AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60797

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60797.t1 MTR_1g096430 96.689 151 5 0 1 151 1 151 2.15e-109 315
MS.gene60797.t1 MTR_5g021710 78.523 149 32 0 3 151 4 152 1.18e-88 262
MS.gene60797.t1 MTR_8g076110 75.168 149 37 0 3 151 2 150 6.21e-85 251
MS.gene60797.t1 MTR_4g036030 73.510 151 40 0 1 151 1 151 1.72e-81 244
MS.gene60797.t1 MTR_4g101680 67.683 164 44 1 1 155 1 164 3.39e-79 239
MS.gene60797.t1 MTR_5g012080 69.281 153 45 2 1 151 1 153 5.44e-74 225
MS.gene60797.t1 MTR_8g024480 76.336 131 31 0 4 134 12 142 4.86e-71 220
MS.gene60797.t1 MTR_4g035590 73.438 128 34 0 7 134 8 135 1.40e-68 211
MS.gene60797.t1 MTR_2g062730 73.485 132 34 1 4 134 7 138 3.46e-68 210
MS.gene60797.t1 MTR_6g477900 61.654 133 50 1 7 139 6 137 4.81e-58 181
MS.gene60797.t1 MTR_2g064090 61.481 135 51 1 7 141 6 139 5.36e-58 184
MS.gene60797.t1 MTR_5g076850 62.791 129 47 1 6 134 5 132 8.57e-56 185
MS.gene60797.t1 MTR_3g064580 57.857 140 58 1 6 145 5 143 2.90e-54 181
MS.gene60797.t1 MTR_3g435150 58.594 128 50 1 7 134 16 140 5.51e-52 167
MS.gene60797.t1 MTR_6g084430 53.623 138 61 1 3 140 1 135 8.56e-52 167
MS.gene60797.t1 MTR_2g064470 54.930 142 58 3 3 144 7 142 1.14e-51 167
MS.gene60797.t1 MTR_5g041940 52.381 147 64 2 7 153 3 143 1.67e-51 165
MS.gene60797.t1 MTR_4g081870 54.610 141 56 2 5 140 7 144 2.01e-51 165
MS.gene60797.t1 MTR_4g108760 53.846 143 61 2 7 147 17 156 3.14e-51 167
MS.gene60797.t1 MTR_2g078700 56.154 130 52 2 7 134 23 149 1.87e-50 166
MS.gene60797.t1 MTR_7g085220 51.429 140 56 2 4 134 5 141 4.49e-50 163
MS.gene60797.t1 MTR_1g008740 56.716 134 52 3 4 134 10 140 5.87e-50 163
MS.gene60797.t1 MTR_1g008740 56.716 134 52 3 4 134 24 154 5.98e-50 164
MS.gene60797.t1 MTR_5g014300 54.815 135 53 2 7 134 6 139 6.38e-50 163
MS.gene60797.t1 MTR_6g012670 53.147 143 64 1 7 149 20 159 8.61e-50 162
MS.gene60797.t1 MTR_3g070030 54.348 138 57 2 8 142 20 154 9.61e-50 163
MS.gene60797.t1 MTR_7g097090 52.414 145 63 3 2 144 5 145 1.71e-49 160
MS.gene60797.t1 MTR_4g098630 55.639 133 55 2 5 134 4 135 2.02e-49 161
MS.gene60797.t1 MTR_7g085260 55.303 132 52 2 7 134 17 145 4.96e-49 162
MS.gene60797.t1 MTR_3g116070 53.061 147 53 4 4 142 20 158 1.66e-48 160
MS.gene60797.t1 MTR_3g096920 55.224 134 56 2 1 134 1 130 2.71e-48 157
MS.gene60797.t1 MTR_1g090720 56.589 129 55 1 5 133 40 167 6.50e-48 161
MS.gene60797.t1 MTR_1g069805 51.724 145 64 3 2 144 5 145 7.30e-48 156
MS.gene60797.t1 MTR_3g096920 55.224 134 56 2 1 134 1 130 7.79e-48 157
MS.gene60797.t1 MTR_7g011130 57.600 125 50 1 10 134 22 143 1.00e-47 157
MS.gene60797.t1 MTR_7g005280 51.020 147 64 2 7 151 15 155 1.11e-47 155
MS.gene60797.t1 MTR_4g089135 51.429 140 58 3 2 134 5 141 1.11e-47 157
MS.gene60797.t1 MTR_3g088110 54.478 134 57 2 1 134 1 130 1.33e-47 155
MS.gene60797.t1 MTR_3g109340 52.632 133 58 2 4 134 19 148 2.03e-47 157
MS.gene60797.t1 MTR_3g109340 52.632 133 58 2 4 134 19 148 2.03e-47 157
MS.gene60797.t1 MTR_2g079990 53.906 128 56 1 7 134 16 140 2.11e-47 157
MS.gene60797.t1 MTR_8g094580 55.469 128 53 2 7 134 7 130 2.80e-47 155
MS.gene60797.t1 MTR_2g079990 53.488 129 57 1 6 134 15 140 2.97e-47 157
MS.gene60797.t1 MTR_6g032770 52.308 130 57 2 7 134 18 144 8.10e-47 156
