Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61196.t1 | RHN51853.1 | 36.7 | 547 | 254 | 6 | 20 | 549 | 29 | 500 | 2.80E-101 | 379.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61196.t1 | A0A396HGY8 | 36.7 | 547 | 254 | 6 | 20 | 549 | 29 | 500 | 2.1e-101 | 379.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene61196.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61196.t1 | MTR_0091s0080 | 33.883 | 546 | 245 | 7 | 19 | 549 | 28 | 472 | 2.05e-107 | 330 |
MS.gene61196.t1 | MTR_0091s0090 | 42.512 | 207 | 118 | 1 | 335 | 541 | 4 | 209 | 3.26e-55 | 187 |
MS.gene61196.t1 | MTR_0091s0090 | 36.946 | 203 | 125 | 1 | 67 | 266 | 3 | 205 | 3.27e-40 | 147 |
MS.gene61196.t1 | MTR_1g052720 | 34.470 | 264 | 146 | 6 | 19 | 259 | 36 | 295 | 6.43e-49 | 172 |
MS.gene61196.t1 | MTR_1g052720 | 34.432 | 273 | 161 | 4 | 284 | 542 | 34 | 302 | 1.35e-47 | 168 |
MS.gene61196.t1 | MTR_6g465600 | 35.714 | 238 | 138 | 4 | 20 | 243 | 40 | 276 | 2.16e-44 | 160 |
MS.gene61196.t1 | MTR_6g465600 | 36.290 | 248 | 143 | 4 | 276 | 509 | 28 | 274 | 2.28e-44 | 159 |
MS.gene61196.t1 | MTR_0246s0040 | 34.091 | 264 | 156 | 7 | 293 | 555 | 72 | 318 | 1.31e-34 | 133 |
MS.gene61196.t1 | MTR_0246s0040 | 33.028 | 218 | 133 | 3 | 26 | 243 | 72 | 276 | 1.10e-32 | 128 |
MS.gene61196.t1 | MTR_1g105780 | 29.437 | 231 | 150 | 2 | 25 | 243 | 40 | 269 | 1.42e-29 | 118 |
MS.gene61196.t1 | MTR_1g105780 | 29.302 | 215 | 140 | 2 | 290 | 493 | 38 | 251 | 4.87e-26 | 108 |
MS.gene61196.t1 | MTR_7g110090 | 28.632 | 234 | 154 | 2 | 25 | 246 | 39 | 271 | 3.32e-29 | 117 |
MS.gene61196.t1 | MTR_7g110090 | 27.490 | 251 | 165 | 5 | 276 | 512 | 22 | 269 | 4.85e-24 | 102 |
MS.gene61196.t1 | MTR_1g105765 | 29.004 | 231 | 151 | 2 | 25 | 243 | 40 | 269 | 4.51e-29 | 116 |
MS.gene61196.t1 | MTR_1g105765 | 29.767 | 215 | 139 | 2 | 290 | 493 | 38 | 251 | 2.89e-26 | 108 |
MS.gene61196.t1 | MTR_3g070250 | 29.707 | 239 | 150 | 2 | 25 | 246 | 44 | 281 | 8.95e-27 | 110 |
MS.gene61196.t1 | MTR_3g070250 | 28.512 | 242 | 151 | 6 | 275 | 497 | 26 | 264 | 6.93e-20 | 90.5 |
MS.gene61196.t1 | MTR_4g032560 | 29.060 | 234 | 153 | 2 | 25 | 246 | 68 | 300 | 5.88e-26 | 108 |
MS.gene61196.t1 | MTR_4g032560 | 27.881 | 269 | 180 | 5 | 253 | 508 | 28 | 295 | 8.03e-22 | 96.7 |
MS.gene61196.t1 | MTR_1g084880 | 29.289 | 239 | 151 | 2 | 25 | 246 | 39 | 276 | 7.71e-26 | 107 |
MS.gene61196.t1 | MTR_1g084880 | 27.511 | 229 | 145 | 3 | 290 | 500 | 37 | 262 | 1.41e-18 | 86.7 |
MS.gene61196.t1 | MTR_3g048970 | 28.870 | 239 | 152 | 2 | 25 | 246 | 39 | 276 | 2.51e-25 | 106 |
MS.gene61196.t1 | MTR_3g048970 | 27.074 | 229 | 146 | 3 | 290 | 500 | 37 | 262 | 1.51e-18 | 86.3 |
MS.gene61196.t1 | MTR_4g032580 | 28.632 | 234 | 154 | 2 | 25 | 246 | 68 | 300 | 2.77e-25 | 106 |
MS.gene61196.t1 | MTR_4g032580 | 27.881 | 269 | 180 | 5 | 253 | 508 | 28 | 295 | 7.73e-22 | 96.7 |
MS.gene61196.t1 | MTR_3g085990 | 29.730 | 222 | 130 | 4 | 25 | 246 | 40 | 235 | 5.21e-25 | 103 |
MS.gene61196.t1 | MTR_3g085990 | 26.316 | 228 | 140 | 6 | 274 | 500 | 21 | 221 | 2.35e-15 | 76.3 |
MS.gene61196.t1 | MTR_1g023840 | 40.594 | 101 | 60 | 0 | 410 | 510 | 10 | 110 | 8.74e-22 | 92.0 |
MS.gene61196.t1 | MTR_1g023840 | 44.681 | 94 | 52 | 0 | 145 | 238 | 13 | 106 | 1.29e-21 | 91.7 |
MS.gene61196.t1 | MTR_7g050355 | 26.022 | 269 | 133 | 3 | 276 | 543 | 28 | 231 | 2.56e-21 | 98.2 |
MS.gene61196.t1 | MTR_4g062370 | 27.165 | 254 | 163 | 6 | 249 | 490 | 8 | 251 | 4.61e-19 | 91.7 |
MS.gene61196.t1 | MTR_4g062370 | 26.728 | 217 | 146 | 2 | 25 | 229 | 43 | 258 | 1.92e-18 | 89.7 |
MS.gene61196.t1 | MTR_1g047540 | 26.840 | 231 | 147 | 5 | 25 | 246 | 39 | 256 | 4.63e-19 | 90.5 |
MS.gene61196.t1 | MTR_1g047540 | 27.530 | 247 | 155 | 8 | 276 | 512 | 22 | 254 | 9.93e-17 | 83.6 |
MS.gene61196.t1 | MTR_5g066660 | 26.210 | 248 | 162 | 6 | 26 | 271 | 40 | 268 | 4.60e-18 | 85.1 |
MS.gene61196.t1 | MTR_5g066660 | 26.484 | 219 | 140 | 5 | 290 | 506 | 37 | 236 | 1.44e-12 | 68.6 |
MS.gene61196.t1 | MTR_2g100360 | 25.792 | 221 | 142 | 3 | 24 | 225 | 38 | 255 | 4.71e-18 | 84.7 |
MS.gene61196.t1 | MTR_2g100360 | 25.221 | 226 | 152 | 3 | 290 | 499 | 37 | 261 | 4.74e-16 | 79.0 |
MS.gene61196.t1 | MTR_2g038740 | 28.272 | 191 | 120 | 1 | 25 | 198 | 39 | 229 | 1.17e-17 | 87.0 |
MS.gene61196.t1 | MTR_2g038740 | 27.969 | 261 | 156 | 6 | 290 | 521 | 37 | 294 | 1.68e-17 | 86.7 |
MS.gene61196.t1 | MTR_8g064960 | 41.892 | 74 | 42 | 1 | 165 | 238 | 27 | 99 | 2.21e-17 | 78.6 |
MS.gene61196.t1 | MTR_8g064930 | 67.347 | 49 | 16 | 0 | 298 | 346 | 2 | 50 | 5.69e-17 | 75.5 |
