Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61474.t1 | XP_003609272.1 | 79.6 | 245 | 27 | 2 | 1 | 237 | 1 | 230 | 1.20E-85 | 326.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61474.t1 | Q9LT81 | 42.4 | 139 | 44 | 3 | 31 | 137 | 81 | 215 | 1.5e-23 | 111.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61474.t1 | G7JVB3 | 79.6 | 245 | 27 | 2 | 1 | 237 | 1 | 230 | 8.8e-86 | 326.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene61474.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61474.t1 | MTR_4g113890 | 84.082 | 245 | 16 | 2 | 1 | 237 | 1 | 230 | 1.65e-137 | 385 |
| MS.gene61474.t1 | MTR_4g113940 | 69.784 | 278 | 36 | 3 | 1 | 238 | 1 | 270 | 2.66e-133 | 376 |
| MS.gene61474.t1 | MTR_4g113860 | 44.444 | 315 | 90 | 7 | 1 | 238 | 1 | 307 | 5.51e-81 | 245 |
| MS.gene61474.t1 | MTR_4g113970 | 45.344 | 247 | 54 | 6 | 1 | 167 | 1 | 246 | 1.11e-58 | 186 |
| MS.gene61474.t1 | MTR_3g050390 | 39.113 | 248 | 77 | 8 | 31 | 238 | 15 | 228 | 1.61e-43 | 147 |
| MS.gene61474.t1 | MTR_3g466460 | 62.069 | 87 | 14 | 2 | 169 | 238 | 10 | 94 | 1.80e-24 | 94.7 |
| MS.gene61474.t1 | MTR_8g066730 | 36.364 | 110 | 44 | 1 | 54 | 137 | 91 | 200 | 4.94e-17 | 78.6 |
| MS.gene61474.t1 | MTR_8g066730 | 36.364 | 110 | 44 | 1 | 54 | 137 | 91 | 200 | 6.54e-17 | 79.3 |
| MS.gene61474.t1 | MTR_8g066730 | 35.294 | 119 | 53 | 4 | 142 | 238 | 258 | 374 | 9.02e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61474.t1 | AT3G19360 | 35.017 | 297 | 100 | 7 | 31 | 238 | 81 | 373 | 5.05e-45 | 155 |
| MS.gene61474.t1 | AT3G19360 | 35.017 | 297 | 100 | 7 | 31 | 238 | 81 | 373 | 5.05e-45 | 155 |
| MS.gene61474.t1 | AT2G35430 | 32.821 | 195 | 105 | 8 | 55 | 238 | 71 | 250 | 3.14e-20 | 86.7 |
| MS.gene61474.t1 | AT1G32360 | 33.913 | 115 | 45 | 2 | 54 | 137 | 90 | 204 | 6.19e-15 | 73.6 |
| MS.gene61474.t1 | AT1G32360 | 33.884 | 121 | 56 | 4 | 142 | 238 | 262 | 382 | 3.81e-11 | 62.4 |
Find 62 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTAGCTTCTGCGAATT+TGG | 0.155359 | 8.3:+13438361 | None:intergenic |
| ATGAAGATCCTGCACAATTT+AGG | 0.163729 | 8.3:-13438237 | MS.gene61474:CDS |
| CCAAGTATACGTTTCTTCTT+AGG | 0.214369 | 8.3:+13437209 | None:intergenic |
| TGAAGATCCTGCACAATTTA+GGG | 0.278155 | 8.3:-13438236 | MS.gene61474:CDS |
| AGTCAGATAATTCGTATTTA+CGG | 0.294179 | 8.3:-13437176 | MS.gene61474:CDS |
| TAATTCGTATTTACGGTGAT+TGG | 0.334671 | 8.3:-13437169 | MS.gene61474:CDS |
| GATACAGGATATTGTTCCTT+TGG | 0.336419 | 8.3:-13438175 | MS.gene61474:CDS |
| ATTTGTACTAAGTTCAGATT+TGG | 0.359410 | 8.3:-13438448 | MS.gene61474:CDS |
| CACAATTTAGGGGCACTTAT+CGG | 0.370314 | 8.3:-13438225 | MS.gene61474:CDS |
| AAATCAGAGTTACAAGTTCC+TGG | 0.400098 | 8.3:-13437353 | MS.gene61474:intron |