MS.gene60797.t1 MTR_8g059170 53.125 128 57 1 7 134 14 138 8.75e-47 155
MS.gene60797.t1 MTR_2157s0010 51.825 137 60 2 7 140 8 141 1.37e-46 152
MS.gene60797.t1 MTR_2g080010 53.077 130 56 2 7 134 15 141 3.34e-46 154
MS.gene60797.t1 MTR_2g093810 54.264 129 54 2 8 134 15 140 5.90e-46 152
MS.gene60797.t1 MTR_7g011120 56.000 125 52 1 10 134 11 132 2.10e-45 150
MS.gene60797.t1 MTR_5g069030 54.135 133 60 1 7 139 25 156 2.28e-45 157
MS.gene60797.t1 MTR_6g011860 51.079 139 62 3 9 144 17 152 4.53e-45 152
MS.gene60797.t1 MTR_7g100990 50.365 137 63 2 4 138 8 141 7.86e-45 149
MS.gene60797.t1 MTR_3g096140 49.640 139 66 2 9 144 9 146 1.00e-44 148
MS.gene60797.t1 MTR_8g063550 55.469 128 52 2 9 134 8 132 1.81e-44 149
MS.gene60797.t1 MTR_3g093040 51.128 133 64 1 7 139 108 239 2.08e-44 148
MS.gene60797.t1 MTR_8g467490 50.746 134 61 2 3 134 10 140 3.12e-44 150
MS.gene60797.t1 MTR_0036s0150 52.756 127 58 2 9 134 7 132 3.19e-44 152
MS.gene60797.t1 MTR_5g040420 50.000 134 62 2 3 134 10 140 4.55e-44 149
MS.gene60797.t1 MTR_8g063550 54.615 130 54 2 9 136 8 134 7.95e-44 149
MS.gene60797.t1 MTR_1g097300 53.435 131 60 1 9 139 21 150 8.15e-44 152
MS.gene60797.t1 MTR_3g096140 49.640 139 66 2 9 144 9 146 8.89e-44 147
MS.gene60797.t1 MTR_8g063550 55.469 128 52 2 9 134 8 132 1.41e-43 149
MS.gene60797.t1 MTR_1g090723 51.181 127 60 2 9 134 10 135 6.11e-43 149
MS.gene60797.t1 MTR_1g090723 51.181 127 60 2 9 134 10 135 8.23e-43 149
MS.gene60797.t1 MTR_1g090723 51.181 127 60 2 9 134 10 135 8.29e-43 149
MS.gene60797.t1 MTR_8g093580 53.125 128 55 2 9 134 8 132 1.29e-42 147
MS.gene60797.t1 MTR_3g093050 53.906 128 58 1 7 134 22 148 1.38e-42 149
MS.gene60797.t1 MTR_3g093050 52.632 133 62 1 7 139 22 153 1.81e-42 149
MS.gene60797.t1 MTR_4g134460 50.000 130 61 2 6 134 53 179 8.34e-42 144
MS.gene60797.t1 MTR_2g086880 49.612 129 63 1 5 133 16 142 1.31e-41 146
MS.gene60797.t1 MTR_2g086880 49.612 129 63 1 5 133 16 142 2.00e-41 144
MS.gene60797.t1 MTR_4g075980 51.095 137 61 2 1 134 9 142 3.70e-41 139
MS.gene60797.t1 MTR_4g052620 46.753 154 75 4 3 149 1 154 6.38e-41 138
MS.gene60797.t1 MTR_2g068880 49.640 139 63 3 1 134 15 151 8.36e-41 139
MS.gene60797.t1 MTR_8g099750 50.769 130 57 2 7 134 14 138 2.31e-40 135
MS.gene60797.t1 MTR_2g068920 48.551 138 65 2 1 134 15 150 2.49e-40 137
MS.gene60797.t1 MTR_5g090970 47.015 134 65 2 4 134 15 145 9.79e-39 133
MS.gene60797.t1 MTR_3g070040 47.482 139 59 2 11 141 12 144 1.86e-38 133
MS.gene60797.t1 MTR_3g098810 46.212 132 62 2 7 134 14 140 3.30e-37 125
MS.gene60797.t1 MTR_5g090970 47.015 134 64 3 4 134 15 144 3.51e-37 129
MS.gene60797.t1 MTR_2g086690 46.000 150 67 6 8 146 5 151 1.25e-36 126
MS.gene60797.t1 MTR_3g098810 46.269 134 63 2 5 134 12 140 2.12e-36 125
MS.gene60797.t1 MTR_3g096140 46.400 125 63 2 23 144 2 125 5.19e-35 124
MS.gene60797.t1 MTR_8g023840 47.015 134 66 4 7 137 11 142 6.41e-34 122
MS.gene60797.t1 MTR_4g094302 43.846 130 60 3 7 134 11 129 2.54e-33 115
MS.gene60797.t1 MTR_4g094302 43.846 130 60 3 7 134 11 129 9.70e-33 115
MS.gene60797.t1 MTR_8g023860 45.588 136 69 4 7 139 12 145 5.21e-31 115
MS.gene60797.t1 MTR_7g105170 43.182 132 71 3 7 134 4 135 2.73e-30 110
MS.gene60797.t1 MTR_8g023900 41.045 134 74 4 3 133 8 139 1.91e-28 109
MS.gene60797.t1 MTR_8g023900 42.759 145 73 5 3 139 184 326 9.51e-28 107
