Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61405.t1 | XP_004495541.1 | 93.2 | 793 | 54 | 0 | 1 | 793 | 1 | 793 | 0.00E+00 | 1397.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61405.t1 | Q55GS2 | 40.2 | 557 | 308 | 11 | 4 | 558 | 2 | 535 | 1.7e-111 | 405.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61405.t1 | A0A1S2XWA4 | 93.2 | 793 | 54 | 0 | 1 | 793 | 1 | 793 | 0.0e+00 | 1397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61405.t1 | MTR_6g086565 | 98.496 | 798 | 9 | 1 | 1 | 795 | 1 | 798 | 0.0 | 1598 |
| MS.gene61405.t1 | MTR_6g086565 | 98.869 | 619 | 7 | 0 | 1 | 619 | 1 | 619 | 0.0 | 1252 |
| MS.gene61405.t1 | MTR_1g078330 | 87.895 | 190 | 23 | 0 | 1 | 190 | 1 | 190 | 2.51e-118 | 355 |
| MS.gene61405.t1 | MTR_1g078370 | 75.362 | 207 | 48 | 1 | 587 | 793 | 1 | 204 | 5.27e-91 | 285 |
| MS.gene61405.t1 | MTR_4g030910 | 22.995 | 561 | 367 | 14 | 58 | 575 | 96 | 634 | 2.73e-26 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61405.t1 | AT2G40730 | 78.375 | 800 | 163 | 7 | 1 | 793 | 1 | 797 | 0.0 | 1202 |
| MS.gene61405.t1 | AT1G22870 | 21.165 | 515 | 344 | 10 | 58 | 530 | 96 | 590 | 6.64e-19 | 92.4 |
| MS.gene61405.t1 | AT1G71410 | 20.940 | 468 | 309 | 10 | 58 | 483 | 96 | 544 | 7.23e-19 | 92.4 |
| MS.gene61405.t1 | AT1G71410 | 20.940 | 468 | 309 | 10 | 58 | 483 | 96 | 544 | 7.23e-19 | 92.4 |
| MS.gene61405.t1 | AT1G22870 | 21.165 | 515 | 344 | 10 | 58 | 530 | 96 | 590 | 8.33e-19 | 92.0 |
| MS.gene61405.t1 | AT1G22870 | 21.698 | 424 | 299 | 7 | 133 | 530 | 9 | 425 | 1.53e-17 | 87.8 |
| MS.gene61405.t1 | AT1G22870 | 19.876 | 322 | 243 | 4 | 223 | 530 | 49 | 369 | 6.81e-11 | 66.2 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAACCTTGGTGGAATTT+TGG | 0.064969 | 6.3:-79952566 | None:intergenic |
| TTAGCTTCTGCCCTTGAATT+TGG | 0.180640 | 6.3:+79938835 | MS.gene61405:CDS |
| CTCCAACATATTGAACAATT+TGG | 0.184198 | 6.3:+79939084 | MS.gene61405:CDS |
| ATCCGCTGAGCACCTAATTT+TGG | 0.188714 | 6.3:-79952775 | None:intergenic |
| TTTGACTGCATTGTTGAAAA+TGG | 0.188813 | 6.3:+79938876 | MS.gene61405:CDS |
| CTCCATGGGCCATTGATTCT+TGG | 0.193517 | 6.3:+79936693 | MS.gene61405:CDS |
| TGAAGAAATGACAAAATATT+TGG | 0.211866 | 6.3:-79935297 | None:intergenic |
| ATCCACCAACAACTTCTTTC+AGG | 0.230681 | 6.3:-79934759 | None:intergenic |
| TTATCTGAAAGTGGCATTAC+AGG | 0.240664 | 6.3:-79935384 | None:intergenic |
| GGAAGCTGCTCTGCTAAATT+TGG | 0.248475 | 6.3:-79938685 | None:intergenic |
| ACTTGATTATTCAGGCATTA+TGG | 0.257982 | 6.3:+79940927 | MS.gene61405:intron |
| TTTAAAGGTCTTGATGTTCT+TGG | 0.262413 | 6.3:-79952634 | None:intergenic |
| CCAAGTAAACTTGCATTTCC+TGG | 0.262803 | 6.3:-79945629 | None:intergenic |
| AAACCTGCTGCTCCAAAATT+AGG | 0.271088 | 6.3:+79952763 | MS.gene61405:CDS |
| CTGTCTCAAAGGACCTTGTC+TGG | 0.286397 | 6.3:+79940243 | MS.gene61405:CDS |
| CCAGGAAATGCAAGTTTACT+TGG | 0.288202 | 6.3:+79945629 | MS.gene61405:CDS |
