Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60731.t1 | XP_024641768.1 | 89.1 | 468 | 38 | 3 | 3 | 463 | 18 | 479 | 2.30E-229 | 804.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60731.t1 | Q84WW6 | 58.0 | 474 | 171 | 8 | 3 | 455 | 23 | 489 | 4.5e-141 | 502.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60731.t1 | A0A396JTI7 | 89.1 | 468 | 38 | 3 | 3 | 463 | 18 | 479 | 1.6e-229 | 804.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60731.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60731.t1 | MTR_1g098000 | 90.022 | 461 | 33 | 3 | 10 | 463 | 36 | 490 | 0.0 | 825 |
| MS.gene60731.t1 | MTR_1g098370 | 89.588 | 461 | 35 | 3 | 10 | 463 | 39 | 493 | 0.0 | 822 |
| MS.gene60731.t1 | MTR_1g098030 | 82.383 | 193 | 12 | 2 | 227 | 418 | 30 | 201 | 2.65e-101 | 301 |
| MS.gene60731.t1 | MTR_3g088625 | 36.555 | 238 | 131 | 8 | 1 | 228 | 1257 | 1484 | 5.64e-39 | 151 |
| MS.gene60731.t1 | MTR_3g088625 | 36.555 | 238 | 131 | 8 | 1 | 228 | 1151 | 1378 | 6.79e-39 | 151 |
| MS.gene60731.t1 | MTR_6g059310 | 37.619 | 210 | 117 | 5 | 7 | 210 | 52 | 253 | 1.34e-31 | 124 |
| MS.gene60731.t1 | MTR_6g059310 | 37.619 | 210 | 117 | 5 | 7 | 210 | 52 | 253 | 1.67e-31 | 124 |
| MS.gene60731.t1 | MTR_0071s0100 | 43.333 | 150 | 75 | 3 | 66 | 212 | 211 | 353 | 3.58e-29 | 118 |
| MS.gene60731.t1 | MTR_5g016870 | 35.838 | 173 | 86 | 5 | 27 | 187 | 672 | 831 | 9.43e-18 | 86.7 |
| MS.gene60731.t1 | MTR_1g048950 | 38.961 | 154 | 68 | 8 | 64 | 204 | 389 | 529 | 2.03e-17 | 85.1 |
| MS.gene60731.t1 | MTR_8g078490 | 34.146 | 164 | 80 | 5 | 64 | 207 | 1097 | 1252 | 5.16e-17 | 84.7 |
| MS.gene60731.t1 | MTR_1g012910 | 35.625 | 160 | 84 | 7 | 63 | 207 | 515 | 670 | 5.65e-17 | 84.0 |
| MS.gene60731.t1 | MTR_1g012890 | 36.250 | 160 | 83 | 7 | 63 | 207 | 212 | 367 | 9.18e-17 | 82.0 |
| MS.gene60731.t1 | MTR_7g055660 | 33.529 | 170 | 91 | 5 | 27 | 186 | 541 | 698 | 1.07e-16 | 83.2 |
| MS.gene60731.t1 | MTR_1g086980 | 34.706 | 170 | 88 | 5 | 27 | 186 | 622 | 778 | 1.30e-16 | 83.2 |
| MS.gene60731.t1 | MTR_1g086980 | 34.706 | 170 | 88 | 5 | 27 | 186 | 632 | 788 | 1.45e-16 | 82.8 |
| MS.gene60731.t1 | MTR_1g086980 | 34.706 | 170 | 88 | 5 | 27 | 186 | 642 | 798 | 1.46e-16 | 82.8 |
| MS.gene60731.t1 | MTR_1g086980 | 34.706 | 170 | 88 | 5 | 27 | 186 | 591 | 747 | 1.58e-16 | 82.8 |
| MS.gene60731.t1 | MTR_1g086980 | 34.706 | 170 | 88 | 5 | 27 | 186 | 570 | 726 | 1.63e-16 | 82.8 |
| MS.gene60731.t1 | MTR_1g086980 | 34.706 | 170 | 88 | 5 | 27 | 186 | 442 | 598 | 1.82e-16 | 82.4 |