| AATTGCAGCTTCAGCTTCAA+TGG | 0.400607 | 8.3:+13437301 | None:intergenic |
| GACTTGCAGGGGAGGTGGTA+GGG | 0.419543 | 8.3:+13437258 | None:intergenic |
| TGCAAGTCAACTTGTGGAAA+AGG | 0.437938 | 8.3:-13437243 | MS.gene61474:CDS |
| CCTAAGAAGAAACGTATACT+TGG | 0.441257 | 8.3:-13437209 | MS.gene61474:CDS |
| AGATTTGGTGCTTGTAGAAA+CGG | 0.444340 | 8.3:-13438433 | MS.gene61474:CDS |
| CTGAGGCGGTGACATCTTAG+AGG | 0.449778 | 8.3:+13438600 | None:intergenic |
| TTAGAGGTTGGAATATCATC+TGG | 0.452783 | 8.3:+13438616 | None:intergenic |
| AACTGCAGATTCAGCTTCAA+TGG | 0.461590 | 8.3:+13437325 | None:intergenic |
| CACTTTGCTCATGGTGAAGA+AGG | 0.463092 | 8.3:-13438142 | MS.gene61474:intron |
| TGTCTCAAGTGGAAGGATAC+AGG | 0.464303 | 8.3:-13438190 | MS.gene61474:CDS |
| ACAAATTGCAACTTTGCTCA+TGG | 0.469357 | 8.3:-13438409 | MS.gene61474:CDS |
| CTGATCTGTTTGATTGAGGA+AGG | 0.475163 | 8.3:+13438494 | None:intergenic |
| CTCATGGGGCTGAAGAGATA+AGG | 0.488249 | 8.3:-13438393 | MS.gene61474:CDS |
| TGTGCAAGAAGTATAGCAAT+GGG | 0.488339 | 8.3:-13438297 | MS.gene61474:CDS |
| CAAATTGCAACTTTGCTCAT+GGG | 0.490368 | 8.3:-13438408 | MS.gene61474:CDS |
| TGACTTGCAGGGGAGGTGGT+AGG | 0.490726 | 8.3:+13437257 | None:intergenic |
| GATTGAGGAAGGGTCATCCT+TGG | 0.496966 | 8.3:+13438505 | None:intergenic |
| AGCTTCTGCGAATTTGGAGG+TGG | 0.504943 | 8.3:+13438367 | None:intergenic |
| CACAAGTTGACTTGCAGGGG+AGG | 0.509364 | 8.3:+13437250 | None:intergenic |
| CCAAATTCGCAGAAGCTAGT+TGG | 0.513477 | 8.3:-13438361 | MS.gene61474:CDS |
| ACTAGCTTCTGCGAATTTGG+AGG | 0.524749 | 8.3:+13438364 | None:intergenic |
| GGAAGGGTCATCCTTGGAGG+AGG | 0.531078 | 8.3:+13438511 | None:intergenic |
| GGCGGTGACATCTTAGAGGT+TGG | 0.533133 | 8.3:+13438604 | None:intergenic |
| AATTTACACTTATCTGCATA+GGG | 0.538027 | 8.3:+13438265 | None:intergenic |
| AACAATGACTTCAAAAGAGA+AGG | 0.542813 | 8.3:-13438562 | MS.gene61474:CDS |
| CTCCCCTGCAAGTCAACTTG+TGG | 0.543090 | 8.3:-13437249 | MS.gene61474:CDS |
| AAGTTGACTTGCAGGGGAGG+TGG | 0.548779 | 8.3:+13437253 | None:intergenic |
| AAATTGCAACTTTGCTCATG+GGG | 0.550865 | 8.3:-13438407 | MS.gene61474:CDS |
| AGGAGGGCATATCAATGCAT+TGG | 0.555491 | 8.3:+13438528 | None:intergenic |
| TGAGGAAGGGTCATCCTTGG+AGG | 0.556539 | 8.3:+13438508 | None:intergenic |
| CATTGATATGCCCTCCTCCA+AGG | 0.556864 | 8.3:-13438522 | MS.gene61474:CDS |
| GAATTTACACTTATCTGCAT+AGG | 0.559420 | 8.3:+13438264 | None:intergenic |
| TTTCCACAAGTTGACTTGCA+GGG | 0.560920 | 8.3:+13437246 | None:intergenic |
| TGGTCTGATCTGTTTGATTG+AGG | 0.566957 | 8.3:+13438490 | None:intergenic |
| TAAGTGCCCCTAAATTGTGC+AGG | 0.568865 | 8.3:+13438229 | None:intergenic |