| TCCATGGGCCATTGATTCTT+GGG | 0.291032 | 6.3:+79936694 | MS.gene61405:CDS |
| ACCCTTCCGCTTGGGGCTCC+TGG | 0.295659 | 6.3:+79934827 | MS.gene61405:CDS |
| CTTTGTCTGTTGCAGGTTCA+TGG | 0.299338 | 6.3:+79936101 | MS.gene61405:intron |
| GTTGTCGAATTCAAATTTAA+AGG | 0.302494 | 6.3:-79952649 | None:intergenic |
| CTGAGTAGCCGCTGGTAATC+TGG | 0.310087 | 6.3:-79937758 | None:intergenic |
| CATTGTTGAAAATGGGTTCC+TGG | 0.312737 | 6.3:+79938884 | MS.gene61405:CDS |
| TCTCAAGTCCATGTTAGTTC+TGG | 0.320181 | 6.3:+79939327 | MS.gene61405:CDS |
| CTTTCTATTATAGACAAATA+TGG | 0.328878 | 6.3:+79945565 | MS.gene61405:intron |
| GCCACTTTCAGATAAGATTC+AGG | 0.330183 | 6.3:+79935392 | MS.gene61405:CDS |
| CTTAGCAGCTGGCCGAGGTC+GGG | 0.342150 | 6.3:+79952735 | MS.gene61405:CDS |
| AAACAGTGATGTTCGATCTA+AGG | 0.342598 | 6.3:+79941686 | MS.gene61405:intron |
| TCAGATAAGATTCAGGAGTT+AGG | 0.347337 | 6.3:+79935399 | MS.gene61405:CDS |
| CGAACCTTACCCTTCCGCTT+GGG | 0.349078 | 6.3:+79934819 | MS.gene61405:CDS |
| AAAGAAGTTGTTGGTGGATC+TGG | 0.357725 | 6.3:+79934763 | MS.gene61405:CDS |
| GATGGAAGTTTATCAATTCC+AGG | 0.362464 | 6.3:+79945611 | MS.gene61405:CDS |
| AGCTCAAGCTGTTGATGAAC+AGG | 0.365464 | 6.3:+79939119 | MS.gene61405:CDS |
| CGCCTACATCAACGGATGGC+TGG | 0.368401 | 6.3:+79948145 | MS.gene61405:CDS |
| CCGACCTCGGCCAGCTGCTA+AGG | 0.373064 | 6.3:-79952734 | None:intergenic |
| CAGCTCCTGCGCCCACTACA+AGG | 0.373259 | 6.3:+79952704 | MS.gene61405:CDS |
| GCCTACATCAACGGATGGCT+GGG | 0.373845 | 6.3:+79948146 | MS.gene61405:CDS |
| GGTAGAGACAATACATTTCA+TGG | 0.374181 | 6.3:+79938609 | MS.gene61405:CDS |
| CTAATCTATGAGCTGTTCTC+TGG | 0.378549 | 6.3:+79937531 | MS.gene61405:CDS |
| GTTTACCCTCATGTTGCTAC+TGG | 0.382745 | 6.3:+79939268 | MS.gene61405:CDS |
| AATTTCATTGATGTCATAGT+TGG | 0.383892 | 6.3:-79940968 | None:intergenic |
| GCCATTGATTCTTGGGGAAT+GGG | 0.389642 | 6.3:+79936701 | MS.gene61405:CDS |
| TAAGGTTCGCCGATGTTGTA+TGG | 0.391413 | 6.3:-79934805 | None:intergenic |
| AAAGCATCTATCGAAGTTAC+AGG | 0.393427 | 6.3:+79940275 | MS.gene61405:CDS |
| CGGATAAACCGGACATCATC+AGG | 0.394990 | 6.3:+79952793 | MS.gene61405:CDS |
| CAGGGATGAATATTATGCTT+GGG | 0.398038 | 6.3:+79935950 | MS.gene61405:intron |
| ATTGTGAGTACAACAACATT+AGG | 0.400000 | 6.3:-79941006 | None:intergenic |
| GCAAAGAGTTTAATTATTGT+TGG | 0.401711 | 6.3:-79939030 | None:intergenic |
| CGGTGTTAATTTCAGGATGA+TGG | 0.402052 | 6.3:+79934931 | MS.gene61405:intron |
| CTCCAAATTGTTCAATATGT+TGG | 0.412810 | 6.3:-79939086 | None:intergenic |
| TCAAGGGCAGAAGCTAATAA+AGG | 0.423515 | 6.3:-79938829 | None:intergenic |
| TTCAACAATGCAGTCAAAGC+AGG | 0.425072 | 6.3:-79938871 | None:intergenic |
| TCGGCCAGCTGCTAAGGGCC+TGG | 0.432686 | 6.3:-79952728 | None:intergenic |
| GCATGGTGGTCAGTGAAATC+TGG | 0.432933 | 6.3:-79948114 | None:intergenic |
| TTAGCAGCTGGCCGAGGTCG+GGG | 0.437675 | 6.3:+79952736 | MS.gene61405:CDS |
| GATGTTCTATCAGAGTTTGA+TGG | 0.438526 | 6.3:+79936185 | MS.gene61405:CDS |