| MS.gene60731.t1 | MTR_1g012910 | 35.625 | 160 | 84 | 7 | 63 | 207 | 352 | 507 | 1.83e-16 | 82.0 |
| MS.gene60731.t1 | MTR_2g036060 | 35.385 | 130 | 77 | 3 | 91 | 217 | 1052 | 1177 | 3.43e-16 | 82.0 |
| MS.gene60731.t1 | MTR_2g036060 | 35.385 | 130 | 77 | 3 | 91 | 217 | 1077 | 1202 | 3.80e-16 | 82.0 |
| MS.gene60731.t1 | MTR_1g008230 | 35.484 | 155 | 87 | 5 | 59 | 207 | 886 | 1033 | 9.01e-16 | 80.5 |
| MS.gene60731.t1 | MTR_8g027725 | 35.758 | 165 | 87 | 6 | 52 | 207 | 794 | 948 | 9.17e-16 | 80.5 |
| MS.gene60731.t1 | MTR_8g027725 | 35.758 | 165 | 87 | 6 | 52 | 207 | 779 | 933 | 1.08e-15 | 80.5 |
| MS.gene60731.t1 | MTR_7g021365 | 35.897 | 156 | 83 | 4 | 82 | 229 | 912 | 1058 | 1.12e-15 | 80.5 |
| MS.gene60731.t1 | MTR_5g018850 | 33.758 | 157 | 80 | 4 | 65 | 203 | 1352 | 1502 | 1.19e-15 | 80.5 |
| MS.gene60731.t1 | MTR_1g008230 | 35.256 | 156 | 88 | 5 | 59 | 208 | 608 | 756 | 1.50e-15 | 79.7 |
| MS.gene60731.t1 | MTR_4g132610 | 33.962 | 159 | 77 | 5 | 65 | 203 | 892 | 1042 | 1.80e-15 | 79.7 |
| MS.gene60731.t1 | MTR_7g117355 | 37.736 | 159 | 78 | 7 | 59 | 207 | 816 | 963 | 2.50e-15 | 79.3 |
| MS.gene60731.t1 | MTR_3g091310 | 34.810 | 158 | 84 | 6 | 59 | 207 | 915 | 1062 | 3.30e-15 | 79.0 |
| MS.gene60731.t1 | MTR_3g091310 | 34.810 | 158 | 84 | 6 | 59 | 207 | 821 | 968 | 3.80e-15 | 78.6 |
| MS.gene60731.t1 | MTR_7g445600 | 36.508 | 126 | 54 | 6 | 66 | 185 | 251 | 356 | 2.98e-12 | 68.2 |
| MS.gene60731.t1 | MTR_7g088370 | 29.762 | 168 | 84 | 6 | 66 | 207 | 545 | 704 | 3.75e-12 | 68.9 |
| MS.gene60731.t1 | MTR_7g109560 | 37.069 | 116 | 60 | 3 | 76 | 187 | 623 | 729 | 1.13e-11 | 67.4 |
| MS.gene60731.t1 | MTR_7g450730 | 29.108 | 213 | 107 | 10 | 22 | 203 | 301 | 500 | 4.01e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60731.t1 | AT1G76710 | 58.017 | 474 | 171 | 8 | 3 | 455 | 23 | 489 | 0.0 | 516 |
| MS.gene60731.t1 | AT1G76710 | 58.017 | 474 | 171 | 8 | 3 | 455 | 23 | 489 | 0.0 | 516 |
| MS.gene60731.t1 | AT1G76710 | 56.936 | 483 | 171 | 9 | 3 | 455 | 23 | 498 | 4.68e-178 | 508 |
| MS.gene60731.t1 | AT1G76710 | 54.890 | 501 | 171 | 9 | 3 | 455 | 23 | 516 | 2.03e-175 | 502 |
| MS.gene60731.t1 | AT1G77300 | 36.441 | 236 | 129 | 7 | 3 | 228 | 961 | 1185 | 5.19e-40 | 154 |
| MS.gene60731.t1 | AT1G77300 | 36.441 | 236 | 129 | 7 | 3 | 228 | 961 | 1185 | 5.38e-40 | 154 |
| MS.gene60731.t1 | AT3G59960 | 42.581 | 155 | 79 | 3 | 59 | 210 | 105 | 252 | 1.74e-27 | 111 |