MS.gene61196.t1 | MTR_3g452180 | 26.374 | 182 | 121 | 2 | 77 | 246 | 7 | 187 | 5.71e-17 | 79.7 |
MS.gene61196.t1 | MTR_3g452180 | 25.824 | 182 | 119 | 4 | 344 | 512 | 7 | 185 | 6.51e-14 | 70.9 |
MS.gene61196.t1 | MTR_4g117740 | 28.571 | 154 | 93 | 2 | 36 | 189 | 61 | 197 | 1.18e-16 | 79.0 |
MS.gene61196.t1 | MTR_4g117740 | 27.815 | 151 | 91 | 2 | 307 | 457 | 65 | 197 | 1.27e-13 | 70.1 |
MS.gene61196.t1 | MTR_1g087870 | 25.000 | 240 | 153 | 6 | 40 | 258 | 2 | 235 | 5.66e-16 | 78.6 |
MS.gene61196.t1 | MTR_1g087870 | 25.114 | 219 | 147 | 4 | 307 | 509 | 2 | 219 | 7.22e-16 | 78.2 |
MS.gene61196.t1 | MTR_6g033605 | 37.349 | 83 | 51 | 1 | 165 | 246 | 30 | 112 | 1.72e-14 | 70.5 |
MS.gene61196.t1 | MTR_6g033605 | 32.927 | 82 | 54 | 1 | 433 | 513 | 30 | 111 | 1.31e-12 | 65.1 |
MS.gene61196.t1 | MTR_0521s0010 | 26.519 | 181 | 102 | 2 | 26 | 189 | 34 | 200 | 1.95e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 147 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTCTGTGGCAAGGATTTC+TGG | 0.139608 | 8.2:+14872124 | None:intergenic |
AAACTGGACCGTCGTGATTT+TGG | 0.142859 | 8.2:-14873824 | MS.gene61196:CDS |
CAATCCAGCCTTGTTTCTTA+TGG | 0.243933 | 8.2:+14872407 | None:intergenic |
CGGTCCAGTTTGGATATTAT+TGG | 0.264347 | 8.2:+14873836 | None:intergenic |
ATCCATGGGTGCAGTGTATT+GGG | 0.290852 | 8.2:+14871899 | None:intergenic |
CATTAGACATTGCCGTGGTT+TGG | 0.309583 | 8.2:-14873628 | MS.gene61196:intron |
CTCATCATTGCCATCTCACT+TGG | 0.320277 | 8.2:+14874270 | None:intergenic |
TGTCACGCTGAATGAACTTT+AGG | 0.324413 | 8.2:+14873527 | None:intergenic |
ACAAATGCAGATTTGATTAG+AGG | 0.328195 | 8.2:-14873361 | MS.gene61196:CDS |
ATTAGACATTGCCGTGGTTT+GGG | 0.336423 | 8.2:-14873627 | MS.gene61196:intron |
CCGAGGTTCATTACTTCATC+AGG | 0.337428 | 8.2:-14872345 | MS.gene61196:CDS |
GATATATCGGATAATGGATA+TGG | 0.364913 | 8.2:+14872378 | None:intergenic |
CCTACCACACTTACGATTGT+TGG | 0.366401 | 8.2:-14872102 | MS.gene61196:CDS |
ACCTCTGCGATGTGCAAATC+AGG | 0.368835 | 8.2:+14871995 | None:intergenic |
ATCGTCAAGGTCATAAGATT+TGG | 0.374229 | 8.2:+14873905 | None:intergenic |
ACATCGCAGAGGTTGGTTGC+AGG | 0.375369 | 8.2:-14871985 | MS.gene61196:CDS |
ACAACAATGATATTGTTGTT+TGG | 0.386359 | 8.2:+14872558 | None:intergenic |
ACCTCAATCTCATTGTTCAT+TGG | 0.386489 | 8.2:+14874037 | None:intergenic |
GATATTTATAACATTGTAGA+TGG | 0.391221 | 8.2:-14872477 | MS.gene61196:CDS |
GACTTCGTCTGATGTCCTCT+CGG | 0.399084 | 8.2:-14872277 | MS.gene61196:CDS |
TATCCATGGGTGCAGTGTAT+TGG | 0.399336 | 8.2:+14871898 | None:intergenic |
ACTTCAGACAAGGCTGGTCT+AGG | 0.399428 | 8.2:-14872506 | MS.gene61196:CDS |
GCAAGGGATATATCGGATAA+TGG | 0.403725 | 8.2:+14872372 | None:intergenic |
AAAATCACGACGGTCCAGTT+TGG | 0.405460 | 8.2:+14873826 | None:intergenic |
ATGCTATGATTGGTGGTGAT+TGG | 0.409098 | 8.2:-14872020 | MS.gene61196:CDS |
TACTCCAATAATATCCAAAC+TGG | 0.412151 | 8.2:-14873840 | MS.gene61196:CDS |
GGATGTTAACTCAGGATGTT+TGG | 0.412783 | 8.2:-14873750 | MS.gene61196:intron |
CATAAGAAACAAGGCTGGAT+TGG | 0.419848 | 8.2:-14872406 | MS.gene61196:CDS |
AACCAGACTTTGCCGTGGTA+TGG | 0.440028 | 8.2:-14872153 | MS.gene61196:intron |
CACTATTGAATTGACTTACT+CGG | 0.440432 | 8.2:-14873771 | MS.gene61196:CDS |
TTGATTACGTTGGATTTGCC+TGG | 0.442541 | 8.2:-14873558 | MS.gene61196:CDS |
GTGTACAATTGAAGGTGATT+GGG | 0.443885 | 8.2:-14873494 | MS.gene61196:CDS |
AAACCTATGGTCAGCGGCAG+TGG | 0.455398 | 8.2:-14871868 | MS.gene61196:CDS |
GAACTTTAGGTCACATCTCC+AGG | 0.457339 | 8.2:+14873540 | None:intergenic |
ACTCCTATGTGTACAATTGA+AGG | 0.457401 | 8.2:-14873502 | MS.gene61196:CDS |
CGGCAACGCAAGGGATATAT+CGG | 0.461190 | 8.2:+14872365 | None:intergenic |
CAGACATAGTGTCAAATTCA+AGG | 0.463743 | 8.2:+14874238 | None:intergenic |
GACAAAGATAACACAGTCCT+TGG | 0.465488 | 8.2:-14871934 | MS.gene61196:CDS |
TGTGTACAATTGAAGGTGAT+TGG | 0.473160 | 8.2:-14873495 | MS.gene61196:CDS |
TCATCATTGCCATCTCACTT+GGG | 0.476104 | 8.2:+14874271 | None:intergenic |
TTCGATAGACCTTGCGGTCA+CGG | 0.478744 | 8.2:-14873434 | MS.gene61196:CDS |
CTGTGCGAAGGGACCTGTCT+CGG | 0.479542 | 8.2:-14873163 | MS.gene61196:CDS |
TAGGTTTCACATAGTATCCA+TGG | 0.490660 | 8.2:+14871884 | None:intergenic |
ATGGTCATGAGTAGTAGATT+AGG | 0.500878 | 8.2:+14872426 | None:intergenic |
TGGGTCTATCTGAAATATGC+GGG | 0.502250 | 8.2:-14872450 | MS.gene61196:CDS |
TTGGTCCGAACGGCTGTACA+TGG | 0.502745 | 8.2:-14872083 | MS.gene61196:CDS |
ACAGTGAGGTCCGTATTTAT+CGG | 0.505137 | 8.2:+14873583 | None:intergenic |
GAAGGGACCTGTCTCGGTTG+AGG | 0.505460 | 8.2:-14873157 | MS.gene61196:CDS |