| CAAATAATAAATCACCTGTC+TGG | 0.440381 | 6.3:-79941033 | None:intergenic |
| AGGGCCAGGCCCTTAGCAGC+TGG | 0.442542 | 6.3:+79952724 | MS.gene61405:CDS |
| CTGGCCCTTGTAGTGGGCGC+AGG | 0.445959 | 6.3:-79952709 | None:intergenic |
| GGCCATTGATTCTTGGGGAA+TGG | 0.447612 | 6.3:+79936700 | MS.gene61405:CDS |
| GACACGGACAGCTCGATCAT+TGG | 0.450921 | 6.3:-79939055 | None:intergenic |
| TCTTCATCCCTGCTCAACCT+TGG | 0.453545 | 6.3:-79952577 | None:intergenic |
| CCTTAGCAGCTGGCCGAGGT+CGG | 0.453563 | 6.3:+79952734 | MS.gene61405:CDS |
| AAATTCCACCAAGGTTGAGC+AGG | 0.454216 | 6.3:+79952569 | MS.gene61405:CDS |
| CTAGAACTCACAGAAGCAAC+TGG | 0.456552 | 6.3:-79946998 | None:intergenic |
| ATGAGCTCCTTGACTCTAAA+GGG | 0.459180 | 6.3:+79946956 | MS.gene61405:CDS |
| TAGGTGCTCAGCGGATAAAC+CGG | 0.460603 | 6.3:+79952782 | MS.gene61405:CDS |
| AGGCCCTTAGCAGCTGGCCG+AGG | 0.465336 | 6.3:+79952730 | MS.gene61405:CDS |
| ACATCCCTCCTGATGATGTC+CGG | 0.465866 | 6.3:-79952801 | None:intergenic |
| TTTGAAAGATAGTGTTGAGA+AGG | 0.467964 | 6.3:+79938642 | MS.gene61405:CDS |
| ATTGATGTCATAGTTGGAAC+TGG | 0.469305 | 6.3:-79940962 | None:intergenic |
| ATTCAGGAGTTAGGTCTTGA+AGG | 0.470304 | 6.3:+79935408 | MS.gene61405:CDS |
| TGTTGTTGTCACGCCAACTT+TGG | 0.470386 | 6.3:+79936142 | MS.gene61405:CDS |
| GCGAACCTTACCCTTCCGCT+TGG | 0.471772 | 6.3:+79934818 | MS.gene61405:CDS |
| CCGTTGATGTAGGCGATGTA+GGG | 0.473316 | 6.3:-79948137 | None:intergenic |
| CATTAGAAGATGTTGGTGTA+AGG | 0.476759 | 6.3:-79947024 | None:intergenic |
| CCGTGGCTAAATGTCCATCC+TGG | 0.480053 | 6.3:-79934993 | None:intergenic |
| AAGGGCCTGGCCCTTGTAGT+GGG | 0.480173 | 6.3:-79952715 | None:intergenic |
| ATGTTCTATCAGAGTTTGAT+GGG | 0.482527 | 6.3:+79936186 | MS.gene61405:CDS |
| AAGGGCAAGCCTTCTGATCA+TGG | 0.482553 | 6.3:+79946974 | MS.gene61405:CDS |
| GTTGTTGGTGGATCTGGAAC+TGG | 0.482994 | 6.3:+79934769 | MS.gene61405:CDS |
| CTGCGCCCACTACAAGGGCC+AGG | 0.483015 | 6.3:+79952710 | MS.gene61405:CDS |
| CATTTAGCCACGGGTCGTAA+TGG | 0.484477 | 6.3:+79935003 | MS.gene61405:CDS |
| TTGACTGCATTGTTGAAAAT+GGG | 0.485246 | 6.3:+79938877 | MS.gene61405:CDS |
| GGTTCATGGCAATGTTTGCT+TGG | 0.485983 | 6.3:+79936115 | MS.gene61405:intron |
| TCCTGAATCTTATCTGAAAG+TGG | 0.486236 | 6.3:-79935393 | None:intergenic |
| CAACCTGTTTCACAGACAAA+AGG | 0.486565 | 6.3:+79948303 | MS.gene61405:CDS |
| CGACCTCGGCCAGCTGCTAA+GGG | 0.488359 | 6.3:-79952733 | None:intergenic |
| GGTCTTGATGTTCTTGGAGC+GGG | 0.490257 | 6.3:-79952628 | None:intergenic |
| GTTGGCTTTGTTTCTTCAAG+TGG | 0.490301 | 6.3:-79948234 | None:intergenic |
| TATGAGCTCCTTGACTCTAA+AGG | 0.491816 | 6.3:+79946955 | MS.gene61405:CDS |
| TAAGGGCCTGGCCCTTGTAG+TGG | 0.492890 | 6.3:-79952716 | None:intergenic |
| CAGCAGCTGAACCAAATTCA+AGG | 0.493179 | 6.3:-79938846 | None:intergenic |
| TAAATGTCCATCCTGGGCAT+TGG | 0.493398 | 6.3:-79934986 | None:intergenic |
| TTGTCACGCCAACTTTGGAC+TGG | 0.493752 | 6.3:+79936147 | MS.gene61405:CDS |