| MS.gene60731.t1 | AT3G59960 | 42.581 | 155 | 79 | 3 | 59 | 210 | 105 | 252 | 1.74e-27 | 111 |
| MS.gene60731.t1 | AT3G59960 | 42.581 | 155 | 79 | 3 | 59 | 210 | 105 | 252 | 1.74e-27 | 111 |
| MS.gene60731.t1 | AT4G30860 | 42.667 | 150 | 76 | 3 | 66 | 212 | 327 | 469 | 5.47e-27 | 114 |
| MS.gene60731.t1 | AT3G59960 | 42.581 | 155 | 79 | 3 | 59 | 210 | 105 | 252 | 9.10e-27 | 110 |
| MS.gene60731.t1 | AT2G44150 | 41.935 | 155 | 80 | 3 | 59 | 210 | 110 | 257 | 1.07e-26 | 110 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT5G42400 | 41.379 | 116 | 64 | 3 | 91 | 203 | 1269 | 1383 | 1.05e-18 | 90.1 |
| MS.gene60731.t1 | AT1G05830 | 36.552 | 145 | 75 | 4 | 82 | 218 | 926 | 1061 | 2.25e-16 | 82.8 |
| MS.gene60731.t1 | AT1G05830 | 36.552 | 145 | 75 | 4 | 82 | 218 | 926 | 1061 | 2.25e-16 | 82.8 |
| MS.gene60731.t1 | AT1G05830 | 36.552 | 145 | 75 | 4 | 82 | 218 | 926 | 1061 | 2.25e-16 | 82.8 |
| MS.gene60731.t1 | AT1G05830 | 36.552 | 145 | 75 | 4 | 82 | 218 | 926 | 1061 | 2.25e-16 | 82.8 |
| MS.gene60731.t1 | AT2G35160 | 37.107 | 159 | 70 | 9 | 66 | 207 | 612 | 757 | 3.43e-16 | 81.6 |
| MS.gene60731.t1 | AT2G35160 | 37.107 | 159 | 70 | 9 | 66 | 207 | 648 | 793 | 3.56e-16 | 81.6 |
| MS.gene60731.t1 | AT2G35160 | 37.107 | 159 | 70 | 9 | 66 | 207 | 648 | 793 | 3.56e-16 | 81.6 |
| MS.gene60731.t1 | AT2G35160 | 37.107 | 159 | 70 | 9 | 66 | 207 | 648 | 793 | 3.56e-16 | 81.6 |
| MS.gene60731.t1 | AT2G35160 | 37.107 | 159 | 70 | 9 | 66 | 207 | 648 | 793 | 3.56e-16 | 81.6 |
| MS.gene60731.t1 | AT2G23380 | 40.708 | 113 | 60 | 2 | 76 | 187 | 763 | 869 | 4.27e-16 | 81.6 |
| MS.gene60731.t1 | AT2G23380 | 40.708 | 113 | 60 | 2 | 76 | 187 | 536 | 642 | 4.32e-16 | 81.3 |
| MS.gene60731.t1 | AT2G31650 | 37.241 | 145 | 74 | 4 | 82 | 218 | 905 | 1040 | 4.83e-16 | 81.6 |
| MS.gene60731.t1 | AT4G27910 | 34.810 | 158 | 84 | 6 | 59 | 207 | 879 | 1026 | 6.44e-16 | 81.3 |
| MS.gene60731.t1 | AT4G02020 | 34.118 | 170 | 89 | 5 | 27 | 186 | 667 | 823 | 7.59e-16 | 80.9 |
| MS.gene60731.t1 | AT1G02580 | 31.579 | 171 | 95 | 6 | 33 | 195 | 518 | 674 | 1.06e-15 | 80.1 |
| MS.gene60731.t1 | AT3G61740 | 36.250 | 160 | 80 | 7 | 59 | 207 | 833 | 981 | 5.60e-14 | 75.1 |
| MS.gene60731.t1 | AT3G61740 | 33.889 | 180 | 97 | 7 | 39 | 207 | 849 | 1017 | 6.31e-14 | 74.7 |
| MS.gene60731.t1 | AT5G53430 | 33.544 | 158 | 86 | 6 | 59 | 207 | 895 | 1042 | 3.23e-13 | 72.8 |
| MS.gene60731.t1 | AT2G23740 | 34.058 | 138 | 67 | 4 | 65 | 184 | 1217 | 1348 | 7.61e-12 | 68.6 |
