AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61030.t1 MTR_8g095330 77.895 95 17 1 2 92 24 118 3.91e-46 151
MS.gene61030.t1 MTR_3g097320 74.737 95 20 1 2 92 23 117 1.19e-44 147
MS.gene61030.t1 MTR_4g099240 76.404 89 17 1 8 92 30 118 2.32e-44 146
MS.gene61030.t1 MTR_2g006330 75.824 91 18 1 6 92 27 117 1.99e-43 144
MS.gene61030.t1 MTR_8g079560 72.527 91 21 1 6 92 46 136 6.02e-43 143
MS.gene61030.t1 MTR_5g064540 69.565 92 24 1 6 93 27 118 7.67e-43 142
MS.gene61030.t1 MTR_4g086855 75.281 89 18 1 8 92 48 136 7.95e-43 142
MS.gene61030.t1 MTR_1g034030 75.281 89 18 1 8 92 49 137 1.09e-42 142
MS.gene61030.t1 MTR_1g034030 82.051 78 14 0 15 92 60 137 1.87e-42 140
MS.gene61030.t1 MTR_5g064540 69.565 92 24 1 6 93 27 118 7.83e-42 137
MS.gene61030.t1 MTR_3g086940 78.481 79 17 0 14 92 40 118 4.66e-41 137
MS.gene61030.t1 MTR_8g089975 75.294 85 20 1 8 92 34 117 5.21e-41 137
MS.gene61030.t1 MTR_5g018050 68.132 91 25 1 6 92 41 131 5.43e-41 137
MS.gene61030.t1 MTR_5g018050 73.418 79 21 0 14 92 20 98 1.77e-40 135
MS.gene61030.t1 MTR_5g018050 68.132 91 25 1 6 92 41 131 2.61e-40 133
MS.gene61030.t1 MTR_5g013550 68.539 89 24 1 8 92 31 119 3.24e-38 130
MS.gene61030.t1 MTR_4g099220 67.416 89 25 1 8 92 36 124 1.99e-35 122
MS.gene61030.t1 MTR_8g088740 62.821 78 29 0 15 92 40 117 5.56e-34 115
MS.gene61030.t1 MTR_4g086855 82.500 40 7 0 53 92 2 41 6.74e-19 78.6
MS.gene61030.t1 MTR_8g089975 82.500 40 7 0 53 92 2 41 2.70e-18 76.6
MS.gene61030.t1 MTR_2g006330 80.000 40 8 0 53 92 2 41 6.96e-18 75.9
MS.gene61030.t1 MTR_5g075100 50.000 72 36 0 20 91 68 139 1.91e-17 75.9
MS.gene61030.t1 MTR_2g049790 44.444 72 40 0 20 91 68 139 2.55e-17 75.5
MS.gene61030.t1 MTR_6g012990 46.914 81 43 0 10 90 54 134 4.30e-17 74.3
MS.gene61030.t1 MTR_6g048250 44.444 81 45 0 10 90 54 134 4.46e-17 74.7
MS.gene61030.t1 MTR_6g012990 46.914 81 43 0 10 90 54 134 5.55e-17 74.3
MS.gene61030.t1 MTR_6g012980 43.421 76 43 0 15 90 113 188 1.73e-16 73.2
MS.gene61030.t1 MTR_5g088350 40.260 77 46 0 15 91 53 129 2.53e-16 72.4
MS.gene61030.t1 MTR_5g088350 40.260 77 46 0 15 91 53 129 2.92e-16 72.4
MS.gene61030.t1 MTR_1g013700 45.946 74 39 1 18 91 56 128 2.97e-16 72.4
MS.gene61030.t1 MTR_6g048250 44.444 81 45 0 10 90 54 134 3.35e-16 72.0
MS.gene61030.t1 MTR_5g088350 40.260 77 46 0 15 91 53 129 3.91e-16 72.0
MS.gene61030.t1 MTR_6g048250 44.444 81 45 0 10 90 54 134 4.52e-16 72.0
MS.gene61030.t1 MTR_5g067150 38.961 77 47 0 15 91 49 125 1.53e-15 70.5
MS.gene61030.t1 MTR_5g067150 38.961 77 47 0 15 91 49 125 1.72e-15 70.1
MS.gene61030.t1 MTR_4g123940 38.462 78 48 0 14 91 65 142 2.64e-15 69.3