| TCGTCAGATTGTGTTAAAGA+AGG | 0.495220 | 6.3:+79938708 | MS.gene61405:CDS |
| CCTACATCAACGGATGGCTG+GGG | 0.495900 | 6.3:+79948147 | MS.gene61405:CDS |
| GGGATGAAGATGAAGATTTG+TGG | 0.496658 | 6.3:+79952590 | MS.gene61405:CDS |
| ATAATTGATTGTTACCTTGG+AGG | 0.496898 | 6.3:-79934866 | None:intergenic |
| GCAGGGATGAATATTATGCT+TGG | 0.497318 | 6.3:+79935949 | MS.gene61405:intron |
| TCCGTTGATGTAGGCGATGT+AGG | 0.497786 | 6.3:-79948138 | None:intergenic |
| CAACTAATGATGATGATCCA+TGG | 0.500400 | 6.3:+79952671 | MS.gene61405:CDS |
| TCTTGGAGCGGGAGCTGCTA+TGG | 0.501239 | 6.3:-79952617 | None:intergenic |
| ACCCATTCCCCAAGAATCAA+TGG | 0.501604 | 6.3:-79936702 | None:intergenic |
| TCATCCCTGCTCAACCTTGG+TGG | 0.502638 | 6.3:-79952574 | None:intergenic |
| TGTGAAACAGGTTGAACAAC+TGG | 0.506071 | 6.3:-79948294 | None:intergenic |
| TTTCCACCTGCTAGAGGAGC+AGG | 0.506104 | 6.3:+79940812 | MS.gene61405:CDS |
| GGAGCTGCAATGGCAGCCCA+TGG | 0.507768 | 6.3:-79952688 | None:intergenic |
| CTAATACCTGCTCCTCTAGC+AGG | 0.508317 | 6.3:-79940818 | None:intergenic |
| AGCCAGGAGCCCCAAGCGGA+AGG | 0.509517 | 6.3:-79934829 | None:intergenic |
| GAACTCCTCAGCTGAAAGCC+AGG | 0.510223 | 6.3:-79938902 | None:intergenic |
| GAGAAGTCTGACCTTGGGAA+TGG | 0.510862 | 6.3:-79937595 | None:intergenic |
| ACAAATATGGCAGAGACTAC+TGG | 0.513244 | 6.3:+79945578 | MS.gene61405:CDS |
| GCTTGAATGTTAGTAAGAGC+TGG | 0.513816 | 6.3:-79948258 | None:intergenic |
| GAACCTTACCCTTCCGCTTG+GGG | 0.515759 | 6.3:+79934820 | MS.gene61405:CDS |
| AAATTCCTGAAAGAAGTTGT+TGG | 0.517801 | 6.3:+79934754 | MS.gene61405:CDS |
| TGGAGTTTCCAGTCCAAAGT+TGG | 0.518208 | 6.3:-79936155 | None:intergenic |
| CGGAGCTAGCAAAATCCGAC+TGG | 0.519464 | 6.3:+79936651 | MS.gene61405:CDS |
| CAGGTTTGGCTCCCCGACCT+CGG | 0.519595 | 6.3:-79952747 | None:intergenic |
| GGATGAAGATGAAGATTTGT+GGG | 0.520644 | 6.3:+79952591 | MS.gene61405:CDS |
| ATCATTAAGCATACCTGAGC+TGG | 0.523577 | 6.3:-79947047 | None:intergenic |
| CATGTTAGTTCTGGCTCCAA+AGG | 0.527967 | 6.3:+79939336 | MS.gene61405:CDS |
| GACATCCTCTACGCAAATGC+TGG | 0.529946 | 6.3:+79936217 | MS.gene61405:CDS |
| ACAAATACAACTATCTTGCT+AGG | 0.530207 | 6.3:+79940602 | MS.gene61405:CDS |
| ATTGTTCAATATGTTGGAGA+AGG | 0.530324 | 6.3:-79939080 | None:intergenic |
| GAGCCCCAAGCGGAAGGGTA+AGG | 0.530811 | 6.3:-79934823 | None:intergenic |
| CCATGGGCCATTGATTCTTG+GGG | 0.532546 | 6.3:+79936695 | MS.gene61405:CDS |
| ATTTCAGGATGATGGTTCAC+CGG | 0.534597 | 6.3:+79934939 | MS.gene61405:intron |
| CAGGAAATGCAAGTTTACTT+GGG | 0.535552 | 6.3:+79945630 | MS.gene61405:CDS |
| GGGTTCCTGGCTTTCAGCTG+AGG | 0.537536 | 6.3:+79938897 | MS.gene61405:CDS |
| TTCCTGAAAGAAGTTGTTGG+TGG | 0.541191 | 6.3:+79934757 | MS.gene61405:CDS |
| CTACATCAACGGATGGCTGG+GGG | 0.541390 | 6.3:+79948148 | MS.gene61405:CDS |
| GCCAGGAGCCCCAAGCGGAA+GGG | 0.542568 | 6.3:-79934828 | None:intergenic |
| GATGTATTTAATCTACGAGA+AGG | 0.543062 | 6.3:-79937788 | None:intergenic |
| TCAACAATGCAGTCAAAGCA+GGG | 0.543212 | 6.3:-79938870 | None:intergenic |
| CCCTACATCGCCTACATCAA+CGG | 0.545671 | 6.3:+79948137 | MS.gene61405:CDS |
| ACACGGATAGGTGCTGTTGA+AGG | 0.546664 | 6.3:-79948081 | None:intergenic |
| AGCTGAGGAGTTCCGTGTCA+AGG | 0.546667 | 6.3:+79938912 | MS.gene61405:CDS |
| AGGCTTGCCCTTTAGAGTCA+AGG | 0.549491 | 6.3:-79946963 | None:intergenic |
| AGTGGGCGCAGGAGCTGCAA+TGG | 0.552530 | 6.3:-79952698 | None:intergenic |
| CTGCTAAATTTGGAAGCTTG+CGG | 0.553281 | 6.3:-79938675 | None:intergenic |
| ATCATTATTTAAGAAGCTCA+CGG | 0.554036 | 6.3:-79935994 | None:intergenic |
| TGCTCCTCTAGCAGGTGGAA+AGG | 0.555846 | 6.3:-79940810 | None:intergenic |
| AAGGTTCGCCGATGTTGTAT+GGG | 0.556759 | 6.3:-79934804 | None:intergenic |
| TACTCACAATTGATCCAGAC+AGG | 0.558900 | 6.3:+79941019 | MS.gene61405:CDS |
| CTGATAGAACATCAAAAGCA+TGG | 0.560392 | 6.3:-79936175 | None:intergenic |
| AGCTCCTGCGCCCACTACAA+GGG | 0.562278 | 6.3:+79952705 | MS.gene61405:CDS |
| ATTGCAAGCTACTTAAACGA+AGG | 0.562326 | 6.3:+79940629 | MS.gene61405:CDS |
| CTTTGGAGCCAGAACTAACA+TGG | 0.562633 | 6.3:-79939335 | None:intergenic |
| TTGCAAGCTACTTAAACGAA+GGG | 0.564838 | 6.3:+79940630 | MS.gene61405:CDS |
| CATAATTGCAGCTGTCTCAA+AGG | 0.565208 | 6.3:+79940232 | MS.gene61405:intron |
| CGTGGCTAAATGTCCATCCT+GGG | 0.570200 | 6.3:-79934992 | None:intergenic |
| ACATCTTCTAATGCCAGCTC+AGG | 0.570241 | 6.3:+79947034 | MS.gene61405:CDS |
| ACTACTGGTGGTGCAAGCGA+TGG | 0.572450 | 6.3:+79945593 | MS.gene61405:CDS |
| CTAACATTCAAGCAGCTCAA+AGG | 0.572637 | 6.3:+79948268 | MS.gene61405:CDS |
| TAATTAAGAAGTCTCCTCCA+TGG | 0.572719 | 6.3:+79936678 | MS.gene61405:CDS |
| CTTCTTAATTACAGCCCAGT+CGG | 0.573033 | 6.3:-79936666 | None:intergenic |
| ATGTTAGTAAGAGCTGGAGT+TGG | 0.578383 | 6.3:-79948252 | None:intergenic |
| ATTAGAAGATGTTGGTGTAA+GGG | 0.578476 | 6.3:-79947023 | None:intergenic |
| TGTCTCAAAGGACCTTGTCT+GGG | 0.579463 | 6.3:+79940244 | MS.gene61405:CDS |
| CAGGATGGACATTTAGCCAC+GGG | 0.579765 | 6.3:+79934994 | MS.gene61405:CDS |
| CTGAAAATGACAAGGATGGG+TGG | 0.581469 | 6.3:+79948199 | MS.gene61405:CDS |
| TCATCATCGCGGTACCTCCA+AGG | 0.585096 | 6.3:+79934852 | MS.gene61405:CDS |
| AAGTCTGACCTTGGGAATGG+AGG | 0.585606 | 6.3:-79937592 | None:intergenic |
| AACCTGAAAATGACAAGGAT+GGG | 0.586228 | 6.3:+79948196 | MS.gene61405:CDS |
| ATTATCTGGAACCAATGCCC+AGG | 0.586298 | 6.3:+79934975 | MS.gene61405:CDS |
| CCCCAGCCATCCGTTGATGT+AGG | 0.586559 | 6.3:-79948147 | None:intergenic |
| GCGTGGAACTGAGTAGCCGC+TGG | 0.590412 | 6.3:-79937766 | None:intergenic |
| AACTAATGATGATGATCCAT+GGG | 0.594078 | 6.3:+79952672 | MS.gene61405:CDS |
| TCTGGAACCAATGCCCAGGA+TGG | 0.595289 | 6.3:+79934979 | MS.gene61405:CDS |
| TTTCCATTCAGCAATATGCA+TGG | 0.596821 | 6.3:+79936603 | MS.gene61405:intron |
| GCAACTGGACCATGATCAGA+AGG | 0.597464 | 6.3:-79946983 | None:intergenic |
| GGTACCGCGATGATGAAGCC+AGG | 0.599637 | 6.3:-79934845 | None:intergenic |
