AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61187

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61187.t1 MTR_1g013180 94.350 531 27 2 1 529 152 681 0.0 994
MS.gene61187.t1 MTR_1g013170 64.751 522 103 13 1 467 1 496 0.0 573
MS.gene61187.t1 MTR_7g117705 59.410 542 120 12 1 524 1 460 0.0 550
MS.gene61187.t1 MTR_3g106220 53.687 434 155 13 3 413 6 416 1.20e-132 400
MS.gene61187.t1 MTR_2g450070 51.163 344 143 6 3 325 16 355 3.55e-96 306
MS.gene61187.t1 MTR_2g450070 51.163 344 143 6 3 325 16 355 5.58e-96 306
MS.gene61187.t1 MTR_4g121020 56.126 253 109 2 2 254 28 278 6.57e-86 279
MS.gene61187.t1 MTR_4g121020 56.126 253 109 2 2 254 28 278 6.93e-86 279
MS.gene61187.t1 MTR_2g034960 53.876 258 115 1 1 258 25 278 8.61e-84 272
MS.gene61187.t1 MTR_4g131600 47.205 322 159 5 1 322 16 326 1.12e-83 271
MS.gene61187.t1 MTR_1g032570 51.538 260 109 3 4 253 10 262 3.65e-81 265
MS.gene61187.t1 MTR_8g079940 55.645 248 104 3 3 248 23 266 7.89e-81 262
MS.gene61187.t1 MTR_3g086100 54.839 248 104 2 5 248 13 256 9.40e-81 263
MS.gene61187.t1 MTR_4g131580 48.860 307 147 5 5 310 17 314 1.15e-80 264
MS.gene61187.t1 MTR_4g131570 46.769 325 157 5 3 322 15 328 7.25e-79 259
MS.gene61187.t1 MTR_1g013160 86.486 148 20 0 67 214 1 148 3.26e-76 238
MS.gene61187.t1 MTR_3g102590 50.196 255 72 3 2 253 5 207 2.53e-66 215
MS.gene61187.t1 MTR_3g102590 50.000 240 67 2 2 240 5 192 2.42e-61 200
MS.gene61187.t1 MTR_3g102600 41.433 321 90 8 1 321 4 226 1.66e-57 191
MS.gene61187.t1 MTR_3g086100 53.968 189 79 2 64 248 1 185 9.57e-56 195
MS.gene61187.t1 MTR_1g032570 50.500 200 82 3 64 253 1 193 2.57e-55 195
MS.gene61187.t1 MTR_3g102600 44.398 241 72 3 2 242 5 183 4.60e-51 173
MS.gene61187.t1 MTR_4g021760 38.683 243 121 4 5 247 11 225 2.75e-49 172
MS.gene61187.t1 MTR_4g021790 38.400 250 126 5 2 251 7 228 2.76e-46 163
MS.gene61187.t1 MTR_4g021855 37.600 250 128 4 2 251 7 228 4.35e-46 163
MS.gene61187.t1 MTR_4g021845 35.983 239 125 3 2 240 7 217 1.10e-43 154
MS.gene61187.t1 MTR_0450s0040 38.075 239 127 3 9 247 8 225 6.90e-43 156
MS.gene61187.t1 MTR_3g102600 38.182 275 72 7 47 321 1 177 9.13e-42 148
MS.gene61187.t1 MTR_4g121020 47.953 171 87 2 84 254 6 174 4.23e-41 156
MS.gene61187.t1 MTR_8g105600 33.841 328 186 9 5 318 9 319 1.61e-39 152
MS.gene61187.t1 MTR_7g026400 37.273 220 120 3 32 250 14 216 2.81e-35 140
MS.gene61187.t1 MTR_3g102600 39.286 196 57 3 47 242 1 134 3.82e-32 120
MS.gene61187.t1 MTR_6g045327 31.174 247 140 3 4 249 13 230 7.76e-32 127
MS.gene61187.t1 MTR_5g055260 34.413 247 107 8 2 248 7 198 5.37e-30 118
MS.gene61187.t1 MTR_8g032710 29.588 267 164 5 8 254 20 282 1.74e-26 112
MS.gene61187.t1 MTR_4g064730 45.192 104 57 0 162 265 102 205 3.89e-22 97.4
MS.gene61187.t1 MTR_3g092780 34.532 139 86 2 9 143 56 193 3.96e-22 100
MS.gene61187.t1 MTR_3g092780 34.532 139 86 2 9 143 56 193 5.49e-22 100
MS.gene61187.t1 MTR_6g016850 35.433 127 79 2 3 127 7 132 4.16e-21 90.9
MS.gene61187.t1 MTR_3g092780 34.286 140 86 3 9 143 56 194 7.80e-21 96.7
MS.gene61187.t1 MTR_3g092780 34.286 140 86 3 9 143 56 194 1.09e-20 96.3
MS.gene61187.t1 MTR_7g118260 35.220 159 89 4 2 152 5 157 3.88e-20 94.4
MS.gene61187.t1 MTR_4g023980 29.240 171 94 3 47 217 31 174 6.65e-20 87.8
MS.gene61187.t1 MTR_8g024260 34.965 143 82 2 11 142 38 180 8.39e-19 90.1
MS.gene61187.t1 MTR_7g118260 36.496 137 76 3 2 130 5 138 1.77e-18 89.0
MS.gene61187.t1 MTR_8g093040 34.677 124 81 0 4 127 13 136 2.32e-18 85.9
MS.gene61187.t1 MTR_7g089010 62.712 59 22 0 190 248 90 148 5.48e-18 85.1
MS.gene61187.t1 MTR_1g067110 35.246 122 76 2 9 127 85 206 9.21e-18 87.4
MS.gene61187.t1 MTR_1g067110 35.246 122 76 2 9 127 85 206 9.62e-18 87.0
MS.gene61187.t1 MTR_3g037390 33.871 124 79 1 9 129 24 147 2.70e-17 85.5
MS.gene61187.t1 MTR_4g061360 35.246 122 76 1 9 127 89 210 8.89e-17 84.3
MS.gene61187.t1 MTR_4g108880 32.258 124 81 1 9 129 33 156 4.79e-16 81.6
MS.gene61187.t1 MTR_5g014040 52.239 67 32 0 189 255 309 375 3.67e-15 78.6
MS.gene61187.t1 MTR_5g014040 33.835 133 84 2 5 136 14 143 3.31e-11 66.2
MS.gene61187.t1 MTR_2g090675 44.318 88 48 1 188 275 158 244 1.59e-14 76.3
MS.gene61187.t1 MTR_4g098870 57.895 57 24 0 189 245 308 364 2.71e-14 75.9
MS.gene61187.t1 MTR_4g098870 57.895 57 24 0 189 245 308 364 3.01e-14 75.9
MS.gene61187.t1 MTR_4g098870 57.895 57 24 0 189 245 328 384 3.18e-14 75.9
MS.gene61187.t1 MTR_4g098870 57.895 57 24 0 189 245 328 384 3.24e-14 75.9
MS.gene61187.t1 MTR_4g098870 57.895 57 24 0 189 245 347 403 3.31e-14 75.9