| MS.gene60731.t1 | AT2G23740 | 34.058 | 138 | 67 | 4 | 65 | 184 | 1224 | 1355 | 7.75e-12 | 68.6 |
| MS.gene60731.t1 | AT2G23740 | 34.058 | 138 | 67 | 4 | 65 | 184 | 1224 | 1355 | 7.75e-12 | 68.6 |
| MS.gene60731.t1 | AT2G23740 | 34.058 | 138 | 67 | 4 | 65 | 184 | 1224 | 1355 | 7.75e-12 | 68.6 |
Find 101 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTTGAATTTCATAAGTA+TGG | 0.229282 | 1.2:+71289099 | None:intergenic |
| GTGCTTCCTTTGATGCTAAA+AGG | 0.263819 | 1.2:+71287336 | None:intergenic |
| CATCTCTACCAAAAGATCTA+AGG | 0.291533 | 1.2:-71287414 | MS.gene60731:CDS |
| CAAGATCCTGTTTGGTATCT+TGG | 0.298263 | 1.2:+71287492 | None:intergenic |
| CAAGATTTATAAACCATTCC+TGG | 0.303845 | 1.2:-71288925 | MS.gene60731:intron |
| GCACTGGAAGATATTCCTAT+TGG | 0.334570 | 1.2:-71288704 | MS.gene60731:CDS |
| CTAACGATGCGGAACAAATT+CGG | 0.338200 | 1.2:+71301981 | None:intergenic |
| CAAACTGTGAGACAAGAAAA+TGG | 0.346413 | 1.2:-71288760 | MS.gene60731:CDS |
| AGCAGGAGGATACTTATCTA+TGG | 0.346424 | 1.2:-71288143 | MS.gene60731:intron |
| TTTGCTTGGCCGAGTGCCCT+TGG | 0.366390 | 1.2:+71286655 | None:intergenic |
| CATAAGTATGGATCTGCGTT+TGG | 0.380557 | 1.2:+71289111 | None:intergenic |
| CGAATTTGTTCCGCATCGTT+AGG | 0.389054 | 1.2:-71301980 | MS.gene60731:intron |
| AAGATCCTGTTTGGTATCTT+GGG | 0.400986 | 1.2:+71287493 | None:intergenic |
| AAAACTGAAGGCCGAGGGTG+GGG | 0.406258 | 1.2:-71289315 | MS.gene60731:CDS |
| ATTCTTTATACAATGAAATA+CGG | 0.412721 | 1.2:-71286822 | MS.gene60731:CDS |
| TCCTCCGCAGAGTCATATAA+AGG | 0.419793 | 1.2:+71287695 | None:intergenic |
| CTCAAATGTTCTGAATTCCT+TGG | 0.432418 | 1.2:-71288611 | MS.gene60731:CDS |
| TTTCATTGTATAAAGAATCA+AGG | 0.435719 | 1.2:+71286827 | None:intergenic |
| TTTGTTTGTTTATTTCATAC+AGG | 0.438491 | 1.2:-71289185 | MS.gene60731:CDS |
| ATGCCACTAGGGCAAAATCC+AGG | 0.447651 | 1.2:+71300550 | None:intergenic |
| CTGAATTCGATTGGGATCAA+TGG | 0.457029 | 1.2:-71287572 | MS.gene60731:CDS |
| TATTCCTATTGGAACTGAAC+TGG | 0.465129 | 1.2:-71288693 | MS.gene60731:CDS |
| CGCATTCGAAGTAACTCTGC+TGG | 0.467215 | 1.2:-71287446 | MS.gene60731:CDS |
| ATCCATACTTATGAAATTCA+AGG | 0.467960 | 1.2:-71289101 | MS.gene60731:intron |
| TTGAAGTGGTTTACCAGGAA+TGG | 0.469527 | 1.2:+71288912 | None:intergenic |
| CAGCACTGAATGCGCACCCC+TGG | 0.470590 | 1.2:-71300568 | MS.gene60731:CDS |
| AGTAGCAGAGAAGTGGATAC+AGG | 0.474675 | 1.2:-71286749 | MS.gene60731:CDS |
| GTTCAACCGCTGAATTCGAT+TGG | 0.477723 | 1.2:-71287581 | MS.gene60731:CDS |
| CCTGACAGTGCATGTGGAGA+TGG | 0.479524 | 1.2:-71300609 | MS.gene60731:CDS |
