Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61442.t1 | XP_003597798.2 | 87.9 | 413 | 46 | 3 | 1 | 412 | 1 | 410 | 3.40E-176 | 627.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61442.t1 | Q5KQI4 | 43.4 | 281 | 146 | 6 | 4 | 282 | 6 | 275 | 8.0e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61442.t1 | G7IMD4 | 87.9 | 413 | 46 | 3 | 1 | 412 | 1 | 410 | 2.5e-176 | 627.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene61442.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61442.t1 | MTR_2g102450 | 91.041 | 413 | 33 | 3 | 1 | 412 | 1 | 410 | 0.0 | 716 |
| MS.gene61442.t1 | MTR_2g102450 | 79.177 | 413 | 28 | 5 | 1 | 412 | 1 | 356 | 0.0 | 591 |
| MS.gene61442.t1 | MTR_4g008310 | 78.531 | 177 | 38 | 0 | 55 | 231 | 128 | 304 | 2.58e-86 | 266 |
| MS.gene61442.t1 | MTR_3g101520 | 41.921 | 229 | 127 | 2 | 9 | 237 | 5 | 227 | 3.08e-48 | 164 |
| MS.gene61442.t1 | MTR_3g101520 | 42.358 | 229 | 118 | 4 | 9 | 237 | 5 | 219 | 7.19e-48 | 163 |
| MS.gene61442.t1 | MTR_4g101970 | 32.692 | 260 | 101 | 7 | 184 | 392 | 51 | 287 | 1.23e-20 | 93.2 |
| MS.gene61442.t1 | MTR_1g035460 | 38.384 | 99 | 56 | 3 | 137 | 233 | 192 | 287 | 1.45e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61442.t1 | AT5G58280 | 47.036 | 253 | 102 | 4 | 12 | 237 | 5 | 252 | 1.68e-65 | 211 |
| MS.gene61442.t1 | AT5G58280 | 46.032 | 252 | 107 | 3 | 12 | 237 | 5 | 253 | 8.19e-65 | 210 |
| MS.gene61442.t1 | AT5G58280 | 46.121 | 232 | 109 | 4 | 12 | 240 | 5 | 223 | 4.91e-59 | 194 |
| MS.gene61442.t1 | AT3G19184 | 42.683 | 246 | 127 | 4 | 12 | 255 | 8 | 241 | 2.45e-47 | 163 |
| MS.gene61442.t1 | AT3G19184 | 42.683 | 246 | 127 | 4 | 12 | 255 | 8 | 241 | 3.22e-47 | 163 |
| MS.gene61442.t1 | AT5G42700 | 41.228 | 228 | 117 | 4 | 10 | 234 | 7 | 220 | 6.31e-44 | 153 |
| MS.gene61442.t1 | AT5G42700 | 53.333 | 120 | 55 | 1 | 116 | 234 | 56 | 175 | 1.70e-36 | 132 |
Find 0 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATATAAATTTATTGA+AGG | - | 15226:7904-7923 | MS.gene61442:CDS | 10.0% |
| !! | TAGAACAAATAAATTTATAT+TGG | + | 15226:7869-7888 | MS.gene61442:intergenic | 10.0% |
| !! | TTAAAATCTTCAAATTTAAA+AGG | - | 15226:7469-7488 | MS.gene61442:intron | 10.0% |
| !!! | GATTTTAAAATATTACAAAA+AGG | + | 15226:7457-7476 | MS.gene61442:intergenic | 10.0% |
| !!! | TCAAAATAATTAACTTATTT+TGG | - | 15226:7252-7271 | MS.gene61442:intron | 10.0% |
| !! | AATTTATTGAAGGTTAATTT+AGG | - | 15226:7914-7933 | MS.gene61442:intron | 15.0% |
| !! | AGTAGAAAAATATAAATACT+AGG | - | 15226:6237-6256 | MS.gene61442:intron | 15.0% |
| !! | ATTTATTTGTTCTATAAGAA+AGG | - | 15226:7875-7894 | MS.gene61442:CDS | 15.0% |
| !!! | AAACTTGCAATTTTTTTATT+TGG | - | 15226:5924-5943 | MS.gene61442:intron | 15.0% |
| !! | ATACTAGTCAAAAACTTTAA+GGG | + | 15226:5423-5442 | MS.gene61442:intergenic | 20.0% |
| !! | ATATAAATACTAGGAATATG+TGG | - | 15226:6246-6265 | MS.gene61442:intron | 20.0% |
| !! | ATATTATCTTTATGTTGTCA+GGG | - | 15226:6897-6916 | MS.gene61442:intron | 20.0% |
