AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60992

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60992.t1 MTR_8g066820 99.574 235 1 0 1 235 1 235 1.39e-179 492
MS.gene60992.t1 MTR_5g030130 84.874 238 32 3 1 235 1 237 3.75e-148 412
MS.gene60992.t1 MTR_5g030130 87.952 166 18 1 1 164 1 166 7.18e-109 311
MS.gene60992.t1 MTR_5g007230 69.767 215 56 3 19 233 7 212 2.61e-107 308
MS.gene60992.t1 MTR_4g078170 72.059 204 53 4 31 233 13 213 6.65e-104 300
MS.gene60992.t1 MTR_1g062160 55.340 206 73 5 33 229 7 202 7.59e-73 220
MS.gene60992.t1 MTR_7g102790 58.333 204 71 5 33 229 7 203 2.36e-71 217
MS.gene60992.t1 MTR_2g060540 49.630 135 58 4 34 158 11 145 1.10e-38 132
MS.gene60992.t1 MTR_2g060500 48.148 135 60 3 34 158 11 145 2.13e-38 131
MS.gene60992.t1 MTR_4g116300 48.031 127 65 1 33 159 6 131 7.03e-37 130
MS.gene60992.t1 MTR_2g055210 31.818 264 130 6 9 228 82 339 3.64e-36 130
MS.gene60992.t1 MTR_2g084495 34.052 232 109 6 34 228 5 229 3.75e-36 127
MS.gene60992.t1 MTR_4g094680 33.478 230 118 7 26 228 15 236 4.82e-35 125
MS.gene60992.t1 MTR_2g084525 46.715 137 63 4 34 160 5 141 8.17e-32 117
MS.gene60992.t1 MTR_2g084510 43.066 137 68 3 34 160 4 140 1.21e-30 114
MS.gene60992.t1 MTR_2g036170 31.532 222 119 6 33 228 37 251 9.38e-28 106
MS.gene60992.t1 MTR_8g105930 33.951 162 82 6 19 159 1 158 1.62e-16 76.3
MS.gene60992.t1 MTR_8g097310 29.193 161 99 4 72 228 4 153 2.98e-15 70.9
MS.gene60992.t1 MTR_5g077740 26.866 201 105 8 33 228 23 186 7.40e-15 70.9
MS.gene60992.t1 MTR_1g032880 33.929 112 60 4 79 180 27 134 5.91e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60992.t1 AT4G17900 73.391 233 52 5 1 229 1 227 4.38e-122 346
MS.gene60992.t1 AT4G17900 72.906 203 46 4 30 229 17 213 1.09e-103 299
MS.gene60992.t1 AT1G32700 70.968 217 53 5 24 235 2 213 2.07e-103 298
MS.gene60992.t1 AT1G32700 70.391 179 44 4 61 235 1 174 5.66e-80 238
MS.gene60992.t1 AT5G46710 52.521 238 90 8 1 228 1 225 8.95e-78 234
MS.gene60992.t1 AT1G21000 50.209 239 82 4 26 228 6 243 6.62e-77 232
MS.gene60992.t1 AT1G21000 50.209 239 82 4 26 228 9 246 8.50e-77 232
MS.gene60992.t1 AT1G76590 50.877 228 80 4 33 228 18 245 2.02e-74 226
MS.gene60992.t1 AT5G46710 52.830 212 84 6 26 228 5 209 4.40e-72 219
MS.gene60992.t1 AT5G46710 59.627 161 57 3 1 159 1 155 1.38e-66 203
MS.gene60992.t1 AT1G43000 46.083 217 101 4 26 228 2 216 4.21e-62 194
MS.gene60992.t1 AT1G43000 46.083 217 101 4 26 228 9 223 4.55e-62 194
MS.gene60992.t1 AT2G27930 44.712 208 83 5 33 230 4 189 3.77e-53 170
MS.gene60992.t1 AT2G27930 44.712 208 83 5 33 230 4 189 3.77e-53 170
MS.gene60992.t1 AT2G27930 55.474 137 51 2 33 159 4 140 8.90e-49 158
MS.gene60992.t1 AT2G27930 55.474 137 51 2 33 159 4 140 8.90e-49 158
MS.gene60992.t1 AT2G12646 48.819 127 64 1 33 159 6 131 2.73e-37 131
MS.gene60992.t1 AT2G12646 48.819 127 64 1 33 159 6 131 2.73e-37 131
MS.gene60992.t1 AT2G12646 48.819 127 64 1 33 159 3 128 2.81e-37 131
MS.gene60992.t1 AT3G60670 46.212 132 70 1 28 159 2 132 9.30e-36 127
MS.gene60992.t1 AT1G31040 34.513 226 116 5 33 228 19 242 2.72e-34 123
MS.gene60992.t1 AT2G27930 45.455 154 53 4 86 230 61 192 5.39e-34 121
MS.gene60992.t1 AT2G27930 45.455 154 53 4 86 230 61 192 5.39e-34 121
MS.gene60992.t1 AT2G01818 34.579 214 115 9 35 228 13 221 4.13e-22 90.9
MS.gene60992.t1 AT2G01818 33.987 153 81 7 92 228 9 157 9.98e-11 58.9

Find 50 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAATTCCCTTTCTTCTTT+TGG 0.157849 8.1:-37683204 None:intergenic
CAAAGATCATCGTGCTATTC+AGG 0.214126 8.1:+37681660 MS.gene60992:CDS
GAGCTGACTTGTTCTTCTTC+TGG 0.262316 8.1:-37683055 None:intergenic
CCTTGCACTGTTGATAATAT+AGG 0.282719 8.1:-37682252 None:intergenic
CTTCATACCATGATGTGATT+AGG 0.304121 8.1:+37682186 MS.gene60992:CDS
TCCTTTCGATTCTGTTCTCT+TGG 0.334164 8.1:+37682362 MS.gene60992:CDS
AACTATGAATTCTAGATTGT+TGG 0.377091 8.1:+37683017 MS.gene60992:intron
TTCATACCATGATGTGATTA+GGG 0.385029 8.1:+37682187 MS.gene60992:CDS
CAGAAAGTGTTGGACATAAC+AGG 0.395592 8.1:+37682221 MS.gene60992:CDS
ACTGTTGGTGGTGGTGTTGA+AGG 0.411165 8.1:-37683167 None:intergenic
TATTGTTTGGATTGTATGAA+TGG 0.420599 8.1:+37681607 MS.gene60992:CDS
TGAGTGCAATATGTATTGTT+TGG 0.429253 8.1:+37681594 MS.gene60992:CDS
TGGAAGACTGAAGAACATTA+AGG 0.432710 8.1:+37683130 MS.gene60992:CDS
TGTGTTTGATACAGATAAGA+AGG 0.447190 8.1:+37682162 MS.gene60992:intron
GTCCTGATGATGAGGAAAAC+AGG 0.450549 8.1:+37681494 MS.gene60992:CDS
GCAGCACTAGTCCTCCCATC+GGG 0.455937 8.1:-37683235 None:intergenic
CACAGCAGCAGTTGCAGCCA+TGG 0.460151 8.1:+37683110 MS.gene60992:CDS
TAATGTTCTTCAGTCTTCCA+TGG 0.466799 8.1:-37683127 None:intergenic
CAGATCAGCCAAAAGAAGAA+AGG 0.467780 8.1:+37683196 MS.gene60992:CDS
GAATAGCACGATGATCTTTG+TGG 0.487973 8.1:-37681657 None:intergenic
GCTGATCTGTAATTGACTGT+TGG 0.490334 8.1:-37683182 None:intergenic
CCTCAGCCAAGGCCCGGAAA+AGG 0.495211 8.1:+37682296 MS.gene60992:CDS
GATGATCTTTGTGGTAATTG+AGG 0.504530 8.1:-37681648 None:intergenic
AGATCAGCCAAAAGAAGAAA+GGG 0.506864 8.1:+37683197 MS.gene60992:CDS
ATTCTGTTCTCTTGGCTGCA+AGG 0.521419 8.1:+37682370 MS.gene60992:CDS
CCTATATTATCAACAGTGCA+AGG 0.522886 8.1:+37682252 MS.gene60992:CDS
GAAAGGCCTCAGCCAAGGCC+CGG 0.523082 8.1:+37682290 MS.gene60992:CDS
GATCTGTAATTGACTGTTGG+TGG 0.533120 8.1:-37683179 None:intergenic
CTGTAATTGACTGTTGGTGG+TGG 0.534739 8.1:-37683176 None:intergenic
GGGTTGTGTTCTTGAATGAA+AGG 0.538393 8.1:+37682273 MS.gene60992:CDS
TGCAGCACTAGTCCTCCCAT+CGG 0.541315 8.1:-37683236 None:intergenic
ATTCCGCATCGTGCCCCGAT+GGG 0.553697 8.1:+37683221 MS.gene60992:CDS
AATTCCGCATCGTGCCCCGA+TGG 0.556752 8.1:+37683220 MS.gene60992:CDS
CTCGCAGACTTCACAAGTGT+TGG 0.560178 8.1:-37682324 None:intergenic
CATTCACCCTAATCACATCA+TGG 0.571167 8.1:-37682193 None:intergenic
CCGCATCGTGCCCCGATGGG+AGG 0.573029 8.1:+37683224 MS.gene60992:CDS
TTGAGCAGAGGTTTCAACCA+TGG 0.583253 8.1:-37681523 None:intergenic
AAGAAACGCTCTTTGAGCAG+AGG 0.583635 8.1:-37681535 None:intergenic
GAATGAGATTCAGAAAGTGT+TGG 0.585916 8.1:+37682211 MS.gene60992:CDS
AGGAAAACAGGTGGCCACCA+TGG 0.603560 8.1:+37681506 MS.gene60992:CDS
TGAATGAAAGGCCTCAGCCA+AGG 0.624070 8.1:+37682285 MS.gene60992:CDS
CCTCCCATCGGGGCACGATG+CGG 0.625934 8.1:-37683224 None:intergenic
GCCAAGAGAACAGAATCGAA+AGG 0.631094 8.1:-37682363 None:intergenic
AGCAGAGGTTTCAACCATGG+TGG 0.633067 8.1:-37681520 None:intergenic
AGAATCGAAAGGAATCGAGA+AGG 0.635045 8.1:-37682352 None:intergenic
TGCTGGAGGTCCTGATGATG+AGG 0.642425 8.1:+37681486 MS.gene60992:CDS
TTCAATGATATCAGACTCAG+AGG 0.648076 8.1:+37683082 MS.gene60992:CDS
CTATATTATCAACAGTGCAA+GGG 0.657853 8.1:+37682253 MS.gene60992:CDS
CTGATGATGAGGAAAACAGG+TGG 0.717367 8.1:+37681497 MS.gene60992:CDS
CAGCACTAGTCCTCCCATCG+GGG 0.730442 8.1:-37683234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTATAAAAAAATT+GGG + chr8.1:37681216-37681235 MS.gene60992:intron 0.0%
!!! AAAATTTGATTTTTTTTACA+CGG + chr8.1:37680978-37680997 MS.gene60992:intron 10.0%
!!! ATTATTATTACTACTATTTT+GGG - chr8.1:37682455-37682474 None:intergenic 10.0%
!!! TTAATTTTTTGTTTTGTTTT+TGG + chr8.1:37681070-37681089 MS.gene60992:intron 10.0%
!!! TTTGATAATTTTTTTTTGAA+GGG + chr8.1:37681463-37681482 MS.gene60992:intron 10.0%
!!! TTTTGATAATTTTTTTTTGA+AGG + chr8.1:37681462-37681481 MS.gene60992:intron 10.0%
!!! CTATTTAAAATATTGATCAA+TGG + chr8.1:37682737-37682756 MS.gene60992:intron 15.0%
!!! GATTATTATTACTACTATTT+TGG - chr8.1:37682456-37682475 None:intergenic 15.0%
!!! TAAACTAGTGTTAAATTTTT+TGG + chr8.1:37680903-37680922 MS.gene60992:intron 15.0%
!!! TAATTATTTCTAAGTTAACT+TGG + chr8.1:37681348-37681367 MS.gene60992:intron 15.0%
!!! TATTTGTGTTTTTAAATTCT+GGG + chr8.1:37681113-37681132 MS.gene60992:intron 15.0%
!!! TTATTTGTGTTTTTAAATTC+TGG + chr8.1:37681112-37681131 MS.gene60992:intron 15.0%
!!! TTGATCAATATTTTAAATAG+TGG - chr8.1:37682737-37682756 None:intergenic 15.0%
!!! TTTTAGAGAGAAAAAAAATT+AGG + chr8.1:37681385-37681404 MS.gene60992:intron 15.0%
!!! TTTTATAAAAAAATTGACAC+TGG - chr8.1:37681211-37681230 None:intergenic 15.0%
!! AAATAATAAACACACAATGA+AGG - chr8.1:37681026-37681045 None:intergenic 20.0%
!! AAATTGAATTGAATGCAAAA+GGG - chr8.1:37682923-37682942 None:intergenic 20.0%
!! AATAATTGAATTGATTGTAG+TGG - chr8.1:37681996-37682015 None:intergenic 20.0%
!! ATAATCATGAATGCTAATAT+AGG + chr8.1:37682831-37682850 MS.gene60992:intron 20.0%
!! TAAATTGAATTGAATGCAAA+AGG - chr8.1:37682924-37682943 None:intergenic 20.0%
!! TATTATAGACTATTCTTATG+AGG - chr8.1:37682642-37682661 None:intergenic 20.0%
!! TTGAAATGACAAAATTTCAA+AGG - chr8.1:37682894-37682913 None:intergenic 20.0%
!!! ATTTGTTTTGATTGCAATTT+TGG + chr8.1:37682560-37682579 MS.gene60992:intron 20.0%
!!! GAAATTTTGTCATTTCAATA+TGG + chr8.1:37682896-37682915 MS.gene60992:intron 20.0%
!!! TATTTGTGATTTTGAATTGT+GGG + chr8.1:37681428-37681447 MS.gene60992:intron 20.0%
!!! TCTTGTATTTTAGAGAATTA+CGG - chr8.1:37682676-37682695 None:intergenic 20.0%
!!! TTATTTGTGATTTTGAATTG+TGG + chr8.1:37681427-37681446 MS.gene60992:intron 20.0%
!!! TTTTGGAATGTAATGTTTTT+GGG + chr8.1:37681087-37681106 MS.gene60992:intron 20.0%
!!! TTTTTGGAATGTAATGTTTT+TGG + chr8.1:37681086-37681105 MS.gene60992:intron 20.0%
! AAAAACAGAGTTCATTAGAA+AGG - chr8.1:37682140-37682159 None:intergenic 25.0%
! AACACAATAAATGTGTCAAA+GGG - chr8.1:37681762-37681781 None:intergenic 25.0%
! AACTATGAATTCTAGATTGT+TGG + chr8.1:37683017-37683036 MS.gene60992:intron 25.0%
! AATGACAAAATTTCAAAGGT+TGG - chr8.1:37682890-37682909 None:intergenic 25.0%
! AATGGGAATTTATGGATAAT+TGG - chr8.1:37681860-37681879 None:intergenic 25.0%
! ATGACAAAATTTCAAAGGTT+GGG - chr8.1:37682889-37682908 None:intergenic 25.0%
! GAACAATAAATGGGAATTTA+TGG - chr8.1:37681868-37681887 None:intergenic 25.0%
! TAGAAATTGAAAACAGCAAA+AGG - chr8.1:37681832-37681851 None:intergenic 25.0%
! TATTGTTTGGATTGTATGAA+TGG + chr8.1:37681607-37681626 MS.gene60992:CDS 25.0%
!!! TAACTTTTGAGTTTATGCAT+TGG + chr8.1:37682980-37682999 MS.gene60992:intron 25.0%
!!! TGTTTGTGTTTTTGAATTCT+GGG + chr8.1:37680947-37680966 MS.gene60992:intron 25.0%
!!! TTGTTTGTGTTTTTGAATTC+TGG + chr8.1:37680946-37680965 MS.gene60992:intron 25.0%
AAATTTCAAAGGTTGGGTAT+AGG - chr8.1:37682883-37682902 None:intergenic 30.0%
ATCTTGTTCAAATGGTTAGA+AGG - chr8.1:37682427-37682446 None:intergenic 30.0%
CACAACTTTGATGAATTCAA+TGG - chr8.1:37681703-37681722 None:intergenic 30.0%
CTATATTATCAACAGTGCAA+GGG + chr8.1:37682253-37682272 MS.gene60992:CDS 30.0%
GAACACAATAAATGTGTCAA+AGG - chr8.1:37681763-37681782 None:intergenic 30.0%
TCTTGTTCAAATGGTTAGAA+GGG - chr8.1:37682426-37682445 None:intergenic 30.0%
TGAGTGCAATATGTATTGTT+TGG + chr8.1:37681594-37681613 MS.gene60992:CDS 30.0%
TGATTTAACGACCAAAAGTT+TGG - chr8.1:37682484-37682503 None:intergenic 30.0%
TGTGTTTGATACAGATAAGA+AGG + chr8.1:37682162-37682181 MS.gene60992:intron 30.0%
TTCATACCATGATGTGATTA+GGG + chr8.1:37682187-37682206 MS.gene60992:CDS 30.0%
! AACTTTTGGTCGTTAAATCA+AGG + chr8.1:37682484-37682503 MS.gene60992:intron 30.0%
! AGCTTTTCAATGCAATAACA+TGG + chr8.1:37682109-37682128 MS.gene60992:intron 30.0%
! ATTGGGAATGCAATGATTTT+AGG + chr8.1:37681233-37681252 MS.gene60992:intron 30.0%
! GTTTTTCTGACAACAAAAAC+AGG - chr8.1:37681785-37681804 None:intergenic 30.0%
!! AAAAACCATCACTTTTCCTT+TGG + chr8.1:37681799-37681818 MS.gene60992:intron 30.0%
!!! AATTTTTTTTTGAAGGGTGC+TGG + chr8.1:37681469-37681488 MS.gene60992:intron 30.0%
!!! TGTTTTTGGGCTTAATTTCA+CGG - chr8.1:37680773-37680792 None:intergenic 30.0%
ACCTCAATGCATTAACATTG+AGG - chr8.1:37682598-37682617 None:intergenic 35.0%
ACCTCAATGTTAATGCATTG+AGG + chr8.1:37682594-37682613 MS.gene60992:intron 35.0%
AGATCAGCCAAAAGAAGAAA+GGG + chr8.1:37683197-37683216 MS.gene60992:CDS 35.0%
CAAATCCAAAGGAAAAGTGA+TGG - chr8.1:37681807-37681826 None:intergenic 35.0%
CCTATATTATCAACAGTGCA+AGG + chr8.1:37682252-37682271 MS.gene60992:CDS 35.0%
CTTCATACCATGATGTGATT+AGG + chr8.1:37682186-37682205 MS.gene60992:CDS 35.0%
CTTGTTCAAATGGTTAGAAG+GGG - chr8.1:37682425-37682444 None:intergenic 35.0%
GATGATCTTTGTGGTAATTG+AGG - chr8.1:37681651-37681670 None:intergenic 35.0%
GGGAGTTAATCTTGTTCAAA+TGG - chr8.1:37682435-37682454 None:intergenic 35.0%
GGTGGTTACGAACAATAAAT+GGG - chr8.1:37681877-37681896 None:intergenic 35.0%
GTGAAATTAAGCCCAAAAAC+AGG + chr8.1:37680772-37680791 MS.gene60992:CDS 35.0%
TAATGTTCTTCAGTCTTCCA+TGG - chr8.1:37683130-37683149 None:intergenic 35.0%
TCAAGCTAGCACTTAAAAGT+GGG + chr8.1:37682796-37682815 MS.gene60992:intron 35.0%
TGGAAGACTGAAGAACATTA+AGG + chr8.1:37683130-37683149 MS.gene60992:CDS 35.0%
TGGTGGTTACGAACAATAAA+TGG - chr8.1:37681878-37681897 None:intergenic 35.0%
TTCAAGCTAGCACTTAAAAG+TGG + chr8.1:37682795-37682814 MS.gene60992:intron 35.0%
TTCAATGATATCAGACTCAG+AGG + chr8.1:37683082-37683101 MS.gene60992:CDS 35.0%
TTGACACCAACATCAAATGT+CGG - chr8.1:37681960-37681979 None:intergenic 35.0%
TTTAACGACCAAAAGTTTGG+TGG - chr8.1:37682481-37682500 None:intergenic 35.0%
! ATAATCCACCACCAAACTTT+TGG + chr8.1:37682470-37682489 MS.gene60992:intron 35.0%
! ATTAGTGTCATTGTTGTGTC+TGG + chr8.1:37682044-37682063 MS.gene60992:intron 35.0%
! GAATGAGATTCAGAAAGTGT+TGG + chr8.1:37682211-37682230 MS.gene60992:CDS 35.0%
! TACCATGATTCTCCTGTTTT+TGG - chr8.1:37680787-37680806 None:intergenic 35.0%
!! ACCATGATTCTCCTGTTTTT+GGG - chr8.1:37680786-37680805 None:intergenic 35.0%
!! CATCACTTTTCCTTTGGATT+TGG + chr8.1:37681805-37681824 MS.gene60992:intron 35.0%
!! CCTTGCACTGTTGATAATAT+AGG - chr8.1:37682255-37682274 None:intergenic 35.0%
AAGGGGAAGACATTATGTGA+AGG - chr8.1:37682408-37682427 None:intergenic 40.0%
AGAATCGAAAGGAATCGAGA+AGG - chr8.1:37682355-37682374 None:intergenic 40.0%
AGCAAAAGGACCAAATCCAA+AGG - chr8.1:37681818-37681837 None:intergenic 40.0%
AGGTTGGGTATAGGAACAAA+TGG - chr8.1:37682874-37682893 None:intergenic 40.0%
CAGATCAGCCAAAAGAAGAA+AGG + chr8.1:37683196-37683215 MS.gene60992:CDS 40.0%
CATTCACCCTAATCACATCA+TGG - chr8.1:37682196-37682215 None:intergenic 40.0%
GAATAGCACGATGATCTTTG+TGG - chr8.1:37681660-37681679 None:intergenic 40.0%
GATCTGTAATTGACTGTTGG+TGG - chr8.1:37683182-37683201 None:intergenic 40.0%
GCTGATCTGTAATTGACTGT+TGG - chr8.1:37683185-37683204 None:intergenic 40.0%
GGGTTGTGTTCTTGAATGAA+AGG + chr8.1:37682273-37682292 MS.gene60992:CDS 40.0%
TCCTTTCGATTCTGTTCTCT+TGG + chr8.1:37682362-37682381 MS.gene60992:CDS 40.0%
TTGATTGTAGTGGCATACAC+CGG - chr8.1:37681986-37682005 None:intergenic 40.0%
! CAAAGATCATCGTGCTATTC+AGG + chr8.1:37681660-37681679 MS.gene60992:CDS 40.0%
! CGGAATTCCCTTTCTTCTTT+TGG - chr8.1:37683207-37683226 None:intergenic 40.0%
!! CAGAAAGTGTTGGACATAAC+AGG + chr8.1:37682221-37682240 MS.gene60992:CDS 40.0%
!! TTGATGTTGGTGTCAAATGC+CGG + chr8.1:37681964-37681983 MS.gene60992:intron 40.0%
!!! TTTTTTTTGAAGGGTGCTGG+AGG + chr8.1:37681472-37681491 MS.gene60992:intron 40.0%
AAGAAACGCTCTTTGAGCAG+AGG - chr8.1:37681538-37681557 None:intergenic 45.0%
AGCTCACACACTCTCATTGT+TGG + chr8.1:37680855-37680874 MS.gene60992:intron 45.0%
ATTCTGTTCTCTTGGCTGCA+AGG + chr8.1:37682370-37682389 MS.gene60992:CDS 45.0%
CAATCTAAACCATCGATGCG+TGG - chr8.1:37681898-37681917 None:intergenic 45.0%
CAGACACCGACATTTGATGT+TGG + chr8.1:37681951-37681970 MS.gene60992:intron 45.0%
GCCAAGAGAACAGAATCGAA+AGG - chr8.1:37682366-37682385 None:intergenic 45.0%
GCCCAAAAACAGGAGAATCA+TGG + chr8.1:37680782-37680801 MS.gene60992:CDS 45.0%
TGTCTGACACCAACATGTGT+CGG - chr8.1:37681937-37681956 None:intergenic 45.0%
TTGAGCAGAGGTTTCAACCA+TGG - chr8.1:37681526-37681545 None:intergenic 45.0%
! AACGACCAAAAGTTTGGTGG+TGG - chr8.1:37682478-37682497 None:intergenic 45.0%
! CACCTGTTTTCCTCATCATC+AGG - chr8.1:37681499-37681518 None:intergenic 45.0%
! CTGATGATGAGGAAAACAGG+TGG + chr8.1:37681497-37681516 MS.gene60992:CDS 45.0%
! CTGTAATTGACTGTTGGTGG+TGG - chr8.1:37683179-37683198 None:intergenic 45.0%
! GTCCTGATGATGAGGAAAAC+AGG + chr8.1:37681494-37681513 MS.gene60992:CDS 45.0%
!! GAGCTGACTTGTTCTTCTTC+TGG - chr8.1:37683058-37683077 None:intergenic 45.0%
!!! AGTGTTGGTGACACCTTTTC+CGG - chr8.1:37682312-37682331 None:intergenic 45.0%
!!! CAATTTTTTTATAAAAAAAT+TGG + chr8.1:37681215-37681234 MS.gene60992:intron 5.0%
AGCAGAGGTTTCAACCATGG+TGG - chr8.1:37681523-37681542 None:intergenic 50.0%
CTCGCAGACTTCACAAGTGT+TGG - chr8.1:37682327-37682346 None:intergenic 50.0%
GTTCACTGTCCGACACATGT+TGG + chr8.1:37681925-37681944 MS.gene60992:intron 50.0%
TCTAAACCATCGATGCGTGG+TGG - chr8.1:37681895-37681914 None:intergenic 50.0%
TGAATGAAAGGCCTCAGCCA+AGG + chr8.1:37682285-37682304 MS.gene60992:CDS 50.0%
!! ACTGTTGGTGGTGGTGTTGA+AGG - chr8.1:37683170-37683189 None:intergenic 50.0%
!!! GTGTTGGTGACACCTTTTCC+GGG - chr8.1:37682311-37682330 None:intergenic 50.0%
AGGAAAACAGGTGGCCACCA+TGG + chr8.1:37681506-37681525 MS.gene60992:CDS 55.0%
TCGTAACCACCACGCATCGA+TGG + chr8.1:37681886-37681905 MS.gene60992:intron 55.0%
TGCAGCACTAGTCCTCCCAT+CGG - chr8.1:37683239-37683258 None:intergenic 55.0%
! TGCTGGAGGTCCTGATGATG+AGG + chr8.1:37681486-37681505 MS.gene60992:CDS 55.0%
AATTCCGCATCGTGCCCCGA+TGG + chr8.1:37683220-37683239 MS.gene60992:CDS 60.0%
ATTCCGCATCGTGCCCCGAT+GGG + chr8.1:37683221-37683240 MS.gene60992:CDS 60.0%
CACAGCAGCAGTTGCAGCCA+TGG + chr8.1:37683110-37683129 MS.gene60992:CDS 60.0%
CAGCACTAGTCCTCCCATCG+GGG - chr8.1:37683237-37683256 None:intergenic 60.0%
GCAGCACTAGTCCTCCCATC+GGG - chr8.1:37683238-37683257 None:intergenic 60.0%
! GTGACACCTTTTCCGGGCCT+TGG - chr8.1:37682305-37682324 None:intergenic 60.0%
CCTCAGCCAAGGCCCGGAAA+AGG + chr8.1:37682296-37682315 MS.gene60992:CDS 65.0%
GAAAGGCCTCAGCCAAGGCC+CGG + chr8.1:37682290-37682309 MS.gene60992:CDS 65.0%
! CCTTTTCCGGGCCTTGGCTG+AGG - chr8.1:37682299-37682318 None:intergenic 65.0%
CCTCCCATCGGGGCACGATG+CGG - chr8.1:37683227-37683246 None:intergenic 70.0%
CCGCATCGTGCCCCGATGGG+AGG + chr8.1:37683224-37683243 MS.gene60992:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 37680744 37683265 37680744 ID=MS.gene60992
chr8.1 mRNA 37680744 37683265 37680744 ID=MS.gene60992.t1;Parent=MS.gene60992
chr8.1 exon 37680744 37680803 37680744 ID=MS.gene60992.t1.exon1;Parent=MS.gene60992.t1
chr8.1 CDS 37680744 37680803 37680744 ID=cds.MS.gene60992.t1;Parent=MS.gene60992.t1
chr8.1 exon 37681484 37681681 37681484 ID=MS.gene60992.t1.exon2;Parent=MS.gene60992.t1
chr8.1 CDS 37681484 37681681 37681484 ID=cds.MS.gene60992.t1;Parent=MS.gene60992.t1
chr8.1 exon 37682176 37682391 37682176 ID=MS.gene60992.t1.exon3;Parent=MS.gene60992.t1
chr8.1 CDS 37682176 37682391 37682176 ID=cds.MS.gene60992.t1;Parent=MS.gene60992.t1
chr8.1 exon 37683032 37683265 37683032 ID=MS.gene60992.t1.exon4;Parent=MS.gene60992.t1
chr8.1 CDS 37683032 37683265 37683032 ID=cds.MS.gene60992.t1;Parent=MS.gene60992.t1
Gene Sequence

>MS.gene60992

ATGGCGTTTGAAAATCAAGACACTGTCCGTGAAATTAAGCCCAAAAACAGGAGAATCATGGTAAATCAAAACACTTTCTTCAATTTTTTAGTAAATGTTTTGTTTTCATTTAGCTCACACACTCTCATTGTTGGTTCATTATTTGTGAATTGATTTTGATAAACTAGTGTTAAATTTTTTGGAAATGCAATGATTTTGTGTATTGTTTGTGTTTTTGAATTCTGGGTCTGATTCAAAATTTGATTTTTTTTACACGGTTTTATTTTTATTTAGTTCAGTCCTTCATTGTGTGTTTATTATTTGTGATTTGACTTGAAGAATTAGTGTTAATTTTTTGTTTTGTTTTTGGAATGTAATGTTTTTGGGTTTTATTTGTGTTTTTAAATTCTGGGTCTGATTCAAAATTTGATTTTTTCTTTTTTTACATATTTTATTTAGTGTAGATTCTCATTGTGTGTTCATTACCAGTGTCAATTTTTTTATAAAAAAATTGGGAATGCAATGATTTTAGGTATTATTTGTGTTTTTGAATAATGAGTCTGATTCAAATTGTAATTTTTTTACACAGTTTTATTTTTATTTAGCTCAAACTCTCATTGTGTGTTAATTATTTCTAAGTTAACTTGGAAAACTAGTGTTAATTTTAGAGAGAAAAAAAATTAGGAATGTGATGATTTTGTGTATTATTTGTGATTTTGAATTGTGGGTCTGATTCAAATTTTGATAATTTTTTTTTGAAGGGTGCTGGAGGTCCTGATGATGAGGAAAACAGGTGGCCACCATGGTTGAAACCTCTGCTCAAAGAGCGTTTCTTTGTTCAATGCAAGTTGCATGCTGATTCACACAAGAGTGAGTGCAATATGTATTGTTTGGATTGTATGAATGGTGCTCTTTGCTCACTCTGCCTCAATTACCACAAAGATCATCGTGCTATTCAGGTTTGTTAGTTGTTACAACCATTGAATTCATCAAAGTTGTGTGATTTCAACTGTTGTTTGTAGTTGTTGTTCTTTTACCCTTTGACACATTTATTGTGTTCCTGTTTTTGTTGTCAGAAAAACCATCACTTTTCCTTTGGATTTGGTCCTTTTGCTGTTTTCAATTTCTACACAACCAATTATCCATAAATTCCCATTTATTGTTCGTAACCACCACGCATCGATGGTTTAGATTGAATGTGTGTTCACTGTCCGACACATGTTGGTGTCAGACACCGACATTTGATGTTGGTGTCAAATGCCGGTGTATGCCACTACAATCAATTCAATTATTTTTTTAAAATTATTATTGATTACAATGAATTAGTGTCATTGTTGTGTCTGGTGTCTGTGTCTAGTTCAGTGTCGCAGAAGTGAAAAATGTTTTAGCTTTTCAATGCAATAACATGGTTATTCCTTTCTAATGAACTCTGTTTTTTGTGTGTTTGATACAGATAAGAAGGTCTTCATACCATGATGTGATTAGGGTGAATGAGATTCAGAAAGTGTTGGACATAACAGGTGTTCAAACCTATATTATCAACAGTGCAAGGGTTGTGTTCTTGAATGAAAGGCCTCAGCCAAGGCCCGGAAAAGGTGTCACCAACACTTGTGAAGTCTGCGAGCGTAGCCTTCTCGATTCCTTTCGATTCTGTTCTCTTGGCTGCAAGGTATTTTTACATTCCTTCACATAATGTCTTCCCCTTCTAACCATTTGAACAAGATTAACTCCCAAAATAGTAGTAATAATAATCCACCACCAAACTTTTGGTCGTTAAATCAAGGATTTTGATGTTTCAATTTGTTAATGATAATATGATTGAAGTTGCATTGATCACATTTGTTTTGATTGCAATTTTGGATATTATCAAGACCTCAATGTTAATGCATTGAGGTCACATCAACTACATTATTAGTCCTCATAAGAATAGTCTATAATAGTTGCATTTGACCGTAATTCTCTAAAATACAAGACTCAACATCATTATTATTATTTTTATTTTTTTATCAATCCACTATTTAAAATATTGATCAATGGTATCTCTTTTTTAAGAAAAAACTATTTGCTTTATTTTCAAGCTAGCACTTAAAAGTGGGTTGACTTTGCTTATAATCATGAATGCTAATATAGGTTTATTTTTAACTTTTTCCATTTGTTCCTATACCCAACCTTTGAAATTTTGTCATTTCAATATGGACCCTTTTGCATTCAATTCAATTTAATTTTATTGACTTGTCAAGATAATTTATTCTTGTTTTAACTTTTGAGTTTATGCATTGGATACTAATCTATGCAACTATGAATTCTAGATTGTTGGAACTTCAATAAATTTCCAGAAGAAGAACAAGTCAGCTCGTGCTTCAATGATATCAGACTCAGAGGATTCACACAGCAGCAGTTGCAGCCATGGAAGACTGAAGAACATTAAGGTGCAAAGTTTCACTCCTTCAACACCACCACCAACAGTCAATTACAGATCAGCCAAAAGAAGAAAGGGAATTCCGCATCGTGCCCCGATGGGAGGACTAGTGCTGCAATACTAA
Protein sequence

>MS.gene60992.t1

MAFENQDTVREIKPKNRRIMGAGGPDDEENRWPPWLKPLLKERFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLNYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSINFQKKNKSARASMISDSEDSHSSSCSHGRLKNIKVQSFTPSTPPPTVNYRSAKRRKGIPHRAPMGGLVLQY