| TTTGTTTATTTCATACAGGC+AGG | 0.479914 | 1.2:-71289181 | MS.gene60731:CDS |
| TCCATCGATGCAACTAGAAA+AGG | 0.481552 | 1.2:-71288956 | MS.gene60731:CDS |
| TATGCCAGTTCAGTTCCAAT+AGG | 0.481653 | 1.2:+71288689 | None:intergenic |
| TCGATTGGGATCAATGGCTT+AGG | 0.486502 | 1.2:-71287566 | MS.gene60731:CDS |
| AGCTTTCAGTATAATAGCCA+TGG | 0.489595 | 1.2:+71287634 | None:intergenic |
| TTCTCGTGTTCTACAATGGC+AGG | 0.493511 | 1.2:+71286799 | None:intergenic |
| AGGGCACTCGGCCAAGCAAA+AGG | 0.495569 | 1.2:-71286652 | MS.gene60731:CDS |
| AAACTGAAGGCCGAGGGTGG+GGG | 0.498503 | 1.2:-71289314 | MS.gene60731:intron |
| TTCAACCGCTGAATTCGATT+GGG | 0.499606 | 1.2:-71287580 | MS.gene60731:CDS |
| CCATCTCCACATGCACTGTC+AGG | 0.499632 | 1.2:+71300609 | None:intergenic |
| ATCTCTACCAAAAGATCTAA+GGG | 0.502128 | 1.2:-71287413 | MS.gene60731:CDS |
| TGTCGTAGATACACTGTCTT+GGG | 0.502526 | 1.2:+71286771 | None:intergenic |
| AAGAGTTGGAATATTTGCAC+TGG | 0.522066 | 1.2:-71288720 | MS.gene60731:CDS |
| TTCATTGTATAAAGAATCAA+GGG | 0.526900 | 1.2:+71286828 | None:intergenic |
| TAAAACTGAAGGCCGAGGGT+GGG | 0.529880 | 1.2:-71289316 | MS.gene60731:CDS |
| CAGGGGTGCGCATTCAGTGC+TGG | 0.530085 | 1.2:+71300569 | None:intergenic |
| TGCCACTAGGGCAAAATCCA+GGG | 0.535391 | 1.2:+71300551 | None:intergenic |
| AATGGTTTATAAATCTTGCA+AGG | 0.536559 | 1.2:+71288930 | None:intergenic |
| ATGTTGCTTGTACTGCTCCA+AGG | 0.540415 | 1.2:-71286672 | MS.gene60731:CDS |
| ACAAAGTTATTTAAAACTGA+AGG | 0.541788 | 1.2:-71289327 | MS.gene60731:CDS |
| CTGTCGTAGATACACTGTCT+TGG | 0.543309 | 1.2:+71286770 | None:intergenic |
| ACAAGAAAATGGAATGTCAT+GGG | 0.544715 | 1.2:-71288749 | MS.gene60731:CDS |
| ATTGATGCAAAGTATGCAGC+TGG | 0.547593 | 1.2:-71287359 | MS.gene60731:CDS |
| TTTAGCATCAAAGGAAGCAC+AGG | 0.547737 | 1.2:-71287333 | MS.gene60731:CDS |
| TGTTGCTTGTACTGCTCCAA+GGG | 0.548204 | 1.2:-71286671 | MS.gene60731:CDS |
| TGAATGGTTTGGAGGTGCAA+AGG | 0.560782 | 1.2:-71288654 | MS.gene60731:CDS |
| CTGACAGTGCATGTGGAGAT+GGG | 0.561478 | 1.2:-71300608 | MS.gene60731:CDS |
| GCAGGAGGATACTTATCTAT+GGG | 0.561610 | 1.2:-71288142 | MS.gene60731:intron |
| GTACTCCCAAGATACCAAAC+AGG | 0.564017 | 1.2:-71287498 | MS.gene60731:CDS |
| CTACGACAGTAGCAGAGAAG+TGG | 0.567208 | 1.2:-71286756 | MS.gene60731:CDS |
| AGCATCAAAGGAAGCACAGG+AGG | 0.568189 | 1.2:-71287330 | MS.gene60731:CDS |
| GACAAGAAAATGGAATGTCA+TGG | 0.568296 | 1.2:-71288750 | MS.gene60731:CDS |
| GAAAACTGAAATAGAAAGCG+AGG | 0.569665 | 1.2:-71287531 | MS.gene60731:CDS |