| !! | ATATTTGAATTCAAGAATCA+AGG | + | 15226:6368-6387 | MS.gene61442:intergenic | 20.0% |
| !! | TATACTAGTCAAAAACTTTA+AGG | + | 15226:5424-5443 | MS.gene61442:intergenic | 20.0% |
| !! | TATATTATCTTTATGTTGTC+AGG | - | 15226:6896-6915 | MS.gene61442:intron | 20.0% |
| !! | TATTTCACTTTATTACAGTT+TGG | - | 15226:6442-6461 | MS.gene61442:intron | 20.0% |
| !! | TTAGATATTCCATTATACAA+AGG | + | 15226:6198-6217 | MS.gene61442:intergenic | 20.0% |
| !! | TTATCATTTGTAAAATGCTT+AGG | - | 15226:5137-5156 | MS.gene61442:CDS | 20.0% |
| !! | TTTGATATATACTACTCAAT+CGG | + | 15226:5391-5410 | MS.gene61442:intergenic | 20.0% |
| !!! | AAATCAAGGTTTTAAAATAG+TGG | - | 15226:5176-5195 | MS.gene61442:CDS | 20.0% |
| !!! | TACTTTTAGGGTTAAAATTA+CGG | - | 15226:7817-7836 | MS.gene61442:intron | 20.0% |
| !!! | TTTAGATTTTTTGATTGCTT+TGG | + | 15226:8313-8332 | MS.gene61442:intergenic | 20.0% |
| ! | AAAAAACTTGACAACTATCA+AGG | - | 15226:5236-5255 | MS.gene61442:CDS | 25.0% |
| ! | AAAGAAAACTAGAATGCAAA+AGG | - | 15226:8356-8375 | MS.gene61442:intron | 25.0% |
| ! | AAATTGAAATGTTAGTGACA+TGG | - | 15226:6571-6590 | MS.gene61442:intron | 25.0% |
| ! | AAGAAGAAACTCAATATCAA+AGG | + | 15226:7419-7438 | MS.gene61442:intergenic | 25.0% |
| ! | AATAATAACTAAAACCAGCT+TGG | - | 15226:7211-7230 | MS.gene61442:intron | 25.0% |
| ! | AATATTCAAGAGTTTCATGT+TGG | - | 15226:5624-5643 | MS.gene61442:intron | 25.0% |
| ! | AATTGTAATAGAATCCAACT+AGG | + | 15226:5684-5703 | MS.gene61442:intergenic | 25.0% |
| ! | ACATTTACACTACTCAATAT+AGG | + | 15226:5596-5615 | MS.gene61442:intergenic | 25.0% |
| ! | ATTGAATCACCTTTGTATAA+TGG | - | 15226:6186-6205 | MS.gene61442:intron | 25.0% |
| ! | ATTTGAAAATATAGGTGTAG+AGG | - | 15226:8236-8255 | MS.gene61442:intron | 25.0% |
| ! | ATTTGCAAACAAAAAACAAG+TGG | + | 15226:8052-8071 | MS.gene61442:intergenic | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | - | 15226:7052-7071 | MS.gene61442:CDS | 25.0% |
| ! | CCAAAATAGTTGTTATAACT+AGG | - | 15226:7758-7777 | MS.gene61442:CDS | 25.0% |
| ! | GAACAAAATATAAGACACTA+AGG | + | 15226:5788-5807 | MS.gene61442:intergenic | 25.0% |
| ! | TAAGATTATCTCAAACAAAG+TGG | + | 15226:5109-5128 | MS.gene61442:intergenic | 25.0% |
| ! | TGAATATCAAAGTTCATTAG+TGG | + | 15226:7369-7388 | MS.gene61442:intergenic | 25.0% |
| ! | TGACCAAATTAATTCTTACA+AGG | - | 15226:7535-7554 | MS.gene61442:intron | 25.0% |
| ! | TTGATATATACTACTCAATC+GGG | + | 15226:5390-5409 | MS.gene61442:intergenic | 25.0% |
| ! | TTTCATGTTGAATGAAATCA+AGG | - | 15226:5162-5181 | MS.gene61442:CDS | 25.0% |
| ! | TTTGCAAACAAAAAACAAGT+GGG | + | 15226:8051-8070 | MS.gene61442:intergenic | 25.0% |
| !! | AAGCCTTGTAAGAATTAATT+TGG | + | 15226:7541-7560 | MS.gene61442:intergenic | 25.0% |
| !! | AATTCTCATACTTTTGTCTT+AGG | + | 15226:6288-6307 | MS.gene61442:intergenic | 25.0% |
| !! | ATATCTAAAGCTAGTATGAA+TGG | - | 15226:6210-6229 | MS.gene61442:intron | 25.0% |
