Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60999.t1 | XP_003628788.1 | 100 | 110 | 0 | 0 | 1 | 110 | 267 | 376 | 2.60E-59 | 237.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60999.t1 | Q84UQ3 | 61.4 | 114 | 38 | 4 | 1 | 110 | 256 | 367 | 4.5e-31 | 135.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60999.t1 | G7LH15 | 100.0 | 110 | 0 | 0 | 1 | 110 | 267 | 376 | 1.9e-59 | 237.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene60999.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60999.t1 | MTR_8g066730 | 100.000 | 110 | 0 | 0 | 1 | 110 | 267 | 376 | 9.11e-78 | 233 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60999.t1 | AT1G32360 | 61.739 | 115 | 38 | 5 | 1 | 110 | 271 | 384 | 1.12e-36 | 128 |
MS.gene60999.t1 | AT2G35430 | 54.464 | 112 | 36 | 5 | 1 | 110 | 154 | 252 | 8.77e-31 | 109 |
MS.gene60999.t1 | AT3G19360 | 40.541 | 111 | 48 | 5 | 1 | 109 | 280 | 374 | 4.91e-15 | 69.7 |
MS.gene60999.t1 | AT3G19360 | 40.541 | 111 | 48 | 5 | 1 | 109 | 280 | 374 | 4.91e-15 | 69.7 |
Find 33 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATTATCAGCATGAGTTT+TGG | 0.299688 | 8.1:+37755576 | None:intergenic |
CAGATATGGAGGTGGGCTTA+TGG | 0.316746 | 8.1:-37755659 | MS.gene60999:CDS |
GATAAAATCAGTAGGATATA+TGG | 0.337131 | 8.1:-37755436 | MS.gene60999:CDS |
GGTTCAGATGTTTATCATCT+TGG | 0.353688 | 8.1:-37755532 | MS.gene60999:CDS |
TTCTGATGAGCTCTCTGTCC+TGG | 0.376334 | 8.1:+37755472 | None:intergenic |
CTGTAGCACCATGAGCAAAA+TGG | 0.399102 | 8.1:+37757245 | None:intergenic |
GTTGCATCAAATCCTCCTAT+TGG | 0.403665 | 8.1:-37755553 | MS.gene60999:CDS |
TGTAATAAGTGGGAGATGAC+TGG | 0.409320 | 8.1:-37757292 | None:intergenic |
ACTACAGAATTACACAGATA+TGG | 0.413749 | 8.1:-37755673 | MS.gene60999:intron |
ATGACTGGGTATTGTCCCTT+TGG | 0.419828 | 8.1:-37757277 | MS.gene60999:CDS |
TGATAAACATCTGAACCAAT+AGG | 0.439056 | 8.1:+37755538 | None:intergenic |
TGTTGCGTCTGACACAAAAC+AGG | 0.449665 | 8.1:-37755608 | MS.gene60999:CDS |
CAATGGAAGGTCTCTGTGAA+GGG | 0.514650 | 8.1:+37755506 | None:intergenic |
TCAGTAGGATATATGGCGAT+TGG | 0.521816 | 8.1:-37755429 | MS.gene60999:CDS |
AAAATGGCATTTGTTACCAA+AGG | 0.546912 | 8.1:+37757261 | None:intergenic |
GACAGAGAGCTCATCAGAAG+TGG | 0.547469 | 8.1:-37755468 | MS.gene60999:CDS |
GGCCTCTGACTCACAATGGA+AGG | 0.553370 | 8.1:+37755493 | None:intergenic |
AAATGGCATTTGTTACCAAA+GGG | 0.557541 | 8.1:+37757262 | None:intergenic |