| GCATAAGAAGCAGAAGGAGG+AGG | 0.570658 | 1.2:-71300670 | MS.gene60731:CDS |
| ATATTGCTATATGTGAATGC+AGG | 0.572676 | 1.2:-71300647 | MS.gene60731:CDS |
| TTAAAACTGAAGGCCGAGGG+TGG | 0.572779 | 1.2:-71289317 | MS.gene60731:CDS |
| TGTACTGCTCCAAGGGCACT+CGG | 0.574893 | 1.2:-71286664 | MS.gene60731:CDS |
| ATCAATTACGGATTAGATGA+GGG | 0.583144 | 1.2:+71286583 | None:intergenic |
| CATCAATTACGGATTAGATG+AGG | 0.583480 | 1.2:+71286582 | None:intergenic |
| GATGAACTTACGTCAAATGT+TGG | 0.583744 | 1.2:-71287674 | MS.gene60731:CDS |
| TATGGGAAGATGATGATGAC+AGG | 0.584972 | 1.2:-71288125 | MS.gene60731:intron |
| TTCCTTGGAGCAAAATCTCG+TGG | 0.586918 | 1.2:-71288596 | MS.gene60731:CDS |
| TTATTTAAAACTGAAGGCCG+AGG | 0.589346 | 1.2:-71289321 | MS.gene60731:CDS |
| ATCCTTCTCGTGTTCTACAA+TGG | 0.593834 | 1.2:+71286795 | None:intergenic |
| GGCTTCCTGCCTAAAACTCA+AGG | 0.598288 | 1.2:-71286728 | MS.gene60731:CDS |
| ACTGAAAGCTGAAGAACCAT+CGG | 0.600098 | 1.2:-71287621 | MS.gene60731:CDS |
| GTGCAGGCATAAGAAGCAGA+AGG | 0.601872 | 1.2:-71300676 | MS.gene60731:intron |
| TGCCATTGTAGAACACGAGA+AGG | 0.601931 | 1.2:-71286797 | MS.gene60731:CDS |
| TGGACAGAGTGAACAATCCA+TGG | 0.605363 | 1.2:-71287651 | MS.gene60731:CDS |
| TTTAAAACAGTGGACTCCGA+TGG | 0.605914 | 1.2:+71287605 | None:intergenic |
| GAAAAGAAAAGATGACGCTA+CGG | 0.608952 | 1.2:-71286854 | MS.gene60731:CDS |
| CTCTACCAAAAGATCTAAGG+GGG | 0.609097 | 1.2:-71287411 | MS.gene60731:CDS |
| TCCTTTATATGACTCTGCGG+AGG | 0.618388 | 1.2:-71287696 | MS.gene60731:CDS |
| TATTTAAAACTGAAGGCCGA+GGG | 0.619845 | 1.2:-71289320 | MS.gene60731:CDS |
| GCAAAGGTTCGCTGCCTCTG+TGG | 0.623435 | 1.2:-71288638 | MS.gene60731:CDS |
| GAACTTACGTCAAATGTTGG+TGG | 0.635400 | 1.2:-71287671 | MS.gene60731:CDS |
| GACGATCCTGACAGTGCATG+TGG | 0.639295 | 1.2:-71300615 | MS.gene60731:CDS |
| CAGTTTGTCATTGAATACTG+TGG | 0.640591 | 1.2:-71289157 | MS.gene60731:CDS |
| CAAGAAAATGGAATGTCATG+GGG | 0.642373 | 1.2:-71288748 | MS.gene60731:CDS |
| CGGTTGAACATTTAAAACAG+TGG | 0.645180 | 1.2:+71287595 | None:intergenic |
| AAAACTGAAATAGAAAGCGA+GGG | 0.645326 | 1.2:-71287530 | MS.gene60731:CDS |
| CAGGCATAAGAAGCAGAAGG+AGG | 0.647886 | 1.2:-71300673 | MS.gene60731:CDS |
| TTGATCCCAATCGAATTCAG+CGG | 0.659698 | 1.2:+71287575 | None:intergenic |
| GCCACTAGGGCAAAATCCAG+GGG | 0.662453 | 1.2:+71300552 | None:intergenic |
| AACATTTGAGCGCACCACAG+AGG | 0.676482 | 1.2:+71288624 | None:intergenic |
| GGGATCTTTACCTAACGATG+CGG | 0.684832 | 1.2:+71301970 | None:intergenic |