MS.gene60797.t1 MTR_8g023930 43.846 130 68 4 7 133 24 151 2.30e-28 108
MS.gene60797.t1 MTR_8g094580 59.722 72 28 1 63 134 6 76 4.93e-26 99.0
MS.gene60797.t1 MTR_8g023880 38.667 150 71 6 1 133 1 146 3.90e-25 97.4
MS.gene60797.t1 MTR_7g070140 50.000 84 40 2 61 142 15 98 4.70e-24 91.3
MS.gene60797.t1 MTR_8g093790 37.857 140 66 6 1 138 2 122 5.23e-18 77.0
MS.gene60797.t1 MTR_7g083330 30.469 128 84 4 7 133 18 141 3.65e-15 69.7
MS.gene60797.t1 MTR_3g096400 29.231 130 81 4 7 134 7 127 2.80e-14 67.4
MS.gene60797.t1 MTR_7g083360 28.289 152 101 5 2 149 5 152 2.87e-14 66.2
MS.gene60797.t1 MTR_7g083370 27.068 133 92 4 2 133 5 133 9.33e-13 62.0
MS.gene60797.t1 MTR_7g070150 52.830 53 23 2 100 151 1 52 6.11e-12 58.5
MS.gene60797.t1 MTR_1g087190 53.333 45 20 1 9 52 7 51 7.44e-11 54.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60797.t1 AT1G71930 81.208 149 28 0 3 151 5 153 8.40e-90 265
MS.gene60797.t1 AT1G71930 81.208 149 28 0 3 151 5 153 8.40e-90 265
MS.gene60797.t1 AT2G18060 76.000 150 35 1 3 151 4 153 5.08e-85 254
MS.gene60797.t1 AT2G18060 76.000 150 35 1 3 151 4 153 5.08e-85 254
MS.gene60797.t1 AT4G36160 72.848 151 41 0 1 151 4 154 3.16e-83 249
MS.gene60797.t1 AT4G36160 72.848 151 41 0 1 151 4 154 3.16e-83 249
MS.gene60797.t1 AT4G36160 72.848 151 41 0 1 151 8 158 3.43e-83 249
MS.gene60797.t1 AT5G66300 69.536 151 45 1 2 151 7 157 2.29e-78 234
MS.gene60797.t1 AT1G12260 68.874 151 47 0 1 151 1 151 9.75e-78 234
MS.gene60797.t1 AT1G12260 68.874 151 47 0 1 151 1 151 2.43e-77 235
MS.gene60797.t1 AT1G62700 70.199 151 45 0 1 151 1 151 5.76e-77 234
MS.gene60797.t1 AT1G62700 70.199 151 45 0 1 151 1 151 5.76e-77 234
MS.gene60797.t1 AT2G46770 77.863 131 29 0 4 134 13 143 5.71e-74 225
MS.gene60797.t1 AT5G62380 67.550 151 47 1 3 151 1 151 1.02e-72 222
MS.gene60797.t1 AT5G62380 67.550 151 47 1 3 151 1 151 1.02e-72 222
MS.gene60797.t1 AT1G32770 77.099 131 30 0 4 134 13 143 1.15e-71 219
MS.gene60797.t1 AT1G33280 71.324 136 39 0 7 142 8 143 6.07e-70 213
MS.gene60797.t1 AT3G61910 71.852 135 38 0 4 138 8 142 7.94e-70 214
MS.gene60797.t1 AT4G10350 69.784 139 40 1 7 145 9 145 1.22e-68 211
MS.gene60797.t1 AT1G79580 69.853 136 40 1 6 140 16 151 2.93e-66 206
MS.gene60797.t1 AT1G79580 69.853 136 40 1 6 140 16 151 2.93e-66 206
MS.gene60797.t1 AT1G79580 69.853 136 40 1 6 140 16 151 2.93e-66 206
MS.gene60797.t1 AT1G79580 69.853 136 40 1 6 140 16 151 2.93e-66 206
MS.gene60797.t1 AT1G79580 69.853 136 40 1 6 140 16 151 2.93e-66 206
MS.gene60797.t1 AT3G17730 60.432 139 54 1 7 145 6 143 4.96e-59 184
MS.gene60797.t1 AT3G03200 61.029 136 52 1 7 142 6 140 3.43e-56 183
MS.gene60797.t1 AT5G46590 61.069 131 49 2 5 134 4 133 2.63e-55 175
MS.gene60797.t1 AT5G46590 61.069 131 49 2 5 134 4 133 4.11e-55 175
MS.gene60797.t1 AT1G65910 60.902 133 51 1 7 139 6 137 6.47e-55 182
MS.gene60797.t1 AT3G18400 54.745 137 59 1 3 139 1 134 2.06e-54 174
MS.gene60797.t1 AT5G17260 58.394 137 56 1 6 142 5 140 2.10e-54 178
MS.gene60797.t1 AT4G17980 59.848 132 50 2 5 134 4 134 9.14e-54 171
MS.gene60797.t1 AT4G17980 59.848 132 50 2 5 134 4 134 2.88e-53 170
MS.gene60797.t1 AT1G54330 62.500 128 47 1 7 134 6 132 4.08e-53 170
MS.gene60797.t1 AT5G07680 53.846 143 61 2 7 147 3 142 5.77e-52 167