MS.gene61187.t1 MTR_4g078810 53.333 60 28 0 188 247 155 214 4.40e-14 74.7
MS.gene61187.t1 MTR_5g014040 48.611 72 32 1 189 255 269 340 3.22e-13 72.4
MS.gene61187.t1 MTR_6g453220 51.765 85 38 2 207 288 379 463 3.37e-13 72.4
MS.gene61187.t1 MTR_5g014040 48.611 72 32 1 189 255 309 380 3.63e-13 72.4
MS.gene61187.t1 MTR_5g014040 33.835 133 84 2 5 136 14 143 4.15e-11 65.9
MS.gene61187.t1 MTR_7g490310 33.094 139 72 3 11 128 11 149 8.48e-13 68.6
MS.gene61187.t1 MTR_4g106590 32.824 131 75 2 9 126 26 156 1.33e-12 67.4
MS.gene61187.t1 MTR_8g038620 31.884 138 74 3 11 128 11 148 1.42e-12 66.6
MS.gene61187.t1 MTR_1g080330 55.932 59 25 1 186 243 170 228 4.34e-12 67.4
MS.gene61187.t1 MTR_1g080330 55.932 59 25 1 186 243 170 228 6.56e-12 67.8
MS.gene61187.t1 MTR_1g093080 42.466 73 41 1 177 248 197 269 7.87e-12 67.4
MS.gene61187.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 1.22e-11 66.2
MS.gene61187.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 1.88e-11 65.9
MS.gene61187.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 2.23e-11 65.9
MS.gene61187.t1 MTR_1g053835 53.333 60 27 1 186 244 253 312 3.77e-11 65.5
MS.gene61187.t1 MTR_7g115530 58.929 56 22 1 189 243 216 271 4.19e-11 65.5
MS.gene61187.t1 MTR_5g017980 45.902 61 33 0 188 248 189 249 7.57e-11 63.9
MS.gene61187.t1 MTR_5g017980 45.902 61 33 0 188 248 190 250 7.76e-11 63.9
MS.gene61187.t1 MTR_6g088950 26.590 173 119 3 7 178 5 170 8.90e-11 62.0
MS.gene61187.t1 MTR_4g086835 47.458 59 31 0 190 248 273 331 9.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61187.t1 AT2G25180 59.355 310 117 5 3 309 11 314 1.13e-106 331
MS.gene61187.t1 AT4G31920 51.359 368 141 9 3 356 11 354 4.72e-102 318
MS.gene61187.t1 AT5G58080 47.666 407 147 14 3 387 12 374 4.82e-88 284
MS.gene61187.t1 AT3G16857 50.530 283 104 5 3 258 31 304 4.42e-83 271
MS.gene61187.t1 AT3G16857 49.823 283 106 4 3 258 31 304 1.25e-82 271
MS.gene61187.t1 AT1G67710 52.988 251 103 5 6 248 8 251 6.25e-72 238
MS.gene61187.t1 AT2G01760 47.778 270 133 3 1 263 3 271 5.40e-70 229
MS.gene61187.t1 AT3G16857 49.174 242 87 4 44 258 2 234 2.91e-66 226
MS.gene61187.t1 AT2G01760 43.289 298 133 4 1 263 3 299 6.23e-64 214
MS.gene61187.t1 AT5G49240 41.322 242 129 4 5 240 38 272 2.89e-50 174
MS.gene61187.t1 AT1G67710 51.295 193 79 5 64 248 1 186 5.68e-47 170
MS.gene61187.t1 AT3G62670 38.800 250 136 5 10 254 42 279 1.20e-43 160
MS.gene61187.t1 AT2G01760 45.366 205 104 3 64 261 1 204 3.69e-43 156
MS.gene61187.t1 AT1G49190 30.824 279 168 5 4 268 29 296 4.05e-36 139
MS.gene61187.t1 AT5G07210 29.282 362 201 9 7 326 14 362 2.94e-33 134
MS.gene61187.t1 AT1G67710 46.821 173 77 5 84 248 12 177 3.28e-33 132
MS.gene61187.t1 AT2G27070 30.000 300 150 7 7 260 14 299 2.87e-31 128
MS.gene61187.t1 AT5G07210 28.649 370 201 10 7 326 14 370 8.71e-31 127
MS.gene61187.t1 AT2G46790 39.024 123 70 2 9 127 37 158 5.43e-22 99.0
MS.gene61187.t1 AT2G46790 39.024 123 70 2 9 127 37 158 5.64e-22 99.4
MS.gene61187.t1 AT1G49190 37.600 125 78 0 4 128 29 153 2.83e-21 98.2
MS.gene61187.t1 AT5G59570 45.918 98 51 1 170 265 120 217 1.88e-20 92.4
MS.gene61187.t1 AT5G59570 45.918 98 51 1 170 265 120 217 1.88e-20 92.4
MS.gene61187.t1 AT3G46640 47.778 90 45 1 178 265 129 218 4.34e-20 91.7
MS.gene61187.t1 AT3G46640 47.778 90 45 1 178 265 129 218 4.34e-20 91.7
MS.gene61187.t1 AT3G46640 47.778 90 45 1 178 265 129 218 5.72e-20 91.3
MS.gene61187.t1 AT5G24470 36.719 128 76 2 7 130 48 174 6.85e-20 93.6
MS.gene61187.t1 AT2G40970 50.649 77 38 0 172 248 86 162 3.51e-19 87.4
MS.gene61187.t1 AT3G10760 41.463 123 69 2 157 276 68 190 5.72e-19 88.6
MS.gene61187.t1 AT5G05090 54.286 70 32 0 179 248 69 138 1.57e-18 86.3
MS.gene61187.t1 AT5G60100 37.008 127 76 2 5 127 59 185 2.05e-18 87.8
MS.gene61187.t1 AT5G60100 37.008 127 76 2 5 127 59 185 2.05e-18 87.8
MS.gene61187.t1 AT5G60100 37.008 127 76 2 5 127 59 185 2.05e-18 87.8
MS.gene61187.t1 AT5G60100 37.008 127 76 2 5 127 59 185 2.34e-18 88.6
MS.gene61187.t1 AT5G60100 37.008 127 76 2 5 127 59 185 2.34e-18 88.6
MS.gene61187.t1 AT5G60100 37.008 127 76 2 5 127 59 185 2.34e-18 88.6
MS.gene61187.t1 AT5G60100 37.008 127 76 2 5 127 59 185 5.37e-18 87.4
MS.gene61187.t1 AT5G02810 35.246 122 76 1 9 127 78 199 7.50e-18 87.4
MS.gene61187.t1 AT5G61380 33.065 124 80 1 9 129 19 142 3.23e-17 85.5
MS.gene61187.t1 AT5G44190 56.923 65 28 0 183 247 139 203 9.96e-17 82.4
MS.gene61187.t1 AT5G44190 56.923 65 28 0 183 247 139 203 1.08e-16 82.0
MS.gene61187.t1 AT2G20570 40.367 109 57 2 165 273 130 230 7.48e-15 77.0