| TCTCTACCAAAAGATCTAAG+GGG | 0.690458 | 1.2:-71287412 | MS.gene60731:CDS |
| ATTCGAAGTAACTCTGCTGG+AGG | 0.692935 | 1.2:-71287443 | MS.gene60731:CDS |
| TCTACCAAAAGATCTAAGGG+GGG | 0.693195 | 1.2:-71287410 | MS.gene60731:CDS |
| AAGAAAATGGAATGTCATGG+GGG | 0.698806 | 1.2:-71288747 | MS.gene60731:CDS |
| AATTCCTTTATATGACTCTG+CGG | 0.704826 | 1.2:-71287699 | MS.gene60731:CDS |
| TTCCTGCCTAAAACTCAAGG+CGG | 0.738527 | 1.2:-71286725 | MS.gene60731:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 71286588 | 71302006 | 71286588 | ID=MS.gene60731 |
| chr1.2 | mRNA | 71286588 | 71302006 | 71286588 | ID=MS.gene60731.t1;Parent=MS.gene60731 |
| chr1.2 | exon | 71301981 | 71302006 | 71301981 | ID=MS.gene60731.t1.exon1;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71301981 | 71302006 | 71301981 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71300548 | 71300692 | 71300548 | ID=MS.gene60731.t1.exon2;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71300548 | 71300692 | 71300548 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71289315 | 71289376 | 71289315 | ID=MS.gene60731.t1.exon3;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71289315 | 71289376 | 71289315 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71289102 | 71289228 | 71289102 | ID=MS.gene60731.t1.exon4;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71289102 | 71289228 | 71289102 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71288926 | 71289011 | 71288926 | ID=MS.gene60731.t1.exon5;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71288926 | 71289011 | 71288926 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71288589 | 71288787 | 71288589 | ID=MS.gene60731.t1.exon6;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71288589 | 71288787 | 71288589 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71288126 | 71288160 | 71288126 | ID=MS.gene60731.t1.exon7;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71288126 | 71288160 | 71288126 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71287313 | 71287736 | 71287313 | ID=MS.gene60731.t1.exon8;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71287313 | 71287736 | 71287313 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| chr1.2 | exon | 71286588 | 71286875 | 71286588 | ID=MS.gene60731.t1.exon9;Parent=MS.gene60731.t1 |
| chr1.2 | CDS | 71286588 | 71286875 | 71286588 | ID=cds.MS.gene60731.t1;Parent=MS.gene60731.t1 |
| Gene Sequence |
| Protein sequence |