AlfalfaGEDB | MS.gene61098

M. sativa cultivar XinJiangDaYe / MS.gene61098

KEGG: K09215
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61098.t1	AES88847.1	92.3	182	12	1	1	180	1	182	3.50E-85	324.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61098.t1	G7JTS8	92.3	182	12	1	1	180	1	182	2.5e-85	324.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene61098.t1	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61098.t1	MTR_4g063510	92.308	182	12	1	1	180	1	182	2.17e-120	338
MS.gene61098.t1	MTR_1g076050	59.140	93	29	4	90	180	1	86	1.32e-24	92.4

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 37 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGCTTGTTGTTGTTG+TGG	0.508962	4.4:-42457560	None:intergenic
AACATTGGTCTAGGAAAATT+TGG	0.153978	4.4:-42457488	None:intergenic
AAGAAAACCTTGCCATGAGA+AGG	0.557385	4.4:+42457429	MS.gene61098:CDS
AATCTCCTATGCCATCTTTG+AGG	0.463913	4.4:+42457642	MS.gene61098:CDS
AGATAATGAATCTGGAGTTA+GGG	0.518844	4.4:+42457831	MS.gene61098:CDS
ATCATTCATTTGGAGGATTG+GGG	0.520501	4.4:-42457705	None:intergenic
ATGGAGGTGTCTTCAATCGA+TGG	0.576157	4.4:+42457731	MS.gene61098:CDS
ATGTTGATGCAGGGAACTGA+TGG	0.564366	4.4:+42457506	MS.gene61098:CDS
CAATGATGAGATAATGAATC+TGG	0.397042	4.4:+42457823	MS.gene61098:CDS
CATCATTCATTTGGAGGATT+GGG	0.266107	4.4:-42457706	None:intergenic

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAATGATGAGATAATGAATC+TGG	+	chr4.4:42457823-42457842	MS.gene61098:CDS	30.0%
TTGACATTATTCCTCAAAGA+TGG	-	chr4.4:42457656-42457675	None:intergenic	30.0%
TTGATTGAAGATGGAAACAA+TGG	-	chr4.4:42457327-42457346	None:intergenic	30.0%
ATCATTCATTTGGAGGATTG+GGG	-	chr4.4:42457708-42457727	None:intergenic	35.0%
CATCATTCATTTGGAGGATT+GGG	-	chr4.4:42457709-42457728	None:intergenic	35.0%
CCAAATGAATGATGAAATGG+AGG	+	chr4.4:42457715-42457734	MS.gene61098:CDS	35.0%
CCATTTCATCATTCATTTGG+AGG	-	chr4.4:42457715-42457734	None:intergenic	35.0%
CCTCCAAATGAATGATGAAA+TGG	+	chr4.4:42457712-42457731	MS.gene61098:CDS	35.0%
CCTCCATTTCATCATTCATT+TGG	-	chr4.4:42457718-42457737	None:intergenic	35.0%
GAGGGAATATATCAATCAGT+TGG	+	chr4.4:42457757-42457776	MS.gene61098:CDS	35.0%

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	42457317	42457859	42457317	ID=MS.gene61098
chr4.4	mRNA	42457317	42457859	42457317	ID=MS.gene61098.t1;Parent=MS.gene61098
chr4.4	exon	42457317	42457859	42457317	ID=MS.gene61098.t1.exon1;Parent=MS.gene61098.t1
chr4.4	CDS	42457317	42457859	42457317	ID=cds.MS.gene61098.t1;Parent=MS.gene61098.t1

Gene Sequence

>MS.gene61098

ATGGCTACCATTGTTTCCATCTTCAATCAACTCTTTTTTGCTTGCAAATTTTGCAACCAAGTTTTCACCAACTTCCAACTATTCAAAACACATCATGATTCTCATTTCGTTCAAGAAAACCTTGCCATGAGAAGGCATAACCATATCAGCTCTCAAAGAGTACTTCACCAACCAAATTTTCCTAGACCAATGTTGATGCAGGGAACTGATGGAAACTTTGCTGGAAATAGAGCTTTTCAGGAACCACAACAACAACAAGCTTTGTTGATCTCTCAACCAAGAGTCAATCAATTTTCAAATCCTAGCTTTCAGGTTGTTGCTTCACAATCTCCTATGCCATCTTTGAGGAATAATGTCAATGTTACTAACATGACATCATCTGTAGCTCCCCCAATCCTCCAAATGAATGATGAAATGGAGGTGTCTTCAATCGATGGAACGAGGGAATATATCAATCAGTTGGATAAACCAATTGATAACAATGTGTGTGCTAATTCTGCTAATATCAATGATGAGATAATGAATCTGGAGTTAGGGCTCTAG

Protein sequence

>MS.gene61098.t1

MATIVSIFNQLFFACKFCNQVFTNFQLFKTHHDSHFVQENLAMRRHNHISSQRVLHQPNFPRPMLMQGTDGNFAGNRAFQEPQQQQALLISQPRVNQFSNPSFQVVASQSPMPSLRNNVNVTNMTSSVAPPILQMNDEMEVSSIDGTREYINQLDKPIDNNVCANSANINDEIMNLELGL