MS.gene61187.t1 AT2G20570 46.914 81 38 1 193 273 171 246 7.80e-14 73.9
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.37e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.37e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.37e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.37e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.37e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.37e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene61187.t1 AT4G18020 54.098 61 26 1 187 247 294 352 2.56e-12 69.7
MS.gene61187.t1 AT3G57040 28.395 162 94 2 11 150 11 172 4.27e-12 66.6
MS.gene61187.t1 AT3G57040 28.395 162 94 2 11 150 11 172 4.27e-12 66.6
MS.gene61187.t1 AT1G68670 37.624 101 59 2 174 270 198 298 1.60e-11 66.2
MS.gene61187.t1 AT2G40670 33.083 133 73 2 9 125 29 161 2.64e-11 62.8
MS.gene61187.t1 AT1G59940 30.657 137 83 2 11 135 35 171 3.19e-11 63.9
MS.gene61187.t1 AT1G10470 31.579 133 79 2 11 131 22 154 3.42e-11 63.9
MS.gene61187.t1 AT1G25550 43.038 79 44 1 182 259 200 278 3.54e-11 65.1
MS.gene61187.t1 AT1G10470 31.579 133 79 2 11 131 36 168 3.72e-11 64.3
MS.gene61187.t1 AT3G25790 34.375 128 72 4 195 321 200 316 5.90e-11 64.7
MS.gene61187.t1 AT2G40670 33.333 132 73 2 9 125 29 160 7.57e-11 61.2

Find 113 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATATGTCTCAAGATTT+TGG 0.154586 1.1:-7993798 MS.gene61187:CDS
GGAAGGTAAGAGTTTGTTTC+TGG 0.198817 1.1:+7991182 None:intergenic
AGCTAATATGGCCGAAGATT+TGG 0.235811 1.1:-7991576 MS.gene61187:CDS
TTTAAGCTTCTTGAGCTTAT+TGG 0.242147 1.1:-7993024 MS.gene61187:CDS
ATTCCTTTCATCACCATCTT+TGG 0.253553 1.1:+7992862 None:intergenic
ACTCGACAGGTGATCATCTT+AGG 0.278334 1.1:-7991352 MS.gene61187:CDS
TGATGTCCCACCAGAGAAAT+TGG 0.298503 1.1:+7990631 None:intergenic
AATTTCCATCATGGTTGTTA+TGG 0.300876 1.1:+7991045 None:intergenic
TGTACCTCCTTCAATGTAAC+AGG 0.302320 1.1:+7992808 None:intergenic
CTTGCTGCTGTTAAACAATT+AGG 0.302670 1.1:-7992526 MS.gene61187:CDS
ATGAATGATCAATTTCCTAT+TGG 0.313965 1.1:-7993848 MS.gene61187:CDS
CCATTTCCACTATCAGAATT+AGG 0.318838 1.1:+7992724 None:intergenic
CCTAATTCTGATAGTGGAAA+TGG 0.330629 1.1:-7992724 MS.gene61187:CDS
GCTAATATGGCCGAAGATTT+GGG 0.348373 1.1:-7991575 MS.gene61187:CDS
CATGTGGTTGGTAGTTCAAT+AGG 0.353197 1.1:-7991011 MS.gene61187:CDS
GCATGGACAAAACCTTCTTT+TGG 0.354006 1.1:+7991161 None:intergenic
TGAAGGAGGTACAAATGATT+TGG 0.363320 1.1:-7992798 MS.gene61187:CDS
TCTAATAATGTGCCATTTCA+AGG 0.366783 1.1:-7991080 MS.gene61187:CDS
TTCACAACATGAATCATAGA+AGG 0.379234 1.1:+7990987 None:intergenic
TAGCCACATTCTCCCTTGTA+AGG 0.388290 1.1:+7992068 None:intergenic
GATATAACCCATTCTTGAAT+AGG 0.403697 1.1:+7991535 None:intergenic
AAAGAAGGTGCAATGACATT+TGG 0.412055 1.1:-7991226 MS.gene61187:CDS
CAATTATATGCCAATTTCTC+TGG 0.412361 1.1:-7990641 MS.gene61187:CDS
CTACTACTCATACCACTAGA+TGG 0.416526 1.1:+7991434 None:intergenic
AGAAGAAGCCTCGAGTTGTT+TGG 0.418038 1.1:-7992573 MS.gene61187:CDS
TACCATGGTATTGACACCTT+TGG 0.419217 1.1:+7993765 None:intergenic
TTATTATTATGAAACTGTCT+AGG 0.422621 1.1:+7991476 None:intergenic
TATGAACATTGCTGATTACT+AGG 0.423694 1.1:+7993064 None:intergenic
TTATTATCCCATCCTTGAAA+TGG 0.424148 1.1:+7991068 None:intergenic
AGCTTAAACCCATCCATGTC+TGG 0.428879 1.1:+7993039 None:intergenic
AACTCTTACCTTCCAAAAGA+AGG 0.429300 1.1:-7991173 MS.gene61187:CDS
GTTTCTGGTAATTGCAGCAT+AGG 0.430843 1.1:+7991197 None:intergenic
TGATAGATCCTATTCAAGAA+TGG 0.441988 1.1:-7991543 MS.gene61187:CDS
GATAGATCCTATTCAAGAAT+GGG 0.444292 1.1:-7991542 MS.gene61187:CDS
TTCAGATCCTTTCCATCTAG+TGG 0.445066 1.1:-7991446 MS.gene61187:CDS
GCAAGAACACGCATTCCAAT+AGG 0.451965 1.1:+7993833 None:intergenic
TCTTTGAACATCATTCAGAT+TGG 0.469109 1.1:+7991307 None:intergenic
ATGAATAATCAGATGAAGGC+TGG 0.470466 1.1:-7990873 MS.gene61187:CDS
ATGGGTTATATCAGTGGAGT+TGG 0.473556 1.1:-7991524 MS.gene61187:CDS
GGGAAACATTCGGCTGGGAC+AGG 0.477461 1.1:-7992703 MS.gene61187:CDS
GCTGAAACCTGTTACATTGA+AGG 0.477526 1.1:-7992815 MS.gene61187:CDS
CTAATTCTGATAGTGGAAAT+GGG 0.482228 1.1:-7992723 MS.gene61187:CDS
TGAGCTTATTGGACTTGAGA+TGG 0.484301 1.1:-7993013 MS.gene61187:CDS
TTTCTGGTAATTGCAGCATA+GGG 0.484334 1.1:+7991198 None:intergenic
AGAATCATTACCCAAATCTT+CGG 0.485778 1.1:+7991565 None:intergenic
TGTGAGTTCATGTTATATGT+AGG 0.486197 1.1:+7991125 None:intergenic
GAATGCTATTGAAGGAAACT+TGG 0.492011 1.1:-7990967 MS.gene61187:CDS
TGATTTGGCAACATGTAGTC+AGG 0.492304 1.1:-7992783 MS.gene61187:CDS
TGATCATCTTAGGTTTCAAT+CGG 0.494786 1.1:-7991342 MS.gene61187:CDS
CATGTTGTGAATGCTATTGA+AGG 0.494924 1.1:-7990975 MS.gene61187:CDS
GATGCGCCTAATTCTGATAG+TGG 0.498616 1.1:-7992730 MS.gene61187:CDS
TGAGAGTCTACAGAAGGAAA+TGG 0.499941 1.1:+7991281 None:intergenic
GCCAGTAGTGTTAATCTGCA+TGG 0.509822 1.1:-7991398 MS.gene61187:CDS
TAGTGGAAATGGGAAACATT+CGG 0.510168 1.1:-7992713 MS.gene61187:CDS
GGTTATATCAGTGGAGTTGG+TGG 0.511432 1.1:-7991521 MS.gene61187:CDS
GGAAATGGGAAACATTCGGC+TGG 0.517134 1.1:-7992709 MS.gene61187:CDS
TACCATCCTTCTCATGTGGT+TGG 0.521062 1.1:-7991023 MS.gene61187:CDS
GAAGAACGAAGATGATGATG+AGG 0.524981 1.1:-7992638 MS.gene61187:CDS
TTGCATAACTTACTTATGAC+AGG 0.526242 1.1:+7992985 None:intergenic
TCCATGCAGATTAACACTAC+TGG 0.528713 1.1:+7991397 None:intergenic
AAGGATGGTAATTTCCATCA+TGG 0.529123 1.1:+7991036 None:intergenic
AATAACCATAACAACCATGA+TGG 0.531658 1.1:-7991050 MS.gene61187:CDS
ATTCAGATTGGCGCGAGCTA+TGG 0.531857 1.1:+7991319 None:intergenic
TATTATTATGAAACTGTCTA+GGG 0.535599 1.1:+7991477 None:intergenic
TTCATATGCCAGACATGGAT+GGG 0.536690 1.1:-7993047 MS.gene61187:CDS
TATGATGAATAATCAGATGA+AGG 0.541034 1.1:-7990877 MS.gene61187:CDS
GAATGTGGCTAGCCATCTCC+AGG 0.545926 1.1:-7992056 MS.gene61187:intron
GTTCATATGCCAGACATGGA+TGG 0.546140 1.1:-7993048 MS.gene61187:CDS
ACCTCATGTGGTTTCAATGA+CGG 0.547065 1.1:+7990903 None:intergenic
TAATGTGCCATTTCAAGGAT+GGG 0.550140 1.1:-7991075 MS.gene61187:CDS
TTATATGCCAATTTCTCTGG+TGG 0.550617 1.1:-7990638 MS.gene61187:CDS
GAGTTGTTCAAATTATGTGC+AGG 0.552747 1.1:+7991371 None:intergenic
CATAATTTGAACAACTCGAC+AGG 0.552801 1.1:-7991365 MS.gene61187:CDS
TGGATGATGAAAACCTTACA+AGG 0.553288 1.1:-7992081 MS.gene61187:CDS
CAATGTTCATATGCCAGACA+TGG 0.556391 1.1:-7993052 MS.gene61187:CDS
ATAATGTGCCATTTCAAGGA+TGG 0.556574 1.1:-7991076 MS.gene61187:CDS
GGAAGAAGAAAACTAGCAAA+CGG 0.556828 1.1:-7992762 MS.gene61187:CDS
TTCATCATATATACCTCATG+TGG 0.558721 1.1:+7990891 None:intergenic
TGATGATGAGGATGAGAATG+AGG 0.567738 1.1:-7992626 MS.gene61187:CDS
CATGAGAGTCATGATCAAAC+CGG 0.571164 1.1:-7990808 MS.gene61187:intron
TATATGCCAATTTCTCTGGT+GGG 0.573019 1.1:-7990637 MS.gene61187:CDS
GAGTTCATGTTATATGTAGG+AGG 0.588472 1.1:+7991128 None:intergenic
ACTCATACCACTAGATGGAA+AGG 0.588967 1.1:+7991439 None:intergenic
GAACTACCAACCACATGAGA+AGG 0.589560 1.1:+7991017 None:intergenic
TGTTAGTGCACTTTGAGCAG+TGG 0.591132 1.1:+7993125 None:intergenic
AAACCTTACAAGGGAGAATG+TGG 0.595886 1.1:-7992071 MS.gene61187:CDS
TCAAGAATGGGTTATATCAG+TGG 0.601175 1.1:-7991530 MS.gene61187:CDS
TGCAGATTAACACTACTGGC+AGG 0.606997 1.1:+7991401 None:intergenic
GTGATGAAAGGAATTGATCA+TGG 0.607173 1.1:-7992853 MS.gene61187:CDS
CAATTATTGTGATCGTATCG+CGG 0.612466 1.1:-7990940 MS.gene61187:CDS
TGCGAATGATGATCCAAAGA+TGG 0.615837 1.1:-7992875 MS.gene61187:CDS
TGCATATTCTAATCTTGCCG+CGG 0.619450 1.1:+7990605 None:intergenic
GAAATGGGAAACATTCGGCT+GGG 0.620073 1.1:-7992708 MS.gene61187:CDS
TAGGAGGCATAGCAGCAGCA+TGG 0.623883 1.1:+7991144 None:intergenic
ACATATTCTATCATCATCGA+CGG 0.628249 1.1:+7993811 None:intergenic
GAATGTTGAGAGTCTACAGA+AGG 0.629708 1.1:+7991275 None:intergenic
AAATTACCATCCTTCTCATG+TGG 0.631597 1.1:-7991027 MS.gene61187:CDS
GAAGCCTCGAGTTGTTTGGT+CGG 0.632069 1.1:-7992569 MS.gene61187:CDS
GATCCAAAGATGGTGATGAA+AGG 0.637771 1.1:-7992865 MS.gene61187:CDS
TCACAACATGAATCATAGAA+GGG 0.643072 1.1:+7990988 None:intergenic
TACCAACCACATGAGAAGGA+TGG 0.647791 1.1:+7991021 None:intergenic
CTCCAAAGGTGTCAATACCA+TGG 0.650196 1.1:-7993767 MS.gene61187:intron
AATCAAGCTCATTAGACATG+TGG 0.650925 1.1:+7990844 None:intergenic
TAACAGCAGCAAGAAACTTG+CGG 0.653136 1.1:+7992536 None:intergenic
TAATGAGCTTGATTCGCTCG+AGG 0.661321 1.1:-7990835 MS.gene61187:CDS
TCGTGACAATGATGATTCGA+CGG 0.663799 1.1:-7992599 MS.gene61187:CDS
ACATATAACATGAACTCACA+AGG 0.670292 1.1:-7991122 MS.gene61187:CDS
CTGGTGGGACATCAATGCCG+CGG 0.675642 1.1:-7990622 MS.gene61187:CDS
GGATGATGAAAACCTTACAA+GGG 0.676423 1.1:-7992080 MS.gene61187:CDS
GAAACCTGTTACATTGAAGG+AGG 0.684192 1.1:-7992812 MS.gene61187:CDS
TCAGCCGACCAAACAACTCG+AGG 0.687224 1.1:+7992565 None:intergenic
AACTGTCTAGGGTCATTCAG+TGG 0.690957 1.1:+7991488 None:intergenic
TCCGTCATTGAAACCACATG+AGG 0.701079 1.1:-7990904 MS.gene61187:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAGAAATCTAATCAT+TGG + chr1.1:7991235-7991254 None:intergenic 15.0%
!! AATATAAGATCACAAAATAT+TGG + chr1.1:7991136-7991155 None:intergenic 15.0%
!! ATTTAAGGAAAATACTTATA+TGG + chr1.1:7992720-7992739 None:intergenic 15.0%
!! TAAATTAAATGTAATCACAT+CGG - chr1.1:7992735-7992754 MS.gene61187:CDS 15.0%
!!! AGTTTATAAGCATTTTATTT+AGG - chr1.1:7992803-7992822 MS.gene61187:CDS 15.0%
!!! ATGTGATTACATTTAATTTA+AGG + chr1.1:7992735-7992754 None:intergenic 15.0%
!!! ATTTTTCATAATTTTTGTTG+TGG - chr1.1:7991297-7991316 MS.gene61187:CDS 15.0%
!!! TGTGATCTTATATTATTTTT+TGG - chr1.1:7991142-7991161 MS.gene61187:CDS 15.0%
!!! TTTTGTTCTTTTGATTTTTT+TGG - chr1.1:7990757-7990776 MS.gene61187:intron 15.0%
!! CATGCATAGAAAATTATTTA+GGG - chr1.1:7991529-7991548 MS.gene61187:CDS 20.0%
!! GATTCATAAAAATTCAACAT+TGG + chr1.1:7990970-7990989 None:intergenic 20.0%
!! TATAAGATAAGAAAAATACC+TGG + chr1.1:7992426-7992445 None:intergenic 20.0%
!! TATTATTATGAAACTGTCTA+GGG + chr1.1:7992987-7993006 None:intergenic 20.0%
!! TTATTATTATGAAACTGTCT+AGG + chr1.1:7992988-7993007 None:intergenic 20.0%
!!! AATCTCTAAAAGAATAAGAT+CGG + chr1.1:7991064-7991083 None:intergenic 20.0%
!!! AATTTTCTTTGATACTGTTT+AGG - chr1.1:7991006-7991025 MS.gene61187:CDS 20.0%
!!! ATTTCATAGATTTTATGATG+TGG - chr1.1:7991264-7991283 MS.gene61187:CDS 20.0%
!!! CATTGCATAAATTTTATTAC+CGG + chr1.1:7993675-7993694 None:intergenic 20.0%
! AATAAGATCGGTCAAAATAT+AGG + chr1.1:7991052-7991071 None:intergenic 25.0%
! ACTCGAATATCTTGATTAAA+TGG + chr1.1:7992053-7992072 None:intergenic 25.0%
! ATCCTTTACTTGAAAAAAGA+AGG - chr1.1:7993220-7993239 MS.gene61187:intron 25.0%
! ATGAATGATCAATTTCCTAT+TGG - chr1.1:7990613-7990632 MS.gene61187:CDS 25.0%
! CAAAAAAAACAAACATACCA+TGG + chr1.1:7990714-7990733 None:intergenic 25.0%
! CCATGCATAGAAAATTATTT+AGG - chr1.1:7991528-7991547 MS.gene61187:CDS 25.0%
! CTCGAATATCTTGATTAAAT+GGG + chr1.1:7992052-7992071 None:intergenic 25.0%
! GTTTAATAATCTTCATAGCA+TGG + chr1.1:7992167-7992186 None:intergenic 25.0%
! TATAGAAAAACTTCATAGCA+TGG + chr1.1:7992289-7992308 None:intergenic 25.0%
! TATGATGAATAATCAGATGA+AGG - chr1.1:7993584-7993603 MS.gene61187:intron 25.0%
! TCTGAAAAAACAAGCTAATA+TGG - chr1.1:7992873-7992892 MS.gene61187:CDS 25.0%
! TTAAATGGGAACAAATAAAG+AGG + chr1.1:7992038-7992057 None:intergenic 25.0%
! TTTAATCAAGATATTCGAGT+AGG - chr1.1:7992053-7992072 MS.gene61187:intron 25.0%
! TTTAATTGCATCCAAATTGT+TGG - chr1.1:7991175-7991194 MS.gene61187:CDS 25.0%
!! AAAAAAGATTCTTGACTTGA+TGG - chr1.1:7992360-7992379 MS.gene61187:intron 25.0%
!! CCTAAATAATTTTCTATGCA+TGG + chr1.1:7991531-7991550 None:intergenic 25.0%
!! TAGAATATGTCTCAAGATTT+TGG - chr1.1:7990663-7990682 MS.gene61187:intron 25.0%
!!! ATCAAGTCAAGAATCTTTTT+TGG + chr1.1:7992361-7992380 None:intergenic 25.0%
AAAGCCATCTAGAAAAAGAA+AGG - chr1.1:7991799-7991818 MS.gene61187:intron 30.0%
AATAACCATAACAACCATGA+TGG - chr1.1:7993411-7993430 MS.gene61187:intron 30.0%
AATTTCCATCATGGTTGTTA+TGG + chr1.1:7993419-7993438 None:intergenic 30.0%
ACATATAACATGAACTCACA+AGG - chr1.1:7993339-7993358 MS.gene61187:intron 30.0%
ACATATTCTATCATCATCGA+CGG + chr1.1:7990653-7990672 None:intergenic 30.0%
ACGCTCACATATTTCAAAAA+AGG - chr1.1:7992594-7992613 MS.gene61187:CDS 30.0%
AGAATCATTACCCAAATCTT+CGG + chr1.1:7992899-7992918 None:intergenic 30.0%
ATAAGAAAAATACCTGGAGA+TGG + chr1.1:7992420-7992439 None:intergenic 30.0%
ATCTAGTGAATCCAACAATT+TGG + chr1.1:7991189-7991208 None:intergenic 30.0%
CAATTATATGCCAATTTCTC+TGG - chr1.1:7993820-7993839 MS.gene61187:CDS 30.0%
CAGAAAGCAATATAGACAAA+TGG + chr1.1:7993775-7993794 None:intergenic 30.0%
GATAGATCCTATTCAAGAAT+GGG - chr1.1:7992919-7992938 MS.gene61187:intron 30.0%
GATATAACCCATTCTTGAAT+AGG + chr1.1:7992929-7992948 None:intergenic 30.0%
GGATCATAAGTTAAATGCAT+CGG + chr1.1:7993754-7993773 None:intergenic 30.0%
TCACAACATGAATCATAGAA+GGG + chr1.1:7993476-7993495 None:intergenic 30.0%
TCATTCAAATTACATTGCCT+AGG + chr1.1:7990783-7990802 None:intergenic 30.0%
TCTTTGAACATCATTCAGAT+TGG + chr1.1:7993157-7993176 None:intergenic 30.0%
TGATAGATCCTATTCAAGAA+TGG - chr1.1:7992918-7992937 MS.gene61187:intron 30.0%
TGATCATCTTAGGTTTCAAT+CGG - chr1.1:7993119-7993138 MS.gene61187:CDS 30.0%
TGTGAGTTCATGTTATATGT+AGG + chr1.1:7993339-7993358 None:intergenic 30.0%
TTAAACGTTGATATTCGAGT+AGG - chr1.1:7992197-7992216 MS.gene61187:intron 30.0%
TTAGATGATCACAACCATTT+CGG - chr1.1:7992557-7992576 MS.gene61187:CDS 30.0%
TTATTATCCCATCCTTGAAA+TGG + chr1.1:7993396-7993415 None:intergenic 30.0%
TTCACAACATGAATCATAGA+AGG + chr1.1:7993477-7993496 None:intergenic 30.0%
TTCATCATATATACCTCATG+TGG + chr1.1:7993573-7993592 None:intergenic 30.0%
TTGCATAACTTACTTATGAC+AGG + chr1.1:7991479-7991498 None:intergenic 30.0%
TTTAAGCTTCTTGAGCTTAT+TGG - chr1.1:7991437-7991456 MS.gene61187:CDS 30.0%
TTTAGAGATTGCACATGATT+TGG - chr1.1:7991074-7991093 MS.gene61187:CDS 30.0%
! ATGATTTGAGCACATCATTT+TGG + chr1.1:7992692-7992711 None:intergenic 30.0%
! TATGAACATTGCTGATTACT+AGG + chr1.1:7991400-7991419 None:intergenic 30.0%
! TTCTCCTTTCTTTTTCTAGA+TGG + chr1.1:7991806-7991825 None:intergenic 30.0%
!! CTAATTCTGATAGTGGAAAT+GGG - chr1.1:7991738-7991757 MS.gene61187:intron 30.0%
!! TCTAATAATGTGCCATTTCA+AGG - chr1.1:7993381-7993400 MS.gene61187:intron 30.0%
!!! CACCTTCTTTTTTCAAGTAA+AGG + chr1.1:7993225-7993244 None:intergenic 30.0%
!!! TCTTTTGATTTTTTTGGCCT+AGG - chr1.1:7990763-7990782 MS.gene61187:intron 30.0%
AAATTACCATCCTTCTCATG+TGG - chr1.1:7993434-7993453 MS.gene61187:intron 35.0%
AACCATTTCGGCATAAAATC+TGG - chr1.1:7992569-7992588 MS.gene61187:CDS 35.0%
AACTCTTACCTTCCAAAAGA+AGG - chr1.1:7993288-7993307 MS.gene61187:intron 35.0%
AAGGATGGTAATTTCCATCA+TGG + chr1.1:7993428-7993447 None:intergenic 35.0%
AATCAAGCTCATTAGACATG+TGG + chr1.1:7993620-7993639 None:intergenic 35.0%
ACCATTTCGGCATAAAATCT+GGG - chr1.1:7992570-7992589 MS.gene61187:CDS 35.0%
ATGAATAATCAGATGAAGGC+TGG - chr1.1:7993588-7993607 MS.gene61187:intron 35.0%
ATTCCTTTCATCACCATCTT+TGG + chr1.1:7991602-7991621 None:intergenic 35.0%
CAATTATTGTGATCGTATCG+CGG - chr1.1:7993521-7993540 MS.gene61187:intron 35.0%
CATAATTTGAACAACTCGAC+AGG - chr1.1:7993096-7993115 MS.gene61187:CDS 35.0%
CATGTTGTGAATGCTATTGA+AGG - chr1.1:7993486-7993505 MS.gene61187:intron 35.0%
CCATTTCCACTATCAGAATT+AGG + chr1.1:7991740-7991759 None:intergenic 35.0%
CTTGCTGCTGTTAAACAATT+AGG - chr1.1:7991935-7991954 MS.gene61187:intron 35.0%
GAATGCTATTGAAGGAAACT+TGG - chr1.1:7993494-7993513 MS.gene61187:intron 35.0%
GAGTTCATGTTATATGTAGG+AGG + chr1.1:7993336-7993355 None:intergenic 35.0%
GAGTTGTTCAAATTATGTGC+AGG + chr1.1:7993093-7993112 None:intergenic 35.0%
GGAAGAAGAAAACTAGCAAA+CGG - chr1.1:7991699-7991718 MS.gene61187:intron 35.0%
GGATGATGAAAACCTTACAA+GGG - chr1.1:7992381-7992400 MS.gene61187:intron 35.0%
GTCATGTTTGGTATCTTTGT+CGG + chr1.1:7992478-7992497 None:intergenic 35.0%
GTGATGAAAGGAATTGATCA+TGG - chr1.1:7991608-7991627 MS.gene61187:intron 35.0%
TAGTGGAAATGGGAAACATT+CGG - chr1.1:7991748-7991767 MS.gene61187:intron 35.0%
TATATGCCAATTTCTCTGGT+GGG - chr1.1:7993824-7993843 MS.gene61187:CDS 35.0%
TGATGTGTTAGTGTCATGTT+TGG + chr1.1:7992490-7992509 None:intergenic 35.0%
TGGATGATGAAAACCTTACA+AGG - chr1.1:7992380-7992399 MS.gene61187:intron 35.0%
TTATATGCCAATTTCTCTGG+TGG - chr1.1:7993823-7993842 MS.gene61187:CDS 35.0%
! AAACGTTGAGATTAGTCCTA+GGG - chr1.1:7992120-7992139 MS.gene61187:intron 35.0%
! AAAGAAGGTGCAATGACATT+TGG - chr1.1:7993235-7993254 MS.gene61187:intron 35.0%
! TAAACGTTGAGATTAGTCCT+AGG - chr1.1:7992119-7992138 MS.gene61187:intron 35.0%
! TGAAGGAGGTACAAATGATT+TGG - chr1.1:7991663-7991682 MS.gene61187:intron 35.0%
! TTTCTGGTAATTGCAGCATA+GGG + chr1.1:7993266-7993285 None:intergenic 35.0%
!! ATAATGTGCCATTTCAAGGA+TGG - chr1.1:7993385-7993404 MS.gene61187:intron 35.0%
!! CCTAATTCTGATAGTGGAAA+TGG - chr1.1:7991737-7991756 MS.gene61187:intron 35.0%
!! TAATGTGCCATTTCAAGGAT+GGG - chr1.1:7993386-7993405 MS.gene61187:intron 35.0%
!! TCAAGAATGGGTTATATCAG+TGG - chr1.1:7992931-7992950 MS.gene61187:intron 35.0%
!!! AGTTGTTATTTTGCTTGCAG+AGG - chr1.1:7992330-7992349 MS.gene61187:intron 35.0%
AAACCTTACAAGGGAGAATG+TGG - chr1.1:7992390-7992409 MS.gene61187:intron 40.0%
ACCTCATGTGGTTTCAATGA+CGG + chr1.1:7993561-7993580 None:intergenic 40.0%
ACTCATACCACTAGATGGAA+AGG + chr1.1:7993025-7993044 None:intergenic 40.0%
AGCTAATATGGCCGAAGATT+TGG - chr1.1:7992885-7992904 MS.gene61187:CDS 40.0%
CAATGTTCATATGCCAGACA+TGG - chr1.1:7991409-7991428 MS.gene61187:CDS 40.0%
CATGAGAGTCATGATCAAAC+CGG - chr1.1:7993653-7993672 MS.gene61187:intron 40.0%
CTACTACTCATACCACTAGA+TGG + chr1.1:7993030-7993049 None:intergenic 40.0%
GAAACCTGTTACATTGAAGG+AGG - chr1.1:7991649-7991668 MS.gene61187:intron 40.0%
GAATGTTGAGAGTCTACAGA+AGG + chr1.1:7993189-7993208 None:intergenic 40.0%
GCTAATATGGCCGAAGATTT+GGG - chr1.1:7992886-7992905 MS.gene61187:intron 40.0%
GCTGAAACCTGTTACATTGA+AGG - chr1.1:7991646-7991665 MS.gene61187:intron 40.0%
TAACAGCAGCAAGAAACTTG+CGG + chr1.1:7991928-7991947 None:intergenic 40.0%
TCCATGCAGATTAACACTAC+TGG + chr1.1:7993067-7993086 None:intergenic 40.0%
TCGTGACAATGATGATTCGA+CGG - chr1.1:7991862-7991881 MS.gene61187:intron 40.0%
TGAGAGTCTACAGAAGGAAA+TGG + chr1.1:7993183-7993202 None:intergenic 40.0%
TGAGCTTATTGGACTTGAGA+TGG - chr1.1:7991448-7991467 MS.gene61187:CDS 40.0%
TGCGAATGATGATCCAAAGA+TGG - chr1.1:7991586-7991605 MS.gene61187:CDS 40.0%
TGTACCTCCTTCAATGTAAC+AGG + chr1.1:7991656-7991675 None:intergenic 40.0%
TTCAGATCCTTTCCATCTAG+TGG - chr1.1:7993015-7993034 MS.gene61187:CDS 40.0%
TTCATATGCCAGACATGGAT+GGG - chr1.1:7991414-7991433 MS.gene61187:CDS 40.0%
! AACGTTGAGATTAGTCCTAG+GGG - chr1.1:7992121-7992140 MS.gene61187:intron 40.0%
! ATGGGTTATATCAGTGGAGT+TGG - chr1.1:7992937-7992956 MS.gene61187:intron 40.0%
! GAAGAACGAAGATGATGATG+AGG - chr1.1:7991823-7991842 MS.gene61187:intron 40.0%
! GATCCAAAGATGGTGATGAA+AGG - chr1.1:7991596-7991615 MS.gene61187:CDS 40.0%
! GCATGGACAAAACCTTCTTT+TGG + chr1.1:7993303-7993322 None:intergenic 40.0%
! GGAAGGTAAGAGTTTGTTTC+TGG + chr1.1:7993282-7993301 None:intergenic 40.0%
! GGACAAAACCTTCTTTTGGA+AGG + chr1.1:7993299-7993318 None:intergenic 40.0%
! TGATGATGAGGATGAGAATG+AGG - chr1.1:7991835-7991854 MS.gene61187:intron 40.0%
! TGATTTGGCAACATGTAGTC+AGG - chr1.1:7991678-7991697 MS.gene61187:intron 40.0%
! TTTTGCGCATTGAAGATCGA+GGG + chr1.1:7991979-7991998 None:intergenic 40.0%
! TTTTTGCGCATTGAAGATCG+AGG + chr1.1:7991980-7991999 None:intergenic 40.0%
!! CATGTGGTTGGTAGTTCAAT+AGG - chr1.1:7993450-7993469 MS.gene61187:intron 40.0%
!! GTTTCTGGTAATTGCAGCAT+AGG + chr1.1:7993267-7993286 None:intergenic 40.0%
!! TACCATGGTATTGACACCTT+TGG + chr1.1:7990699-7990718 None:intergenic 40.0%
!! TTTTGGAGAGACTTCTCCAA+AGG - chr1.1:7990680-7990699 MS.gene61187:intron 40.0%
ACTCGACAGGTGATCATCTT+AGG - chr1.1:7993109-7993128 MS.gene61187:CDS 45.0%
AGCTTAAACCCATCCATGTC+TGG + chr1.1:7991425-7991444 None:intergenic 45.0%
ATTAGTCCTAGGGGTGAATG+TGG - chr1.1:7992130-7992149 MS.gene61187:intron 45.0%
GAAATGGGAAACATTCGGCT+GGG - chr1.1:7991753-7991772 MS.gene61187:intron 45.0%
GAACTACCAACCACATGAGA+AGG + chr1.1:7993447-7993466 None:intergenic 45.0%
GATGCGCCTAATTCTGATAG+TGG - chr1.1:7991731-7991750 MS.gene61187:intron 45.0%
GCAAGAACACGCATTCCAAT+AGG + chr1.1:7990631-7990650 None:intergenic 45.0%
GCACGTACACTTCAGATTGA+AGG + chr1.1:7992778-7992797 None:intergenic 45.0%
GCCAGTAGTGTTAATCTGCA+TGG - chr1.1:7993063-7993082 MS.gene61187:CDS 45.0%
GGTTATATCAGTGGAGTTGG+TGG - chr1.1:7992940-7992959 MS.gene61187:intron 45.0%
GTTCATATGCCAGACATGGA+TGG - chr1.1:7991413-7991432 MS.gene61187:CDS 45.0%
TACCAACCACATGAGAAGGA+TGG + chr1.1:7993443-7993462 None:intergenic 45.0%
TACCATCCTTCTCATGTGGT+TGG - chr1.1:7993438-7993457 MS.gene61187:intron 45.0%
TAGCCACATTCTCCCTTGTA+AGG + chr1.1:7992396-7992415 None:intergenic 45.0%
TCCGTCATTGAAACCACATG+AGG - chr1.1:7993557-7993576 MS.gene61187:intron 45.0%
TGATGTCCCACCAGAGAAAT+TGG + chr1.1:7993833-7993852 None:intergenic 45.0%
TGCAGATTAACACTACTGGC+AGG + chr1.1:7993063-7993082 None:intergenic 45.0%
TGTTAGTGCACTTTGAGCAG+TGG + chr1.1:7991339-7991358 None:intergenic 45.0%
! AACTGTCTAGGGTCATTCAG+TGG + chr1.1:7992976-7992995 None:intergenic 45.0%
! AGAAGAAGCCTCGAGTTGTT+TGG - chr1.1:7991888-7991907 MS.gene61187:intron 45.0%
! GCCCAGATTTTATGCCGAAA+TGG + chr1.1:7992574-7992593 None:intergenic 45.0%
! TAATGAGCTTGATTCGCTCG+AGG - chr1.1:7993626-7993645 MS.gene61187:intron 45.0%
!! CTCCAAAGGTGTCAATACCA+TGG - chr1.1:7990694-7990713 MS.gene61187:intron 45.0%
!!! TTTTTTGAAATATTTAAAAT+AGG - chr1.1:7990727-7990746 MS.gene61187:intron 5.0%
ACATAGCCACATTCACCCCT+AGG + chr1.1:7992139-7992158 None:intergenic 50.0%
ATTCAGATTGGCGCGAGCTA+TGG + chr1.1:7993145-7993164 None:intergenic 50.0%
GGAAATGGGAAACATTCGGC+TGG - chr1.1:7991752-7991771 MS.gene61187:intron 50.0%
! GAAGCCTCGAGTTGTTTGGT+CGG - chr1.1:7991892-7991911 MS.gene61187:intron 50.0%
TCAGCCGACCAAACAACTCG+AGG + chr1.1:7991899-7991918 None:intergenic 55.0%
! GAATGTGGCTAGCCATCTCC+AGG - chr1.1:7992405-7992424 MS.gene61187:intron 55.0%
! TAGGAGGCATAGCAGCAGCA+TGG + chr1.1:7993320-7993339 None:intergenic 55.0%
CTGGTGGGACATCAATGCCG+CGG - chr1.1:7993839-7993858 MS.gene61187:CDS 60.0%
GGGAAACATTCGGCTGGGAC+AGG - chr1.1:7991758-7991777 MS.gene61187:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7990613 7993870 7990613 ID=MS.gene61187
chr1.1 mRNA 7990613 7993870 7990613 ID=MS.gene61187.t1;Parent=MS.gene61187
chr1.1 exon 7993768 7993870 7993768 ID=MS.gene61187.t1.exon1;Parent=MS.gene61187.t1
chr1.1 CDS 7993768 7993870 7993768 ID=cds.MS.gene61187.t1;Parent=MS.gene61187.t1
chr1.1 exon 7992998 7993150 7992998 ID=MS.gene61187.t1.exon2;Parent=MS.gene61187.t1
chr1.1 CDS 7992998 7993150 7992998 ID=cds.MS.gene61187.t1;Parent=MS.gene61187.t1
chr1.1 exon 7992518 7992904 7992518 ID=MS.gene61187.t1.exon3;Parent=MS.gene61187.t1