GCTTCTATATTCTGTTTCCA+AGG | 0.505945 | 8.2:-14873307 | MS.gene61196:intron |
TCTGCATTTGTAGACGGCAC+AGG | 0.506847 | 8.2:+14873373 | None:intergenic |
GACTTCTACAACATTGAGCT+TGG | 0.507615 | 8.2:-14873956 | MS.gene61196:CDS |
TCACCACCAATCATAGCATA+AGG | 0.511917 | 8.2:+14872024 | None:intergenic |
ACTTCGTCTGATGTCCTCTC+GGG | 0.511997 | 8.2:-14872276 | MS.gene61196:CDS |
CATCTCCATGTACAGCCGTT+CGG | 0.512529 | 8.2:+14872078 | None:intergenic |
GAGTATGCTGGAACAGATGT+CGG | 0.514049 | 8.2:-14871797 | MS.gene61196:CDS |
AATATGCCTTATGCTATGAT+TGG | 0.515256 | 8.2:-14872030 | MS.gene61196:CDS |
TCCAATGAACAATGAGATTG+AGG | 0.518221 | 8.2:-14874038 | MS.gene61196:CDS |
AGCTTTATATGAGGAAAGGT+TGG | 0.518511 | 8.2:-14873991 | MS.gene61196:CDS |
GATAAGTCCTCAACCGAGAC+AGG | 0.525131 | 8.2:+14873150 | None:intergenic |
CGACCACTGCCGCTGACCAT+AGG | 0.527761 | 8.2:+14871865 | None:intergenic |
ACCCCAATACACTGCACCCA+TGG | 0.533195 | 8.2:-14871901 | MS.gene61196:CDS |
CAGTGGTCGATATGTGTACC+AGG | 0.539166 | 8.2:-14871851 | MS.gene61196:CDS |
ATTATTGGAGTAGTGTGAGC+AGG | 0.541688 | 8.2:+14873851 | None:intergenic |
TAATGAACCTCGGCAACGCA+AGG | 0.541750 | 8.2:+14872355 | None:intergenic |
TGATGTCCTCTCGGGCACTT+TGG | 0.543138 | 8.2:-14872268 | MS.gene61196:intron |
TTGCAAGGCGAAGAGTATGC+TGG | 0.545573 | 8.2:-14871809 | MS.gene61196:CDS |
ATAACATTGTAGATGGTGCA+TGG | 0.547247 | 8.2:-14872470 | MS.gene61196:CDS |
CGAGGTTCATTACTTCATCA+GGG | 0.547766 | 8.2:-14872344 | MS.gene61196:CDS |
CATATTATTTGCAACAGCGA+AGG | 0.553325 | 8.2:+14872047 | None:intergenic |
CTTCAGACAAGGCTGGTCTA+GGG | 0.553757 | 8.2:-14872505 | MS.gene61196:CDS |
CGTGTTACCTCCGATAAATA+CGG | 0.556373 | 8.2:-14873593 | MS.gene61196:CDS |
AACGACCTTCGACAAACCTA+CGG | 0.556786 | 8.2:+14873455 | None:intergenic |
AGTATGCTGGAACAGATGTC+GGG | 0.557360 | 8.2:-14871796 | MS.gene61196:CDS |
CTTACGATTGTTGGTCCGAA+CGG | 0.558198 | 8.2:-14872093 | MS.gene61196:CDS |
CTCACTGTCATTGATTACGT+TGG | 0.558362 | 8.2:-14873568 | MS.gene61196:CDS |
TATATGAGGAAAGGTTGGTA+TGG | 0.559929 | 8.2:-14873986 | MS.gene61196:CDS |
GATTTGCACATCGCAGAGGT+TGG | 0.560790 | 8.2:-14871992 | MS.gene61196:CDS |
GGACTGTGTTATCTTTGTCA+TGG | 0.561082 | 8.2:+14871938 | None:intergenic |
TCTTCTCCTCCGTGACCGCA+AGG | 0.561112 | 8.2:+14873425 | None:intergenic |
TGGATACTATGTGAAACCTA+TGG | 0.563204 | 8.2:-14871881 | MS.gene61196:CDS |
TCAGACTGCAATATGAACCT+TGG | 0.563823 | 8.2:+14873331 | None:intergenic |
TGCAGTGTATTGGGGTATGT+CGG | 0.565836 | 8.2:+14871908 | None:intergenic |
CTGCATTTGTAGACGGCACA+GGG | 0.566431 | 8.2:+14873374 | None:intergenic |
TGATTAGAGGCATTGATCCA+AGG | 0.567311 | 8.2:-14873348 | MS.gene61196:CDS |
ATATATCCCTTGCGTTGCCG+AGG | 0.568869 | 8.2:-14872362 | MS.gene61196:CDS |
TGTGGTAGGTTTCTGTGGCA+AGG | 0.569531 | 8.2:+14872116 | None:intergenic |
GACAAGCTTTATATGAGGAA+AGG | 0.570103 | 8.2:-14873995 | MS.gene61196:CDS |
ATCTCACTTGGGGTATACGT+TGG | 0.570410 | 8.2:+14874282 | None:intergenic |
TAACATTGTAGATGGTGCAT+GGG | 0.570614 | 8.2:-14872469 | MS.gene61196:CDS |
ACTTACTCGGATGTTAACTC+AGG | 0.572912 | 8.2:-14873758 | MS.gene61196:CDS |
GAAAGGTTGGTATGGACTGA+AGG | 0.575278 | 8.2:-14873978 | MS.gene61196:CDS |
GAGGCGACAAGCTTTATATG+AGG | 0.576586 | 8.2:-14874000 | MS.gene61196:CDS |
ACAAGGCTGGTCTAGGGTGA+AGG | 0.576887 | 8.2:-14872499 | MS.gene61196:CDS |
CATCATTGCCATCTCACTTG+GGG | 0.579124 | 8.2:+14874272 | None:intergenic |
AACGTATACCCCAAGTGAGA+TGG | 0.579805 | 8.2:-14874280 | MS.gene61196:CDS |
AAATCTGTTGTTGATCGTCA+AGG | 0.579813 | 8.2:+14873892 | None:intergenic |
ACAACATTGAGCTTGGTGCA+TGG | 0.580204 | 8.2:-14873949 | MS.gene61196:CDS |
CCAACAATCGTAAGTGTGGT+AGG | 0.580385 | 8.2:+14872102 | None:intergenic |
CGAGACAGGTCCCTTCGCAC+AGG | 0.583465 | 8.2:+14873164 | None:intergenic |
ACGACCTTCGACAAACCTAC+GGG | 0.584033 | 8.2:+14873456 | None:intergenic |
AGGTCTACTTCAGACAAGGC+TGG | 0.585540 | 8.2:-14872512 | MS.gene61196:CDS |
ATCAAATCTGCATTTGTAGA+CGG | 0.590289 | 8.2:+14873367 | None:intergenic |
GCATGAAAATGTTGTAGGTG+GGG | 0.592686 | 8.2:-14874319 | MS.gene61196:CDS |
TCACTATCTCAAATATTGCA+AGG | 0.596203 | 8.2:-14871824 | MS.gene61196:CDS |
TGCATGAAAATGTTGTAGGT+GGG | 0.596497 | 8.2:-14874320 | MS.gene61196:CDS |
ATGACCATAAGAAACAAGGC+TGG | 0.597597 | 8.2:-14872411 | MS.gene61196:CDS |
CGACCTCGATCCTGTGCGAA+GGG | 0.601460 | 8.2:-14873174 | MS.gene61196:CDS |
ATGCCTTATGCTATGATTGG+TGG | 0.601798 | 8.2:-14872027 | MS.gene61196:CDS |
TTGGGGTATGTCGGAAACCA+AGG | 0.606539 | 8.2:+14871917 | None:intergenic |
AATGAACCTCGGCAACGCAA+GGG | 0.607154 | 8.2:+14872356 | None:intergenic |
AGCATGCATGAAAATGTTGT+AGG | 0.609002 | 8.2:-14874324 | MS.gene61196:CDS |
TGTACAATTGAAGGTGATTG+GGG | 0.612279 | 8.2:-14873493 | MS.gene61196:CDS |
GTAAGTGTGGTAGGTTTCTG+TGG | 0.617237 | 8.2:+14872111 | None:intergenic |
AGGTTTCACATAGTATCCAT+GGG | 0.622147 | 8.2:+14871885 | None:intergenic |
CAACAGCGAACTTAACTGCA+TGG | 0.624703 | 8.2:+14871962 | None:intergenic |
CATGAAAATGTTGTAGGTGG+GGG | 0.624750 | 8.2:-14874318 | MS.gene61196:CDS |
TCCATGGGTGCAGTGTATTG+GGG | 0.627336 | 8.2:+14871900 | None:intergenic |
ATGCATGAAAATGTTGTAGG+TGG | 0.627822 | 8.2:-14874321 | MS.gene61196:CDS |
ACCTGATTTGCACATCGCAG+AGG | 0.634639 | 8.2:-14871996 | MS.gene61196:CDS |
GGACAATATGTAAGGCCCGT+AGG | 0.636455 | 8.2:-14873471 | MS.gene61196:CDS |
TCACCTTCAATTGTACACAT+AGG | 0.636668 | 8.2:+14873499 | None:intergenic |
ATGGGTCTATCTGAAATATG+CGG | 0.636801 | 8.2:-14872451 | MS.gene61196:CDS |
ACGACCTCGATCCTGTGCGA+AGG | 0.639634 | 8.2:-14873175 | MS.gene61196:CDS |
ATCTGCATTAGACATTGCCG+TGG | 0.643012 | 8.2:-14873633 | MS.gene61196:intron |
GGTCCCTTCGCACAGGATCG+AGG | 0.647508 | 8.2:+14873171 | None:intergenic |
TTCTGGCAGAAGCCATACCA+CGG | 0.648051 | 8.2:+14872141 | None:intergenic |
GGCAAGGTCTACTTCAGACA+AGG | 0.649008 | 8.2:-14872516 | MS.gene61196:CDS |
CCTGATGAAGTAATGAACCT+CGG | 0.649312 | 8.2:+14872345 | None:intergenic |
CGCTTACAGAACCCAAACCA+CGG | 0.655051 | 8.2:+14873616 | None:intergenic |
TTATTTAGCAGTTAAAGGCG+AGG | 0.655685 | 8.2:-14872644 | MS.gene61196:intron |
GAGGTTCATTACTTCATCAG+GGG | 0.659487 | 8.2:-14872343 | MS.gene61196:CDS |
CAAGTGAGATGGCAATGATG+AGG | 0.660753 | 8.2:-14874269 | MS.gene61196:CDS |
ACTCATGACCATAAGAAACA+AGG | 0.663177 | 8.2:-14872415 | MS.gene61196:CDS |
TCAAAATCTTGACAGATGTG+CGG | 0.663839 | 8.2:+14872298 | None:intergenic |
CGGACCAACAATCGTAAGTG+TGG | 0.667344 | 8.2:+14872098 | None:intergenic |
ATTTGAGATAGTGATTGACC+TGG | 0.673697 | 8.2:+14871833 | None:intergenic |
GGGTCTATCTGAAATATGCG+GGG | 0.673953 | 8.2:-14872449 | MS.gene61196:CDS |
TATATACCAAAGTGCCCGAG+AGG | 0.678235 | 8.2:+14872262 | None:intergenic |
AAGGCCCGTAGGTTTGTCGA+AGG | 0.678246 | 8.2:-14873460 | MS.gene61196:CDS |
TGTTTAACCAGACTTTGCCG+TGG | 0.679547 | 8.2:-14872158 | MS.gene61196:intron |
GTGAGGTCCGTATTTATCGG+AGG | 0.693002 | 8.2:+14873586 | None:intergenic |
AGGTCGTTCGATAGACCTTG+CGG | 0.706168 | 8.2:-14873440 | MS.gene61196:CDS |
TATGTGAAACCTATGGTCAG+CGG | 0.713139 | 8.2:-14871874 | MS.gene61196:CDS |
GAGGTTCGACTGTATCGCAG+AGG | 0.730544 | 8.2:-14874019 | MS.gene61196:CDS |
CAACGTAATCAATGACAGTG+AGG | 0.734984 | 8.2:+14873569 | None:intergenic |
GATAGACCTTGCGGTCACGG+AGG | 0.760484 | 8.2:-14873431 | MS.gene61196:CDS |
GTACAATTGAAGGTGATTGG+GGG | 0.819509 | 8.2:-14873492 | MS.gene61196:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAACCATATAAATTCAT+TGG | + | chr8.2:14872902-14872921 | None:intergenic | 15.0% |
!! | GGTTAATATAATTAGATATT+TGG | - | chr8.2:14873887-14873906 | MS.gene61196:CDS | 15.0% |
!! | TACATTCTAATTTGAATATA+TGG | - | chr8.2:14873142-14873161 | MS.gene61196:CDS | 15.0% |
!!! | TATGTTAACATTTTCTATTA+TGG | - | chr8.2:14873417-14873436 | MS.gene61196:CDS | 15.0% |
!! | AGAAATAAACAATAACACAA+CGG | + | chr8.2:14872415-14872434 | None:intergenic | 20.0% |
!! | ATGTTAACATAAATTTATGC+CGG | + | chr8.2:14873408-14873427 | None:intergenic | 20.0% |
!! | GATATTTATAACATTGTAGA+TGG | - | chr8.2:14873636-14873655 | MS.gene61196:intron | 20.0% |
!!! | AACTAACGTACAAATTTTTT+CGG | + | chr8.2:14873307-14873326 | None:intergenic | 20.0% |
! | ATTTCGTTCATTCGATTATA+AGG | - | chr8.2:14873912-14873931 | MS.gene61196:CDS | 25.0% |
! | GTTTCCTATCTAATATCATA+AGG | - | chr8.2:14873439-14873458 | MS.gene61196:CDS | 25.0% |
! | TTAGCATCAAACACATTTAT+TGG | + | chr8.2:14871960-14871979 | None:intergenic | 25.0% |
! | TTTCTGTTTGTGTTTAGTAA+CGG | - | chr8.2:14872444-14872463 | MS.gene61196:CDS | 25.0% |
!! | AAATTTTCACGACAACAATA+AGG | - | chr8.2:14873115-14873134 | MS.gene61196:intron | 25.0% |
!! | ACAACAATGATATTGTTGTT+TGG | + | chr8.2:14873558-14873577 | None:intergenic | 25.0% |
!! | GGTATATAATTTGCACTAAT+TGG | - | chr8.2:14873866-14873885 | MS.gene61196:CDS | 25.0% |
!! | TATATGTTGTTTATTCTGTC+CGG | - | chr8.2:14872856-14872875 | MS.gene61196:intron | 25.0% |
AACAACATATACTTCAGTTC+AGG | + | chr8.2:14872847-14872866 | None:intergenic | 30.0% | |
AAGGTTATCTTACTGTTTGT+TGG | - | chr8.2:14873931-14873950 | MS.gene61196:CDS | 30.0% | |
AATATGCCTTATGCTATGAT+TGG | - | chr8.2:14874083-14874102 | MS.gene61196:CDS | 30.0% | |
