AlfalfaGEDB | MS.gene61406

M. sativa cultivar XinJiangDaYe / MS.gene61406

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61406.t1	RHN52888.1	89.2	361	39	0	1	361	1	361	3.50E-185	657.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61406.t1	Q8VWJ2	56.0	75	32	1	140	214	158	231	9.8e-19	95.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61406.t1	A0A072UCB0	89.2	361	39	0	1	361	53	413	2.5e-185	657.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene61406.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61406.t1	MTR_6g086555	89.197	361	39	0	1	361	53	413	0.0	662
MS.gene61406.t1	MTR_1g078260	46.970	396	174	9	1	361	90	484	8.62e-101	306
MS.gene61406.t1	MTR_7g080020	43.089	123	68	2	103	225	443	563	4.16e-24	104
MS.gene61406.t1	MTR_7g080020	40.741	81	46	2	155	235	281	359	1.68e-13	72.4
MS.gene61406.t1	MTR_5g042920	50.000	98	40	2	140	237	306	394	1.40e-23	101
MS.gene61406.t1	MTR_5g042920	39.450	109	55	5	126	230	119	220	1.35e-13	72.0
MS.gene61406.t1	MTR_7g080000	46.226	106	55	2	109	214	388	491	2.08e-23	102
MS.gene61406.t1	MTR_7g080000	40.964	83	47	2	153	235	233	313	2.26e-13	71.6
MS.gene61406.t1	MTR_7g100510	34.868	152	94	3	80	231	291	437	4.57e-23	100
MS.gene61406.t1	MTR_7g100510	46.667	75	38	2	155	229	190	262	7.16e-14	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61406.t1	AT5G41570	53.425	73	33	1	139	211	83	154	1.10e-22	94.0
MS.gene61406.t1	AT1G13960	54.667	75	33	1	140	214	395	468	1.66e-22	99.0
MS.gene61406.t1	AT1G13960	46.575	73	36	3	148	219	222	292	3.60e-13	70.9
MS.gene61406.t1	AT4G18170	56.000	75	32	1	140	214	158	231	1.84e-22	96.7
MS.gene61406.t1	AT1G29860	56.757	74	31	1	141	214	123	195	1.92e-22	95.9
MS.gene61406.t1	AT1G13960	54.667	75	33	1	140	214	242	315	2.59e-22	97.1
MS.gene61406.t1	AT1G13960	46.575	73	36	3	148	219	69	139	1.23e-12	68.6
MS.gene61406.t1	AT2G03340	54.667	75	33	1	140	214	401	474	3.49e-22	98.2
MS.gene61406.t1	AT2G03340	47.761	67	32	3	149	214	244	308	1.39e-12	69.3
MS.gene61406.t1	AT1G64000	53.521	71	32	1	141	211	101	170	3.54e-22	93.2

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Find 75 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATGAAGTTCTGGTAG+TGG	0.536148	6.3:-79929592	None:intergenic
AACCTGTAATGTGAGAAAAC+AGG	0.528589	6.3:+79929180	MS.gene61406:CDS
AAGATTCATAACTTTCAGAG+CGG	0.728852	6.3:-79929396	None:intergenic
AAGCAACATCATTCCTTCAA+TGG	0.416911	6.3:-79928172	None:intergenic
AAGGAAATGCTAAATACCCT+AGG	0.580382	6.3:+79928480	MS.gene61406:CDS
AAGTGAATGATGGTTATCGT+TGG	0.626452	6.3:+79928432	MS.gene61406:CDS
AATACCATGATGATGCCTTA+TGG	0.355278	6.3:+79929472	MS.gene61406:CDS
AATACTGGGAACAGCTTGAG+AGG	0.558169	6.3:-79929548	None:intergenic
AATGAAGACAAAGTGAATGA+TGG	0.529985	6.3:+79928422	MS.gene61406:CDS
ACAACACTTGATCAAGGACA+TGG	0.685805	6.3:+79927949	MS.gene61406:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTCATAACTTTCAGAG+CGG	-	chr6.3:79929399-79929418	None:intergenic	30.0%
AATGAAGACAAAGTGAATGA+TGG	+	chr6.3:79928422-79928441	MS.gene61406:CDS	30.0%
CTTCTAATTATAAAGAACGG+GGG	-	chr6.3:79928675-79928694	None:intergenic	30.0%
GCTAAACACTGAAATTCTAA+AGG	+	chr6.3:79928014-79928033	MS.gene61406:CDS	30.0%
TAATTGCATTACTTTGCACA+TGG	-	chr6.3:79927993-79928012	None:intergenic	30.0%
TATGAAGGCAAACATAATCA+CGG	+	chr6.3:79929244-79929263	MS.gene61406:CDS	30.0%
TCCTAATTATTATGCAATGC+AGG	+	chr6.3:79928312-79928331	MS.gene61406:intron	30.0%
TCCTGCATTGCATAATAATT+AGG	-	chr6.3:79928316-79928335	None:intergenic	30.0%
TTATTGACCATGTTCAAGAA+AGG	-	chr6.3:79929454-79929473	None:intergenic	30.0%
AACCTGTAATGTGAGAAAAC+AGG	+	chr6.3:79929180-79929199	MS.gene61406:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	79927880	79929717	79927880	ID=MS.gene61406
chr6.3	mRNA	79927880	79929717	79927880	ID=MS.gene61406.t1;Parent=MS.gene61406
chr6.3	exon	79927880	79928235	79927880	ID=MS.gene61406.t1.exon1;Parent=MS.gene61406.t1
chr6.3	CDS	79927880	79928235	79927880	ID=cds.MS.gene61406.t1;Parent=MS.gene61406.t1
chr6.3	exon	79928334	79928501	79928334	ID=MS.gene61406.t1.exon2;Parent=MS.gene61406.t1
chr6.3	CDS	79928334	79928501	79928334	ID=cds.MS.gene61406.t1;Parent=MS.gene61406.t1
chr6.3	exon	79929156	79929717	79929156	ID=MS.gene61406.t1.exon3;Parent=MS.gene61406.t1
chr6.3	CDS	79929156	79929717	79929156	ID=cds.MS.gene61406.t1;Parent=MS.gene61406.t1

Gene Sequence

>MS.gene61406

ATGGCAACGGGAGGAGGTGTAGAACTCCAAGATGAAGTTCAACATCCAATTTCAAATATTTCCTTCCCAACAACACTTGATCAAGGACATGGTGCAGAAAAAGAACAAGTCCATGTGCAAAGTAATGCAATTACGCTAAACACTGAAATTCTAAAGGCTAGGAAAGGAAAGATGCCAATGAATTATCGTGAAGATGCACCTACCCAAGAAGTTGTTGCAGCTGATGAAGCAAAAACGGTATCCTTAGATGAACAACAAGTTACAAATACAACTATTGGTGTTGAAGCAAGTTCCATTGAAGGAATGATGTTGCTTCAACATAATGATACTAGTGCTAGTGGATCTTCTTCACAAAGGTTTTATAATTATTCGATATTGTAAATATATATTTGTTTCAAACAAAAAATGGCTAACTTTTTTTATTTTTTCATTTCCTAATTATTATGCAATGCAGGAAGAGGAAAATTGACTTCTCTGAACACTATAAACTCCCTTGCACCATGATAAATGTTGCGCCAAAAGTAGTGTTCAGAATTGAAATCAATGAAGACAAAGTGAATGATGGTTATCGTTGGCATAAGTATGGACGCAAGGAGATCAAAGGAAATGCTAAATACCCTAGGTAATCATTTACCTTTTTCCCTGGTGTCAATGCAAGTATGTGTATATTTATAAATGTTTTTCTTTTTAATGCATTATTCGCCTTGGTGTATATATGAAAGAGGAATATATGATTCAAGACATCATGGACTAGTACTTAAACTTTTTCTAAAACACCAACAACTACTGACGCCCCCGTTCTTTATAATTAGAAGTTTATAGTTCTCATTGTTTTCATAGCCAAGACAGTGACATAAATTTATATATATTATCATTCCGTTTATTGTCTCAAATGTGACAACTAGAAAAATATTGAACTTCTACTTTTAAGAGCTAACATCAATCATCATTATACTTTGAGATGATTTTAAGGTATTGATCAACAATTGACCCCTGCTAAAAGTGATTTATCGTAAAGATTACATGCAATTTGATATTAAATTTGTGGGGACATACACGTATATATGTCCCTTAATTATCGATTTTTCACCAAAATTTATTATTTAATTATAAGTAGTTTTCACTATACTTTATTTGTGCACACACATGTTTTAGTATATATATAGTTTCTTATCATGATGTAAATATTGTTCATTGGAATTAAGGTATTTGTACCATGTAGCATATACATAAATATGTTTTGAAGCATGATTAATTAATATTGTATGCATTATAGGGGATACTACAGGTGTACAACAAAAACCTGTAATGTGAGAAAACAGGTGGAAAGGGATGCACAAAATCCGAAATATGTAATTGTTTCATATGAAGGCAAACATAATCACGGATTCCCTATCATAACAAAAAAAAATCCAACAAAGTCAAGTACTACACTGACAACAGTAGCACGTAGGAATGCTAGCATTGTATCGCCACCTTTTGCATTGCCTATGACCCAACCTTTCACACCTCCTCACCGCTCTGAAAGTTATGAATCTTATGGTAAGAACTGTACTTGGCCTAATAATAATCCTTTCTTGAACATGGTCAATAATACCATGATGATGCCTTATGGATATATTAATGGACAACATTTTCGAGATTGTTATGCTGCTCCTTCAATTGCTGCCTCTCAAGCTGTTCCCAGTATTGGTGGATTTCAAATATCTCCACCACTACCAGAACTTCATGATTTTCTTCGACTTAATGGGTACAATATTGCTGCTGCTAGAATGTTTCCTTTTGAAGGTGCTGCACCAATTAATCATGAAGCCAACGACAGTCCTAGTAATGAATGA

Protein sequence

>MS.gene61406.t1

MATGGGVELQDEVQHPISNISFPTTLDQGHGAEKEQVHVQSNAITLNTEILKARKGKMPMNYREDAPTQEVVAADEAKTVSLDEQQVTNTTIGVEASSIEGMMLLQHNDTSASGSSSQRKRKIDFSEHYKLPCTMINVAPKVVFRIEINEDKVNDGYRWHKYGRKEIKGNAKYPRGYYRCTTKTCNVRKQVERDAQNPKYVIVSYEGKHNHGFPIITKKNPTKSSTTLTTVARRNASIVSPPFALPMTQPFTPPHRSESYESYGKNCTWPNNNPFLNMVNNTMMMPYGYINGQHFRDCYAAPSIAASQAVPSIGGFQISPPLPELHDFLRLNGYNIAAARMFPFEGAAPINHEANDSPSNE