MS.gene60797.t1 AT5G07680 52.703 148 65 2 2 147 12 156 5.97e-52 168
MS.gene60797.t1 AT5G39610 59.375 128 49 1 7 134 20 144 2.37e-51 165
MS.gene60797.t1 AT3G29035 59.375 128 49 1 7 134 24 148 5.40e-51 165
MS.gene60797.t1 AT3G15170 56.391 133 53 2 4 134 17 146 6.78e-51 165
MS.gene60797.t1 AT1G69490 54.074 135 59 1 4 138 6 137 1.09e-50 163
MS.gene60797.t1 AT1G56010 55.634 142 57 3 3 142 15 152 1.18e-50 164
MS.gene60797.t1 AT5G61430 53.147 143 62 2 7 147 16 155 2.31e-50 164
MS.gene60797.t1 AT2G24430 55.639 133 54 2 4 134 13 142 2.43e-50 164
MS.gene60797.t1 AT2G24430 55.639 133 54 2 4 134 13 142 2.43e-50 164
MS.gene60797.t1 AT3G12977 55.970 134 56 1 3 136 14 144 3.68e-50 162
MS.gene60797.t1 AT5G53950 58.462 130 49 2 7 134 17 143 1.16e-49 163
MS.gene60797.t1 AT3G04070 52.174 138 58 2 2 134 5 139 2.92e-49 161
MS.gene60797.t1 AT3G04070 52.174 138 58 2 2 134 5 139 4.54e-49 161
MS.gene60797.t1 AT1G76420 57.895 133 51 2 4 134 19 148 9.01e-49 160
MS.gene60797.t1 AT4G27410 51.449 138 62 2 6 141 13 147 1.38e-48 158
MS.gene60797.t1 AT5G63790 54.478 134 57 2 1 134 44 173 3.57e-48 158
MS.gene60797.t1 AT5G63790 54.478 134 57 2 1 134 54 183 3.72e-48 158
MS.gene60797.t1 AT1G61110 53.488 129 56 2 7 134 16 141 5.10e-48 158
MS.gene60797.t1 AT3G10490 51.408 142 65 2 3 141 23 163 1.04e-47 154
MS.gene60797.t1 AT3G10480 56.154 130 56 1 5 134 25 153 1.13e-47 160
MS.gene60797.t1 AT3G10480 56.154 130 56 1 5 134 25 153 1.19e-47 160
MS.gene60797.t1 AT5G18270 55.039 129 54 2 7 134 21 146 1.54e-47 157
MS.gene60797.t1 AT5G08790 54.478 134 57 2 1 134 1 130 1.83e-47 155
MS.gene60797.t1 AT2G33480 51.493 134 59 1 7 140 15 142 1.85e-47 155
MS.gene60797.t1 AT2G33480 51.493 134 59 1 7 140 15 142 2.13e-47 154
MS.gene60797.t1 AT5G18270 54.264 129 55 2 7 134 21 146 2.85e-47 156
MS.gene60797.t1 AT5G04410 54.615 130 58 1 5 134 7 135 3.03e-47 161
MS.gene60797.t1 AT1G77450 55.906 127 52 2 8 134 11 133 3.45e-47 154
MS.gene60797.t1 AT3G04060 51.389 144 64 3 7 147 20 160 4.50e-47 155
MS.gene60797.t1 AT1G32510 51.825 137 58 2 5 134 4 139 6.82e-47 154
MS.gene60797.t1 AT3G10500 53.846 130 59 1 5 134 7 135 1.50e-46 159
MS.gene60797.t1 AT3G15500 51.938 129 59 1 6 134 13 138 3.20e-46 153
MS.gene60797.t1 AT3G10490 52.143 140 63 2 5 141 25 163 4.01e-46 156
MS.gene60797.t1 AT1G01720 53.906 128 55 2 7 134 7 130 4.25e-46 152
MS.gene60797.t1 AT1G33060 52.381 147 65 3 1 144 19 163 4.73e-46 159
MS.gene60797.t1 AT1G33060 52.381 147 65 3 1 144 19 163 5.10e-46 159
MS.gene60797.t1 AT2G27300 49.286 140 65 2 5 144 12 145 5.34e-46 153
MS.gene60797.t1 AT1G52890 51.163 129 60 1 6 134 13 138 9.27e-46 152
MS.gene60797.t1 AT4G35580 54.478 134 59 2 1 134 4 135 1.48e-45 155
MS.gene60797.t1 AT4G35580 54.478 134 59 2 1 134 4 135 2.19e-45 155
MS.gene60797.t1 AT4G35580 54.478 134 59 2 1 134 4 135 2.21e-45 155
MS.gene60797.t1 AT4G27410 48.344 151 62 4 7 141 14 164 6.37e-45 149
MS.gene60797.t1 AT4G28530 51.316 152 51 4 2 134 5 152 1.04e-44 150
MS.gene60797.t1 AT3G15510 53.968 126 53 2 11 134 21 143 1.73e-44 150
MS.gene60797.t1 AT1G26870 50.746 134 61 2 3 134 12 142 1.80e-44 151
MS.gene60797.t1 AT5G13180 53.077 130 53 2 7 134 14 137 3.44e-44 146
MS.gene60797.t1 AT5G24590 55.072 138 56 3 2 134 4 140 3.61e-44 150
MS.gene60797.t1 AT5G39820 51.128 133 60 2 4 134 17 146 5.00e-44 148