ACAAATGCAGATTTGATTAG+AGG | - | chr8.2:14872752-14872771 | MS.gene61196:intron | 30.0% | |
ACAACATATACTTCAGTTCA+GGG | + | chr8.2:14872846-14872865 | None:intergenic | 30.0% | |
ACGAATAACAATCAAATTGC+CGG | + | chr8.2:14872878-14872897 | None:intergenic | 30.0% | |
AGTTATCATAAACTCTGTCT+AGG | - | chr8.2:14873264-14873283 | MS.gene61196:intron | 30.0% | |
ATCAAATCTGCATTTGTAGA+CGG | + | chr8.2:14872749-14872768 | None:intergenic | 30.0% | |
CACACCTTATGATATTAGAT+AGG | + | chr8.2:14873446-14873465 | None:intergenic | 30.0% | |
CAGATATACTTTCTTATGTC+CGG | - | chr8.2:14873386-14873405 | MS.gene61196:CDS | 30.0% | |
GTTGAAGTTCAGAAAAAGAA+TGG | - | chr8.2:14873576-14873595 | MS.gene61196:CDS | 30.0% | |
TACTCCAATAATATCCAAAC+TGG | - | chr8.2:14872273-14872292 | MS.gene61196:CDS | 30.0% | |
TAGTCTTTCAAAAAGCAGTT+AGG | + | chr8.2:14872019-14872038 | None:intergenic | 30.0% | |
TATGTCCTCATCTATTAGAA+TGG | + | chr8.2:14871930-14871949 | None:intergenic | 30.0% | |
TCACTATCTCAAATATTGCA+AGG | - | chr8.2:14874289-14874308 | MS.gene61196:CDS | 30.0% | |
TCTATTACTCTCTACAAATC+CGG | + | chr8.2:14873200-14873219 | None:intergenic | 30.0% | |
TTCGTGCCAATGAATTTATA+TGG | - | chr8.2:14872893-14872912 | MS.gene61196:intron | 30.0% | |
! | AACAAAACTTGGTGGTTAAA+AGG | + | chr8.2:14873070-14873089 | None:intergenic | 30.0% |
! | ACTTCTTTTGCAAAACATGA+AGG | + | chr8.2:14873498-14873517 | None:intergenic | 30.0% |
! | CACTATTGAATTGACTTACT+CGG | - | chr8.2:14872342-14872361 | MS.gene61196:CDS | 30.0% |
! | TCATGTTTTGCAAAAGAAGT+AGG | - | chr8.2:14873498-14873517 | MS.gene61196:CDS | 30.0% |
! | TGTCCTTATTTAGCAGTTAA+AGG | - | chr8.2:14873464-14873483 | MS.gene61196:CDS | 30.0% |
! | TGTTAATTTTCGTAGGGAAT+GGG | - | chr8.2:14871986-14872005 | MS.gene61196:CDS | 30.0% |
!! | GATATATCGGATAATGGATA+TGG | + | chr8.2:14873738-14873757 | None:intergenic | 30.0% |
!!! | AACTGCTTTTTGAAAGACTA+TGG | - | chr8.2:14872019-14872038 | MS.gene61196:CDS | 30.0% |
!!! | ATTTGTACGTTAGTTTTGTG+CGG | - | chr8.2:14873312-14873331 | MS.gene61196:CDS | 30.0% |
AAATCTGTTGTTGATCGTCA+AGG | + | chr8.2:14872224-14872243 | None:intergenic | 35.0% | |
AACGCAGCATAAACAAAACT+TGG | + | chr8.2:14873081-14873100 | None:intergenic | 35.0% | |
ACCTCAATCTCATTGTTCAT+TGG | + | chr8.2:14872079-14872098 | None:intergenic | 35.0% | |
ACTCATGACCATAAGAAACA+AGG | - | chr8.2:14873698-14873717 | MS.gene61196:intron | 35.0% | |
ACTCCTATGTGTACAATTGA+AGG | - | chr8.2:14872611-14872630 | MS.gene61196:CDS | 35.0% | |
AGGTTTCACATAGTATCCAT+GGG | + | chr8.2:14874231-14874250 | None:intergenic | 35.0% | |
AGTTCAGAAAAAGAATGGCA+AGG | - | chr8.2:14873581-14873600 | MS.gene61196:CDS | 35.0% | |
ATAACATTGTAGATGGTGCA+TGG | - | chr8.2:14873643-14873662 | MS.gene61196:intron | 35.0% | |
ATCGTCAAGGTCATAAGATT+TGG | + | chr8.2:14872211-14872230 | None:intergenic | 35.0% | |
ATGCATGAAAATGTTGTAGG+TGG | - | chr8.2:14871792-14871811 | MS.gene61196:CDS | 35.0% | |
ATGGTCATGAGTAGTAGATT+AGG | + | chr8.2:14873690-14873709 | None:intergenic | 35.0% | |
CAGACATAGTGTCAAATTCA+AGG | + | chr8.2:14871878-14871897 | None:intergenic | 35.0% | |
CATATTATTTGCAACAGCGA+AGG | + | chr8.2:14874069-14874088 | None:intergenic | 35.0% | |
CATCAAACACATTTATTGGC+AGG | + | chr8.2:14871956-14871975 | None:intergenic | 35.0% | |
GCTTCTATATTCTGTTTCCA+AGG | - | chr8.2:14872806-14872825 | MS.gene61196:intron | 35.0% | |
GTGTACAATTGAAGGTGATT+GGG | - | chr8.2:14872619-14872638 | MS.gene61196:CDS | 35.0% | |
TAACATTGTAGATGGTGCAT+GGG | - | chr8.2:14873644-14873663 | MS.gene61196:intron | 35.0% | |
TAGGTTTCACATAGTATCCA+TGG | + | chr8.2:14874232-14874251 | None:intergenic | 35.0% | |
TCAAAATCTTGACAGATGTG+CGG | + | chr8.2:14873818-14873837 | None:intergenic | 35.0% | |
TCACCTTCAATTGTACACAT+AGG | + | chr8.2:14872617-14872636 | None:intergenic | 35.0% | |
TCCAATGAACAATGAGATTG+AGG | - | chr8.2:14872075-14872094 | MS.gene61196:CDS | 35.0% | |
TCCTCATCTATTAGAATGGT+CGG | + | chr8.2:14871926-14871945 | None:intergenic | 35.0% | |
TCGCCTTTAACTGCTAAATA+AGG | + | chr8.2:14873470-14873489 | None:intergenic | 35.0% | |
TGCATGAAAATGTTGTAGGT+GGG | - | chr8.2:14871793-14871812 | MS.gene61196:CDS | 35.0% | |
TGGATACTATGTGAAACCTA+TGG | - | chr8.2:14874232-14874251 | MS.gene61196:intron | 35.0% | |
TGTACAATTGAAGGTGATTG+GGG | - | chr8.2:14872620-14872639 | MS.gene61196:CDS | 35.0% | |
TGTGTACAATTGAAGGTGAT+TGG | - | chr8.2:14872618-14872637 | MS.gene61196:CDS | 35.0% | |
TTATTTAGCAGTTAAAGGCG+AGG | - | chr8.2:14873469-14873488 | MS.gene61196:CDS | 35.0% | |