| !! | ATTCTCATACTTTTGTCTTA+GGG | + | 15226:6287-6306 | MS.gene61442:intergenic | 25.0% |
| !! | CCTAGTTATAACAACTATTT+TGG | + | 15226:7761-7780 | MS.gene61442:intergenic | 25.0% |
| !! | GTTAGAGCATTTGAAAATAT+AGG | - | 15226:8228-8247 | MS.gene61442:intron | 25.0% |
| !! | GTTTTGTCAAAAACAAATCA+TGG | + | 15226:7285-7304 | MS.gene61442:intergenic | 25.0% |
| !! | TGATAATAGTTGTGATAATG+AGG | - | 15226:5710-5729 | MS.gene61442:intron | 25.0% |
| !! | TTTTTGACAAAACTAAACTG+TGG | - | 15226:7292-7311 | MS.gene61442:CDS | 25.0% |
| !!! | AACTTTTGGAGTTTACTTTT+AGG | - | 15226:7804-7823 | MS.gene61442:intron | 25.0% |
| !!! | AATTTAAGTTTCTAGTCTTG+AGG | - | 15226:7318-7337 | MS.gene61442:intron | 25.0% |
| !!! | ACAAGATTAGTCATTGATTT+TGG | + | 15226:6025-6044 | MS.gene61442:intergenic | 25.0% |
| !!! | ACCATTTTAGAATTTGAGAA+GGG | + | 15226:7617-7636 | MS.gene61442:intergenic | 25.0% |
| !!! | ACTTTTGGAGTTTACTTTTA+GGG | - | 15226:7805-7824 | MS.gene61442:intron | 25.0% |
| !!! | AGATGATAAGTTTGTTTTAG+AGG | - | 15226:6959-6978 | MS.gene61442:intron | 25.0% |
| !!! | TACCATTTTAGAATTTGAGA+AGG | + | 15226:7618-7637 | MS.gene61442:intergenic | 25.0% |
| !!! | TGGTAATAGATTTGATAATG+AGG | - | 15226:5644-5663 | MS.gene61442:intron | 25.0% |
| !!! | TTTGTTTTAGAGGATGAAAA+AGG | - | 15226:6969-6988 | MS.gene61442:intron | 25.0% |
| !!! | TTTTGCATTCTAGTTTTCTT+TGG | + | 15226:8357-8376 | MS.gene61442:intergenic | 25.0% |
| AAAAAAAAACCACACAACAC+TGG | + | 15226:6330-6349 | MS.gene61441:intergenic | 30.0% | |
| AAAAGAAGAAATCGATGCTT+TGG | - | 15226:8263-8282 | MS.gene61442:intron | 30.0% | |
| AAAATTCAAGATTTCCGTGT+TGG | - | 15226:5456-5475 | MS.gene61442:CDS | 30.0% | |
| AAATGTTAGTGACATGGTTA+TGG | - | 15226:6577-6596 | MS.gene61442:intron | 30.0% | |
| AAGAATCAAGGAATTCTCAA+AGG | + | 15226:6356-6375 | MS.gene61442:intergenic | 30.0% | |
| AATGTTAGTGACATGGTTAT+GGG | - | 15226:6578-6597 | MS.gene61442:intron | 30.0% | |
| ACAAACTTATCATCTGTCTT+TGG | + | 15226:6954-6973 | MS.gene61442:intergenic | 30.0% | |
| ACATAAAAAACTTGATGCTG+TGG | - | 15226:5570-5589 | MS.gene61442:intron | 30.0% | |
| ACATTGAAGAATGAACAACA+AGG | + | 15226:6824-6843 | MS.gene61442:intergenic | 30.0% | |
| ACTTCCATATGAATTCTGTT+AGG | + | 15226:8168-8187 | MS.gene61442:intergenic | 30.0% | |
| AGAAACATCAAAAACCTAGA+TGG | - | 15226:5328-5347 | MS.gene61442:CDS | 30.0% | |
| AGAATCAAGGAATTCTCAAA+GGG | + | 15226:6355-6374 | MS.gene61442:intergenic | 30.0% | |
| ATCAATGACTAATCTTGTTC+TGG | - | 15226:6027-6046 | MS.gene61442:intron | 30.0% | |
| ATGATAGTTTGAACTTTGCA+AGG | + | 15226:6119-6138 | MS.gene61442:intergenic | 30.0% | |
| CAACTCTCTTATAACTTCAA+AGG | - | 15226:7150-7169 | MS.gene61442:CDS | 30.0% | |
| CTAAATCCTTGAGAACAAAA+GGG | + | 15226:5843-5862 | MS.gene61442:intergenic | 30.0% | |
| GACATATCACTAGTAAATGT+GGG | + | 15226:7739-7758 | MS.gene61442:intergenic | 30.0% | |
| GATTTAACAGTTTCAGACTT+TGG | + | 15226:8405-8424 | MS.gene61442:intergenic | 30.0% | |