MS.gene60797.t1 AT1G34180 49.624 133 66 1 9 141 18 149 6.97e-44 152
MS.gene60797.t1 AT1G34180 49.624 133 66 1 9 141 18 149 1.86e-43 149
MS.gene60797.t1 AT1G34190 49.630 135 63 2 9 141 18 149 2.43e-43 150
MS.gene60797.t1 AT1G34180 47.619 147 60 3 9 141 18 161 4.81e-43 150
MS.gene60797.t1 AT3G10480 44.444 162 58 1 5 134 25 186 6.32e-43 149
MS.gene60797.t1 AT4G10350 70.213 94 26 1 52 145 7 98 6.44e-43 144
MS.gene60797.t1 AT5G22290 48.837 129 64 1 5 133 19 145 6.75e-43 145
MS.gene60797.t1 AT3G49530 51.852 135 62 3 1 134 8 140 1.35e-42 145
MS.gene60797.t1 AT2G43000 51.587 126 58 1 9 134 20 142 1.43e-42 142
MS.gene60797.t1 AT3G44290 48.000 125 63 1 9 133 16 138 1.45e-42 141
MS.gene60797.t1 AT3G49530 51.852 135 62 3 1 134 8 140 2.50e-42 146
MS.gene60797.t1 AT1G34180 47.619 147 60 3 9 141 18 161 2.96e-42 146
MS.gene60797.t1 AT2G02450 47.482 139 66 3 6 140 50 185 6.23e-42 143
MS.gene60797.t1 AT2G02450 47.482 139 66 3 6 140 50 185 9.52e-42 144
MS.gene60797.t1 AT3G44290 48.000 125 63 1 9 133 16 138 2.45e-41 141
MS.gene60797.t1 AT5G64060 49.219 128 64 1 7 134 6 132 5.60e-41 140
MS.gene60797.t1 AT1G52880 52.344 128 54 2 11 134 21 145 1.43e-40 138
MS.gene60797.t1 AT5G04395 44.444 153 72 3 4 143 25 177 3.64e-40 134
MS.gene60797.t1 AT5G09330 50.000 126 62 1 9 134 8 132 7.79e-40 140
MS.gene60797.t1 AT5G09330 50.000 126 62 1 9 134 8 132 7.79e-40 140
MS.gene60797.t1 AT5G09330 50.000 126 62 1 9 134 8 132 7.79e-40 140
MS.gene60797.t1 AT5G09330 50.000 126 62 1 9 134 8 132 7.79e-40 140
MS.gene60797.t1 AT5G09330 50.000 126 62 1 9 134 8 132 7.79e-40 140
MS.gene60797.t1 AT2G17040 46.512 129 63 2 9 134 8 133 4.43e-39 133
MS.gene60797.t1 AT3G12910 46.622 148 68 5 2 143 16 158 8.38e-38 131
MS.gene60797.t1 AT1G32870 48.855 131 64 2 9 139 12 139 1.04e-36 132
MS.gene60797.t1 AT1G32870 48.855 131 64 2 9 139 12 139 1.12e-36 132
MS.gene60797.t1 AT1G32870 48.855 131 64 2 9 139 48 175 1.40e-36 132
MS.gene60797.t1 AT1G56010 65.385 78 27 0 65 142 8 85 5.36e-35 122
MS.gene60797.t1 AT3G12977 68.056 72 23 0 65 136 20 91 5.86e-33 116
MS.gene60797.t1 AT5G61430 57.471 87 35 1 63 147 6 92 2.85e-31 113
MS.gene60797.t1 AT5G22380 43.478 138 68 4 3 133 1 135 1.59e-29 108
MS.gene60797.t1 AT3G44350 41.221 131 68 4 10 134 8 135 1.05e-28 103
MS.gene60797.t1 AT4G28530 48.276 116 39 3 2 100 5 116 3.19e-28 106
MS.gene60797.t1 AT3G44350 41.221 131 68 4 10 134 8 135 3.54e-28 104
MS.gene60797.t1 AT2G33480 53.846 78 36 0 63 140 8 85 9.04e-28 102
MS.gene60797.t1 AT2G18060 70.312 64 19 0 88 151 2 65 1.94e-27 103
MS.gene60797.t1 AT5G64530 39.535 129 61 5 7 133 3 116 4.23e-25 94.7
MS.gene60797.t1 AT5G64530 39.535 129 61 5 7 133 3 116 1.49e-24 94.0
MS.gene60797.t1 AT1G02230 44.526 137 64 8 8 138 4 134 5.78e-24 95.9
MS.gene60797.t1 AT4G01520 38.346 133 72 5 8 133 5 134 2.11e-23 93.6
MS.gene60797.t1 AT3G04420 39.695 131 70 4 8 133 4 130 1.76e-22 90.9
MS.gene60797.t1 AT3G04420 39.695 131 70 4 8 133 4 130 2.09e-22 91.3
MS.gene60797.t1 AT4G01540 37.692 130 73 4 10 133 7 134 3.06e-22 91.7
MS.gene60797.t1 AT4G01540 37.692 130 73 4 10 133 7 134 3.41e-22 91.7
MS.gene60797.t1 AT4G01540 37.405 131 74 4 10 134 7 135 3.97e-22 91.3
MS.gene60797.t1 AT4G01540 37.692 130 73 4 10 133 7 134 4.04e-22 91.7