MS.gene61030.t1 MTR_4g123940 38.462 78 48 0 14 91 65 142 3.39e-15 69.3
MS.gene61030.t1 MTR_1g076370 39.474 76 45 1 16 90 62 137 4.77e-15 68.9
MS.gene61030.t1 MTR_5g067150 40.541 74 44 0 18 91 52 125 6.51e-15 68.6
MS.gene61030.t1 MTR_2g045470 38.356 73 45 0 18 90 63 135 1.04e-14 68.2
MS.gene61030.t1 MTR_7g072605 41.558 77 45 0 15 91 57 133 1.13e-14 67.8
MS.gene61030.t1 MTR_8g024590 40.541 74 44 0 18 91 60 133 1.36e-14 67.8
MS.gene61030.t1 MTR_8g024600 40.541 74 44 0 18 91 60 133 1.36e-14 67.8
MS.gene61030.t1 MTR_3g099920 40.741 81 48 0 10 90 54 134 1.38e-14 67.8
MS.gene61030.t1 MTR_3g466480 45.122 82 44 1 10 91 56 136 1.73e-14 67.4
MS.gene61030.t1 MTR_4g128820 41.333 75 44 0 16 90 51 125 3.18e-14 66.6
MS.gene61030.t1 MTR_4g029020 35.484 93 57 2 1 91 36 127 5.79e-14 65.9
MS.gene61030.t1 MTR_3g466400 41.892 74 42 1 18 91 57 129 6.45e-14 65.9
MS.gene61030.t1 MTR_4g114670 35.227 88 55 1 5 90 39 126 9.93e-14 65.1
MS.gene61030.t1 MTR_4g114670 35.227 88 55 1 5 90 39 126 1.06e-13 65.1
MS.gene61030.t1 MTR_4g006970 39.189 74 44 1 18 91 63 135 1.20e-13 65.1
MS.gene61030.t1 MTR_4g114670 34.066 91 58 1 2 90 36 126 1.87e-13 64.3
MS.gene61030.t1 MTR_8g086380 42.466 73 41 1 19 91 70 141 2.00e-13 64.3
MS.gene61030.t1 MTR_7g072575 39.189 74 44 1 18 91 55 127 2.68e-13 63.9
MS.gene61030.t1 MTR_4g131060 35.714 84 50 2 8 91 54 133 9.06e-13 62.4
MS.gene61030.t1 MTR_2g016340 36.264 91 55 2 2 90 37 126 2.34e-12 61.2
MS.gene61030.t1 MTR_5g075060 40.278 72 42 1 20 91 57 127 3.66e-12 60.8
MS.gene61030.t1 MTR_2g105010 36.486 74 46 1 18 91 57 129 1.18e-11 59.3
MS.gene61030.t1 MTR_7g116530 53.125 64 18 2 13 75 26 78 1.61e-11 55.8
MS.gene61030.t1 MTR_1g103760 36.620 71 44 1 20 90 57 126 3.89e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61030.t1 AT3G50500 74.725 91 19 1 6 92 46 136 3.97e-45 149
MS.gene61030.t1 AT3G50500 74.725 91 19 1 6 92 46 136 4.76e-45 149
MS.gene61030.t1 AT1G10940 78.022 91 16 1 6 92 27 117 1.53e-44 147
MS.gene61030.t1 AT1G60940 76.923 91 17 1 6 92 27 117 6.08e-44 145
MS.gene61030.t1 AT1G60940 76.923 91 17 1 6 92 27 117 6.08e-44 145
MS.gene61030.t1 AT5G66880 70.330 91 23 1 6 92 45 135 1.49e-43 144
MS.gene61030.t1 AT5G66880 70.330 91 23 1 6 92 45 135 1.49e-43 144
MS.gene61030.t1 AT4G33950 75.281 89 18 1 8 92 46 134 9.65e-43 142
MS.gene61030.t1 AT4G33950 75.281 89 18 1 8 92 46 134 1.24e-42 142
MS.gene61030.t1 AT5G63650 74.725 91 19 1 6 92 27 117 6.48e-42 140
MS.gene61030.t1 AT1G10940 71.717 99 16 2 6 92 27 125 1.47e-41 139
MS.gene61030.t1 AT5G08590 71.429 91 22 1 6 92 27 117 1.18e-40 137
MS.gene61030.t1 AT4G40010 78.481 79 17 0 14 92 39 117 4.25e-40 135
MS.gene61030.t1 AT2G23030 66.316 95 28 1 2 92 23 117 8.45e-37 126
MS.gene61030.t1 AT1G78290 67.033 91 26 1 6 92 27 117 3.41e-36 125
MS.gene61030.t1 AT1G78290 67.033 91 26 1 6 92 27 117 3.41e-36 125
MS.gene61030.t1 AT4G11373 69.620 79 17 1 15 93 9 80 2.21e-31 106
MS.gene61030.t1 AT2G26980 40.260 77 46 0 15 91 54 130 2.01e-18 78.2
MS.gene61030.t1 AT2G26980 40.260 77 46 0 15 91 54 130 2.39e-18 78.2
MS.gene61030.t1 AT2G26980 40.260 77 46 0 15 91 64 140 2.45e-18 78.2
MS.gene61030.t1 AT2G26980 40.260 77 46 0 15 91 54 130 3.07e-18 76.6
MS.gene61030.t1 AT3G01090 46.914 81 43 0 10 90 77 157 6.89e-18 77.0
MS.gene61030.t1 AT3G01090 46.914 81 43 0 10 90 54 134 7.04e-18 77.0
MS.gene61030.t1 AT3G01090 46.914 81 43 0 10 90 54 134 7.04e-18 77.0
MS.gene61030.t1 AT2G26980 41.892 74 43 0 18 91 57 130 1.05e-17 76.6
MS.gene61030.t1 AT5G39440 45.679 81 44 0 10 90 54 134 2.55e-17 75.5
MS.gene61030.t1 AT3G29160 45.679 81 44 0 10 90 55 135 1.03e-16 73.6
MS.gene61030.t1 AT3G29160 45.679 81 44 0 10 90 55 135 1.35e-16 73.6
MS.gene61030.t1 AT3G29160 45.679 81 44 0 10 90 55 135 1.35e-16 73.6
MS.gene61030.t1 AT5G35410 38.462 91 54 1 2 90 36 126 1.63e-16 73.2
MS.gene61030.t1 AT5G35410 38.462 91 54 1 2 90 36 126 1.75e-16 72.8
MS.gene61030.t1 AT1G30270 41.667 72 42 0 20 91 76 147 4.76e-16 72.0
MS.gene61030.t1 AT2G30360 43.836 73 41 0 19 91 66 138 4.77e-16 72.0
MS.gene61030.t1 AT1G30270 41.667 72 42 0 20 91 76 147 4.79e-16 72.0
MS.gene61030.t1 AT5G21326 37.662 77 48 0 15 91 53 129 8.62e-16 71.2
MS.gene61030.t1 AT4G24400 41.892 74 43 0 18 91 52 125 1.04e-15 70.9
MS.gene61030.t1 AT2G25090 43.243 74 42 0 18 91 59 132 1.29e-15 70.5
MS.gene61030.t1 AT4G24400 41.892 74 43 0 18 91 52 125 1.36e-15 70.5
MS.gene61030.t1 AT5G01820 43.421 76 42 1 16 91 63 137 1.91e-15 70.1
MS.gene61030.t1 AT1G01140 40.541 74 44 0 18 91 62 135 1.95e-15 70.1
MS.gene61030.t1 AT1G01140 40.541 74 44 0 18 91 62 135 1.96e-15 70.1
MS.gene61030.t1 AT1G01140 40.541 74 44 0 18 91 62 135 1.96e-15 70.1
MS.gene61030.t1 AT5G08590 72.500 40 11 0 53 92 2 41 2.64e-15 68.9
MS.gene61030.t1 AT1G48260 38.961 77 47 0 14 90 50 126 6.13e-15 68.6
MS.gene61030.t1 AT5G21222 37.662 77 48 0 15 91 53 129 6.37e-15 68.6
MS.gene61030.t1 AT5G21222 37.662 77 48 0 15 91 53 129 6.37e-15 68.6
MS.gene61030.t1 AT5G21222 37.662 77 48 0 15 91 53 129 6.37e-15 68.6
MS.gene61030.t1 AT5G21222 37.662 77 48 0 15 91 53 129 6.37e-15 68.6
MS.gene61030.t1 AT5G25110 41.892 74 42 1 18 91 86 158 8.12e-15 68.6
MS.gene61030.t1 AT2G38490 46.575 73 38 1 19 91 72 143 8.46e-15 68.2
MS.gene61030.t1 AT3G17510 34.146 82 54 0 10 91 55 136 3.66e-14 66.6
MS.gene61030.t1 AT5G01810 38.095 84 48 2 8 91 48 127 4.52e-14 66.2
MS.gene61030.t1 AT5G01810 38.095 84 48 2 8 91 48 127 4.79e-14 66.2
MS.gene61030.t1 AT5G01810 38.095 84 48 2 8 91 48 127 4.79e-14 66.2
MS.gene61030.t1 AT5G10930 41.892 74 42 1 18 91 56 128 6.20e-14 65.9
MS.gene61030.t1 AT4G18700 42.466 73 41 1 19 91 70 141 1.77e-13 64.7
MS.gene61030.t1 AT5G45810 41.667 72 41 1 19 90 72 142 2.17e-13 64.3
MS.gene61030.t1 AT4G14580 38.158 76 46 1 16 90 62 137 4.87e-13 63.2
MS.gene61030.t1 AT1G29230 41.096 73 42 1 19 91 118 189 3.94e-12 60.8
MS.gene61030.t1 AT2G34180 41.096 73 42 1 19 91 101 172 1.15e-11 59.3
MS.gene61030.t1 AT5G57630 38.667 75 45 1 16 90 53 126 1.28e-11 59.3
MS.gene61030.t1 AT5G57630 38.667 75 45 1 16 90 53 126 1.29e-11 59.3
MS.gene61030.t1 AT4G30960 36.486 74 46 1 18 91 67 139 1.61e-11 58.9
MS.gene61030.t1 AT5G58380 35.714 84 50 2 8 91 48 127 1.90e-11 58.9
MS.gene61030.t1 AT3G23000 36.842 76 47 1 16 90 66 141 2.72e-11 58.5
MS.gene61030.t1 AT5G07070 35.526 76 48 1 16 91 53 127 3.26e-11 58.2

Find 28 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTATTGCTAAATGATT+AGG 0.250308 8.1:-38157932 None:intergenic
TTACTATTGCTAAATGATTA+GGG 0.261994 8.1:-38157931 None:intergenic
TTCTTTCGGCAGCTGATATA+TGG 0.264209 8.1:+38158121 MS.gene61030:CDS
TCCTTGAAACGAATTATATT+CGG 0.302255 8.1:-38157793 None:intergenic
GCTGAACCGACCAGCATTAC+AGG 0.337585 8.1:-38157990 None:intergenic
TCCAGGCTAGATATTTCTTT+CGG 0.398144 8.1:+38158107 MS.gene61030:intron
CCCGAATATAATTCGTTTCA+AGG 0.408070 8.1:+38157792 MS.gene61030:CDS
AGGCTTGATGGTGCAATTCA+TGG 0.410361 8.1:-38157324 None:intergenic
AAGCTTCACCAGAGGCTTGA+TGG 0.417893 8.1:-38157336 None:intergenic
CCTTGAAACGAATTATATTC+GGG 0.472706 8.1:-38157792 None:intergenic
ATCAAGCCTCTGGTGAAGCT+TGG 0.488088 8.1:+38157338 MS.gene61030:CDS
GAATTGCACCATCAAGCCTC+TGG 0.521090 8.1:+38157328 MS.gene61030:CDS
TTATCAACCACAGATCTCTT+CGG 0.555612 8.1:+38157767 MS.gene61030:CDS
ATAGTAACACAATATGCAGC+TGG 0.566363 8.1:+38157947 MS.gene61030:CDS
TTTCCAGATTGATGAGAATG+TGG 0.567042 8.1:+38157735 MS.gene61030:intron
TTTGAGAGGACCTGTAATGC+TGG 0.569556 8.1:+38157980 MS.gene61030:CDS
GGTGAAGCTTGGCTTTCTCG+AGG 0.584023 8.1:+38157349 MS.gene61030:CDS
AGAGGACCTGTAATGCTGGT+CGG 0.592162 8.1:+38157984 MS.gene61030:CDS
AACACAATATGCAGCTGGAG+GGG 0.600335 8.1:+38157952 MS.gene61030:CDS
TGTCTATTACTGTCATGCTA+TGG 0.610007 8.1:+38158144 MS.gene61030:CDS
TAACACAATATGCAGCTGGA+GGG 0.615840 8.1:+38157951 MS.gene61030:CDS
TACTATTGCTAAATGATTAG+GGG 0.616535 8.1:-38157930 None:intergenic
TGGTCGGTTCAGCGAAGATG+AGG 0.629226 8.1:+38158000 MS.gene61030:CDS
CTGGAGGGGAACTCTTTGAG+AGG 0.634190 8.1:+38157966 MS.gene61030:CDS
GTAACACAATATGCAGCTGG+AGG 0.654060 8.1:+38157950 MS.gene61030:CDS
TCGGGTGCCGAAGAGATCTG+TGG 0.687028 8.1:-38157774 None:intergenic
AGAAAGCCAAGCTTCACCAG+AGG 0.702351 8.1:-38157344 None:intergenic
GAATATAATTCGTTTCAAGG+AGG 0.712614 8.1:+38157795 MS.gene61030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAACTTTTCAAAATC+AGG - chr8.1:38157636-38157655 None:intergenic 15.0%
!!! ATAATAACTTTTCAAAATCA+GGG - chr8.1:38157635-38157654 None:intergenic 15.0%
!! AAATTAAAGAAATTGAACAG+GGG + chr8.1:38157563-38157582 MS.gene61030:intron 20.0%
!! ACCAATGTTTATTAAAATAG+GGG - chr8.1:38157481-38157500 None:intergenic 20.0%
!! CAAATTAAAGAAATTGAACA+GGG + chr8.1:38157562-38157581 MS.gene61030:intron 20.0%
!! CACCAATGTTTATTAAAATA+GGG - chr8.1:38157482-38157501 None:intergenic 20.0%
!! TTACTATTGCTAAATGATTA+GGG - chr8.1:38157934-38157953 None:intergenic 20.0%
!!! GTTATTATTTGTTGAAAAGA+AGG + chr8.1:38157647-38157666 MS.gene61030:intron 20.0%
!!! TAATAACTTTTCAAAATCAG+GGG - chr8.1:38157634-38157653 None:intergenic 20.0%
! CCACCAATGTTTATTAAAAT+AGG - chr8.1:38157483-38157502 None:intergenic 25.0%
! GCAAATTAAAGAAATTGAAC+AGG + chr8.1:38157561-38157580 MS.gene61030:intron 25.0%
! GTTACTATTGCTAAATGATT+AGG - chr8.1:38157935-38157954 None:intergenic 25.0%
! TACTATTGCTAAATGATTAG+GGG - chr8.1:38157933-38157952 None:intergenic 25.0%
! TCCTTGAAACGAATTATATT+CGG - chr8.1:38157796-38157815 None:intergenic 25.0%
!! TTGTTAACTGTTACTTCAAT+GGG + chr8.1:38157882-38157901 MS.gene61030:intron 25.0%
!!! AAAGCTATTATTTTGACATC+TGG + chr8.1:38157674-38157693 MS.gene61030:intron 25.0%
!!! AACCCTTTTAAGAGAAAAAA+TGG - chr8.1:38157446-38157465 None:intergenic 25.0%
!!! AAGCTATTATTTTGACATCT+GGG + chr8.1:38157675-38157694 MS.gene61030:intron 25.0%
!!! AGACCATTTTTTCTCTTAAA+AGG + chr8.1:38157440-38157459 MS.gene61030:intron 25.0%
!!! CCTATTTTAATAAACATTGG+TGG + chr8.1:38157480-38157499 MS.gene61030:intron 25.0%
!!! GACCATTTTTTCTCTTAAAA+GGG + chr8.1:38157441-38157460 MS.gene61030:intron 25.0%
!!! TATTTTTCCTTTGTTTATCC+AGG + chr8.1:38158090-38158109 MS.gene61030:intron 25.0%
!!! TCCCCTATTTTAATAAACAT+TGG + chr8.1:38157477-38157496 MS.gene61030:intron 25.0%
ATGAGGTTAATAACTTGACA+TGG + chr8.1:38158017-38158036 MS.gene61030:intron 30.0%
CCTTGAAACGAATTATATTC+GGG - chr8.1:38157795-38157814 None:intergenic 30.0%
GAATATAATTCGTTTCAAGG+AGG + chr8.1:38157795-38157814 MS.gene61030:CDS 30.0%
! GACTTTATTTGTTTACCTGT+TGG + chr8.1:38157822-38157841 MS.gene61030:intron 30.0%
! GTTGTTAACTGTTACTTCAA+TGG + chr8.1:38157881-38157900 MS.gene61030:intron 30.0%
! TGTTAACTGTTACTTCAATG+GGG + chr8.1:38157883-38157902 MS.gene61030:intron 30.0%
ATAGTAACACAATATGCAGC+TGG + chr8.1:38157947-38157966 MS.gene61030:CDS 35.0%
CCCGAATATAATTCGTTTCA+AGG + chr8.1:38157792-38157811 MS.gene61030:CDS 35.0%
TAATTCGTTTCAAGGAGGTA+AGG + chr8.1:38157800-38157819 MS.gene61030:intron 35.0%
TATCTAGCCTGGATAAACAA+AGG - chr8.1:38158100-38158119 None:intergenic 35.0%
TCAATACAAACTGATCCAAC+AGG - chr8.1:38157840-38157859 None:intergenic 35.0%
TCCAGGCTAGATATTTCTTT+CGG + chr8.1:38158107-38158126 MS.gene61030:intron 35.0%
TGTCTATTACTGTCATGCTA+TGG + chr8.1:38158144-38158163 MS.gene61030:CDS 35.0%
TTATCAACCACAGATCTCTT+CGG + chr8.1:38157767-38157786 MS.gene61030:CDS 35.0%
TTTCCAGATTGATGAGAATG+TGG + chr8.1:38157735-38157754 MS.gene61030:intron 35.0%
TTTGCACAAATGCATTGAAG+CGG - chr8.1:38157546-38157565 None:intergenic 35.0%
!! TACTTCAATGGGGTTTTGAT+TGG + chr8.1:38157893-38157912 MS.gene61030:intron 35.0%
AAGCGGCCTAAAAAATTCGA+GGG - chr8.1:38157529-38157548 None:intergenic 40.0%
TAACACAATATGCAGCTGGA+GGG + chr8.1:38157951-38157970 MS.gene61030:CDS 40.0%
TAGCCACATTCTCATCAATC+TGG - chr8.1:38157741-38157760 None:intergenic 40.0%
TTCTTTCGGCAGCTGATATA+TGG + chr8.1:38158121-38158140 MS.gene61030:CDS 40.0%
TTGCCTTGAATACCGATACT+CGG + chr8.1:38157373-38157392 MS.gene61030:intron 40.0%
!! ATACCGAGTATCGGTATTCA+AGG - chr8.1:38157379-38157398 None:intergenic 40.0%
AACACAATATGCAGCTGGAG+GGG + chr8.1:38157952-38157971 MS.gene61030:CDS 45.0%
ACCTCGAGATTATTCTAGCC+AGG - chr8.1:38157412-38157431 None:intergenic 45.0%
GAAGCGGCCTAAAAAATTCG+AGG - chr8.1:38157530-38157549 None:intergenic 45.0%
GCCGAAAGAAATATCTAGCC+TGG - chr8.1:38158111-38158130 None:intergenic 45.0%
GGAGCATGAATACCGAGTAT+CGG - chr8.1:38157388-38157407 None:intergenic 45.0%
GTAACACAATATGCAGCTGG+AGG + chr8.1:38157950-38157969 MS.gene61030:CDS 45.0%
TCCTGGCTAGAATAATCTCG+AGG + chr8.1:38157408-38157427 MS.gene61030:intron 45.0%
TCGAGATTATTCTAGCCAGG+AGG - chr8.1:38157409-38157428 None:intergenic 45.0%
TTTGAGAGGACCTGTAATGC+TGG + chr8.1:38157980-38157999 MS.gene61030:CDS 45.0%
!!! CAATGGGGTTTTGATTGGTC+AGG + chr8.1:38157898-38157917 MS.gene61030:intron 45.0%
!!! GAGCAGCCCTCGAATTTTTT+AGG + chr8.1:38157520-38157539 MS.gene61030:intron 45.0%
AAGCTTCACCAGAGGCTTGA+TGG - chr8.1:38157339-38157358 None:intergenic 50.0%
AGAAAGCCAAGCTTCACCAG+AGG - chr8.1:38157347-38157366 None:intergenic 50.0%
AGAGGACCTGTAATGCTGGT+CGG + chr8.1:38157984-38158003 MS.gene61030:CDS 50.0%
ATCAAGCCTCTGGTGAAGCT+TGG + chr8.1:38157338-38157357 MS.gene61030:CDS 50.0%
GAATTGCACCATCAAGCCTC+TGG + chr8.1:38157328-38157347 MS.gene61030:CDS 50.0%
!!! TGGGGTTTTGATTGGTCAGG+TGG + chr8.1:38157901-38157920 MS.gene61030:intron 50.0%
CTCGGTATTCATGCTCCTCC+TGG + chr8.1:38157391-38157410 MS.gene61030:intron 55.0%
CTGGAGGGGAACTCTTTGAG+AGG + chr8.1:38157966-38157985 MS.gene61030:CDS 55.0%
GCTGAACCGACCAGCATTAC+AGG - chr8.1:38157993-38158012 None:intergenic 55.0%
! GGTGAAGCTTGGCTTTCTCG+AGG + chr8.1:38157349-38157368 MS.gene61030:CDS 55.0%
! TGGTCGGTTCAGCGAAGATG+AGG + chr8.1:38158000-38158019 MS.gene61030:CDS 55.0%
!! TCGGGTGCCGAAGAGATCTG+TGG - chr8.1:38157777-38157796 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 38157326 38158171 38157326 ID=MS.gene61030
chr8.1 mRNA 38157326 38158171 38157326 ID=MS.gene61030.t1;Parent=MS.gene61030
chr8.1 exon 38157326 38157370 38157326 ID=MS.gene61030.t1.exon1;Parent=MS.gene61030.t1
chr8.1 CDS 38157326 38157370 38157326 ID=cds.MS.gene61030.t1;Parent=MS.gene61030.t1
chr8.1 exon 38157742 38157816 38157742 ID=MS.gene61030.t1.exon2;Parent=MS.gene61030.t1
chr8.1 CDS 38157742 38157816 38157742 ID=cds.MS.gene61030.t1;Parent=MS.gene61030.t1
chr8.1 exon 38157920 38158021 38157920 ID=MS.gene61030.t1.exon3;Parent=MS.gene61030.t1
chr8.1 CDS 38157920 38158021 38157920 ID=cds.MS.gene61030.t1;Parent=MS.gene61030.t1
chr8.1 exon 38158112 38158171 38158112 ID=MS.gene61030.t1.exon4;Parent=MS.gene61030.t1
chr8.1 CDS 38158112 38158171 38158112 ID=cds.MS.gene61030.t1;Parent=MS.gene61030.t1
Gene Sequence

>MS.gene61030

ATGAATTGCACCATCAAGCCTCTGGTGAAGCTTGGCTTTCTCGAGGTTTGCCTTGAATACCGATACTCGGTATTCATGCTCCTCCTGGCTAGAATAATCTCGAGGTTTTCTCAAAGACCATTTTTTCTCTTAAAAGGGTTTTTTCGACGTTTCCCCTATTTTAATAAACATTGGTGGCGACTTCATTGTCTTTCGAGCAGCCCTCGAATTTTTTAGGCCGCTTCAATGCATTTGTGCAAATTAAAGAAATTGAACAGGGGATAGAAAAATTCAATTAAAAATTATAGCTTTCACACATGAAGCTTCCCCTGATTTTGAAAAGTTATTATTTGTTGAAAAGAAGGAAAAAAAGCTATTATTTTGACATCTGGGATTATCAGTTTTTTTTCTAATTTTTTCTGCTACTTCATTTCCAGATTGATGAGAATGTGGCTAGCGAGATTATCAACCACAGATCTCTTCGGCACCCGAATATAATTCGTTTCAAGGAGGTAAGGACTTTATTTGTTTACCTGTTGGATCAGTTTGTATTGATTACACTGTTAATTGTTCTGAGTTGTTAACTGTTACTTCAATGGGGTTTTGATTGGTCAGGTGGTTTTGACCCCTAATCATTTAGCAATAGTAACACAATATGCAGCTGGAGGGGAACTCTTTGAGAGGACCTGTAATGCTGGTCGGTTCAGCGAAGATGAGGTTAATAACTTGACATGGTTTCAGAATTTTCTGTTTCAGTGTCATTGTTGTTGTATTCATATCTCATTTATTTTTCCTTTGTTTATCCAGGCTAGATATTTCTTTCGGCAGCTGATATATGGTGTCTATTACTGTCATGCTATGGTATAA
Protein sequence

>MS.gene61030.t1

MNCTIKPLVKLGFLEIDENVASEIINHRSLRHPNIIRFKEVVLTPNHLAIVTQYAAGGELFERTCNAGRFSEDEARYFFRQLIYGVYYCHAMV