| ATGTAGGCGATGTAGGGGCA+TGG | 0.600990 | 6.3:-79948131 | None:intergenic |
| AATTAAGAAGTCTCCTCCAT+GGG | 0.608185 | 6.3:+79936679 | MS.gene61405:CDS |
| AGGGATGAATATTATGCTTG+GGG | 0.608296 | 6.3:+79935951 | MS.gene61405:intron |
| CCCCAAGAATCAATGGCCCA+TGG | 0.613929 | 6.3:-79936695 | None:intergenic |
| AATTCCACCAAGGTTGAGCA+GGG | 0.616045 | 6.3:+79952570 | MS.gene61405:CDS |
| AATTATTAGTTACCTTGACA+CGG | 0.618397 | 6.3:-79938924 | None:intergenic |
| GATACCTTTCCACCTGCTAG+AGG | 0.619442 | 6.3:+79940806 | MS.gene61405:CDS |
| AGCAGCTGAACCAAATTCAA+GGG | 0.620239 | 6.3:-79938845 | None:intergenic |
| AATTACCAGCATTTGCGTAG+AGG | 0.620808 | 6.3:-79936222 | None:intergenic |
| GAACCTGAAAATGACAAGGA+TGG | 0.621311 | 6.3:+79948195 | MS.gene61405:CDS |
| TATGTTGGAGAAGGCTGACA+CGG | 0.621891 | 6.3:-79939071 | None:intergenic |
| ATACCTGCTCCTCTAGCAGG+TGG | 0.623925 | 6.3:-79940815 | None:intergenic |
| GGTGTGGAATTTACACGGAT+AGG | 0.624750 | 6.3:-79948093 | None:intergenic |
| ACGGACAGCTCGATCATTGG+AGG | 0.625109 | 6.3:-79939052 | None:intergenic |
| ATTTAATCTACGAGAAGGCG+TGG | 0.626292 | 6.3:-79937783 | None:intergenic |
| CTCTGCTTCCAGATTACCAG+CGG | 0.627746 | 6.3:+79937750 | MS.gene61405:CDS |
| CGTTGATGTAGGCGATGTAG+GGG | 0.631501 | 6.3:-79948136 | None:intergenic |
| TACATCAACGGATGGCTGGG+GGG | 0.632203 | 6.3:+79948149 | MS.gene61405:CDS |
| GAGAAACCAGTAGCAACATG+AGG | 0.635595 | 6.3:-79939274 | None:intergenic |
| GCTAGAGAATGGAATTGATG+AGG | 0.638647 | 6.3:+79948173 | MS.gene61405:CDS |
| CAACAATGCAGTCAAAGCAG+GGG | 0.641805 | 6.3:-79938869 | None:intergenic |
| AGGTCTTGATGTTCTTGGAG+CGG | 0.642530 | 6.3:-79952629 | None:intergenic |
| TTCTTTAACACAATCTGACG+AGG | 0.643601 | 6.3:-79938706 | None:intergenic |
| CCAGGATGGACATTTAGCCA+CGG | 0.644282 | 6.3:+79934993 | MS.gene61405:CDS |
| TGAAAATGACAAGGATGGGT+GGG | 0.647528 | 6.3:+79948200 | MS.gene61405:CDS |
| TGCAACACAATACAAATCAA+CGG | 0.647901 | 6.3:+79936631 | MS.gene61405:CDS |
| ACATCGCCTACATCAACGGA+TGG | 0.648116 | 6.3:+79948141 | MS.gene61405:CDS |
| TAACACTGCCTCCATTCCCA+AGG | 0.650706 | 6.3:+79937584 | MS.gene61405:CDS |
| GGCAAAGCAACACTACGAGA+AGG | 0.650955 | 6.3:+79941740 | MS.gene61405:CDS |
| CTTTAATAATGACCCAGACA+AGG | 0.651418 | 6.3:-79940256 | None:intergenic |
| CTTGACACCATTACGACCCG+TGG | 0.651465 | 6.3:-79935010 | None:intergenic |
| GAAAGGTATCACGTAAAGCA+CGG | 0.652734 | 6.3:-79940793 | None:intergenic |
| AATCTGGTGTGGAATTTACA+CGG | 0.654113 | 6.3:-79948098 | None:intergenic |
| AGAAACCAGTAGCAACATGA+GGG | 0.659703 | 6.3:-79939273 | None:intergenic |
| GTGGTCAGTGAAATCTGGTG+TGG | 0.662798 | 6.3:-79948109 | None:intergenic |
| CTCCAAAATTAGGTGCTCAG+CGG | 0.663729 | 6.3:+79952773 | MS.gene61405:CDS |
| GGAGCTAGCAAAATCCGACT+GGG | 0.664324 | 6.3:+79936652 | MS.gene61405:CDS |
| ACATTCAAGCAGCTCAAAGG+CGG | 0.669990 | 6.3:+79948271 | MS.gene61405:CDS |
| ACATCAATGAAATTGCCACT+CGG | 0.673599 | 6.3:+79940977 | MS.gene61405:CDS |