| TAAATCCTTGAGAACAAAAG+GGG | + | 15226:5842-5861 | MS.gene61442:intergenic | 30.0% | |
| TGAGTTTCTTCTTAAGTTCA+AGG | - | 15226:7426-7445 | MS.gene61442:intron | 30.0% | |
| TTAAATCAGAGGAAACTTCT+AGG | - | 15226:8418-8437 | MS.gene61442:intron | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | - | 15226:7059-7078 | MS.gene61442:CDS | 30.0% | |
| TTTACCATAGATTTCTTTGC+TGG | + | 15226:5907-5926 | MS.gene61442:intergenic | 30.0% | |
| TTTACCTTGCCCATAAAAAT+GGG | - | 15226:7009-7028 | MS.gene61442:intron | 30.0% | |
| TTTCTGCAAAACTATCATGT+TGG | + | 15226:6404-6423 | MS.gene61442:intergenic | 30.0% | |
| ! | AAAGTATGAGAATTTAGCTC+TGG | - | 15226:6294-6313 | MS.gene61442:intron | 30.0% |
| ! | ACAACCACGATTTAAAACTA+TGG | + | 15226:5488-5507 | MS.gene61442:intergenic | 30.0% |
| ! | ACCCTTCTCAAATTCTAAAA+TGG | - | 15226:7613-7632 | MS.gene61442:intron | 30.0% |
| ! | ATCTAAAACTGTGAAACCAA+AGG | - | 15226:8326-8345 | MS.gene61442:intron | 30.0% |
| ! | CCTCTCTTTCTAAAAAACTT+TGG | + | 15226:8750-8769 | MS.gene61442:intergenic | 30.0% |
| ! | GGTAGTTTGCATAAATCTAT+AGG | + | 15226:5742-5761 | MS.gene61442:intergenic | 30.0% |
| ! | TGATGCAGTAGTTTTTGAAT+TGG | - | 15226:7082-7101 | MS.gene61442:CDS | 30.0% |
| ! | TGCAATTTCTGTCAATGTTT+TGG | + | 15226:5881-5900 | MS.gene61442:intergenic | 30.0% |
| ! | TGTATCTGAGAAGATTCTTT+TGG | - | 15226:8584-8603 | MS.gene61442:intron | 30.0% |
| ! | TGTTTATATTTGAGACCCAA+TGG | - | 15226:7975-7994 | MS.gene61442:intron | 30.0% |
| ! | TTTTCCAATGTGCTAACTTT+TGG | - | 15226:7790-7809 | MS.gene61442:intron | 30.0% |
| !! | AACAAAAGCATTTATATGCC+AGG | - | 15226:8119-8138 | MS.gene61442:intron | 30.0% |
| !! | AGCATTGACTTGATAAATGA+TGG | + | 15226:6724-6743 | MS.gene61442:intergenic | 30.0% |
| !! | CTCATGTTTATAGCTGTTTT+TGG | - | 15226:6749-6768 | MS.gene61442:CDS | 30.0% |
| !! | CTTTGAAGTTATAAGAGAGT+TGG | + | 15226:7152-7171 | MS.gene61442:intergenic | 30.0% |
| !! | TAGATTTGATAATGAGGTTG+CGG | - | 15226:5650-5669 | MS.gene61442:intron | 30.0% |
| !!! | CCAAAGTTTTTTAGAAAGAG+AGG | - | 15226:8747-8766 | MS.gene61442:CDS | 30.0% |
| !!! | TAAGCCATAGTTTTAAATCG+TGG | - | 15226:5481-5500 | MS.gene61442:CDS | 30.0% |
| !!! | TGTTTATAGCTGTTTTTGGT+TGG | - | 15226:6753-6772 | MS.gene61442:CDS | 30.0% |
| AACAAGAAAAGGAAGGCAAA+AGG | - | 15226:8558-8577 | MS.gene61442:intron | 35.0% | |
| AACAGCTATAAACATGAGAC+CGG | + | 15226:6747-6766 | MS.gene61442:intergenic | 35.0% | |
| AACTATGGCTTAAACCAACA+CGG | + | 15226:5473-5492 | MS.gene61442:intergenic | 35.0% | |
| AACTCCAAAAGTTAGCACAT+TGG | + | 15226:7797-7816 | MS.gene61442:intergenic | 35.0% | |
| AAGTCCAGCAAAGAAATCTA+TGG | - | 15226:5900-5919 | MS.gene61442:intron | 35.0% | |
| ACCTGCAATAATGTATTGTC+AGG | + | 15226:8201-8220 | MS.gene61442:intergenic | 35.0% | |
| AGATTTATGCAAACTACCTG+TGG | - | 15226:5744-5763 | MS.gene61442:intron | 35.0% | |
| AGCTAAGTGAAACCAAATGT+TGG | + | 15226:5967-5986 | MS.gene61442:intergenic | 35.0% | |
| ATGTTCCTCACAAAATCTAC+TGG | + | 15226:6928-6947 | MS.gene61442:intergenic | 35.0% | |