! | AGCTTTATATGAGGAAAGGT+TGG | - | chr8.2:14872122-14872141 | MS.gene61196:CDS | 35.0% |
! | ATATGGTTGAAGAGTGTAAG+TGG | - | chr8.2:14873159-14873178 | MS.gene61196:CDS | 35.0% |
! | ATGGGTCTATCTGAAATATG+CGG | - | chr8.2:14873662-14873681 | MS.gene61196:intron | 35.0% |
! | ATTTGAGATAGTGATTGACC+TGG | + | chr8.2:14874283-14874302 | None:intergenic | 35.0% |
! | CATGTCTGAAATAGAAACCA+TGG | - | chr8.2:14873348-14873367 | MS.gene61196:CDS | 35.0% |
! | GACAAGCTTTATATGAGGAA+AGG | - | chr8.2:14872118-14872137 | MS.gene61196:CDS | 35.0% |
! | GATCAACAACAGATTTTTCG+AGG | - | chr8.2:14872228-14872247 | MS.gene61196:intron | 35.0% |
! | GTGTTAATTTTCGTAGGGAA+TGG | - | chr8.2:14871985-14872004 | MS.gene61196:CDS | 35.0% |
!! | TATATGAGGAAAGGTTGGTA+TGG | - | chr8.2:14872127-14872146 | MS.gene61196:CDS | 35.0% |
!! | TGCTTTTTGAAAGACTATGG+TGG | - | chr8.2:14872022-14872041 | MS.gene61196:CDS | 35.0% |
ACAGTGAGGTCCGTATTTAT+CGG | + | chr8.2:14872533-14872552 | None:intergenic | 40.0% | |
ACTTACTCGGATGTTAACTC+AGG | - | chr8.2:14872355-14872374 | MS.gene61196:CDS | 40.0% | |
AGGATGTTTGGTATTCACTG+TGG | - | chr8.2:14872375-14872394 | MS.gene61196:CDS | 40.0% | |
ATGACCATAAGAAACAAGGC+TGG | - | chr8.2:14873702-14873721 | MS.gene61196:intron | 40.0% | |
ATGCCTTATGCTATGATTGG+TGG | - | chr8.2:14874086-14874105 | MS.gene61196:CDS | 40.0% | |
ATTAGACATTGCCGTGGTTT+GGG | - | chr8.2:14872486-14872505 | MS.gene61196:CDS | 40.0% | |
ATTATTGGAGTAGTGTGAGC+AGG | + | chr8.2:14872265-14872284 | None:intergenic | 40.0% | |
CAACGTAATCAATGACAGTG+AGG | + | chr8.2:14872547-14872566 | None:intergenic | 40.0% | |
CATAAGAAACAAGGCTGGAT+TGG | - | chr8.2:14873707-14873726 | MS.gene61196:intron | 40.0% | |
CATGAAAATGTTGTAGGTGG+GGG | - | chr8.2:14871795-14871814 | MS.gene61196:CDS | 40.0% | |
CCTGATGAAGTAATGAACCT+CGG | + | chr8.2:14873771-14873790 | None:intergenic | 40.0% | |
CGAGGTTCATTACTTCATCA+GGG | - | chr8.2:14873769-14873788 | MS.gene61196:CDS | 40.0% | |
CGGTCCAGTTTGGATATTAT+TGG | + | chr8.2:14872280-14872299 | None:intergenic | 40.0% | |
CGTGTTACCTCCGATAAATA+CGG | - | chr8.2:14872520-14872539 | MS.gene61196:CDS | 40.0% | |
GACAAAGATAACACAGTCCT+TGG | - | chr8.2:14874179-14874198 | MS.gene61196:intron | 40.0% | |
GACTTCTACAACATTGAGCT+TGG | - | chr8.2:14872157-14872176 | MS.gene61196:intron | 40.0% | |
GAGGTTCATTACTTCATCAG+GGG | - | chr8.2:14873770-14873789 | MS.gene61196:CDS | 40.0% | |
GCAAGGGATATATCGGATAA+TGG | + | chr8.2:14873744-14873763 | None:intergenic | 40.0% | |
GCAGCATAAACAAAACTTGG+TGG | + | chr8.2:14873078-14873097 | None:intergenic | 40.0% | |
GCATGAAAATGTTGTAGGTG+GGG | - | chr8.2:14871794-14871813 | MS.gene61196:CDS | 40.0% | |
GGACTGTGTTATCTTTGTCA+TGG | + | chr8.2:14874178-14874197 | None:intergenic | 40.0% | |
GGATGTTAACTCAGGATGTT+TGG | - | chr8.2:14872363-14872382 | MS.gene61196:CDS | 40.0% | |
GGGTACAAAATGCATAACCT+TGG | + | chr8.2:14872826-14872845 | None:intergenic | 40.0% | |
GTACAATTGAAGGTGATTGG+GGG | - | chr8.2:14872621-14872640 | MS.gene61196:CDS | 40.0% | |
GTGGATAAAATGATGCAGAC+CGG | - | chr8.2:14873178-14873197 | MS.gene61196:CDS | 40.0% | |
TATGTGAAACCTATGGTCAG+CGG | - | chr8.2:14874239-14874258 | MS.gene61196:CDS | 40.0% | |
TCACCACCAATCATAGCATA+AGG | + | chr8.2:14874092-14874111 | None:intergenic | 40.0% | |
TCAGACTGCAATATGAACCT+TGG | + | chr8.2:14872785-14872804 | None:intergenic | 40.0% | |
TCATCATTGCCATCTCACTT+GGG | + | chr8.2:14871845-14871864 | None:intergenic | 40.0% | |
TCCGACCATTCTAATAGATG+AGG | - | chr8.2:14871922-14871941 | MS.gene61196:CDS | 40.0% | |
TGACAGATAAAGTTCAGCCA+TGG | + | chr8.2:14873368-14873387 | None:intergenic | 40.0% | |
TGATTGGGGGACAATATGTA+AGG | - | chr8.2:14872634-14872653 | MS.gene61196:CDS | 40.0% | |
TGCGGAAAAAATGCACTAAC+TGG | + | chr8.2:14873800-14873819 | None:intergenic | 40.0% | |
TGTCACGCTGAATGAACTTT+AGG | + | chr8.2:14872589-14872608 | None:intergenic | 40.0% | |
TTGATTACGTTGGATTTGCC+TGG | - | chr8.2:14872555-14872574 | MS.gene61196:CDS | 40.0% | |
! | AATTTTCGTAGGGAATGGGT+CGG | - | chr8.2:14871990-14872009 | MS.gene61196:CDS | 40.0% |
! | ATGCGCGTGTTAATTTTCGT+AGG | - | chr8.2:14871979-14871998 | MS.gene61196:CDS | 40.0% |
! | CTCACTGTCATTGATTACGT+TGG | - | chr8.2:14872545-14872564 | MS.gene61196:CDS | 40.0% |
! | TGCGCGTGTTAATTTTCGTA+GGG | - | chr8.2:14871980-14871999 | MS.gene61196:CDS | 40.0% |
! | TGGGTCTATCTGAAATATGC+GGG | - | chr8.2:14873663-14873682 | MS.gene61196:intron | 40.0% |
!! | ATGCTATGATTGGTGGTGAT+TGG | - | chr8.2:14874093-14874112 | MS.gene61196:CDS | 40.0% |