MS.gene60797.t1 AT1G02250 40.152 132 68 5 8 133 4 130 1.15e-21 89.7
MS.gene60797.t1 AT4G01550 40.310 129 70 5 10 133 7 133 1.91e-21 89.7
MS.gene60797.t1 AT1G02220 37.879 132 70 5 7 133 3 127 3.76e-19 82.8
MS.gene60797.t1 AT1G01010 36.496 137 72 6 10 135 6 138 6.67e-19 82.4
MS.gene60797.t1 AT5G50820 34.559 136 74 5 7 138 17 141 7.07e-18 76.6
MS.gene60797.t1 AT3G10490 57.692 52 22 0 83 134 2 53 9.77e-17 75.9
MS.gene60797.t1 AT3G10490 57.692 52 22 0 83 134 2 53 9.77e-17 75.9
MS.gene60797.t1 AT3G56530 29.412 136 92 2 6 139 51 184 1.20e-16 75.5
MS.gene60797.t1 AT2G43000 52.381 63 30 0 72 134 2 64 2.99e-16 72.4
MS.gene60797.t1 AT5G14000 30.233 129 83 2 7 133 15 138 5.02e-16 71.2
MS.gene60797.t1 AT5G14000 30.233 129 83 2 7 133 15 138 1.99e-15 70.5
MS.gene60797.t1 AT5G22290 60.000 45 18 0 89 133 2 46 2.62e-14 68.2
MS.gene60797.t1 AT3G55210 26.351 148 94 4 7 141 11 156 1.92e-13 66.2
MS.gene60797.t1 AT3G04430 34.815 135 71 6 13 134 6 136 7.49e-13 63.5

Find 36 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCCACTGCTGCTGGATTT+TGG 0.210425 1.2:-72133788 MS.gene60797:CDS
TAGGATATTTCTTATCTTTG+TGG 0.324009 1.2:+72133829 None:intergenic
GAGATCATCATCAATGGATA+TGG 0.360587 1.2:-72134214 None:intergenic
CTATTAGTTCTTGTTCCTGT+AGG 0.412771 1.2:+72133810 None:intergenic
TTGTAGGGTATTACCTCAAC+AGG 0.423700 1.2:-72134143 MS.gene60797:CDS
ACTAATAGAGCCACTGCTGC+TGG 0.441800 1.2:-72133795 MS.gene60797:CDS
AAGAAGGATGGGTTGTGTGC+AGG 0.445621 1.2:-72133052 MS.gene60797:CDS
CCAACAGAAGAAGAACTTGT+AGG 0.454094 1.2:-72134159 MS.gene60797:CDS
CCTACAAGTTCTTCTTCTGT+TGG 0.464154 1.2:+72134159 None:intergenic
TACAAAGGACGTGCCCCAAA+TGG 0.483527 1.2:-72133693 MS.gene60797:CDS
GTGAATTAATCTTCCTGTTG+AGG 0.483860 1.2:+72134130 None:intergenic
TATTAATTACTGCAGGAAGA+AGG 0.489259 1.2:-72133068 MS.gene60797:intron
CAAATGGAAGGAAAACTGAT+TGG 0.489271 1.2:-72133677 MS.gene60797:CDS
AGAAGGATGGGTTGTGTGCA+GGG 0.492807 1.2:-72133051 MS.gene60797:CDS
ATGGAATCATGTGTACCTCC+AGG 0.502938 1.2:-72134195 MS.gene60797:CDS
ATTGAACCATGGGACATTCA+AGG 0.504836 1.2:-72134063 MS.gene60797:intron
AATGCAGATAGATGCAAGCT+AGG 0.521793 1.2:-72133885 MS.gene60797:intron
CAACAGAAGAAGAACTTGTA+GGG 0.533130 1.2:-72134158 MS.gene60797:CDS
AATTACTGCAGGAAGAAGGA+TGG 0.543175 1.2:-72133064 MS.gene60797:intron
AAAGATAAGAAATATCCTAC+AGG 0.562663 1.2:-72133825 MS.gene60797:CDS
ATTACTGCAGGAAGAAGGAT+GGG 0.564101 1.2:-72133063 MS.gene60797:intron
CTAAAATAACTTGCCTGTGG+AGG 0.564331 1.2:+72133615 None:intergenic
TTCTGAACATGGTCCTCCAC+AGG 0.565416 1.2:-72133628 MS.gene60797:CDS
AAAACAGAATAATAGGAATG+AGG 0.568492 1.2:-72133731 MS.gene60797:CDS
ATCTCTACAAAATTGAACCA+TGG 0.574175 1.2:-72134074 MS.gene60797:CDS
TCTCTACAAAATTGAACCAT+GGG 0.577975 1.2:-72134073 MS.gene60797:CDS
TGATCTAGATGTTATTGTTG+AGG 0.597687 1.2:-72134100 MS.gene60797:CDS
AAGGACGTGCCCCAAATGGA+AGG 0.600104 1.2:-72133689 MS.gene60797:CDS
TTTCCAAAATCCAGCAGCAG+TGG 0.602768 1.2:+72133785 None:intergenic
GTTGGATGAAATCTAAACCC+TGG 0.604289 1.2:+72134177 None:intergenic
AATGTACCTTGAATGTCCCA+TGG 0.604436 1.2:+72134057 None:intergenic
TGGAATCATGTGTACCTCCA+GGG 0.620854 1.2:-72134194 MS.gene60797:CDS
GATATGAGCAACAGAATGAG+TGG 0.640331 1.2:-72133863 MS.gene60797:CDS
ATGCTAAAATAACTTGCCTG+TGG 0.642241 1.2:+72133612 None:intergenic
