
TGTACTGTTTGTATGATGTT+TGG	+	chr1.2:69340847-69340866	MS.gene60591:intron	30.0%
TGTTGTAAACTAGTAGTACT+TGG	+	chr1.2:69340882-69340901	MS.gene60591:intron	30.0%
AGAGAGGTAGTAGTAGAAAT+AGG	-	chr1.2:69339876-69339895	None:intergenic	35.0%
AGGGATAGTAGTAGTAATAG+TGG	-	chr1.2:69339838-69339857	None:intergenic	35.0%
ATCTCAATATAGGAAAGGAC+CGG	+	chr1.2:69340361-69340380	MS.gene60591:CDS	35.0%

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	69339696	69340986	69339696	ID=MS.gene60591
chr1.2	mRNA	69339696	69340986	69339696	ID=MS.gene60591.t1;Parent=MS.gene60591
chr1.2	exon	69339696	69340088	69339696	ID=MS.gene60591.t1.exon1;Parent=MS.gene60591.t1
chr1.2	CDS	69339696	69340088	69339696	ID=cds.MS.gene60591.t1;Parent=MS.gene60591.t1
chr1.2	exon	69340341	69340748	69340341	ID=MS.gene60591.t1.exon2;Parent=MS.gene60591.t1
chr1.2	CDS	69340341	69340748	69340341	ID=cds.MS.gene60591.t1;Parent=MS.gene60591.t1
chr1.2	exon	69340945	69340986	69340945	ID=MS.gene60591.t1.exon3;Parent=MS.gene60591.t1
chr1.2	CDS	69340945	69340986	69340945	ID=cds.MS.gene60591.t1;Parent=MS.gene60591.t1

Gene Sequence

>MS.gene60591

ATGCAAACTCATCATCAGTACTACTCATTCTCTTGTGAGAGTCCCTCTTGCAGCAGCAGCTTAGATGATGAAGATTCCATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAAATACCTCCCAAACTCGCACCCCCTCATCCCACTATTACTACTACTATCCCTCCCTTGCATCAAATACCTATTTCTACTACTACCTCTCTTCACCATGACCATACTTGTGCTGTAAATGTAGCACTTAATGCCTTAATTAATCCAACTTTCACTTCCAAACCATCTCACACTCCCATTATTCCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGGTTCATCCATTATTATATTTTTATCCTTTATTTTTACTATATCATGATTAAATATCTGATACAACATTTTTCTCTCATATGAAACATAAACCTTGCCTTTAAATTAATCATTCATTAGCACTAATATAGTGTCATTTTTGTGCACTTTAATTTTCTTCCATGAAAGAATCATATTGAGTTTACTATATTAATATCAAAACATGATTCATATATATATGGTACTAGTTACGATATTATTGTATTGTATGGTAGATGCATATGTGGGGACATGGATCTCAATATAGGAAAGGACCGGAGTCTCTAAAAGGGCCAAAACCAGCATCATCTTCATCAATGCTGAAACTACCATGCTATTGTTGTGCTGAGGGTTGCAGAAACAACATAAACTATCCAAGGGCAAGACCACTGAAAGATTTCAGAACCCTTCAAACACACTACAAGAGAAAGCACGGAGGGAAATCATTCGAGTGCAGAAAGTGTAGGAAGACATTTGCTGTGAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCACTAAAAGATCACGTTCGTGCGTTTGGTAATGGCCATGCTCCACACACATTGGAATCTTTGAGTTTTGATGAAAATAAAGTAAATGAAAATTACATGGAAGAAGAAGAAGAAAGTGGAAGTGAAGATGAAGACAATAACAGTGAAGTTGTTTTTAGTTTGAATTAAAACAAAATAGATGTACTGTTTGTATGATGTTTGGTTTTTTTGTTGTTGTTGTAAACTAGTAGTACTTGGATTGATCCATCATGTTTGTCTCTTTGTTTGTTTCTGATAGAAAGAGAGTGAAAAGGAGAGTGGGAAGAAAGAGACAGAGTGA

Protein sequence

>MS.gene60591.t1

MQTHHQYYSFSCESPSCSSSLDDEDSIFLSLAPPGHQIPPKLAPPHPTITTTIPPLHQIPISTTTSLHHDHTCAVNVALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDENKKESEKESGKKETE