Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60995.t1 | AET03267.1 | 97.2 | 213 | 6 | 0 | 22 | 234 | 100 | 312 | 3.30E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60995.t1 | Q9SK91 | 53.9 | 206 | 91 | 2 | 23 | 228 | 102 | 303 | 3.0e-53 | 209.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60995.t1 | G7LH18 | 97.2 | 213 | 6 | 0 | 22 | 234 | 100 | 312 | 2.4e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60995.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60995.t1 | MTR_8g066770 | 97.436 | 234 | 6 | 0 | 1 | 234 | 79 | 312 | 2.78e-171 | 474 |
| MS.gene60995.t1 | MTR_3g099620 | 54.825 | 228 | 84 | 3 | 16 | 230 | 96 | 317 | 3.62e-82 | 248 |
| MS.gene60995.t1 | MTR_7g113830 | 52.703 | 222 | 92 | 3 | 16 | 230 | 96 | 311 | 3.37e-73 | 225 |
| MS.gene60995.t1 | MTR_1g082480 | 53.555 | 211 | 83 | 2 | 29 | 229 | 129 | 334 | 3.57e-73 | 226 |
| MS.gene60995.t1 | MTR_5g064950 | 51.351 | 222 | 101 | 3 | 15 | 231 | 79 | 298 | 5.78e-70 | 216 |
| MS.gene60995.t1 | MTR_1g082480 | 53.804 | 184 | 70 | 2 | 29 | 202 | 129 | 307 | 8.21e-62 | 197 |
| MS.gene60995.t1 | MTR_5g064950 | 50.777 | 193 | 88 | 3 | 15 | 202 | 79 | 269 | 4.24e-59 | 189 |
| MS.gene60995.t1 | MTR_0194s0050 | 47.391 | 230 | 104 | 6 | 9 | 225 | 156 | 381 | 4.14e-57 | 186 |
| MS.gene60995.t1 | MTR_8g024210 | 50.000 | 200 | 91 | 2 | 26 | 225 | 171 | 361 | 7.56e-54 | 177 |
| MS.gene60995.t1 | MTR_2g022280 | 37.356 | 174 | 106 | 2 | 36 | 208 | 1 | 172 | 1.96e-36 | 127 |
| MS.gene60995.t1 | MTR_3g090850 | 36.548 | 197 | 84 | 3 | 34 | 189 | 99 | 295 | 1.35e-34 | 126 |
| MS.gene60995.t1 | MTR_1g028470 | 30.909 | 220 | 132 | 2 | 11 | 210 | 62 | 281 | 1.10e-28 | 110 |
| MS.gene60995.t1 | MTR_5g030430 | 26.943 | 193 | 134 | 3 | 14 | 206 | 474 | 659 | 3.23e-13 | 68.9 |
| MS.gene60995.t1 | MTR_1g112680 | 28.934 | 197 | 109 | 7 | 16 | 194 | 305 | 488 | 3.21e-12 | 65.9 |
| MS.gene60995.t1 | MTR_8g067280 | 29.319 | 191 | 126 | 4 | 16 | 206 | 447 | 628 | 7.90e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60995.t1 | AT1G72210 | 57.143 | 210 | 81 | 3 | 25 | 230 | 114 | 318 | 8.86e-72 | 222 |
| MS.gene60995.t1 | AT1G22490 | 54.146 | 205 | 90 | 2 | 25 | 229 | 104 | 304 | 1.20e-70 | 218 |
| MS.gene60995.t1 | AT5G46690 | 55.702 | 228 | 79 | 4 | 23 | 228 | 75 | 302 | 2.48e-65 | 206 |
| MS.gene60995.t1 | AT1G72210 | 57.143 | 182 | 69 | 3 | 25 | 202 | 114 | 290 | 3.16e-60 | 192 |
| MS.gene60995.t1 | AT1G22490 | 53.933 | 178 | 78 | 2 | 25 | 202 | 104 | 277 | 5.34e-59 | 189 |
| MS.gene60995.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 7.22e-54 | 178 |
| MS.gene60995.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 7.34e-54 | 178 |
| MS.gene60995.t1 | AT5G46690 | 53.960 | 202 | 71 | 4 | 23 | 202 | 75 | 276 | 1.51e-52 | 172 |
| MS.gene60995.t1 | AT4G01460 | 44.608 | 204 | 110 | 2 | 26 | 228 | 105 | 306 | 3.40e-49 | 164 |
| MS.gene60995.t1 | AT4G01460 | 44.608 | 204 | 110 | 2 | 26 | 228 | 105 | 306 | 3.40e-49 | 164 |
| MS.gene60995.t1 | AT5G65320 | 41.905 | 210 | 101 | 4 | 30 | 228 | 96 | 295 | 6.44e-45 | 152 |
| MS.gene60995.t1 | AT2G46810 | 43.939 | 198 | 99 | 4 | 27 | 223 | 112 | 298 | 7.39e-41 | 142 |
| MS.gene60995.t1 | AT3G61950 | 43.842 | 203 | 93 | 5 | 26 | 223 | 117 | 303 | 9.83e-41 | 142 |
| MS.gene60995.t1 | AT5G65320 | 43.169 | 183 | 84 | 3 | 30 | 202 | 96 | 268 | 1.55e-40 | 140 |
| MS.gene60995.t1 | AT2G46810 | 43.939 | 198 | 99 | 4 | 27 | 223 | 172 | 358 | 1.78e-40 | 142 |
| MS.gene60995.t1 | AT2G46810 | 43.719 | 199 | 98 | 4 | 27 | 223 | 184 | 370 | 3.15e-40 | 142 |
| MS.gene60995.t1 | AT3G61950 | 43.842 | 203 | 93 | 5 | 26 | 223 | 168 | 354 | 4.06e-40 | 141 |
| MS.gene60995.t1 | AT3G61950 | 45.562 | 169 | 72 | 4 | 25 | 189 | 116 | 268 | 1.15e-37 | 133 |
| MS.gene60995.t1 | AT3G61950 | 45.833 | 168 | 71 | 4 | 26 | 189 | 168 | 319 | 4.68e-37 | 133 |
| MS.gene60995.t1 | AT2G46810 | 45.506 | 178 | 83 | 4 | 27 | 202 | 112 | 277 | 2.02e-35 | 128 |
| MS.gene60995.t1 | AT3G06120 | 35.227 | 176 | 102 | 2 | 36 | 202 | 1 | 173 | 9.99e-32 | 115 |
| MS.gene60995.t1 | AT5G53210 | 62.338 | 77 | 28 | 1 | 27 | 103 | 94 | 169 | 8.45e-26 | 103 |
| MS.gene60995.t1 | AT5G53210 | 66.667 | 69 | 22 | 1 | 27 | 95 | 94 | 161 | 9.73e-26 | 103 |
| MS.gene60995.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.35e-13 | 66.2 |
| MS.gene60995.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.35e-13 | 66.2 |
Find 43 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAATTCTTCCAAGTAAA+TGG | 0.199817 | 8.1:+37721542 | None:intergenic |
| TTGTCCTAGTGAGAATTCTA+AGG | 0.334781 | 8.1:+37722451 | None:intergenic |
| ACCCTTTGAACATAGGATTC+AGG | 0.351099 | 8.1:+37723456 | None:intergenic |
| ATGTGTATTTGTTAGGTGTT+TGG | 0.351401 | 8.1:+37722532 | None:intergenic |
| GTCTTGGATGTGTATTTGTT+AGG | 0.355555 | 8.1:+37722525 | None:intergenic |
| AGCTATGGCAGCTTTGGTCT+TGG | 0.365189 | 8.1:+37722509 | None:intergenic |
| TCTTTGTTCTTACAAACTCT+TGG | 0.388402 | 8.1:+37723573 | None:intergenic |
| TGTGTATTTGTTAGGTGTTT+GGG | 0.389980 | 8.1:+37722533 | None:intergenic |
| TAGCTCCTTCACAAACTCTA+TGG | 0.424567 | 8.1:+37722689 | None:intergenic |
| ACAGCAGTTCACCATTTACT+TGG | 0.428976 | 8.1:-37721553 | MS.gene60995:CDS |
| GATATCAGCTATGGCAGCTT+TGG | 0.431877 | 8.1:+37722503 | None:intergenic |
| TGCATATACCTTGGCACTGA+TGG | 0.451216 | 8.1:+37722329 | None:intergenic |
| TGTCACTACCATACAACCTT+TGG | 0.451551 | 8.1:-37722361 | MS.gene60995:CDS |
| GAAACAAACCCTTTGAACAT+AGG | 0.458862 | 8.1:+37723449 | None:intergenic |
| GAAGCTGCTTCACTAATTTG+TGG | 0.468225 | 8.1:-37721517 | MS.gene60995:CDS |
| GTAGAATACCAAAGGTTGTA+TGG | 0.470288 | 8.1:+37722353 | None:intergenic |
| GCCTGAATCCTATGTTCAAA+GGG | 0.476318 | 8.1:-37723457 | MS.gene60995:intron |
| AGGACAACTAACAAAATTAG+TGG | 0.489302 | 8.1:-37722424 | MS.gene60995:CDS |
| TTGTGTATCCTCAATATACA+TGG | 0.490488 | 8.1:-37722557 | MS.gene60995:CDS |
| CCATTTACTTGGAAGAATTG+AGG | 0.491479 | 8.1:-37721542 | MS.gene60995:CDS |
| ATGTATATGAAGGTTGAAGA+AGG | 0.503265 | 8.1:-37721607 | MS.gene60995:intron |
| CATTGAGATGTAGGATGCTA+AGG | 0.511349 | 8.1:+37722382 | None:intergenic |
| GTTTGGGACCATGTATATTG+AGG | 0.512489 | 8.1:+37722549 | None:intergenic |
| CAACTAACAAAATTAGTGGC+TGG | 0.512924 | 8.1:-37722420 | MS.gene60995:CDS |
| GGTGACCAAGCCTCAATAGT+AGG | 0.516200 | 8.1:-37722717 | MS.gene60995:CDS |
| TTCCAACTTGGTTCAGTAGA+CGG | 0.525532 | 8.1:-37721583 | MS.gene60995:CDS |
| TGCCTGAATCCTATGTTCAA+AGG | 0.527020 | 8.1:-37723458 | MS.gene60995:CDS |
| GTTGAAGAAGGATTCCAACT+TGG | 0.528504 | 8.1:-37721595 | MS.gene60995:CDS |
| TGGTAGTGACATTGAGATGT+AGG | 0.548971 | 8.1:+37722373 | None:intergenic |
| CACCACCTACTATTGAGGCT+TGG | 0.549608 | 8.1:+37722712 | None:intergenic |
| TGCCGTCTACTGAACCAAGT+TGG | 0.552934 | 8.1:+37721581 | None:intergenic |
| AACAATGAATAATCCTCAAG+TGG | 0.569610 | 8.1:-37723622 | MS.gene60995:CDS |
| TGTAACCTCGATATCAGCTA+TGG | 0.576417 | 8.1:+37722494 | None:intergenic |
| CAAACCTTAGAATTCTCACT+AGG | 0.582899 | 8.1:-37722455 | MS.gene60995:CDS |
| ATAATCCTCAAGTGGTGCAA+AGG | 0.583756 | 8.1:-37723614 | MS.gene60995:CDS |
| TATGGCACCACCTACTATTG+AGG | 0.605310 | 8.1:+37722707 | None:intergenic |
| ATTCTCACTAGGACAAGACC+AGG | 0.613739 | 8.1:-37722444 | MS.gene60995:CDS |
| AGCACAAAACAATGAAGACA+TGG | 0.633394 | 8.1:-37722610 | MS.gene60995:CDS |
| ATTCTACTCCATCAGTGCCA+AGG | 0.634691 | 8.1:-37722337 | MS.gene60995:intron |
| AGCTGCCATAGCTGATATCG+AGG | 0.641430 | 8.1:-37722499 | MS.gene60995:CDS |
| CTGATGGAGTAGAATACCAA+AGG | 0.657988 | 8.1:+37722345 | None:intergenic |
| GACCAAGCCTCAATAGTAGG+TGG | 0.661400 | 8.1:-37722714 | MS.gene60995:CDS |
| TGGTGCCATAGAGTTTGTGA+AGG | 0.669387 | 8.1:-37722694 | MS.gene60995:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATAAGCAAAAAATATT+AGG | + | chr8.1:37723043-37723062 | None:intergenic | 10.0% |
| !! | TTATTTATTTATGTATATGA+AGG | - | chr8.1:37723532-37723551 | MS.gene60995:CDS | 10.0% |
| !!! | AATTTTTTTGTTTTGTTATA+GGG | - | chr8.1:37722411-37722430 | MS.gene60995:CDS | 10.0% |
| !!! | TTTGTTAATTTTTATTGTAA+TGG | - | chr8.1:37723359-37723378 | MS.gene60995:intron | 10.0% |
| !! | AATGAATTAATCAATATTAG+AGG | - | chr8.1:37723131-37723150 | MS.gene60995:intron | 15.0% |
| !! | AATTAATCAATGAATCTAAA+AGG | + | chr8.1:37722960-37722979 | None:intergenic | 15.0% |
| !! | ATATTTGGCTAAAATATATA+TGG | - | chr8.1:37723492-37723511 | MS.gene60995:CDS | 15.0% |
| !!! | CAATTTTTTTGTTTTGTTAT+AGG | - | chr8.1:37722410-37722429 | MS.gene60995:CDS | 15.0% |
| !!! | GAATTTTCATAATTTATACA+AGG | + | chr8.1:37723466-37723485 | None:intergenic | 15.0% |
| !!! | TACTTAATTTTTTTGTTGTT+GGG | - | chr8.1:37721746-37721765 | MS.gene60995:intron | 15.0% |
| !!! | TTATATTTCTATCTCTAATT+TGG | - | chr8.1:37722876-37722895 | MS.gene60995:intron | 15.0% |
| !! | AAAGCAAAAGAAAGAAAAAA+TGG | + | chr8.1:37721992-37722011 | None:intergenic | 20.0% |
| !! | ATTACTATCATATCAAATGA+AGG | + | chr8.1:37722857-37722876 | None:intergenic | 20.0% |
| !!! | CATTGATTAATTCATGTATT+AGG | - | chr8.1:37722968-37722987 | MS.gene60995:intron | 20.0% |
| !!! | GTACTTAATTTTTTTGTTGT+TGG | - | chr8.1:37721745-37721764 | MS.gene60995:intron | 20.0% |
| !!! | TATTCTTTACATGTTCTAAA+TGG | - | chr8.1:37722358-37722377 | MS.gene60995:CDS | 20.0% |
| !!! | TTTTTCCTTATAATAGTGAT+CGG | + | chr8.1:37722933-37722952 | None:intergenic | 20.0% |
| ! | AATGTTACCATAATTTCAAC+TGG | + | chr8.1:37722224-37722243 | None:intergenic | 25.0% |
| ! | ATGTTACCATAATTTCAACT+GGG | + | chr8.1:37722223-37722242 | None:intergenic | 25.0% |
| ! | ATTACTGCAAAAATTAGAGA+TGG | + | chr8.1:37723245-37723264 | None:intergenic | 25.0% |
| ! | TACACAAAAAATTGTGCAAA+AGG | + | chr8.1:37722579-37722598 | None:intergenic | 25.0% |
| ! | TCATTGTGTAATAATGTGTT+TGG | + | chr8.1:37723019-37723038 | None:intergenic | 25.0% |
| ! | TGAAAATTCAGAGAGATATT+TGG | - | chr8.1:37723477-37723496 | MS.gene60995:CDS | 25.0% |
| ! | TTACTGCAAAAATTAGAGAT+GGG | + | chr8.1:37723244-37723263 | None:intergenic | 25.0% |
| !! | TATACATGAAGCTTTTCAAA+TGG | + | chr8.1:37722331-37722350 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+TGG | - | chr8.1:37723048-37723067 | MS.gene60995:intron | 25.0% |
| !!! | GTTCATTCATTTGTTTTCTA+CGG | + | chr8.1:37721647-37721666 | None:intergenic | 25.0% |
| !!! | TAATGTTTTTGATGTCTTTG+AGG | + | chr8.1:37722196-37722215 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTGCTTTTGTA+TGG | - | chr8.1:37721996-37722015 | MS.gene60995:intron | 25.0% |
| AACAATGAATAATCCTCAAG+TGG | - | chr8.1:37721527-37721546 | MS.gene60995:CDS | 30.0% | |
| ACAAAAAATTGTGCAAAAGG+TGG | + | chr8.1:37722576-37722595 | None:intergenic | 30.0% | |
| ACACTTTATGACTATCAATG+AGG | - | chr8.1:37721886-37721905 | MS.gene60995:intron | 30.0% | |
| AGGACAACTAACAAAATTAG+TGG | - | chr8.1:37722725-37722744 | MS.gene60995:intron | 30.0% | |
| ATGTATATGAAGGTTGAAGA+AGG | - | chr8.1:37723542-37723561 | MS.gene60995:CDS | 30.0% | |
| ATTTCCCTTAATAGCAAAGA+TGG | - | chr8.1:37721794-37721813 | MS.gene60995:intron | 30.0% | |
| CAATATAGTTGCATATACCT+TGG | + | chr8.1:37722832-37722851 | None:intergenic | 30.0% | |
| GCAAAAGAAAGAAAAAATGG+AGG | + | chr8.1:37721989-37722008 | None:intergenic | 30.0% | |
| TAATGTCCCAGTTGAAATTA+TGG | - | chr8.1:37722214-37722233 | MS.gene60995:intron | 30.0% | |
| TCTTTGTTCTTACAAACTCT+TGG | + | chr8.1:37721579-37721598 | None:intergenic | 30.0% | |
| TGCTTTGTGAAAGATGTAAT+AGG | - | chr8.1:37721934-37721953 | MS.gene60995:intron | 30.0% | |
| TTGTGTATCCTCAATATACA+TGG | - | chr8.1:37722592-37722611 | MS.gene60995:CDS | 30.0% | |
| TTTATGACTATCAATGAGGT+GGG | - | chr8.1:37721890-37721909 | MS.gene60995:intron | 30.0% | |
| TTTCCCTTAATAGCAAAGAT+GGG | - | chr8.1:37721795-37721814 | MS.gene60995:intron | 30.0% | |
| ! | AAGCATATTTGTGCATGTTT+TGG | + | chr8.1:37721919-37721938 | None:intergenic | 30.0% |
| ! | ACTAATTTTGTTAGTTGTCC+TGG | + | chr8.1:37722726-37722745 | None:intergenic | 30.0% |
| ! | ATGTGTATTTGTTAGGTGTT+TGG | + | chr8.1:37722620-37722639 | None:intergenic | 30.0% |
| ! | CTGTGATTTAAAACCTTGTT+TGG | + | chr8.1:37722075-37722094 | None:intergenic | 30.0% |
| ! | TGTGTATTTGTTAGGTGTTT+GGG | + | chr8.1:37722619-37722638 | None:intergenic | 30.0% |
| AGCACAAAACAATGAAGACA+TGG | - | chr8.1:37722539-37722558 | MS.gene60995:CDS | 35.0% | |
| CAAACCTTAGAATTCTCACT+AGG | - | chr8.1:37722694-37722713 | MS.gene60995:CDS | 35.0% | |
| CAACTAACAAAATTAGTGGC+TGG | - | chr8.1:37722729-37722748 | MS.gene60995:intron | 35.0% | |
| CCATTTACTTGGAAGAATTG+AGG | - | chr8.1:37723607-37723626 | MS.gene60995:CDS | 35.0% | |
| CCTCAATTCTTCCAAGTAAA+TGG | + | chr8.1:37723610-37723629 | None:intergenic | 35.0% | |
| CTTTATGACTATCAATGAGG+TGG | - | chr8.1:37721889-37721908 | MS.gene60995:intron | 35.0% | |
| GAAACAAACCCTTTGAACAT+AGG | + | chr8.1:37721703-37721722 | None:intergenic | 35.0% | |
| GTAGAATACCAAAGGTTGTA+TGG | + | chr8.1:37722799-37722818 | None:intergenic | 35.0% | |
| GTCTTGGATGTGTATTTGTT+AGG | + | chr8.1:37722627-37722646 | None:intergenic | 35.0% | |
| TCTCTCCGATCACTATTATA+AGG | - | chr8.1:37722925-37722944 | MS.gene60995:intron | 35.0% | |
| TTCCCTTAATAGCAAAGATG+GGG | - | chr8.1:37721796-37721815 | MS.gene60995:intron | 35.0% | |
| TTGTCCTAGTGAGAATTCTA+AGG | + | chr8.1:37722701-37722720 | None:intergenic | 35.0% | |
| ! | ACGCTATTTCAACTCTTTCT+AGG | - | chr8.1:37723096-37723115 | MS.gene60995:intron | 35.0% |
| AAGTGGTGCAAAGGAAAAAG+AGG | - | chr8.1:37721544-37721563 | MS.gene60995:CDS | 40.0% | |
| ACAGCAGTTCACCATTTACT+TGG | - | chr8.1:37723596-37723615 | MS.gene60995:CDS | 40.0% | |
| ACCCTTTGAACATAGGATTC+AGG | + | chr8.1:37721696-37721715 | None:intergenic | 40.0% | |
| ATAATCCTCAAGTGGTGCAA+AGG | - | chr8.1:37721535-37721554 | MS.gene60995:CDS | 40.0% | |
| ATTGAGTCTATGGTTAAGCG+CGG | + | chr8.1:37722173-37722192 | None:intergenic | 40.0% | |
| CATTGAGATGTAGGATGCTA+AGG | + | chr8.1:37722770-37722789 | None:intergenic | 40.0% | |
| CTGATGGAGTAGAATACCAA+AGG | + | chr8.1:37722807-37722826 | None:intergenic | 40.0% | |
| GAAGCTGCTTCACTAATTTG+TGG | - | chr8.1:37723632-37723651 | MS.gene60995:CDS | 40.0% | |
| GCCTGAATCCTATGTTCAAA+GGG | - | chr8.1:37721692-37721711 | MS.gene60995:intron | 40.0% | |
| GTTGAAGAAGGATTCCAACT+TGG | - | chr8.1:37723554-37723573 | MS.gene60995:CDS | 40.0% | |
| TAGCTCCTTCACAAACTCTA+TGG | + | chr8.1:37722463-37722482 | None:intergenic | 40.0% | |
| TGCCTGAATCCTATGTTCAA+AGG | - | chr8.1:37721691-37721710 | MS.gene60995:intron | 40.0% | |
| TGTAACCTCGATATCAGCTA+TGG | + | chr8.1:37722658-37722677 | None:intergenic | 40.0% | |
| TGTCACTACCATACAACCTT+TGG | - | chr8.1:37722788-37722807 | MS.gene60995:intron | 40.0% | |
| TTCCAACTTGGTTCAGTAGA+CGG | - | chr8.1:37723566-37723585 | MS.gene60995:CDS | 40.0% | |
| ! | GTCTTTGAGGATTGAGTCTA+TGG | + | chr8.1:37722183-37722202 | None:intergenic | 40.0% |
| ! | GTTTGGGACCATGTATATTG+AGG | + | chr8.1:37722603-37722622 | None:intergenic | 40.0% |
| ! | TGGTAGTGACATTGAGATGT+AGG | + | chr8.1:37722779-37722798 | None:intergenic | 40.0% |
| ! | TTTTTCCTTTGCACCACTTG+AGG | + | chr8.1:37721543-37721562 | None:intergenic | 40.0% |
| !! | CTCCCCATCTTTGCTATTAA+GGG | + | chr8.1:37721801-37721820 | None:intergenic | 40.0% |
| !! | TCTCCCCATCTTTGCTATTA+AGG | + | chr8.1:37721802-37721821 | None:intergenic | 40.0% |
| ACTTCTTGCGCTACCAAACA+AGG | - | chr8.1:37722059-37722078 | MS.gene60995:intron | 45.0% | |
| ATTCTACTCCATCAGTGCCA+AGG | - | chr8.1:37722812-37722831 | MS.gene60995:intron | 45.0% | |
| ATTCTCACTAGGACAAGACC+AGG | - | chr8.1:37722705-37722724 | MS.gene60995:CDS | 45.0% | |
| GATATCAGCTATGGCAGCTT+TGG | + | chr8.1:37722649-37722668 | None:intergenic | 45.0% | |
| TATGGCACCACCTACTATTG+AGG | + | chr8.1:37722445-37722464 | None:intergenic | 45.0% | |
| ! | TGCATATACCTTGGCACTGA+TGG | + | chr8.1:37722823-37722842 | None:intergenic | 45.0% |
| !! | TGGTGCCATAGAGTTTGTGA+AGG | - | chr8.1:37722455-37722474 | MS.gene60995:CDS | 45.0% |
| AGCTGCCATAGCTGATATCG+AGG | - | chr8.1:37722650-37722669 | MS.gene60995:CDS | 50.0% | |
| CACCACCTACTATTGAGGCT+TGG | + | chr8.1:37722440-37722459 | None:intergenic | 50.0% | |
| GACCAAGCCTCAATAGTAGG+TGG | - | chr8.1:37722435-37722454 | MS.gene60995:CDS | 50.0% | |
| GGTGACCAAGCCTCAATAGT+AGG | - | chr8.1:37722432-37722451 | MS.gene60995:CDS | 50.0% | |
| TGCCGTCTACTGAACCAAGT+TGG | + | chr8.1:37723571-37723590 | None:intergenic | 50.0% | |
| ! | AGCTATGGCAGCTTTGGTCT+TGG | + | chr8.1:37722643-37722662 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 37721513 | 37723658 | 37721513 | ID=MS.gene60995 |
| chr8.1 | mRNA | 37721513 | 37723658 | 37721513 | ID=MS.gene60995.t1;Parent=MS.gene60995 |
| chr8.1 | exon | 37723458 | 37723658 | 37723458 | ID=MS.gene60995.t1.exon1;Parent=MS.gene60995.t1 |
| chr8.1 | CDS | 37723458 | 37723658 | 37723458 | ID=cds.MS.gene60995.t1;Parent=MS.gene60995.t1 |
| chr8.1 | exon | 37722338 | 37722739 | 37722338 | ID=MS.gene60995.t1.exon2;Parent=MS.gene60995.t1 |
| chr8.1 | CDS | 37722338 | 37722739 | 37722338 | ID=cds.MS.gene60995.t1;Parent=MS.gene60995.t1 |
| chr8.1 | exon | 37721513 | 37721617 | 37721513 | ID=MS.gene60995.t1.exon3;Parent=MS.gene60995.t1 |
| chr8.1 | CDS | 37721513 | 37721617 | 37721513 | ID=cds.MS.gene60995.t1;Parent=MS.gene60995.t1 |
| Gene Sequence |
| Protein sequence |