| CAAAGTTGCCAAACAAGAAA+AGG | - | 15226:8547-8566 | MS.gene61442:intron | 35.0% | |
| CAACAAGGTTAACAATGTGT+AGG | + | 15226:6809-6828 | MS.gene61442:intergenic | 35.0% | |
| CAACTATGTTGGCAATATCA+AGG | + | 15226:5519-5538 | MS.gene61442:intergenic | 35.0% | |
| CAAGACATAGTTGTCAAATG+TGG | + | 15226:5301-5320 | MS.gene61442:intergenic | 35.0% | |
| CAAGTTAGTACCATTACAAG+TGG | + | 15226:7673-7692 | MS.gene61442:intergenic | 35.0% | |
| CATTTATCAAGTCAATGCTC+CGG | - | 15226:6725-6744 | MS.gene61442:CDS | 35.0% | |
| CATTTGACAACTATGTCTTG+CGG | - | 15226:5301-5320 | MS.gene61442:CDS | 35.0% | |
| CCTAAATCCTTGAGAACAAA+AGG | + | 15226:5844-5863 | MS.gene61442:intergenic | 35.0% | |
| CTCTGTAAAGAACCAACATT+TGG | - | 15226:5952-5971 | MS.gene61442:intron | 35.0% | |
| CTTGGTGAAAATGTTGTTGA+TGG | - | 15226:7229-7248 | MS.gene61442:intron | 35.0% | |
| GGAAGAGGAATACTTTCAAA+TGG | - | 15226:7339-7358 | MS.gene61442:intron | 35.0% | |
| GGACATATCACTAGTAAATG+TGG | + | 15226:7740-7759 | MS.gene61442:intergenic | 35.0% | |
| GGCACTAACTACTTAGAATT+TGG | + | 15226:7848-7867 | MS.gene61442:intergenic | 35.0% | |
| GTCTATCACGATAGATTGAT+CGG | + | 15226:7189-7208 | MS.gene61442:intergenic | 35.0% | |
| GTGTCCTAACAGAATTCATA+TGG | - | 15226:8161-8180 | MS.gene61442:intron | 35.0% | |
| GTTTACCTTGCCCATAAAAA+TGG | - | 15226:7008-7027 | MS.gene61442:intron | 35.0% | |
| TAAGAGAGTTGGATGAGAAT+CGG | + | 15226:7141-7160 | MS.gene61442:intergenic | 35.0% | |
| TACCAGTAACAAGTATGAAG+CGG | - | 15226:5035-5054 | MS.gene61442:CDS | 35.0% | |
| TAGAATCCAACTAGGAATTG+TGG | + | 15226:5676-5695 | MS.gene61442:intergenic | 35.0% | |
| TCAACATCAACATCCTCAAT+AGG | + | 15226:8657-8676 | MS.gene61442:intergenic | 35.0% | |
| TCAAGAAAGAAAACGTGCTT+GGG | - | 15226:6657-6676 | MS.gene61442:intron | 35.0% | |
| TCCTGACAATACATTATTGC+AGG | - | 15226:8197-8216 | MS.gene61442:intron | 35.0% | |
| TCGAAGACTGCAAATTGATT+TGG | + | 15226:6699-6718 | MS.gene61442:intergenic | 35.0% | |
| TCTATCACGATAGATTGATC+GGG | + | 15226:7188-7207 | MS.gene61442:intergenic | 35.0% | |
| TGTTCCTCACAAAATCTACT+GGG | + | 15226:6927-6946 | MS.gene61442:intergenic | 35.0% | |
| ! | AATATCCCCTTTTGTTCTCA+AGG | - | 15226:5834-5853 | MS.gene61442:intron | 35.0% |
| ! | ATAACCCGCAACAACATTTT+AGG | + | 15226:5359-5378 | MS.gene61442:intergenic | 35.0% |
| ! | CCTTTTGTTCTCAAGGATTT+AGG | - | 15226:5841-5860 | MS.gene61442:intron | 35.0% |
| ! | GGTTGATGTAGATTCAATTG+CGG | + | 15226:5280-5299 | MS.gene61442:intergenic | 35.0% |
| ! | GTCTGAAACTGTTAAATCAG+AGG | - | 15226:8407-8426 | MS.gene61442:intron | 35.0% |
| ! | TTCATACTTGTTACTGGTAG+TGG | + | 15226:5034-5053 | MS.gene61442:intergenic | 35.0% |
| ! | TTTGCCTTCCTTTTCTTGTT+TGG | + | 15226:8558-8577 | MS.gene61442:intergenic | 35.0% |
| !! | AAAAGCATTTATATGCCAGG+TGG | - | 15226:8122-8141 | MS.gene61442:intron | 35.0% |
| !! | ACCACTAAGCCCATTTTTAT+GGG | + | 15226:7021-7040 | MS.gene61442:intergenic | 35.0% |
| !!! | AATTTAGCTCTGGATTTTGC+AGG | - | 15226:6304-6323 | MS.gene61442:intron | 35.0% |
| !!! | TATAGCTGTTTTTGGTTGGT+AGG | - | 15226:6757-6776 | MS.gene61442:CDS | 35.0% |
| !!! | TCTCATGTGCTAGTTTTTGT+GGG | - | 15226:7581-7600 | MS.gene61442:intron | 35.0% |
| AAAAGCAGCACATACTCCAT+TGG | + | 15226:7994-8013 | MS.gene61442:intergenic | 40.0% | |
| AAACAAAAAACAAGTGGGCC+TGG | + | 15226:8046-8065 | MS.gene61442:intergenic | 40.0% | |
| AAACTAGCACATGAGACAAG+AGG | + | 15226:7577-7596 | MS.gene61442:intergenic | 40.0% | |
| AAAGCAGCACATACTCCATT+GGG | + | 15226:7993-8012 | MS.gene61442:intergenic | 40.0% | |
| ACGATTCTGCACAGAGAAAT+AGG | + | 15226:5993-6012 | MS.gene61442:intergenic | 40.0% | |
| AGAAGAAATCGATGCTTTGG+TGG | - | 15226:8266-8285 | MS.gene61442:intron | 40.0% | |
| ATACGAAGGAACTGTGTTTC+TGG | + | 15226:6074-6093 | MS.gene61442:intergenic | 40.0% | |
| ATATCATCATTCGTTCCACC+TGG | + | 15226:8140-8159 | MS.gene61442:intergenic | 40.0% | |
| CATCAAAAACCTAGATGGTG+TGG | - | 15226:5333-5352 | MS.gene61442:CDS | 40.0% | |
| CGATTCTGCACAGAGAAATA+GGG | + | 15226:5992-6011 | MS.gene61442:intergenic | 40.0% | |
| CTCAAGAAAGAAAACGTGCT+TGG | - | 15226:6656-6675 | MS.gene61442:intron | 40.0% | |
| GAAGAAGGAAGAACCTATTG+AGG | - | 15226:8641-8660 | MS.gene61442:intron | 40.0% | |
| GACTTGAGGAAAACAAGAAG+AGG | - | 15226:5070-5089 | MS.gene61442:CDS | 40.0% | |
| GGAAAACAAGAAGAGGTTTG+AGG | - | 15226:5077-5096 | MS.gene61442:CDS | 40.0% | |
| GGTTGAAGCAGCAAGATTTA+AGG | - | 15226:7103-7122 | MS.gene61442:CDS | 40.0% | |
| GTCAAGGTCAAGTTCATCAT+GGG | - | 15226:6498-6517 | MS.gene61442:intron | 40.0% | |
| GTTAGTACCATTACAAGTGG+TGG | + | 15226:7670-7689 | MS.gene61442:intergenic | 40.0% | |
| GTTGCCAAACAAGAAAAGGA+AGG | - | 15226:8551-8570 | MS.gene61442:intron | 40.0% | |
| TACTGCAATTGAGCCAAAAG+AGG | - | 15226:8488-8507 | MS.gene61442:intron | 40.0% | |
| TCAAGGTCAAGTTCATCATG+GGG | - | 15226:6499-6518 | MS.gene61442:intron | 40.0% | |
| TGTCTTGTCTTGAGTGTGAA+AGG | - | 15226:7711-7730 | MS.gene61442:CDS | 40.0% | |
| TGTGGCCTAAAATGTTGTTG+CGG | - | 15226:5351-5370 | MS.gene61442:CDS | 40.0% | |
| ! | CAACAACATTTTCACCAAGC+TGG | + | 15226:7228-7247 | MS.gene61442:intergenic | 40.0% |
| ! | CATAAAAATGGGCTTAGTGG+TGG | - | 15226:7020-7039 | MS.gene61442:CDS | 40.0% |
| ! | GAAGACTGACTTAGAGAAGA+AGG | - | 15226:8626-8645 | MS.gene61442:intron | 40.0% |
| ! | GCTACTTTGATTTCATCCAG+TGG | + | 15226:6631-6650 | MS.gene61442:intergenic | 40.0% |
| ! | TCTTCCCAGTAGATTTTGTG+AGG | - | 15226:6920-6939 | MS.gene61442:intron | 40.0% |
| !! | AGTTTCTAGTCTTGAGGAAG+AGG | - | 15226:7324-7343 | MS.gene61442:intron | 40.0% |
| !! | CACCACTAAGCCCATTTTTA+TGG | + | 15226:7022-7041 | MS.gene61442:intergenic | 40.0% |
| !! | CTAATCTTGTTCTGGAACCT+AGG | - | 15226:6035-6054 | MS.gene61442:intron | 40.0% |
| !! | GCAATGTTCTCTAAAACTGC+AGG | - | 15226:8020-8039 | MS.gene61442:intron | 40.0% |
| !! | TAAGCCCATTTTTATGGGCA+AGG | + | 15226:7016-7035 | MS.gene61442:intergenic | 40.0% |
| !!! | GTCTCATGTGCTAGTTTTTG+TGG | - | 15226:7580-7599 | MS.gene61442:intron | 40.0% |
| !!! | GTTTTCTTTGGAGCTTCCTT+TGG | + | 15226:8345-8364 | MS.gene61442:intergenic | 40.0% |
| AACCTGCTGCAGAAAAACCT+CGG | - | 15226:8712-8731 | MS.gene61442:CDS | 45.0% | |
| AAGAAAACGTGCTTGGGATG+CGG | - | 15226:6663-6682 | MS.gene61442:intron | 45.0% | |
| AGACACTAAGGCTATGCTAG+TGG | + | 15226:5776-5795 | MS.gene61442:intergenic | 45.0% | |
| AGCACATGAGACAAGAGGTA+AGG | + | 15226:7572-7591 | MS.gene61442:intergenic | 45.0% | |
| AGTTCCTTCGTATGCTGAAG+AGG | - | 15226:6081-6100 | MS.gene61442:intron | 45.0% | |
| ATCGATGCTTTGGTGGAAGA+AGG | - | 15226:8273-8292 | MS.gene61442:intron | 45.0% | |
| CACACTCAAGACAAGACATC+TGG | + | 15226:7709-7728 | MS.gene61442:intergenic | 45.0% | |
| CTTACCTCTTCAGCATACGA+AGG | + | 15226:6088-6107 | MS.gene61442:intergenic | 45.0% | |
| GCCAACATAGTTGTCAACTG+TGG | - | 15226:5526-5545 | MS.gene61442:CDS | 45.0% | |
| GCCACAGTTGACAACTATGT+TGG | + | 15226:5530-5549 | MS.gene61442:intergenic | 45.0% | |
| GGCTAGAGAACAAAGACTTG+AGG | - | 15226:5056-5075 | MS.gene61442:CDS | 45.0% | |
| GGTCAAGGTCAAGTTCATCA+TGG | - | 15226:6497-6516 | MS.gene61442:intron | 45.0% | |
| GGTCATGTCTCTAACTGATG+TGG | + | 15226:7520-7539 | MS.gene61442:intergenic | 45.0% | |
| GTGGCCTAAAATGTTGTTGC+GGG | - | 15226:5352-5371 | MS.gene61442:CDS | 45.0% | |
| TAAGGCTATGCTAGTGGCAA+GGG | + | 15226:5770-5789 | MS.gene61442:intergenic | 45.0% | |
| TCGTATGCTGAAGAGGTAAG+CGG | - | 15226:6088-6107 | MS.gene61442:intron | 45.0% | |
| ! | ACAAGACATCTGGAGCATGA+AGG | + | 15226:7699-7718 | MS.gene61442:intergenic | 45.0% |
| ! | AGCCGCTTCATACTTGTTAC+TGG | + | 15226:5040-5059 | MS.gene61442:intergenic | 45.0% |
| ! | CATTTTAGGCCACACCATCT+AGG | + | 15226:5345-5364 | MS.gene61442:intergenic | 45.0% |
| ! | GCCCATAAAAATGGGCTTAG+TGG | - | 15226:7017-7036 | MS.gene61442:CDS | 45.0% |
| ! | TCAGACTTTGGCTCAAGTGT+AGG | + | 15226:8393-8412 | MS.gene61442:intergenic | 45.0% |
| !! | TTTGGAGCTCGAATTTTCCG+AGG | + | 15226:8732-8751 | MS.gene61442:intergenic | 45.0% |
| !!! | GTGCTAGTTTTTGTGGGTTC+AGG | - | 15226:7587-7606 | MS.gene61442:intron | 45.0% |
| CAAGTTCATCATGGGGAAGG+TGG | - | 15226:6506-6525 | MS.gene61442:intron | 50.0% | |
| CCTCGAAACAGTGAAACCAG+AGG | - | 15226:8518-8537 | MS.gene61442:intron | 50.0% | |
| CTAAGGCTATGCTAGTGGCA+AGG | + | 15226:5771-5790 | MS.gene61442:intergenic | 50.0% | |
| GGTCAAGTTCATCATGGGGA+AGG | - | 15226:6503-6522 | MS.gene61442:intron | 50.0% | |
| GTTGTCAACTGTGGCTGTCA+TGG | - | 15226:5535-5554 | MS.gene61442:CDS | 50.0% | |
| TGCTGAGCCACCACTTGTAA+TGG | - | 15226:7660-7679 | MS.gene61442:intron | 50.0% | |
| TGGCTGGAGAGGATTTGCAT+TGG | - | 15226:7040-7059 | MS.gene61442:CDS | 50.0% | |
| TTGCGGCCACAATTCCTAGT+TGG | - | 15226:5667-5686 | MS.gene61442:intron | 50.0% | |
| ! | AAAATGGGCTTAGTGGTGGC+TGG | - | 15226:7024-7043 | MS.gene61442:CDS | 50.0% |
| ! | CCTCTGGTTTCACTGTTTCG+AGG | + | 15226:8521-8540 | MS.gene61442:intergenic | 50.0% |
| ! | TCGAGGTGTGCATCCTCTTT+TGG | + | 15226:8504-8523 | MS.gene61442:intergenic | 50.0% |
| ! | TTCCGAGGTTTTTCTGCAGC+AGG | + | 15226:8717-8736 | MS.gene61442:intergenic | 50.0% |
| ! | TTTTGCAGGCCAGTGTTGTG+TGG | - | 15226:6318-6337 | MS.gene61442:intron | 50.0% |
| !! | GTTCTCTAAAACTGCAGGCC+AGG | - | 15226:8025-8044 | MS.gene61442:intron | 50.0% |
| ACCTCCTCTGCAACTGTGGA+AGG | + | 15226:6474-6493 | MS.gene61442:intergenic | 55.0% | |
| ACCTTCCACAGTTGCAGAGG+AGG | - | 15226:6470-6489 | MS.gene61442:intron | 55.0% | |
| CACAGTTGCAGAGGAGGTCA+AGG | - | 15226:6476-6495 | MS.gene61442:intron | 55.0% | |
| CAGACCTTCCACAGTTGCAG+AGG | - | 15226:6467-6486 | MS.gene61442:intron | 55.0% | |
| CTTGACCTCCTCTGCAACTG+TGG | + | 15226:6478-6497 | MS.gene61442:intergenic | 55.0% | |
| GGCAACTTTGTAGCTGCCTC+TGG | + | 15226:8537-8556 | MS.gene61442:intergenic | 55.0% | |
| TCAGTTACGCATACGCTGCG+AGG | - | 15226:6605-6624 | MS.gene61442:intron | 55.0% | |
| TGCAGAGGAGGTCAAGGTCA+AGG | - | 15226:6482-6501 | MS.gene61442:intron | 55.0% | |
| ATGCTAGTGGCAAGGGCCAC+AGG | + | 15226:5763-5782 | MS.gene61442:intergenic | 60.0% | |
| ACGTGCTTGGGATGCGGCAG+AGG | - | 15226:6669-6688 | MS.gene61442:CDS | 65.0% | |
| GGGCTTAGTGGTGGCTGGAG+AGG | - | 15226:7029-7048 | MS.gene61442:CDS | 65.0% | |
| !! | CTGGCACGAGAAGAGCGCCT+AGG | + | 15226:6055-6074 | MS.gene61442:intergenic | 65.0% |
| CGCATACGCTGCGAGGCCAC+TGG | - | 15226:6612-6631 | MS.gene61442:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15226 | gene | 5015 | 8773 | 5015 | ID=MS.gene61442 |
| 15226 | mRNA | 5015 | 8773 | 5015 | ID=MS.gene61442.t1;Parent=MS.gene61442 |
| 15226 | exon | 8690 | 8773 | 8690 | ID=MS.gene61442.t1.exon1;Parent=MS.gene61442.t1 |
| 15226 | CDS | 8690 | 8773 | 8690 | ID=cds.MS.gene61442.t1;Parent=MS.gene61442.t1 |
| 15226 | exon | 7867 | 7932 | 7867 | ID=MS.gene61442.t1.exon2;Parent=MS.gene61442.t1 |
| 15226 | CDS | 7867 | 7932 | 7867 | ID=cds.MS.gene61442.t1;Parent=MS.gene61442.t1 |
| 15226 | exon | 7686 | 7781 | 7686 | ID=MS.gene61442.t1.exon3;Parent=MS.gene61442.t1 |
| 15226 | CDS | 7686 | 7781 | 7686 | ID=cds.MS.gene61442.t1;Parent=MS.gene61442.t1 |
| 15226 | exon | 7264 | 7328 | 7264 | ID=MS.gene61442.t1.exon4;Parent=MS.gene61442.t1 |
| 15226 | CDS | 7264 | 7328 | 7264 | ID=cds.MS.gene61442.t1;Parent=MS.gene61442.t1 |
| 15226 | exon | 7014 | 7179 | 7014 | ID=MS.gene61442.t1.exon5;Parent=MS.gene61442.t1 |
| 15226 | CDS | 7014 | 7179 | 7014 | ID=cds.MS.gene61442.t1;Parent=MS.gene61442.t1 |
| 15226 | exon | 6664 | 6870 | 6664 | ID=MS.gene61442.t1.exon6;Parent=MS.gene61442.t1 |
| 15226 | CDS | 6664 | 6870 | 6664 | ID=cds.MS.gene61442.t1;Parent=MS.gene61442.t1 |
| 15226 | exon | 5015 | 5569 | 5015 | ID=MS.gene61442.t1.exon7;Parent=MS.gene61442.t1 |
| 15226 | CDS | 5015 | 5569 | 5015 | ID=cds.MS.gene61442.t1;Parent=MS.gene61442.t1 |
| Gene Sequence |
| Protein sequence |