!! | CAATCCAGCCTTGTTTCTTA+TGG | + | chr8.2:14873709-14873728 | None:intergenic | 40.0% |
!! | TGATTAGAGGCATTGATCCA+AGG | - | chr8.2:14872765-14872784 | MS.gene61196:intron | 40.0% |
AAAATCACGACGGTCCAGTT+TGG | + | chr8.2:14872290-14872309 | None:intergenic | 45.0% | |
AACGACCTTCGACAAACCTA+CGG | + | chr8.2:14872661-14872680 | None:intergenic | 45.0% | |
AACGTATACCCCAAGTGAGA+TGG | - | chr8.2:14871833-14871852 | MS.gene61196:CDS | 45.0% | |
AATTCCCCCCAAAATCACGA+CGG | + | chr8.2:14872300-14872319 | None:intergenic | 45.0% | |
AGTATGCTGGAACAGATGTC+GGG | - | chr8.2:14874317-14874336 | MS.gene61196:CDS | 45.0% | |
ATCCATGGGTGCAGTGTATT+GGG | + | chr8.2:14874217-14874236 | None:intergenic | 45.0% | |
ATCTCACTTGGGGTATACGT+TGG | + | chr8.2:14871834-14871853 | None:intergenic | 45.0% | |
ATCTGCATTAGACATTGCCG+TGG | - | chr8.2:14872480-14872499 | MS.gene61196:CDS | 45.0% | |
CAACAGCGAACTTAACTGCA+TGG | + | chr8.2:14874154-14874173 | None:intergenic | 45.0% | |
CAAGTGAGATGGCAATGATG+AGG | - | chr8.2:14871844-14871863 | MS.gene61196:CDS | 45.0% | |
CATCATTGCCATCTCACTTG+GGG | + | chr8.2:14871844-14871863 | None:intergenic | 45.0% | |
CATTAGACATTGCCGTGGTT+TGG | - | chr8.2:14872485-14872504 | MS.gene61196:CDS | 45.0% | |
CCAACAATCGTAAGTGTGGT+AGG | + | chr8.2:14874014-14874033 | None:intergenic | 45.0% | |
CCGAGGTTCATTACTTCATC+AGG | - | chr8.2:14873768-14873787 | MS.gene61196:CDS | 45.0% | |
CCTACCACACTTACGATTGT+TGG | - | chr8.2:14874011-14874030 | MS.gene61196:CDS | 45.0% | |
CTCATCATTGCCATCTCACT+TGG | + | chr8.2:14871846-14871865 | None:intergenic | 45.0% | |
CTTACGATTGTTGGTCCGAA+CGG | - | chr8.2:14874020-14874039 | MS.gene61196:CDS | 45.0% | |
GAACTTTAGGTCACATCTCC+AGG | + | chr8.2:14872576-14872595 | None:intergenic | 45.0% | |
GAGTATGCTGGAACAGATGT+CGG | - | chr8.2:14874316-14874335 | MS.gene61196:CDS | 45.0% | |
GTAAGTGTGGTAGGTTTCTG+TGG | + | chr8.2:14874005-14874024 | None:intergenic | 45.0% | |
GTTTCTGTGGCAAGGATTTC+TGG | + | chr8.2:14873992-14874011 | None:intergenic | 45.0% | |
TATCCATGGGTGCAGTGTAT+TGG | + | chr8.2:14874218-14874237 | None:intergenic | 45.0% | |
TGCAGTGTATTGGGGTATGT+CGG | + | chr8.2:14874208-14874227 | None:intergenic | 45.0% | |
TGTTTAACCAGACTTTGCCG+TGG | - | chr8.2:14873955-14873974 | MS.gene61196:CDS | 45.0% | |
! | AAACTGGACCGTCGTGATTT+TGG | - | chr8.2:14872289-14872308 | MS.gene61196:CDS | 45.0% |
! | AACTGGACCGTCGTGATTTT+GGG | - | chr8.2:14872290-14872309 | MS.gene61196:CDS | 45.0% |
! | GAGGCGACAAGCTTTATATG+AGG | - | chr8.2:14872113-14872132 | MS.gene61196:CDS | 45.0% |
! | GGGTCTATCTGAAATATGCG+GGG | - | chr8.2:14873664-14873683 | MS.gene61196:intron | 45.0% |
! | TATATACCAAAGTGCCCGAG+AGG | + | chr8.2:14873854-14873873 | None:intergenic | 45.0% |
!! | ACAACATTGAGCTTGGTGCA+TGG | - | chr8.2:14872164-14872183 | MS.gene61196:intron | 45.0% |
!! | GAAAGGTTGGTATGGACTGA+AGG | - | chr8.2:14872135-14872154 | MS.gene61196:CDS | 45.0% |
!! | TCGTGATTTTGGGGGGAATT+TGG | - | chr8.2:14872300-14872319 | MS.gene61196:CDS | 45.0% |
!!! | TGTACGTTAGTTTTGTGCGG+TGG | - | chr8.2:14873315-14873334 | MS.gene61196:CDS | 45.0% |
AACCAGACTTTGCCGTGGTA+TGG | - | chr8.2:14873960-14873979 | MS.gene61196:CDS | 50.0% | |
AATGAACCTCGGCAACGCAA+GGG | + | chr8.2:14873760-14873779 | None:intergenic | 50.0% | |
ACCTCTGCGATGTGCAAATC+AGG | + | chr8.2:14874121-14874140 | None:intergenic | 50.0% | |
ACGACCTTCGACAAACCTAC+GGG | + | chr8.2:14872660-14872679 | None:intergenic | 50.0% | |
ACTTCGTCTGATGTCCTCTC+GGG | - | chr8.2:14873837-14873856 | MS.gene61196:CDS | 50.0% | |
AGGTCGTTCGATAGACCTTG+CGG | - | chr8.2:14872673-14872692 | MS.gene61196:intron | 50.0% | |
AGGTCTACTTCAGACAAGGC+TGG | - | chr8.2:14873601-14873620 | MS.gene61196:CDS | 50.0% | |
ATATATCCCTTGCGTTGCCG+AGG | - | chr8.2:14873751-14873770 | MS.gene61196:CDS | 50.0% | |
CAGTGGTCGATATGTGTACC+AGG | - | chr8.2:14874262-14874281 | MS.gene61196:CDS | 50.0% | |
CATCTCCATGTACAGCCGTT+CGG | + | chr8.2:14874038-14874057 | None:intergenic | 50.0% | |
CGCTTACAGAACCCAAACCA+CGG | + | chr8.2:14872500-14872519 | None:intergenic | 50.0% | |
CGGACCAACAATCGTAAGTG+TGG | + | chr8.2:14874018-14874037 | None:intergenic | 50.0% | |
CGGCAACGCAAGGGATATAT+CGG | + | chr8.2:14873751-14873770 | None:intergenic | 50.0% | |
CTGCATTTGTAGACGGCACA+GGG | + | chr8.2:14872742-14872761 | None:intergenic | 50.0% | |
GACTTCGTCTGATGTCCTCT+CGG | - | chr8.2:14873836-14873855 | MS.gene61196:CDS | 50.0% | |
GATAAGTCCTCAACCGAGAC+AGG | + | chr8.2:14872966-14872985 | None:intergenic | 50.0% | |
GATTTGCACATCGCAGAGGT+TGG | - | chr8.2:14874121-14874140 | MS.gene61196:intron | 50.0% | |