AGACATCAAACTTCTGAACA+TGG 0.653088 1.2:-72133639 MS.gene60797:CDS
GGATGAAATCTAAACCCTGG+AGG 0.694839 1.2:+72134180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATTAGAATAGAA+AGG + chr1.2:72133741-72133760 None:intergenic 10.0%
!!! TTTATTTTATCTTTTGTTAT+AGG - chr1.2:72134024-72134043 MS.gene60797:intron 10.0%
!! TTGAGATAATAATATAATTG+AGG + chr1.2:72134109-72134128 None:intergenic 15.0%
!! TATTTACTATTTACAGTCAA+AGG + chr1.2:72134148-72134167 None:intergenic 20.0%
!! TTGAAATTATTAATTACTGC+AGG - chr1.2:72134170-72134189 MS.gene60797:CDS 20.0%
!!! TAATATAATTGAGGTTTGTT+TGG + chr1.2:72134100-72134119 None:intergenic 20.0%
!!! TCATAATCAAAATTTGACTT+TGG - chr1.2:72133245-72133264 MS.gene60797:intron 20.0%
! AAAACAGAATAATAGGAATG+AGG - chr1.2:72133514-72133533 MS.gene60797:intron 25.0%
! AAAGATAAGAAATATCCTAC+AGG - chr1.2:72133420-72133439 MS.gene60797:intron 25.0%
! ACTTCCAAAAACAGAATAAT+AGG - chr1.2:72133507-72133526 MS.gene60797:intron 25.0%
! TAGGATATTTCTTATCTTTG+TGG + chr1.2:72133419-72133438 None:intergenic 25.0%
! TTATATCCTTATCAACCTTA+TGG - chr1.2:72133273-72133292 MS.gene60797:intron 25.0%
!! CATTCCTATTATTCTGTTTT+TGG + chr1.2:72133514-72133533 None:intergenic 25.0%
ATCTCTACAAAATTGAACCA+TGG - chr1.2:72133171-72133190 MS.gene60797:intron 30.0%
TACTTGTGCATGTTTGAAAA+TGG + chr1.2:72133893-72133912 None:intergenic 30.0%
TATTAATTACTGCAGGAAGA+AGG - chr1.2:72134177-72134196 MS.gene60797:CDS 30.0%
TCTCTACAAAATTGAACCAT+GGG - chr1.2:72133172-72133191 MS.gene60797:intron 30.0%
TGATCTAGATGTTATTGTTG+AGG - chr1.2:72133145-72133164 MS.gene60797:intron 30.0%
! AAGACACTTGTCTTTTACAA+AGG - chr1.2:72133537-72133556 MS.gene60797:intron 30.0%
! AATCAGTTTTCCTTCCATTT+GGG + chr1.2:72133569-72133588 None:intergenic 30.0%
AGACATCAAACTTCTGAACA+TGG - chr1.2:72133606-72133625 MS.gene60797:intron 35.0%
CAAATGGAAGGAAAACTGAT+TGG - chr1.2:72133568-72133587 MS.gene60797:intron 35.0%
CAACAGAAGAAGAACTTGTA+GGG - chr1.2:72133087-72133106 MS.gene60797:intron 35.0%
GTGAATTAATCTTCCTGTTG+AGG + chr1.2:72133118-72133137 None:intergenic 35.0%
TTGTGCATGTTTGAAAATGG+AGG + chr1.2:72133890-72133909 None:intergenic 35.0%
! ATCAGTTTTCCTTCCATTTG+GGG + chr1.2:72133568-72133587 None:intergenic 35.0%
! ATGCTAAAATAACTTGCCTG+TGG + chr1.2:72133636-72133655 None:intergenic 35.0%
! CAATCAGTTTTCCTTCCATT+TGG + chr1.2:72133570-72133589 None:intergenic 35.0%
! CTATTAGTTCTTGTTCCTGT+AGG + chr1.2:72133438-72133457 None:intergenic 35.0%
!! ATTTTGGAAAGCTACTGGAA+GGG - chr1.2:72133473-72133492 MS.gene60797:intron 35.0%
AATGCAGATAGATGCAAGCT+AGG - chr1.2:72133360-72133379 MS.gene60797:intron 40.0%
AATGTACCTTGAATGTCCCA+TGG + chr1.2:72133191-72133210 None:intergenic 40.0%
AATTACTGCAGGAAGAAGGA+TGG - chr1.2:72134181-72134200 MS.gene60797:CDS 40.0%
ACATGACATCATGCTCCATA+AGG + chr1.2:72133291-72133310 None:intergenic 40.0%
ATTACTGCAGGAAGAAGGAT+GGG - chr1.2:72134182-72134201 MS.gene60797:CDS 40.0%
ATTGAACCATGGGACATTCA+AGG - chr1.2:72133182-72133201 MS.gene60797:intron 40.0%
CCAACAGAAGAAGAACTTGT+AGG - chr1.2:72133086-72133105 MS.gene60797:intron 40.0%
CCTACAAGTTCTTCTTCTGT+TGG + chr1.2:72133089-72133108 None:intergenic 40.0%
GATATGAGCAACAGAATGAG+TGG - chr1.2:72133382-72133401 MS.gene60797:intron 40.0%
GTTGGATGAAATCTAAACCC+TGG + chr1.2:72133071-72133090 None:intergenic 40.0%