| CTGTGCAAGAAGTATAGCAA+TGG | 0.572239 | 8.3:-13438298 | MS.gene61474:CDS |
| CTAAGAAGAAACGTATACTT+GGG | 0.583825 | 8.3:-13437208 | MS.gene61474:CDS |
| AAGAACTGTCACTTTGCTCA+TGG | 0.585017 | 8.3:-13438151 | MS.gene61474:CDS |
| TTCCACAAGTTGACTTGCAG+GGG | 0.588906 | 8.3:+13437247 | None:intergenic |
| TCAGCTTCAATGGCTCCACC+AGG | 0.589035 | 8.3:+13437335 | None:intergenic |
| AGACTAAGCTGTGTCTCAAG+TGG | 0.589149 | 8.3:-13438201 | MS.gene61474:CDS |
| ATTGTGCAGGATCTTCATGA+AGG | 0.599081 | 8.3:+13438242 | None:intergenic |
| TAAGCTGTGTCTCAAGTGGA+AGG | 0.609632 | 8.3:-13438197 | MS.gene61474:CDS |
| AAAGTGACAGTTCTTTCCAA+AGG | 0.613225 | 8.3:+13438159 | None:intergenic |
| TGATCTGTTTGATTGAGGAA+GGG | 0.618914 | 8.3:+13438495 | None:intergenic |
| GAAGGGTCATCCTTGGAGGA+GGG | 0.622595 | 8.3:+13438512 | None:intergenic |
| AATATCATCTGGAAAAGCCA+TGG | 0.624162 | 8.3:+13438627 | None:intergenic |
| TTCAATGAAGAGAACTGAGG+CGG | 0.637828 | 8.3:+13438586 | None:intergenic |
| GAAGATCCTGCACAATTTAG+GGG | 0.650410 | 8.3:-13438235 | MS.gene61474:CDS |
| CAAGAAGTATAGCAATGGGG+AGG | 0.680526 | 8.3:-13438293 | MS.gene61474:CDS |
| TCAGAGTTACAAGTTCCTGG+TGG | 0.718686 | 8.3:-13437350 | MS.gene61474:intron |
| GTGCAAGAAGTATAGCAATG+GGG | 0.763140 | 8.3:-13438296 | MS.gene61474:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACAATTTTTTTTAAATATA+AGG | + | chr8.3:13438280-13438299 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAATATAAGGTCT+AGG | + | chr8.3:13438274-13438293 | None:intergenic | 15.0% |
| !!! | CAATAACTCATTTTGATTAT+TGG | - | chr8.3:13437666-13437685 | MS.gene61474:intron | 20.0% |
| !!! | TACTATAATTTCTAGTAGTT+TGG | - | chr8.3:13437987-13438006 | MS.gene61474:intron | 20.0% |
| !!! | TTATAACAATTGCAACTTTT+TGG | - | chr8.3:13438361-13438380 | MS.gene61474:CDS | 20.0% |
| ! | AATGGATGATTACTATTGTA+TGG | - | chr8.3:13437918-13437937 | MS.gene61474:intron | 25.0% |
| ! | AATTTACACTTATCTGCATA+GGG | + | chr8.3:13437520-13437539 | None:intergenic | 25.0% |
| ! | AGTAATCATCCATTAGAATA+AGG | + | chr8.3:13437912-13437931 | None:intergenic | 25.0% |
| ! | AGTCAGATAATTCGTATTTA+CGG | - | chr8.3:13438606-13438625 | MS.gene61474:CDS | 25.0% |
| ! | ATTTGTACTAAGTTCAGATT+TGG | - | chr8.3:13437334-13437353 | MS.gene61474:CDS | 25.0% |
| !! | AAATTCCACAGTTTTACATT+TGG | - | chr8.3:13437959-13437978 | MS.gene61474:intron | 25.0% |
| !! | ACTTTAAGAAGAAACAAGTT+TGG | + | chr8.3:13438062-13438081 | None:intergenic | 25.0% |
| !! | TTAAAGTTTCTGCTGATTAT+TGG | - | chr8.3:13438075-13438094 | MS.gene61474:intron | 25.0% |
| !!! | ATTTTTTTAACTTCGTTGCA+CGG | + | chr8.3:13437448-13437467 | None:intergenic | 25.0% |
| !!! | CTCATTTTGATTATTGGTTT+TGG | - | chr8.3:13437672-13437691 | MS.gene61474:intron | 25.0% |
| AACAATGACTTCAAAAGAGA+AGG | - | chr8.3:13437220-13437239 | MS.gene61474:CDS | 30.0% | |
| AAGAGTCAGAACAATATACA+TGG | + | chr8.3:13438390-13438409 | None:intergenic | 30.0% | |
| ATCATCCATTAGAATAAGGA+TGG | + | chr8.3:13437908-13437927 | None:intergenic | 30.0% | |
| CCTCAAAATTATTGATGAGT+CGG | + | chr8.3:13438116-13438135 | None:intergenic | 30.0% | |
| CTAAGAAGAAACGTATACTT+GGG | - | chr8.3:13438574-13438593 | MS.gene61474:CDS | 30.0% | |
| GAATTTACACTTATCTGCAT+AGG | + | chr8.3:13437521-13437540 | None:intergenic | 30.0% | |
| GATGAACATAATACAATAGC+TGG | + | chr8.3:13438035-13438054 | None:intergenic | 30.0% | |
| TAATTCGTATTTACGGTGAT+TGG | - | chr8.3:13438613-13438632 | MS.gene61474:CDS | 30.0% | |
| TCTTACCAAATGTAAAACTG+TGG | + | chr8.3:13437967-13437986 | None:intergenic | 30.0% | |
| TGATTCCATCCTTATTCTAA+TGG | - | chr8.3:13437900-13437919 | MS.gene61474:intron | 30.0% | |
| ! | TTCGTGTTTTGTAGAAAATG+TGG | + | chr8.3:13437315-13437334 | None:intergenic | 30.0% |
| !! | TTTTTCAATGAAGAGAACTG+AGG | + | chr8.3:13437202-13437221 | None:intergenic | 30.0% |
| !!! | AGGGTTTGTTGAATTTTCTA+TGG | + | chr8.3:13438508-13438527 | None:intergenic | 30.0% |
| !!! | TTTGAATGTGTGTCATTTTG+TGG | - | chr8.3:13437820-13437839 | MS.gene61474:intron | 30.0% |
| AAAGTGACAGTTCTTTCCAA+AGG | + | chr8.3:13437626-13437645 | None:intergenic | 35.0% | |
| AAATCAGAGTTACAAGTTCC+TGG | - | chr8.3:13438429-13438448 | MS.gene61474:CDS | 35.0% | |
| AAATTGCAACTTTGCTCATG+GGG | - | chr8.3:13437375-13437394 | MS.gene61474:intron | 35.0% | |
| ACAAATTGCAACTTTGCTCA+TGG | - | chr8.3:13437373-13437392 | MS.gene61474:intron | 35.0% | |
| ATGAAGATCCTGCACAATTT+AGG | - | chr8.3:13437545-13437564 | MS.gene61474:intron | 35.0% | |
| CAAATTGCAACTTTGCTCAT+GGG | - | chr8.3:13437374-13437393 | MS.gene61474:intron | 35.0% | |
| CCAAGTATACGTTTCTTCTT+AGG | + | chr8.3:13438576-13438595 | None:intergenic | 35.0% | |
| CCTAAGAAGAAACGTATACT+TGG | - | chr8.3:13438573-13438592 | MS.gene61474:CDS | 35.0% | |
| GATACAGGATATTGTTCCTT+TGG | - | chr8.3:13437607-13437626 | MS.gene61474:intron | 35.0% | |
| TGAAGATCCTGCACAATTTA+GGG | - | chr8.3:13437546-13437565 | MS.gene61474:intron | 35.0% | |
| TGATCTGTTTGATTGAGGAA+GGG | + | chr8.3:13437290-13437309 | None:intergenic | 35.0% | |
| TGTTCTGACTCTTGAAGTAT+TGG | - | chr8.3:13438397-13438416 | MS.gene61474:CDS | 35.0% | |
| TTAGAGGTTGGAATATCATC+TGG | + | chr8.3:13437169-13437188 | None:intergenic | 35.0% | |
| ! | CCGACTCATCAATAATTTTG+AGG | - | chr8.3:13438113-13438132 | MS.gene61474:intron | 35.0% |
| ! | TGTGCAAGAAGTATAGCAAT+GGG | - | chr8.3:13437485-13437504 | MS.gene61474:intron | 35.0% |
| !! | AGATTTGGTGCTTGTAGAAA+CGG | - | chr8.3:13437349-13437368 | MS.gene61474:CDS | 35.0% |