GGACAATATGTAAGGCCCGT+AGG | - | chr8.2:14872642-14872661 | MS.gene61196:intron | 50.0% | |
GGCAAGGTCTACTTCAGACA+AGG | - | chr8.2:14873597-14873616 | MS.gene61196:CDS | 50.0% | |
GTGAGGTCCGTATTTATCGG+AGG | + | chr8.2:14872530-14872549 | None:intergenic | 50.0% | |
TAATGAACCTCGGCAACGCA+AGG | + | chr8.2:14873761-14873780 | None:intergenic | 50.0% | |
TCCATGGGTGCAGTGTATTG+GGG | + | chr8.2:14874216-14874235 | None:intergenic | 50.0% | |
TCTGCATTTGTAGACGGCAC+AGG | + | chr8.2:14872743-14872762 | None:intergenic | 50.0% | |
TGTGGTAGGTTTCTGTGGCA+AGG | + | chr8.2:14874000-14874019 | None:intergenic | 50.0% | |
TTCGATAGACCTTGCGGTCA+CGG | - | chr8.2:14872679-14872698 | MS.gene61196:intron | 50.0% | |
TTCTGGCAGAAGCCATACCA+CGG | + | chr8.2:14873975-14873994 | None:intergenic | 50.0% | |
TTGGGGTATGTCGGAAACCA+AGG | + | chr8.2:14874199-14874218 | None:intergenic | 50.0% | |
! | ACCTGATTTGCACATCGCAG+AGG | - | chr8.2:14874117-14874136 | MS.gene61196:intron | 50.0% |
! | ACTGGACCGTCGTGATTTTG+GGG | - | chr8.2:14872291-14872310 | MS.gene61196:CDS | 50.0% |
! | TTGCAAGGCGAAGAGTATGC+TGG | - | chr8.2:14874304-14874323 | MS.gene61196:CDS | 50.0% |
!! | ACTTCAGACAAGGCTGGTCT+AGG | - | chr8.2:14873607-14873626 | MS.gene61196:CDS | 50.0% |
!! | CTTCAGACAAGGCTGGTCTA+GGG | - | chr8.2:14873608-14873627 | MS.gene61196:CDS | 50.0% |
AAACCTATGGTCAGCGGCAG+TGG | - | chr8.2:14874245-14874264 | MS.gene61196:CDS | 55.0% | |
AAGGCCCGTAGGTTTGTCGA+AGG | - | chr8.2:14872653-14872672 | MS.gene61196:intron | 55.0% | |
ACCCCAATACACTGCACCCA+TGG | - | chr8.2:14874212-14874231 | MS.gene61196:intron | 55.0% | |
AGCCATACCACGGCAAAGTC+TGG | + | chr8.2:14873965-14873984 | None:intergenic | 55.0% | |
GAGGTTCGACTGTATCGCAG+AGG | - | chr8.2:14872094-14872113 | MS.gene61196:CDS | 55.0% | |
TGATGTCCTCTCGGGCACTT+TGG | - | chr8.2:14873845-14873864 | MS.gene61196:CDS | 55.0% | |
TTGGTCCGAACGGCTGTACA+TGG | - | chr8.2:14874030-14874049 | MS.gene61196:CDS | 55.0% | |
! | ACATCGCAGAGGTTGGTTGC+AGG | - | chr8.2:14874128-14874147 | MS.gene61196:intron | 55.0% |
! | CTGGACCGTCGTGATTTTGG+GGG | - | chr8.2:14872292-14872311 | MS.gene61196:CDS | 55.0% |
! | TGGACCGTCGTGATTTTGGG+GGG | - | chr8.2:14872293-14872312 | MS.gene61196:CDS | 55.0% |
!! | ACAAGGCTGGTCTAGGGTGA+AGG | - | chr8.2:14873614-14873633 | MS.gene61196:CDS | 55.0% |
ACGACCTCGATCCTGTGCGA+AGG | - | chr8.2:14872938-14872957 | MS.gene61196:intron | 60.0% | |
CGACCTCGATCCTGTGCGAA+GGG | - | chr8.2:14872939-14872958 | MS.gene61196:intron | 60.0% | |
CTGTGCGAAGGGACCTGTCT+CGG | - | chr8.2:14872950-14872969 | MS.gene61196:intron | 60.0% | |
GAAGGGACCTGTCTCGGTTG+AGG | - | chr8.2:14872956-14872975 | MS.gene61196:intron | 60.0% | |
GATAGACCTTGCGGTCACGG+AGG | - | chr8.2:14872682-14872701 | MS.gene61196:intron | 60.0% | |
TCTTCTCCTCCGTGACCGCA+AGG | + | chr8.2:14872691-14872710 | None:intergenic | 60.0% | |
CGACCACTGCCGCTGACCAT+AGG | + | chr8.2:14874251-14874270 | None:intergenic | 65.0% | |
CGAGACAGGTCCCTTCGCAC+AGG | + | chr8.2:14872952-14872971 | None:intergenic | 65.0% | |
GGTCCCTTCGCACAGGATCG+AGG | + | chr8.2:14872945-14872964 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 14871792 | 14874343 | 14871792 | ID=MS.gene61196 |
chr8.2 | mRNA | 14871792 | 14874343 | 14871792 | ID=MS.gene61196.t1;Parent=MS.gene61196 |
chr8.2 | exon | 14874239 | 14874343 | 14874239 | ID=MS.gene61196.t1.exon1;Parent=MS.gene61196.t1 |
chr8.2 | CDS | 14874239 | 14874343 | 14874239 | ID=cds.MS.gene61196.t1;Parent=MS.gene61196.t1 |
chr8.2 | exon | 14873751 | 14874134 | 14873751 | ID=MS.gene61196.t1.exon2;Parent=MS.gene61196.t1 |
chr8.2 | CDS | 14873751 | 14874134 | 14873751 | ID=cds.MS.gene61196.t1;Parent=MS.gene61196.t1 |
chr8.2 | exon | 14873308 | 14873644 | 14873308 | ID=MS.gene61196.t1.exon3;Parent=MS.gene61196.t1 |
chr8.2 | CDS | 14873308 | 14873644 | 14873308 | ID=cds.MS.gene61196.t1;Parent=MS.gene61196.t1 |
chr8.2 | exon | 14873127 | 14873206 | 14873127 | ID=MS.gene61196.t1.exon4;Parent=MS.gene61196.t1 |
chr8.2 | CDS | 14873127 | 14873206 | 14873127 | ID=cds.MS.gene61196.t1;Parent=MS.gene61196.t1 |
chr8.2 | exon | 14872269 | 14872655 | 14872269 | ID=MS.gene61196.t1.exon5;Parent=MS.gene61196.t1 |
chr8.2 | CDS | 14872269 | 14872655 | 14872269 | ID=cds.MS.gene61196.t1;Parent=MS.gene61196.t1 |
chr8.2 | exon | 14871792 | 14872169 | 14871792 | ID=MS.gene61196.t1.exon6;Parent=MS.gene61196.t1 |
chr8.2 | CDS | 14871792 | 14872169 | 14871792 | ID=cds.MS.gene61196.t1;Parent=MS.gene61196.t1 |
Gene Sequence |
Protein sequence |