| TGCAAGCTACTTAAACGAAG+GGG | 0.676042 | 6.3:+79940631 | MS.gene61405:CDS |
| GAGCTGGCATTAGAAGATGT+TGG | 0.677571 | 6.3:-79947031 | None:intergenic |
| CGCGACCCAAAATTCCACCA+AGG | 0.678187 | 6.3:+79952560 | MS.gene61405:CDS |
| AGAGATCTCCCATACAACAT+CGG | 0.678627 | 6.3:+79934796 | MS.gene61405:CDS |
| GGCTCCTGGCTTCATCATCG+CGG | 0.679973 | 6.3:+79934841 | MS.gene61405:CDS |
| TTTGAAGTTGAGCAAAACAG+AGG | 0.685379 | 6.3:+79937554 | MS.gene61405:CDS |
| ATAAACCGGACATCATCAGG+AGG | 0.688981 | 6.3:+79952796 | MS.gene61405:CDS |
| TAGGCGATGTAGGGGCATGG+TGG | 0.694318 | 6.3:-79948128 | None:intergenic |
| TCAAAGCTTATAGAAAACAG+TGG | 0.696006 | 6.3:+79937809 | MS.gene61405:CDS |
| TAAACCGGACATCATCAGGA+GGG | 0.696522 | 6.3:+79952797 | MS.gene61405:CDS |
| ATGAAGCCAGGAGCCCCAAG+CGG | 0.707465 | 6.3:-79934833 | None:intergenic |
| TGTTGTATGGGAGATCTCTG+AGG | 0.714551 | 6.3:-79934792 | None:intergenic |
| AACATTAGGAAGAATCCGAG+TGG | 0.723039 | 6.3:-79940992 | None:intergenic |
| GATGTCATAGTTGGAACTGG+TGG | 0.723344 | 6.3:-79940959 | None:intergenic |
| TAGGTCTTGAAGGTACACAA+AGG | 0.723793 | 6.3:+79935418 | MS.gene61405:CDS |
| CAAGAATCAATGGCCCATGG+AGG | 0.724818 | 6.3:-79936692 | None:intergenic |
| TGAGGAACCTGAAAATGACA+AGG | 0.725485 | 6.3:+79948191 | MS.gene61405:CDS |
| AATATGGCAGAGACTACTGG+TGG | 0.750355 | 6.3:+79945581 | MS.gene61405:CDS |
| GATGAAGATGAAGATTTGTG+GGG | 0.753066 | 6.3:+79952592 | MS.gene61405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 79934748 | 79952825 | 79934748 | ID=MS.gene61405 |
| chr6.3 | mRNA | 79934748 | 79952825 | 79934748 | ID=MS.gene61405.t1;Parent=MS.gene61405 |
| chr6.3 | exon | 79934748 | 79934873 | 79934748 | ID=MS.gene61405.t1.exon1;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79934748 | 79934873 | 79934748 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79934946 | 79935044 | 79934946 | ID=MS.gene61405.t1.exon2;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79934946 | 79935044 | 79934946 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79935288 | 79935439 | 79935288 | ID=MS.gene61405.t1.exon3;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79935288 | 79935439 | 79935288 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79935953 | 79936025 | 79935953 | ID=MS.gene61405.t1.exon4;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79935953 | 79936025 | 79935953 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79936116 | 79936238 | 79936116 | ID=MS.gene61405.t1.exon5;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79936116 | 79936238 | 79936116 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79936614 | 79936722 | 79936614 | ID=MS.gene61405.t1.exon6;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79936614 | 79936722 | 79936614 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79937526 | 79937605 | 79937526 | ID=MS.gene61405.t1.exon7;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79937526 | 79937605 | 79937526 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79937749 | 79937830 | 79937749 | ID=MS.gene61405.t1.exon8;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79937749 | 79937830 | 79937749 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79938590 | 79938729 | 79938590 | ID=MS.gene61405.t1.exon9;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79938590 | 79938729 | 79938590 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79938823 | 79938933 | 79938823 | ID=MS.gene61405.t1.exon10;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79938823 | 79938933 | 79938823 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79939024 | 79939140 | 79939024 | ID=MS.gene61405.t1.exon11;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79939024 | 79939140 | 79939024 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79939268 | 79939357 | 79939268 | ID=MS.gene61405.t1.exon12;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79939268 | 79939357 | 79939268 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79940243 | 79940296 | 79940243 | ID=MS.gene61405.t1.exon13;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79940243 | 79940296 | 79940243 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79940578 | 79940652 | 79940578 | ID=MS.gene61405.t1.exon14;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79940578 | 79940652 | 79940578 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79940758 | 79940833 | 79940758 | ID=MS.gene61405.t1.exon15;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79940758 | 79940833 | 79940758 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79940941 | 79941040 | 79940941 | ID=MS.gene61405.t1.exon16;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79940941 | 79941040 | 79940941 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79941692 | 79941761 | 79941692 | ID=MS.gene61405.t1.exon17;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79941692 | 79941761 | 79941692 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79945578 | 79945651 | 79945578 | ID=MS.gene61405.t1.exon18;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79945578 | 79945651 | 79945578 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79946949 | 79947055 | 79946949 | ID=MS.gene61405.t1.exon19;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79946949 | 79947055 | 79946949 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79948070 | 79948324 | 79948070 | ID=MS.gene61405.t1.exon20;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79948070 | 79948324 | 79948070 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| chr6.3 | exon | 79952551 | 79952825 | 79952551 | ID=MS.gene61405.t1.exon21;Parent=MS.gene61405.t1 |
| chr6.3 | CDS | 79952551 | 79952825 | 79952551 | ID=cds.MS.gene61405.t1;Parent=MS.gene61405.t1 |
| Gene Sequence |
| Protein sequence |