| !! | TTGACAAAGCAAGTTCTGAA+TGG | - | chr8.3:13437873-13437892 | MS.gene61474:intron | 35.0% |
| AACTGCAGATTCAGCTTCAA+TGG | + | chr8.3:13438460-13438479 | None:intergenic | 40.0% | |
| AATTGCAGCTTCAGCTTCAA+TGG | + | chr8.3:13438484-13438503 | None:intergenic | 40.0% | |
| ATCATACACTCGCACACAAA+TGG | + | chr8.3:13438302-13438321 | None:intergenic | 40.0% | |
| ATTGTGCAGGATCTTCATGA+AGG | + | chr8.3:13437543-13437562 | None:intergenic | 40.0% | |
| CTGATCTGTTTGATTGAGGA+AGG | + | chr8.3:13437291-13437310 | None:intergenic | 40.0% | |
| CTTAATACCGCGGTCAAATA+AGG | - | chr8.3:13438182-13438201 | MS.gene61474:CDS | 40.0% | |
| CTTATTTGACCGCGGTATTA+AGG | + | chr8.3:13438184-13438203 | None:intergenic | 40.0% | |
| GAAGATCCTGCACAATTTAG+GGG | - | chr8.3:13437547-13437566 | MS.gene61474:intron | 40.0% | |
| TGCAAGTCAACTTGTGGAAA+AGG | - | chr8.3:13438539-13438558 | MS.gene61474:CDS | 40.0% | |
| TGGTCTGATCTGTTTGATTG+AGG | + | chr8.3:13437295-13437314 | None:intergenic | 40.0% | |
| TTCAATGAAGAGAACTGAGG+CGG | + | chr8.3:13437199-13437218 | None:intergenic | 40.0% | |
| ! | CTGTGCAAGAAGTATAGCAA+TGG | - | chr8.3:13437484-13437503 | MS.gene61474:intron | 40.0% |
| ! | GCATTAACCTTATTTGACCG+CGG | + | chr8.3:13438192-13438211 | None:intergenic | 40.0% |
| ! | GTGCAAGAAGTATAGCAATG+GGG | - | chr8.3:13437486-13437505 | MS.gene61474:intron | 40.0% |
| !! | AAGAACTGTCACTTTGCTCA+TGG | - | chr8.3:13437631-13437650 | MS.gene61474:intron | 40.0% |
| !! | CACAATTTAGGGGCACTTAT+CGG | - | chr8.3:13437557-13437576 | MS.gene61474:intron | 40.0% |
| !! | TTTCCACAAGTTGACTTGCA+GGG | + | chr8.3:13438539-13438558 | None:intergenic | 40.0% |
| !!! | TTTTCCACAAGTTGACTTGC+AGG | + | chr8.3:13438540-13438559 | None:intergenic | 40.0% |
| ACATTTGTACGTCTCAGCCA+CGG | - | chr8.3:13438241-13438260 | MS.gene61474:CDS | 45.0% | |
| AGACTAAGCTGTGTCTCAAG+TGG | - | chr8.3:13437581-13437600 | MS.gene61474:intron | 45.0% | |
| CACTTTGCTCATGGTGAAGA+AGG | - | chr8.3:13437640-13437659 | MS.gene61474:intron | 45.0% | |
| CCAAATTCGCAGAAGCTAGT+TGG | - | chr8.3:13437421-13437440 | MS.gene61474:intron | 45.0% | |
| TAAGCTGTGTCTCAAGTGGA+AGG | - | chr8.3:13437585-13437604 | MS.gene61474:intron | 45.0% | |
| TAAGTGCCCCTAAATTGTGC+AGG | + | chr8.3:13437556-13437575 | None:intergenic | 45.0% | |
| TCAGAGTTACAAGTTCCTGG+TGG | - | chr8.3:13438432-13438451 | MS.gene61474:CDS | 45.0% | |
| TGTCTCAAGTGGAAGGATAC+AGG | - | chr8.3:13437592-13437611 | MS.gene61474:intron | 45.0% | |
| ! | ACTAGCTTCTGCGAATTTGG+AGG | + | chr8.3:13437421-13437440 | None:intergenic | 45.0% |
| ! | AGGAGGGCATATCAATGCAT+TGG | + | chr8.3:13437257-13437276 | None:intergenic | 45.0% |
| ! | CAAGAAGTATAGCAATGGGG+AGG | - | chr8.3:13437489-13437508 | MS.gene61474:intron | 45.0% |
| ! | CCAACTAGCTTCTGCGAATT+TGG | + | chr8.3:13437424-13437443 | None:intergenic | 45.0% |
| !! | TTCCACAAGTTGACTTGCAG+GGG | + | chr8.3:13438538-13438557 | None:intergenic | 45.0% |
| AGCTTCTGCGAATTTGGAGG+TGG | + | chr8.3:13437418-13437437 | None:intergenic | 50.0% | |
| CATTGATATGCCCTCCTCCA+AGG | - | chr8.3:13437260-13437279 | MS.gene61474:CDS | 50.0% | |
| CGGTATTAAGGATCGTGGCA+TGG | + | chr8.3:13438172-13438191 | None:intergenic | 50.0% | |
| CTCATGGGGCTGAAGAGATA+AGG | - | chr8.3:13437389-13437408 | MS.gene61474:intron | 50.0% | |
| GATTGAGGAAGGGTCATCCT+TGG | + | chr8.3:13437280-13437299 | None:intergenic | 50.0% | |
| TGCCACGATCCTTAATACCG+CGG | - | chr8.3:13438172-13438191 | MS.gene61474:CDS | 50.0% | |
| CTCCCCTGCAAGTCAACTTG+TGG | - | chr8.3:13438533-13438552 | MS.gene61474:CDS | 55.0% | |
| CTGAGGCGGTGACATCTTAG+AGG | + | chr8.3:13437185-13437204 | None:intergenic | 55.0% | |
| GAAGGGTCATCCTTGGAGGA+GGG | + | chr8.3:13437273-13437292 | None:intergenic | 55.0% | |
| GACCGCGGTATTAAGGATCG+TGG | + | chr8.3:13438177-13438196 | None:intergenic | 55.0% | |
| GGCGGTGACATCTTAGAGGT+TGG | + | chr8.3:13437181-13437200 | None:intergenic | 55.0% | |
| TCAGCTTCAATGGCTCCACC+AGG | + | chr8.3:13438450-13438469 | None:intergenic | 55.0% | |
| TGAGGAAGGGTCATCCTTGG+AGG | + | chr8.3:13437277-13437296 | None:intergenic | 55.0% | |
| !! | AAGTTGACTTGCAGGGGAGG+TGG | + | chr8.3:13438532-13438551 | None:intergenic | 55.0% |
| !! | CACAAGTTGACTTGCAGGGG+AGG | + | chr8.3:13438535-13438554 | None:intergenic | 55.0% |
| GACTTGCAGGGGAGGTGGTA+GGG | + | chr8.3:13438527-13438546 | None:intergenic | 60.0% | |
| GGAAGGGTCATCCTTGGAGG+AGG | + | chr8.3:13437274-13437293 | None:intergenic | 60.0% | |
| ! | AAGGTCTAGGACCACGACCG+TGG | + | chr8.3:13438261-13438280 | None:intergenic | 60.0% |
| ! | TGACTTGCAGGGGAGGTGGT+AGG | + | chr8.3:13438528-13438547 | None:intergenic | 60.0% |
| GTACGTCTCAGCCACGGTCG+TGG | - | chr8.3:13438247-13438266 | MS.gene61474:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13437157 | 13438647 | 13437157 | ID=MS.gene61474 |
| chr8.3 | mRNA | 13437157 | 13438647 | 13437157 | ID=MS.gene61474.t1;Parent=MS.gene61474 |
| chr8.3 | exon | 13438143 | 13438647 | 13438143 | ID=MS.gene61474.t1.exon1;Parent=MS.gene61474.t1 |
| chr8.3 | CDS | 13438143 | 13438647 | 13438143 | ID=cds.MS.gene61474.t1;Parent=MS.gene61474.t1 |
| chr8.3 | exon | 13437157 | 13437368 | 13437157 | ID=MS.gene61474.t1.exon2;Parent=MS.gene61474.t1 |
| chr8.3 | CDS | 13437157 | 13437368 | 13437157 | ID=cds.MS.gene61474.t1;Parent=MS.gene61474.t1 |
| Gene Sequence |
| Protein sequence |