GTAATAAGTGGGAGATGACT+GGG | 0.557999 | 8.1:-37757291 | None:intergenic |
TCCATTGTGAGTCAGAGGCC+AGG | 0.568730 | 8.1:-37755490 | MS.gene60999:CDS |
ACAATGGAAGGTCTCTGTGA+AGG | 0.570880 | 8.1:+37755505 | None:intergenic |
GACCTTCCATTGTGAGTCAG+AGG | 0.582385 | 8.1:-37755495 | MS.gene60999:CDS |
TATGGAGGTGGGCTTATGGA+AGG | 0.583879 | 8.1:-37755655 | MS.gene60999:CDS |
TCCTGGCCTCTGACTCACAA+TGG | 0.594508 | 8.1:+37755489 | None:intergenic |
CAAAACTCATGCTGATAATG+TGG | 0.598802 | 8.1:-37755575 | MS.gene60999:CDS |
AGAGCTCATCAGAAGTGGAA+AGG | 0.606297 | 8.1:-37755463 | MS.gene60999:CDS |
GAATTACACAGATATGGAGG+TGG | 0.619283 | 8.1:-37755667 | MS.gene60999:CDS |
AAGGTCCCGATAAAATCAGT+AGG | 0.622761 | 8.1:-37755444 | MS.gene60999:CDS |
TAAACATCTGAACCAATAGG+AGG | 0.638482 | 8.1:+37755541 | None:intergenic |
AATTACACAGATATGGAGGT+GGG | 0.647774 | 8.1:-37755666 | MS.gene60999:CDS |
ATGGAAGGAGAAAGCAGAGA+CGG | 0.651866 | 8.1:-37755640 | MS.gene60999:CDS |
ACAGAATTACACAGATATGG+AGG | 0.670966 | 8.1:-37755670 | MS.gene60999:intron |
GTTGCGTCTGACACAAAACA+GGG | 0.716294 | 8.1:-37755607 | MS.gene60999:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAGATGTATAATAAATA+GGG | + | chr8.1:37756438-37756457 | None:intergenic | 10.0% |
!! | ATTTATATAAAATAGGTTAT+AGG | + | chr8.1:37756972-37756991 | None:intergenic | 10.0% |
!!! | GATTAAAGATTTTAATTTTA+TGG | - | chr8.1:37755507-37755526 | MS.gene60999:CDS | 10.0% |
!! | AAAAGATGTATAATAAATAG+GGG | + | chr8.1:37756437-37756456 | None:intergenic | 15.0% |
!! | AAAGAAATAATTAATGTAGT+TGG | + | chr8.1:37756405-37756424 | None:intergenic | 15.0% |
!! | AAGACAGATTTATATAAAAT+AGG | + | chr8.1:37756979-37756998 | None:intergenic | 15.0% |
!! | GAAAAAGATGTATAATAAAT+AGG | + | chr8.1:37756439-37756458 | None:intergenic | 15.0% |
!!! | TTTTAATTTTATGGTAATTG+AGG | - | chr8.1:37755516-37755535 | MS.gene60999:CDS | 15.0% |
!! | ACATAACAAAATCATCAAAA+TGG | + | chr8.1:37755481-37755500 | None:intergenic | 20.0% |
!! | GACAAAAAAAATTCTCAAAA+GGG | + | chr8.1:37756355-37756374 | None:intergenic | 20.0% |
!!! | ATATATCCTACTGATTTTAT+CGG | + | chr8.1:37757253-37757272 | None:intergenic | 20.0% |
!!! | GGTTTTTTCTTCATTTAATA+TGG | - | chr8.1:37755689-37755708 | MS.gene60999:intron | 20.0% |
! | AAGAAAAAACCAATCTTGTA+TGG | + | chr8.1:37755680-37755699 | None:intergenic | 25.0% |
! | ATGAAAAGTAATCGCAAAAA+AGG | + | chr8.1:37756068-37756087 | None:intergenic | 25.0% |
! | GATAAAATCAGTAGGATATA+TGG | - | chr8.1:37757252-37757271 | MS.gene60999:CDS | 25.0% |
! | GGACAAAAAAAATTCTCAAA+AGG | + | chr8.1:37756356-37756375 | None:intergenic | 25.0% |
!! | ATTTGAATTTGAAGCATACA+AGG | + | chr8.1:37756094-37756113 | None:intergenic | 25.0% |
!! | GTTATAAATAGTTTGTGTTG+TGG | - | chr8.1:37755589-37755608 | MS.gene60999:CDS | 25.0% |
!! | TACCATTTGGATACAATTTT+GGG | - | chr8.1:37755631-37755650 | MS.gene60999:CDS | 25.0% |
!! | TCAAAAGGGTCTTATAATTA+GGG | + | chr8.1:37756341-37756360 | None:intergenic | 25.0% |
!! | TCTTTTTATCCATACAAGAT+TGG | - | chr8.1:37755668-37755687 | MS.gene60999:CDS | 25.0% |
!! | TTACCATTTGGATACAATTT+TGG | - | chr8.1:37755630-37755649 | MS.gene60999:CDS | 25.0% |
!! | TTTTCATTGTGCAAAACATA+AGG | + | chr8.1:37755960-37755979 | None:intergenic | 25.0% |
!! | TTTTCTTAATCAGAAAGTGA+AGG | + | chr8.1:37756124-37756143 | None:intergenic | 25.0% |
!!! | ATAGAAAGTGCTATTAGAAT+TGG | - | chr8.1:37755563-37755582 | MS.gene60999:CDS | 25.0% |
!!! | ATTCCCGTTATTTTTTGAAA+AGG | - | chr8.1:37756575-37756594 | MS.gene60999:intron | 25.0% |
!!! | GATGATTTTGTTATGTGAAT+TGG | - | chr8.1:37755485-37755504 | MS.gene60999:CDS | 25.0% |
!!! | TATATCCTACTGATTTTATC+GGG | + | chr8.1:37757252-37757271 | None:intergenic | 25.0% |
!!! | TTCCCGTTATTTTTTGAAAA+GGG | - | chr8.1:37756576-37756595 | MS.gene60999:intron | 25.0% |
AATGTAGTTGGAAATAGCAA+AGG | + | chr8.1:37756393-37756412 | None:intergenic | 30.0% | |
ACCAAAACAAAATTGACACT+AGG | + | chr8.1:37755769-37755788 | None:intergenic | 30.0% | |
ACTACAGAATTACACAGATA+TGG | - | chr8.1:37757015-37757034 | MS.gene60999:intron | 30.0% | |
ACTGTAAACCAAAAAACACT+TGG | + | chr8.1:37756041-37756060 | None:intergenic | 30.0% | |
ACTTTCATTGCTTTGATGTT+TGG | - | chr8.1:37756710-37756729 | MS.gene60999:intron | 30.0% | |
ATGTAGTTGGAAATAGCAAA+GGG | + | chr8.1:37756392-37756411 | None:intergenic | 30.0% | |
ATTGCATAGATTACTCAAGT+CGG | + | chr8.1:37755876-37755895 | None:intergenic | 30.0% | |
CCAAAACAAAATTGACACTA+GGG | + | chr8.1:37755768-37755787 | None:intergenic | 30.0% | |
GAAAAGAATAGTTTCATGAG+TGG | - | chr8.1:37756164-37756183 | MS.gene60999:intron | 30.0% | |
GTAATGTATATGTGCATGTT+TGG | + | chr8.1:37756877-37756896 | None:intergenic | 30.0% | |
TAATCTGTGTTGTCAAATAG+TGG | - | chr8.1:37756220-37756239 | MS.gene60999:intron | 30.0% | |
TGATAAACATCTGAACCAAT+AGG | + | chr8.1:37757153-37757172 | None:intergenic | 30.0% | |
TGATATGTAGTATGTGAATG+TGG | - | chr8.1:37755815-37755834 | MS.gene60999:intron | 30.0% | |
TGTACTTAATCGCATATTTG+CGG | + | chr8.1:37756293-37756312 | None:intergenic | 30.0% | |
TTCCCAAAATTGTATCCAAA+TGG | + | chr8.1:37755636-37755655 | None:intergenic | 30.0% | |
! | AAAATGGCATTTGTTACCAA+AGG | + | chr8.1:37755430-37755449 | None:intergenic | 30.0% |
! | AAATGGCATTTGTTACCAAA+GGG | + | chr8.1:37755429-37755448 | None:intergenic | 30.0% |
! | AATAACGGGAATTAAGATAG+TGG | + | chr8.1:37756567-37756586 | None:intergenic | 30.0% |
! | AGGCCCTTTTCAAAAAATAA+CGG | + | chr8.1:37756582-37756601 | None:intergenic | 30.0% |
! | CTCAAAAGGGTCTTATAATT+AGG | + | chr8.1:37756342-37756361 | None:intergenic | 30.0% |
! | TGAAAAGGGCCTTATAATTA+GGG | - | chr8.1:37756590-37756609 | MS.gene60999:intron | 30.0% |
! | TTGAAAAGGGCCTTATAATT+AGG | - | chr8.1:37756589-37756608 | MS.gene60999:intron | 30.0% |
!! | AATTTTATCCTCTAAGAGAG+AGG | + | chr8.1:37756503-37756522 | None:intergenic | 30.0% |
!! | ATTTTATCCTCTAAGAGAGA+GGG | + | chr8.1:37756502-37756521 | None:intergenic | 30.0% |
!!! | GCAAATTTCCAAGTGTTTTT+TGG | - | chr8.1:37756030-37756049 | MS.gene60999:intron | 30.0% |
!!! | TTTTGTTTTGGTTGATGCTA+AGG | - | chr8.1:37755777-37755796 | MS.gene60999:intron | 30.0% |
AAACATGCACGTAATGAACA+AGG | + | chr8.1:37756736-37756755 | None:intergenic | 35.0% | |
AAGAATAGTTTCATGAGTGG+TGG | - | chr8.1:37756167-37756186 | MS.gene60999:intron | 35.0% | |
AATTACACAGATATGGAGGT+GGG | - | chr8.1:37757022-37757041 | MS.gene60999:intron | 35.0% | |
ACAGAATTACACAGATATGG+AGG | - | chr8.1:37757018-37757037 | MS.gene60999:intron | 35.0% | |
AGAATAGTTTCATGAGTGGT+GGG | - | chr8.1:37756168-37756187 | MS.gene60999:intron | 35.0% | |
CATTGTGCAAAACATAAGGA+AGG | + | chr8.1:37755956-37755975 | None:intergenic | 35.0% | |
GGTTCAGATGTTTATCATCT+TGG | - | chr8.1:37757156-37757175 | MS.gene60999:intron | 35.0% | |
TAAACATCTGAACCAATAGG+AGG | + | chr8.1:37757150-37757169 | None:intergenic | 35.0% | |
TGTAGTTGGAAATAGCAAAG+GGG | + | chr8.1:37756391-37756410 | None:intergenic | 35.0% | |
TTGTTCATTACGTGCATGTT+TGG | - | chr8.1:37756735-37756754 | MS.gene60999:intron | 35.0% | |
! | AAGGGTCTTATAATTAGGGA+CGG | + | chr8.1:37756337-37756356 | None:intergenic | 35.0% |
! | AGCAAAGGGGTCTTATAAAA+AGG | + | chr8.1:37756378-37756397 | None:intergenic | 35.0% |
! | CAAAACTCATGCTGATAATG+TGG | - | chr8.1:37757113-37757132 | MS.gene60999:intron | 35.0% |
! | CACATTATCAGCATGAGTTT+TGG | + | chr8.1:37757115-37757134 | None:intergenic | 35.0% |
! | GCAAAGGGGTCTTATAAAAA+GGG | + | chr8.1:37756377-37756396 | None:intergenic | 35.0% |
! | GGCCCTTTTCAAAAAATAAC+GGG | + | chr8.1:37756581-37756600 | None:intergenic | 35.0% |
! | TGAAAGTATGCTGTCAATTG+CGG | + | chr8.1:37756697-37756716 | None:intergenic | 35.0% |
!! | CCCTAGTGTCAATTTTGTTT+TGG | - | chr8.1:37755765-37755784 | MS.gene60999:intron | 35.0% |
!!! | AACAAATGCCATTTTGCTCA+TGG | - | chr8.1:37755435-37755454 | MS.gene60999:CDS | 35.0% |
!!! | TTATCAGCATGAGTTTTGGA+AGG | + | chr8.1:37757111-37757130 | None:intergenic | 35.0% |
AAGGTCCCGATAAAATCAGT+AGG | - | chr8.1:37757244-37757263 | MS.gene60999:intron | 40.0% | |
GAATTACACAGATATGGAGG+TGG | - | chr8.1:37757021-37757040 | MS.gene60999:intron | 40.0% | |
GTGGGTTCAGAATGAATAGA+TGG | - | chr8.1:37756186-37756205 | MS.gene60999:intron | 40.0% | |
GTTGCATCAAATCCTCCTAT+TGG | - | chr8.1:37757135-37757154 | MS.gene60999:intron | 40.0% | |
TACCTCCGTCCCTAATTATA+AGG | + | chr8.1:37756348-37756329 | None:intergenic | 40.0% | |
TACGTGCATGTTTGGATTGA+CGG | - | chr8.1:37756743-37756762 | MS.gene60999:intron | 40.0% | |
TATGATAGCACAGTACGTAG+TGG | - | chr8.1:37756641-37756660 | MS.gene60999:intron | 40.0% | |
TATGTGCATGTTTGGATCAG+CGG | + | chr8.1:37756869-37756888 | None:intergenic | 40.0% | |
TCAGTAGGATATATGGCGAT+TGG | - | chr8.1:37757259-37757278 | MS.gene60999:CDS | 40.0% | |
! | AAGGGCCTTATAATTAGGGA+CGG | - | chr8.1:37756594-37756613 | MS.gene60999:intron | 40.0% |
! | GGCAGTGTTTTCTTACCATT+TGG | - | chr8.1:37755618-37755637 | MS.gene60999:CDS | 40.0% |
! | TAGTTTGTGTTGTGGAGTTG+TGG | - | chr8.1:37755597-37755616 | MS.gene60999:CDS | 40.0% |
AAACCAACCCTCTCTCTTAG+AGG | - | chr8.1:37756492-37756511 | MS.gene60999:intron | 45.0% | |
ACAATGGAAGGTCTCTGTGA+AGG | + | chr8.1:37757186-37757205 | None:intergenic | 45.0% | |
AGAGCTCATCAGAAGTGGAA+AGG | - | chr8.1:37757225-37757244 | MS.gene60999:intron | 45.0% | |
ATGGAAGGAGAAAGCAGAGA+CGG | - | chr8.1:37757048-37757067 | MS.gene60999:intron | 45.0% | |
ATTGACACTAGGGACAATGC+AGG | + | chr8.1:37755758-37755777 | None:intergenic | 45.0% | |
CAATGGAAGGTCTCTGTGAA+GGG | + | chr8.1:37757185-37757204 | None:intergenic | 45.0% | |
CGGTGAGATTGGCATAATCA+TGG | + | chr8.1:37756849-37756868 | None:intergenic | 45.0% | |
CTGTAGCACCATGAGCAAAA+TGG | + | chr8.1:37755446-37755465 | None:intergenic | 45.0% | |
GTTGCGTCTGACACAAAACA+GGG | - | chr8.1:37757081-37757100 | MS.gene60999:intron | 45.0% | |
TGTTGCGTCTGACACAAAAC+AGG | - | chr8.1:37757080-37757099 | MS.gene60999:intron | 45.0% | |
TTGACACTAGGGACAATGCA+GGG | + | chr8.1:37755757-37755776 | None:intergenic | 45.0% | |
! | ATGACTGGGTATTGTCCCTT+TGG | - | chr8.1:37755411-37755430 | MS.gene60999:CDS | 45.0% |
! | GGTCTTATAATTAGGGACGG+AGG | + | chr8.1:37756334-37756353 | None:intergenic | 45.0% |
! | TATCCTCTAAGAGAGAGGGT+TGG | + | chr8.1:37756498-37756517 | None:intergenic | 45.0% |
!!! | CATTTTGCTCATGGTGCTAC+AGG | - | chr8.1:37755444-37755463 | MS.gene60999:CDS | 45.0% |
ACGGAGGTAGTAGCGTTTAC+AGG | - | chr8.1:37756613-37756632 | MS.gene60999:intron | 50.0% | |
CGGAGGTAGTAGCGTTTACA+GGG | - | chr8.1:37756614-37756633 | MS.gene60999:intron | 50.0% | |
GACAGAGAGCTCATCAGAAG+TGG | - | chr8.1:37757220-37757239 | MS.gene60999:intron | 50.0% | |
GACCTTCCATTGTGAGTCAG+AGG | - | chr8.1:37757193-37757212 | MS.gene60999:intron | 50.0% | |
GTTTGGATCAGCGGTGAGAT+TGG | + | chr8.1:37756860-37756879 | None:intergenic | 50.0% | |
TTCTGATGAGCTCTCTGTCC+TGG | + | chr8.1:37757219-37757238 | None:intergenic | 50.0% | |
! | CAGATATGGAGGTGGGCTTA+TGG | - | chr8.1:37757029-37757048 | MS.gene60999:intron | 50.0% |
! | GGCCTTATAATTAGGGACGG+AGG | - | chr8.1:37756597-37756616 | MS.gene60999:intron | 50.0% |
! | TATGGAGGTGGGCTTATGGA+AGG | - | chr8.1:37757033-37757052 | MS.gene60999:intron | 50.0% |
CGAGTTTAGCAAGATCGCGG+TGG | - | chr8.1:37756766-37756785 | MS.gene60999:intron | 55.0% | |
CGGCGAGTTTAGCAAGATCG+CGG | - | chr8.1:37756763-37756782 | MS.gene60999:intron | 55.0% | |
GGCCTCTGACTCACAATGGA+AGG | + | chr8.1:37757198-37757217 | None:intergenic | 55.0% | |
TCCATTGTGAGTCAGAGGCC+AGG | - | chr8.1:37757198-37757217 | MS.gene60999:intron | 55.0% | |
TCCTGGCCTCTGACTCACAA+TGG | + | chr8.1:37757202-37757221 | None:intergenic | 55.0% | |
! | GGTGCTACAGCGCTATCGTG+TGG | - | chr8.1:37756241-37756260 | MS.gene60999:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 37755411 | 37757299 | 37755411 | ID=MS.gene60999 |
chr8.1 | mRNA | 37755411 | 37757299 | 37755411 | ID=MS.gene60999.t1;Parent=MS.gene60999 |
chr8.1 | exon | 37757245 | 37757299 | 37757245 | ID=MS.gene60999.t1.exon1;Parent=MS.gene60999.t1 |
chr8.1 | CDS | 37757245 | 37757299 | 37757245 | ID=cds.MS.gene60999.t1;Parent=MS.gene60999.t1 |
chr8.1 | exon | 37755411 | 37755688 | 37755411 | ID=MS.gene60999.t1.exon2;Parent=MS.gene60999.t1 |
chr8.1 | CDS | 37755411 | 37755688 | 37755411 | ID=cds.MS.gene60999.t1;Parent=MS.gene60999.t1 |
Gene Sequence |
Protein sequence |