chr1.1 CDS 7992518 7992904 7992518 ID=cds.MS.gene61187.t1;Parent=MS.gene61187.t1
chr1.1 exon 7992057 7992133 7992057 ID=MS.gene61187.t1.exon4;Parent=MS.gene61187.t1
chr1.1 CDS 7992057 7992133 7992057 ID=cds.MS.gene61187.t1;Parent=MS.gene61187.t1
chr1.1 exon 7990809 7991624 7990809 ID=MS.gene61187.t1.exon5;Parent=MS.gene61187.t1
chr1.1 CDS 7990809 7991624 7990809 ID=cds.MS.gene61187.t1;Parent=MS.gene61187.t1
chr1.1 exon 7990613 7990666 7990613 ID=MS.gene61187.t1.exon6;Parent=MS.gene61187.t1
chr1.1 CDS 7990613 7990666 7990613 ID=cds.MS.gene61187.t1;Parent=MS.gene61187.t1
Gene Sequence

>MS.gene61187

ATGAATGATCAATTTCCTATTGGAATGCGTGTTCTTGCCGTCGATGATGATAGAATATGTCTCAAGATTTTGGAGAGACTTCTCCAAAGGTGTCAATACCATGGTATGTTTGTTTTTTTTGAAATATTTAAAATAGGTTTTTGTTTTTGTTCTTTTGATTTTTTTGGCCTAGGCAATGTAATTTGAATGATAACATTAACAGTTACTTTTTTTGTAAACTTGAATTTGTCAAATTGATTGAGTTTTTTTTTGTTTATTTTGTTTTTTGTTGTGACAAATTATCTATTTTGACAAATATGTGCATTTATGTATGTGTTAGATTATAGATTATAGATTATCATCAGTGAAGTTGAGCCAATGTTGAATTTTTATGAATCAAATAGATTAGTTTTAAATTTTCTTTGATACTGTTTAGGCTCAACTAAGTTATTTTTGACCTATATTTTGACCGATCTTATTCTTTTAGAGATTGCACATGATTTGGTTTTTAAAGTTCTAAATTTTTAAAAAATTCTTGTGTCCAATATTTTGTGATCTTATATTATTTTTTGGATTTCAAAAATTTAATTGCATCCAAATTGTTGGATTCACTAGATGCAGATTGTCATGCAATTCTTGTCCAATGATTAGATTTCTTATTTTTTAATTAACATTTCATAGATTTTATGATGTGGTTGTATCTGAATTTTTCATAATTTTTGTTGTGGTTATTTGTTGCAGTAACCACTGCTCAAAGTGCACTAACAGCACTGAACTTGTTGAGAGAAAATAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGGTTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAAGTAAGTTATGCAATTCTTCAATCTTATGTTATTGTTATTGATCCATGCATAGAAAATTATTTAGGGTTTTGATAAAAAACTGTTTGATTTCAGTGTTTTCTGCGAATGATGATCCAAAGATGGTGATGAAAGGAATTGATCATGGTGCTTGTGATTATCTGCTGAAACCTGTTACATTGAAGGAGGTACAAATGATTTGGCAACATGTAGTCAGGAAGAAGAAAACTAGCAAACGGAGCAATCTTGATGCGCCTAATTCTGATAGTGGAAATGGGAAACATTCGGCTGGGACAGGCAATTCTGATCAAATTGAAAAGCCATCTAGAAAAAGAAAGGAGAAGAACGAAGATGATGATGAGGATGAGAATGAGGATGATCGTGACAATGATGATTCGACGGCACAGAAGAAGCCTCGAGTTGTTTGGTCGGCTGACTTACACCGCAAGTTTCTTGCTGCTGTTAAACAATTAGGCTTTGAAAGTATGTTGTTCCCTCGATCTTCAATGCGCAAAAACAGTTGTCATCATAACTTTTATCAATTGCTATATTCCTCTTTATTTGTTCCCATTTAATCAAGATATTCGAGTAGGTTTGTTCCCATTTAATCAAGATATTCGAGTAGGTTATAGAAATTAAACGTTGAGATTAGTCCTAGGGGTGAATGTGGCTATGTTTTAGCCATGCTATGAAGATTATTAAACGTTGAGATTATTAAACGTTGATATTCGAGTAGGTTATAGAAATTAAACGTTGAAATTAAACGTCAAGATTATTAATCAAGATCATTACTTATGTTTTAGCCATGCTATGAAGTTTTTCTATACATAACTGTGTTTCTGATTATAGTTGTTATTTTGCTTGCAGAGGCTGTGCCAAAAAAGATTCTTGACTTGATGGATGATGAAAACCTTACAAGGGAGAATGTGGCTAGCCATCTCCAGGTATTTTTCTTATCTTATATTTAGCGTTAGAAACTATGAATCACAACACCGACAAAGATACCAAACATGACACTAACACATCAACATTGCTAATAATTTAAAAACTTAAAATAATTAAATTAAGAGAGTCTTAGATGATCACAACCATTTCGGCATAAAATCTGGGCACGCTCACATATTTCAAAAAAGGTAGAGAGAAAAAATAATTAAATAATGTTTATCTTGATAATAATTAAATGATATGTATTTTGATGCGTGTGCGCCAAAATGATGTGCTCAAATCATTGTGACCATATAAGTATTTTCCTTAAATTAAATGTAATCACATCGGCATCAGAAACTAGACAACCTTCAATCTGAAGTGTACGTGCTACGTAGTTTATAAGCATTTTATTTAGGAAAACTAACTACTTTTATTTGAAATTTCTGCAGAAATACAGACTCTATCTGAAAAAACAAGCTAATATGGCCGAAGATTTGGGTAATGATTCTGATAGATCCTATTCAAGAATGGGTTATATCAGTGGAGTTGGTGGACATGTGCAGCCACTGAATGACCCTAGACAGTTTCATAATAATAACAGTGCTTTCAGATCCTTTCCATCTAGTGGTATGAGTAGTAGATTGTACACTCCTGCCAGTAGTGTTAATCTGCATGGATTTCCTGCACATAATTTGAACAACTCGACAGGTGATCATCTTAGGTTTCAATCGGCCATAGCTCGCGCCAATCTGAATGATGTTCAAAGAATGCCATTTCCTTCTGTAGACTCTCAACATTCACAGTTTTCTCATCCTTTACTTGAAAAAAGAAGGTGCAATGACATTTGGTCAAGCCCTATGCTGCAATTACCAGAAACAAACTCTTACCTTCCAAAAGAAGGTTTTGTCCATGCTGCTGCTATGCCTCCTACATATAACATGAACTCACAAGGTATTATTTTTAACAGTAGTTCTAATAATGTGCCATTTCAAGGATGGGATAATAACCATAACAACCATGATGGAAATTACCATCCTTCTCATGTGGTTGGTAGTTCAATAGGCCCTTCTATGATTCATGTTGTGAATGCTATTGAAGGAAACTTGGACAACAATTATTGTGATCGTATCGCGGAGTTACATGAAGTTCCGTCATTGAAACCACATGAGGTATATATGATGAATAATCAGATGAAGGCTGGAAATAGCCACATGTCTAATGAGCTTGATTCGCTCGAGGACGTCATGAGAGTCATGATCAAACCGGTAATAAAATTTATGCAATGCAATGAAGTTCTTATCTGAGTTTTTTTGTTTGATTGTTGATTTGAACATAAAAGTTCCGATGCATTTAACTTATGATCCATTTGTCTATATTGCTTTCTGATCATTAATTCTTTTGATGCAGAAACAATTATATGCCAATTTCTCTGGTGGGACATCAATGCCGCGGCAAGATTAG
Protein sequence

>MS.gene61187.t1

MNDQFPIGMRVLAVDDDRICLKILERLLQRCQYHVTTAQSALTALNLLRENKSNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGIDHGACDYLLKPVTLKEVQMIWQHVVRKKKTSKRSNLDAPNSDSGNGKHSAGTGNSDQIEKPSRKRKEKNEDDDEDENEDDRDNDDSTAQKKPRVVWSADLHRKFLAAVKQLGFEKAVPKKILDLMDDENLTRENVASHLQKYRLYLKKQANMAEDLGNDSDRSYSRMGYISGVGGHVQPLNDPRQFHNNNSAFRSFPSSGMSSRLYTPASSVNLHGFPAHNLNNSTGDHLRFQSAIARANLNDVQRMPFPSVDSQHSQFSHPLLEKRRCNDIWSSPMLQLPETNSYLPKEGFVHAAAMPPTYNMNSQGIIFNSSSNNVPFQGWDNNHNNHDGNYHPSHVVGSSIGPSMIHVVNAIEGNLDNNYCDRIAELHEVPSLKPHEVYMMNNQMKAGNSHMSNELDSLEDVMRVMIKPKQLYANFSGGTSMPRQD