! CTAAAATAACTTGCCTGTGG+AGG + chr1.2:72133633-72133652 None:intergenic 40.0%
! TTGTAGGGTATTACCTCAAC+AGG - chr1.2:72133102-72133121 MS.gene60797:intron 40.0%
!! CATGCTCCATAAGGTTGATA+AGG + chr1.2:72133282-72133301 None:intergenic 40.0%
!! GATTTTGGAAAGCTACTGGA+AGG - chr1.2:72133472-72133491 MS.gene60797:intron 40.0%
ATGGAATCATGTGTACCTCC+AGG - chr1.2:72133050-72133069 MS.gene60797:CDS 45.0%
GGATGAAATCTAAACCCTGG+AGG + chr1.2:72133068-72133087 None:intergenic 45.0%
TGGAATCATGTGTACCTCCA+GGG - chr1.2:72133051-72133070 MS.gene60797:CDS 45.0%
TTTCCAAAATCCAGCAGCAG+TGG + chr1.2:72133463-72133482 None:intergenic 45.0%
!! GCTGGATTTTGGAAAGCTAC+TGG - chr1.2:72133468-72133487 MS.gene60797:intron 45.0%
ACTAATAGAGCCACTGCTGC+TGG - chr1.2:72133450-72133469 MS.gene60797:intron 50.0%
TACAAAGGACGTGCCCCAAA+TGG - chr1.2:72133552-72133571 MS.gene60797:intron 50.0%
TTCTGAACATGGTCCTCCAC+AGG - chr1.2:72133617-72133636 MS.gene60797:intron 50.0%
!! AAGAAGGATGGGTTGTGTGC+AGG - chr1.2:72134193-72134212 MS.gene60797:CDS 50.0%
!! AGAAGGATGGGTTGTGTGCA+GGG - chr1.2:72134194-72134213 MS.gene60797:CDS 50.0%
AAGGACGTGCCCCAAATGGA+AGG - chr1.2:72133556-72133575 MS.gene60797:intron 55.0%
! GAGCCACTGCTGCTGGATTT+TGG - chr1.2:72133457-72133476 MS.gene60797:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72133044 72134223 72133044 ID=MS.gene60797
chr1.2 mRNA 72133044 72134223 72133044 ID=MS.gene60797.t1;Parent=MS.gene60797
chr1.2 exon 72134064 72134223 72134064 ID=MS.gene60797.t1.exon1;Parent=MS.gene60797.t1
chr1.2 CDS 72134064 72134223 72134064 ID=cds.MS.gene60797.t1;Parent=MS.gene60797.t1
chr1.2 exon 72133625 72133900 72133625 ID=MS.gene60797.t1.exon2;Parent=MS.gene60797.t1
chr1.2 CDS 72133625 72133900 72133625 ID=cds.MS.gene60797.t1;Parent=MS.gene60797.t1
chr1.2 exon 72133044 72133075 72133044 ID=MS.gene60797.t1.exon3;Parent=MS.gene60797.t1
chr1.2 CDS 72133044 72133075 72133044 ID=cds.MS.gene60797.t1;Parent=MS.gene60797.t1
Gene Sequence

>MS.gene60797

ATGGATATGGAATCATGTGTACCTCCAGGGTTTAGATTTCATCCAACAGAAGAAGAACTTGTAGGGTATTACCTCAACAGGAAGATTAATTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGACATTCAAGGTACATTTAATATATATCTTGTACACACATAGTGATATAGTTCATAATCAAAATTTGACTTTGGAAATTTTATATCCTTATCAACCTTATGGAGCATGATGTCATGTCATTATATAGCATAGTTAGTTAATTACTAATGATGTGTTTGTTGAAAAAAATGCAGATAGATGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAATATCCTACAGGAACAAGAACTAATAGAGCCACTGCTGCTGGATTTTGGAAAGCTACTGGAAGGGATAAAGCTGTGACTTCCAAAAACAGAATAATAGGAATGAGGAAGACACTTGTCTTTTACAAAGGACGTGCCCCAAATGGAAGGAAAACTGATTGGATCATGCATGAATATAGACATCAAACTTCTGAACATGGTCCTCCACAGGCAAGTTATTTTAGCATTCAAATCTTCTTTCATACTTCTACTATTTAACTTTTGTTTCAAGATAATAATGAGTGTTTTAGACATTCAAGATATGATTTACCTTTCTATTCTAATTTTATTTTTAGATATTTATTATTCTTTGCATTCAATGAGAAATTGTAAAACAGTTAATAATACAAGTTAAGAATATTAGCAAAAAATTTCAAACATGTTATTAAAATAAATAGTGTTGTCAAAACTACACACTTCCTCCATTTTCAAACATGCACAAGTACTTGTGAAAAGAAAACTAATAGAAACAAAAGATTTTTTCATCTTATTTCTATAAGATATATAATATATAGCTTATGAAAATACTTTATAACTTATATAAAAATCGTTTAACTTTATTTTATCTTTTGTTATAGGAAATAACTTATACATGAGTACTTACACTAAGTTTTAATTAATTTGTTTATCCAAACAAACCTCAATTATATTATTATCTCAAGCTGCTTCTCTTTCATCCTTTGACTGTAAATAGTAAATAATTTGAAATTATTAATTACTGCAGGAAGAAGGATGGGTTGTGTGCAGGGCATTTAA
Protein sequence

>MS.gene60797.t1

MDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQARRRMGCVQGI