AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61483

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61483.t1 MTR_4g113970 94.737 247 12 1 1 246 1 247 9.91e-178 492
MS.gene61483.t1 MTR_4g113860 62.500 336 87 9 1 326 1 307 6.93e-141 401
MS.gene61483.t1 MTR_4g113940 56.402 328 83 10 1 326 1 270 1.57e-112 327
MS.gene61483.t1 MTR_3g050390 52.297 283 74 7 44 326 7 228 6.99e-89 266
MS.gene61483.t1 MTR_4g113890 47.130 331 68 9 1 325 1 230 1.21e-74 229
MS.gene61483.t1 MTR_8g066730 33.557 298 147 9 71 326 86 374 7.50e-40 144
MS.gene61483.t1 MTR_4g113980 93.902 82 5 0 245 326 9 90 8.65e-36 125
MS.gene61483.t1 MTR_8g066730 35.922 206 91 6 71 244 86 282 1.94e-30 117
MS.gene61483.t1 MTR_3g466460 56.989 93 33 2 240 326 3 94 3.42e-22 90.9
MS.gene61483.t1 MTR_3g028610 42.857 91 47 1 154 244 96 181 7.36e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61483.t1 AT3G19360 45.794 321 132 11 42 326 59 373 5.80e-77 241
MS.gene61483.t1 AT3G19360 45.794 321 132 11 42 326 59 373 5.80e-77 241
MS.gene61483.t1 AT1G32360 31.879 298 161 8 71 326 85 382 7.75e-36 133
MS.gene61483.t1 AT2G35430 30.583 206 105 9 138 326 66 250 6.27e-16 76.6
MS.gene61483.t1 AT2G35430 35.849 106 46 4 77 168 71 168 2.97e-11 63.2

Find 99 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTTCTCCAAAGTCTTT+TGG 0.221074 8.3:-13390943 MS.gene61483:CDS
GCAATAAGCATTGGAAATAT+TGG 0.228785 8.3:-13390961 MS.gene61483:CDS
ATGAGGATCCTGCTAGGTTT+AGG 0.244285 8.3:-13391014 MS.gene61483:CDS
TGGGGATGGTTCTAACAATT+TGG 0.253072 8.3:-13390923 MS.gene61483:CDS
CTAACAATTTGGAAGGCATT+AGG 0.254194 8.3:-13390912 MS.gene61483:CDS
AAGAAGATCAATGGTATTTA+TGG 0.269407 8.3:-13388993 MS.gene61483:CDS
CACTTACTTAGGTTGAAATT+AGG 0.275359 8.3:-13389017 MS.gene61483:CDS
CAAGGCAGCCACCACCAAAT+TGG 0.283685 8.3:-13391131 MS.gene61483:CDS
TGAGGATCCTGCTAGGTTTA+GGG 0.310738 8.3:-13391013 MS.gene61483:CDS
CTAGGTTTAGGGATGATTCT+TGG 0.317545 8.3:-13391002 MS.gene61483:CDS
GCAATACCTGTTGAGGCTTT+TGG 0.323196 8.3:+13389110 None:intergenic
TTCCAATAAGCGCTCCTTGC+TGG 0.328577 8.3:+13390877 None:intergenic
AGCCAGCAAGGAGCGCTTAT+TGG 0.331978 8.3:-13390879 MS.gene61483:CDS
TCAATGGTATTTATGGTGAT+TGG 0.333200 8.3:-13388986 MS.gene61483:CDS
CACTTCAATGATATCGTTGT+TGG 0.339985 8.3:+13391458 None:intergenic
ATACAGGGAGCTGTCCCTTT+GGG 0.341839 8.3:-13390831 MS.gene61483:CDS
ACCTGAACTTAGTGCAGATT+CGG 0.365276 8.3:+13391277 None:intergenic
TCAAAGTGATCGTTATTGAT+TGG 0.371371 8.3:+13391423 None:intergenic
TAACAATTTGGAAGGCATTA+GGG 0.381170 8.3:-13390911 MS.gene61483:CDS
CAAAGTGATCGTTATTGATT+GGG 0.381558 8.3:+13391424 None:intergenic
TAAGGCAGCCACCGCGGAAT+TGG 0.383871 8.3:-13391200 MS.gene61483:CDS
ATGCTGCTTGTTCCTCGGTT+TGG 0.390724 8.3:+13391312 None:intergenic
AACGGTGAGGAATGTCCTTA+TGG 0.402090 8.3:-13391057 MS.gene61483:CDS
AGGTTTGGTACTTGTAGAAA+TGG 0.405516 8.3:-13391258 MS.gene61483:CDS
CCCGAATCTGCACTAAGTTC+AGG 0.412306 8.3:-13391278 MS.gene61483:CDS
ATCTGCACTAAGTTCAGGTT+TGG 0.426557 8.3:-13391273 MS.gene61483:CDS
CCTGAACTTAGTGCAGATTC+GGG 0.429469 8.3:+13391278 None:intergenic
CATACAGGGAGCTGTCCCTT+TGG 0.435906 8.3:-13390832 MS.gene61483:CDS
GATTGATATGCCCTCCTTCA+AGG 0.436742 8.3:-13391350 MS.gene61483:CDS
CTGCTTGTTCCTCGGTTTGG+TGG 0.444819 8.3:+13391315 None:intergenic
GCAGCCACCGCGGAATTGGC+AGG 0.444919 8.3:-13391196 MS.gene61483:CDS
ATAAGAAGAAGCACTTACTT+AGG 0.445087 8.3:-13389028 MS.gene61483:CDS
AAGGCAGCCACCACCAAATT+GGG 0.448398 8.3:-13391130 MS.gene61483:CDS
CTGTGTCAATGGCAGCATAC+AGG 0.450029 8.3:-13390847 MS.gene61483:CDS
GAACCATCCCCAAAAGACTT+TGG 0.450065 8.3:+13390934 None:intergenic
CTTGTTCCTCGGTTTGGTGG+AGG 0.456539 8.3:+13391318 None:intergenic
CACTTTGCTCATGGAGAAGC+AGG 0.457533 8.3:-13390799 MS.gene61483:intron
AGCAATTCTCGCCCTCTTGA+AGG 0.471550 8.3:+13391392 None:intergenic
AATATCGTCTGGAAAATTCA+TGG 0.472650 8.3:+13391518 None:intergenic
CTACAGGTTGGAATATCGTC+TGG 0.476700 8.3:+13391507 None:intergenic
GAAGGTAGTAGTAGAATCAT+TGG 0.481926 8.3:+13389088 None:intergenic
AAAATTGCAACTACGCTCAC+GGG 0.484638 8.3:-13391233 MS.gene61483:CDS
TCGTTATTGATTGGGATTTG+AGG 0.495130 8.3:+13391432 None:intergenic
ACTTCACCAAAAGCCTCAAC+AGG 0.497696 8.3:-13389116 MS.gene61483:CDS
GGAGGCTGAATCATCCTTGA+AGG 0.501461 8.3:+13391336 None:intergenic
GAGACCTGTCACTTTGCTCA+TGG 0.502581 8.3:-13390808 MS.gene61483:CDS
CTCACGGGGCTGATGAGATA+AGG 0.504892 8.3:-13391218 MS.gene61483:CDS
GAAAATTGCAACTACGCTCA+CGG 0.511573 8.3:-13391234 MS.gene61483:CDS
TTGATCCTCGCAACGACGAA+CGG 0.512205 8.3:-13391167 MS.gene61483:CDS
TGATCTTCATCCCAATTTGG+TGG 0.514081 8.3:+13391120 None:intergenic
GAGTTACAAGCTCCTGGTGG+AGG 0.514447 8.3:-13389194 MS.gene61483:CDS
AAGCTACACTTATCACCATA+AGG 0.515098 8.3:+13391042 None:intergenic
CATGAGTAGACTTGCGGTGA+AGG 0.515736 8.3:+13389070 None:intergenic
TTCTCCATGAGCAAAGTGAC+AGG 0.523166 8.3:+13390804 None:intergenic
TTCTTCATGAGGATCCTGCT+AGG 0.523992 8.3:-13391020 MS.gene61483:CDS
ATCATTGGCAATACCTGTTG+AGG 0.530706 8.3:+13389103 None:intergenic
GGAAGACAAAGCTGTGTCAA+TGG 0.532349 8.3:-13390858 MS.gene61483:CDS
GAATCATCCCTAAACCTAGC+AGG 0.537317 8.3:+13391006 None:intergenic
TCTTCATCCCAATTTGGTGG+TGG 0.537541 8.3:+13391123 None:intergenic
GATGGTTCTAACAATTTGGA+AGG 0.539743 8.3:-13390919 MS.gene61483:CDS
GAGTGTTCTGCAATAAGCAT+TGG 0.542316 8.3:-13390970 MS.gene61483:CDS
AAGTGACAGGTCTCCCCAAA+GGG 0.549845 8.3:+13390817 None:intergenic
TGTGTCAATGGCAGCATACA+GGG 0.552109 8.3:-13390846 MS.gene61483:CDS
CTGCGGTGGTGACATCCTAC+AGG 0.555913 8.3:+13391491 None:intergenic
CTTTGTCATGAGTAGACTTG+CGG 0.556104 8.3:+13389064 None:intergenic
AAATCAGAGTTACAAGCTCC+TGG 0.561857 8.3:-13389200 MS.gene61483:intron
AAATTAGGCAAGAAGATCAA+TGG 0.564267 8.3:-13389002 MS.gene61483:CDS
CAACGACGAACGGCTTCAGA+TGG 0.574258 8.3:-13391157 MS.gene61483:CDS
TCAGCTTCAATGCCTCCACC+AGG 0.581762 8.3:+13389182 None:intergenic
GGCTGAATCATCCTTGAAGG+AGG 0.587591 8.3:+13391339 None:intergenic
TCTACTCATGACAAAGGAAG+AGG 0.589668 8.3:-13389057 MS.gene61483:CDS
CTCGCCCTCTTGAAGGAATG+TGG 0.590307 8.3:+13391399 None:intergenic
TTGAGCCACATTCCTTCAAG+AGG 0.596203 8.3:-13391404 MS.gene61483:CDS
TACAGGGAGCTGTCCCTTTG+GGG 0.596640 8.3:-13390830 MS.gene61483:CDS
GGAGGGCATATCAATCCACT+AGG 0.602999 8.3:+13391357 None:intergenic
GGGCTGTGAACAAGCCAGCA+AGG 0.614710 8.3:-13390891 MS.gene61483:CDS
TGAGCCACATTCCTTCAAGA+GGG 0.615845 8.3:-13391403 MS.gene61483:CDS
TAAGTGTAGCTTTCTTCATG+AGG 0.621800 8.3:-13391031 MS.gene61483:CDS
TGAAGCCGTTCGTCGTTGCG+AGG 0.623112 8.3:+13391162 None:intergenic
AAAGTGACAGGTCTCCCCAA+AGG 0.626382 8.3:+13390816 None:intergenic
CGCAAGTCTACTCATGACAA+AGG 0.627482 8.3:-13389063 MS.gene61483:CDS
CAGACGATATTCCAACCTGT+AGG 0.630277 8.3:-13391506 MS.gene61483:CDS
AGCTCCTGCCAATTCCGCGG+TGG 0.631980 8.3:+13391192 None:intergenic
GAGGGCATATCAATCCACTA+GGG 0.647490 8.3:+13391358 None:intergenic
AACGGCTTCAGATGGAGACA+AGG 0.650858 8.3:-13391149 MS.gene61483:CDS
GCTGAATCATCCTTGAAGGA+GGG 0.652254 8.3:+13391340 None:intergenic
ACTAGCTCCTGCCAATTCCG+CGG 0.663260 8.3:+13391189 None:intergenic
AAATTGCAACTACGCTCACG+GGG 0.679174 8.3:-13391232 MS.gene61483:CDS
GGTGGTGACATCCTACAGGT+TGG 0.681473 8.3:+13391495 None:intergenic
ATGAGATAAGGCAGCCACCG+CGG 0.683865 8.3:-13391206 MS.gene61483:CDS
TCAGAGTTACAAGCTCCTGG+TGG 0.696701 8.3:-13389197 MS.gene61483:intron
GGGCATATCAATCCACTAGG+GGG 0.701239 8.3:+13391360 None:intergenic
ACAACGATATCATTGAAGTG+AGG 0.706867 8.3:-13391455 MS.gene61483:CDS
ATTCAGCCTCCACCAAACCG+AGG 0.710090 8.3:-13391324 MS.gene61483:CDS
CAAGAAGTATTACAACGGTG+AGG 0.717786 8.3:-13391070 MS.gene61483:CDS
AGGGCATATCAATCCACTAG+GGG 0.727577 8.3:+13391359 None:intergenic
CTGTGCAAGAAGTATTACAA+CGG 0.729247 8.3:-13391075 MS.gene61483:CDS
TTGGATGAAGCAAACTGCGG+TGG 0.740311 8.3:+13391477 None:intergenic
TTGTTGGATGAAGCAAACTG+CGG 0.811729 8.3:+13391474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTTTTGCATATT+TGG - chr8.3:13391169-13391188 MS.gene61483:CDS 10.0%
!! GTGATTGAATATTTAAATTT+AGG + chr8.3:13390493-13390512 None:intergenic 15.0%
!! AAACATCCATTATAATATGA+AGG + chr8.3:13390515-13390534 None:intergenic 20.0%
!! AAATAAAAATTCCTGACAAT+GGG + chr8.3:13390450-13390469 None:intergenic 20.0%
!! AATGTTTGACTGTAAAATTA+AGG + chr8.3:13391032-13391051 None:intergenic 20.0%
!! ACAATTACAATAGATAAGAA+AGG - chr8.3:13391196-13391215 MS.gene61483:CDS 20.0%
!! CAAAACCATTAATCAAAATA+GGG + chr8.3:13389752-13389771 None:intergenic 20.0%
!! TCAAAACCATTAATCAAAAT+AGG + chr8.3:13389753-13389772 None:intergenic 20.0%
!! TTAATGTGATTAACTAAGAT+AGG + chr8.3:13389991-13390010 None:intergenic 20.0%
!!! AATGATTTCACTTTGTTTAT+AGG - chr8.3:13390017-13390036 MS.gene61483:intron 20.0%
!!! TTATATGTCATGCTAATTTT+TGG - chr8.3:13390643-13390662 MS.gene61483:intron 20.0%
! AAAAATCTGGTATAGAAACA+TGG + chr8.3:13390241-13390260 None:intergenic 25.0%
! AAGAAGATCAATGGTATTTA+TGG - chr8.3:13391497-13391516 MS.gene61483:CDS 25.0%
! AATAAAAATTCCTGACAATG+GGG + chr8.3:13390449-13390468 None:intergenic 25.0%
! ATTAATCAAAATAGGGAGAA+TGG + chr8.3:13389745-13389764 None:intergenic 25.0%
! CAAATAAAAATTCCTGACAA+TGG + chr8.3:13390451-13390470 None:intergenic 25.0%
! CAATCACCTTCATATTATAA+TGG - chr8.3:13390506-13390525 MS.gene61483:intron 25.0%
! TTATAACAATTGAAGCTGTT+TGG - chr8.3:13391222-13391241 MS.gene61483:CDS 25.0%
!!! ATGTTTCTATACCAGATTTT+TGG - chr8.3:13390240-13390259 MS.gene61483:intron 25.0%
!!! ATTCTCCCTATTTTGATTAA+TGG - chr8.3:13389744-13389763 MS.gene61483:intron 25.0%
!!! TTCTTTCAGTTTTGAAGTAA+TGG - chr8.3:13390087-13390106 MS.gene61483:intron 25.0%
AAAGATAAAAGCAGTCACTT+CGG + chr8.3:13390804-13390823 None:intergenic 30.0%
AAATTAGGCAAGAAGATCAA+TGG - chr8.3:13391488-13391507 MS.gene61483:CDS 30.0%
AATATAAAACCTCGCAAATG+AGG + chr8.3:13390993-13391012 None:intergenic 30.0%
ATGATACCAAGTACGAATAT+CGG + chr8.3:13390740-13390759 None:intergenic 30.0%
TCAAAGTGATCGTTATTGAT+TGG + chr8.3:13389070-13389089 None:intergenic 30.0%
TCAATGGTATTTATGGTGAT+TGG - chr8.3:13391504-13391523 MS.gene61483:CDS 30.0%
TCTTAGTGTTGTCAAATTCA+TGG - chr8.3:13390142-13390161 MS.gene61483:intron 30.0%
TGTCAAAAACCTTAATGTCT+TGG - chr8.3:13391090-13391109 MS.gene61483:CDS 30.0%
TGTCCGACTCATAAAAAAAT+TGG - chr8.3:13390958-13390977 MS.gene61483:CDS 30.0%
TGTGATTAACTAAGATAGGA+AGG + chr8.3:13389987-13390006 None:intergenic 30.0%
TGTTGTGTATGATATTTCCA+TGG - chr8.3:13389898-13389917 MS.gene61483:intron 30.0%
TTCTATGATGATTGTGTAGA+AGG - chr8.3:13389817-13389836 MS.gene61483:intron 30.0%
! AGCTTTTGTTGAGTTTACTA+TGG + chr8.3:13391345-13391364 None:intergenic 30.0%
! CAAAGTGATCGTTATTGATT+GGG + chr8.3:13389069-13389088 None:intergenic 30.0%
! TCAAACATTTTTAATGCAGC+TGG - chr8.3:13391043-13391062 MS.gene61483:CDS 30.0%
! TTTTGATCTTCATCCCAATT+TGG + chr8.3:13389376-13389395 None:intergenic 30.0%
!! AATGGATGTTTGCTATTGTA+TGG - chr8.3:13390524-13390543 MS.gene61483:intron 30.0%
!! ATAAGAAGAAGCACTTACTT+AGG - chr8.3:13391462-13391481 MS.gene61483:CDS 30.0%
!! CACTTACTTAGGTTGAAATT+AGG - chr8.3:13391473-13391492 MS.gene61483:CDS 30.0%
!! GCAATAAGCATTGGAAATAT+TGG - chr8.3:13389529-13389548 MS.gene61483:intron 30.0%
!! TAACAATTTGGAAGGCATTA+GGG - chr8.3:13389579-13389598 MS.gene61483:intron 30.0%
!!! CCTCCAATTTTTTTATGAGT+CGG + chr8.3:13390964-13390983 None:intergenic 30.0%
AAGCTACACTTATCACCATA+AGG + chr8.3:13389451-13389470 None:intergenic 35.0%
ACAACGATATCATTGAAGTG+AGG - chr8.3:13389035-13389054 MS.gene61483:CDS 35.0%
AGCTATAACACTGTTGCATA+AGG + chr8.3:13390371-13390390 None:intergenic 35.0%
AGTTTATGTCAAACCAACCA+TGG + chr8.3:13389918-13389937 None:intergenic 35.0%
ATACACAGTGTTGTCAATTG+TGG - chr8.3:13390315-13390334 MS.gene61483:intron 35.0%
ATAGGCAAAGCAGGTTTAAT+GGG - chr8.3:13390035-13390054 MS.gene61483:intron 35.0%
ATCATACACAACAACGAAAG+TGG + chr8.3:13389891-13389910 None:intergenic 35.0%
ATGAGCCAGAACAAAATACA+TGG + chr8.3:13391251-13391270 None:intergenic 35.0%
CACTTCAATGATATCGTTGT+TGG + chr8.3:13389035-13389054 None:intergenic 35.0%
CCGACTCATAAAAAAATTGG+AGG - chr8.3:13390961-13390980 MS.gene61483:CDS 35.0%
GAAGGTAGTAGTAGAATCAT+TGG + chr8.3:13391405-13391424 None:intergenic 35.0%
GAGTCGGACATTAAATTTAC+AGG + chr8.3:13390948-13390967 None:intergenic 35.0%
GTGTATGATATTTCCATGGT+TGG - chr8.3:13389902-13389921 MS.gene61483:intron 35.0%
TAACCTTATCCATGCAACAT+AGG - chr8.3:13390761-13390780 MS.gene61483:intron 35.0%
TAAGTGTAGCTTTCTTCATG+AGG - chr8.3:13389459-13389478 MS.gene61483:intron 35.0%
TATAGGCAAAGCAGGTTTAA+TGG - chr8.3:13390034-13390053 MS.gene61483:intron 35.0%
TTGTATCCGATATTCGTACT+TGG - chr8.3:13390731-13390750 MS.gene61483:intron 35.0%
! AAAAAATGCTGCTTGTTCCT+CGG + chr8.3:13389186-13389205 None:intergenic 35.0%
! ACTTTGTTTATAGGCAAAGC+AGG - chr8.3:13390026-13390045 MS.gene61483:intron 35.0%
! AGGTTTGGTACTTGTAGAAA+TGG - chr8.3:13389232-13389251 MS.gene61483:intron 35.0%
! GGAAAACTTGTTTGTACGAT+CGG - chr8.3:13390108-13390127 MS.gene61483:intron 35.0%
! GGTTTCCATGTATTTTGTTC+TGG - chr8.3:13391243-13391262 MS.gene61483:CDS 35.0%
! TCGTTATTGATTGGGATTTG+AGG + chr8.3:13389061-13389080 None:intergenic 35.0%
! TTATGATAATGCTGCCCTAT+TGG - chr8.3:13390288-13390307 MS.gene61483:intron 35.0%
!! ATTGGTTCTCCAAAGTCTTT+TGG - chr8.3:13389547-13389566 MS.gene61483:intron 35.0%
!! CTAACAATTTGGAAGGCATT+AGG - chr8.3:13389578-13389597 MS.gene61483:intron 35.0%
!! CTGTGCAAGAAGTATTACAA+CGG - chr8.3:13389415-13389434 MS.gene61483:intron 35.0%
!! GATGGTTCTAACAATTTGGA+AGG - chr8.3:13389571-13389590 MS.gene61483:intron 35.0%
!! TGGTTGGTTTGACATAAACT+TGG - chr8.3:13389918-13389937 MS.gene61483:intron 35.0%
!! TTGGTTCTCCAAAGTCTTTT+GGG - chr8.3:13389548-13389567 MS.gene61483:intron 35.0%
AAAATTGCAACTACGCTCAC+GGG - chr8.3:13389257-13389276 MS.gene61483:intron 40.0%
AAACTGTGGCCAAGACATTA+AGG + chr8.3:13391102-13391121 None:intergenic 40.0%
AAATCAGAGTTACAAGCTCC+TGG - chr8.3:13391290-13391309 MS.gene61483:CDS 40.0%
AAGGTATGCGACAAAAACTG+TGG + chr8.3:13391116-13391135 None:intergenic 40.0%
ACACCTATGTTGCATGGATA+AGG + chr8.3:13390767-13390786 None:intergenic 40.0%
ACACTGTGTATACCTCCAAT+AGG + chr8.3:13390306-13390325 None:intergenic 40.0%
ACCAAAAGACGAAACAGGAT+TGG + chr8.3:13390910-13390929 None:intergenic 40.0%
ACCTGAACTTAGTGCAGATT+CGG + chr8.3:13389216-13389235 None:intergenic 40.0%
ATCATTGGCAATACCTGTTG+AGG + chr8.3:13391390-13391409 None:intergenic 40.0%
CACTGTGTATACCTCCAATA+GGG + chr8.3:13390305-13390324 None:intergenic 40.0%
CAGAAACCAAAAGACGAAAC+AGG + chr8.3:13390915-13390934 None:intergenic 40.0%
CTAGGTTTAGGGATGATTCT+TGG - chr8.3:13389488-13389507 MS.gene61483:intron 40.0%
CTTTGTCATGAGTAGACTTG+CGG + chr8.3:13391429-13391448 None:intergenic 40.0%
GAAAATTGCAACTACGCTCA+CGG - chr8.3:13389256-13389275 MS.gene61483:intron 40.0%
GAGTGTTCTGCAATAAGCAT+TGG - chr8.3:13389520-13389539 MS.gene61483:intron 40.0%
GCAGCATTATCATAAGTGGA+AGG + chr8.3:13390283-13390302 None:intergenic 40.0%
GCATTATCATAAGTGGAAGG+TGG + chr8.3:13390280-13390299 None:intergenic 40.0%
GCTGCAATGGCAATTATATC+TGG - chr8.3:13390190-13390209 MS.gene61483:intron 40.0%
TAATTGCCATTGCAGCCTTA+TGG + chr8.3:13390186-13390205 None:intergenic 40.0%
TAGGGCAGCATTATCATAAG+TGG + chr8.3:13390287-13390306 None:intergenic 40.0%
TATGGTGGCTGGAACAAAAT+CGG + chr8.3:13390168-13390187 None:intergenic 40.0%
TCTACTCATGACAAAGGAAG+AGG - chr8.3:13391433-13391452 MS.gene61483:CDS 40.0%
TGATCTTCATCCCAATTTGG+TGG + chr8.3:13389373-13389392 None:intergenic 40.0%
TTACTGACACCTATGTTGCA+TGG + chr8.3:13390773-13390792 None:intergenic 40.0%
TTGTTGGATGAAGCAAACTG+CGG + chr8.3:13389019-13389038 None:intergenic 40.0%
! AAGCAGGTTTAATGGGCATT+TGG - chr8.3:13390042-13390061 MS.gene61483:intron 40.0%
! ATCTGCACTAAGTTCAGGTT+TGG - chr8.3:13389217-13389236 MS.gene61483:intron 40.0%
! ATTTTGTTCCAGCCACCATA+AGG - chr8.3:13390168-13390187 MS.gene61483:intron 40.0%
! TCCAATCCTGTTTCGTCTTT+TGG - chr8.3:13390906-13390925 MS.gene61483:CDS 40.0%
! TGGTTCTCCAAAGTCTTTTG+GGG - chr8.3:13389549-13389568 MS.gene61483:intron 40.0%
!! CAAGAAGTATTACAACGGTG+AGG - chr8.3:13389420-13389439 MS.gene61483:intron 40.0%
!! TGGGGATGGTTCTAACAATT+TGG - chr8.3:13389567-13389586 MS.gene61483:intron 40.0%
!! TGTTCTGGCTCATGAAGTAT+TGG - chr8.3:13391258-13391277 MS.gene61483:CDS 40.0%
!!! CGTCTTTTGGTTTCTGCTAA+TGG - chr8.3:13390919-13390938 MS.gene61483:CDS 40.0%
AAACATGGCATTGCAGCCTA+TGG + chr8.3:13390226-13390245 None:intergenic 45.0%
AAATTGCAACTACGCTCACG+GGG - chr8.3:13389258-13389277 MS.gene61483:intron 45.0%
AACGGTGAGGAATGTCCTTA+TGG - chr8.3:13389433-13389452 MS.gene61483:intron 45.0%
ACAGCAGCTAGCCAAAAATC+TGG + chr8.3:13390254-13390273 None:intergenic 45.0%
ACTTCACCAAAAGCCTCAAC+AGG - chr8.3:13391374-13391393 MS.gene61483:CDS 45.0%
AGGGCATATCAATCCACTAG+GGG + chr8.3:13389134-13389153 None:intergenic 45.0%
AGGTACATTCCTCATTTGCG+AGG - chr8.3:13390981-13391000 MS.gene61483:CDS 45.0%
ATGAGGATCCTGCTAGGTTT+AGG - chr8.3:13389476-13389495 MS.gene61483:intron 45.0%
ATTCCTGACAATGGGGTTGA+TGG + chr8.3:13390442-13390461 None:intergenic 45.0%
CAGACGATATTCCAACCTGT+AGG - chr8.3:13388984-13389003 MS.gene61483:CDS 45.0%
CCTGAACTTAGTGCAGATTC+GGG + chr8.3:13389215-13389234 None:intergenic 45.0%
CGCAAGTCTACTCATGACAA+AGG - chr8.3:13391427-13391446 MS.gene61483:CDS 45.0%
GAACCATCCCCAAAAGACTT+TGG + chr8.3:13389559-13389578 None:intergenic 45.0%
GAATCATCCCTAAACCTAGC+AGG + chr8.3:13389487-13389506 None:intergenic 45.0%
GATTGATATGCCCTCCTTCA+AGG - chr8.3:13389140-13389159 MS.gene61483:CDS 45.0%
GCTGAATCATCCTTGAAGGA+GGG + chr8.3:13389153-13389172 None:intergenic 45.0%
GGAAGACAAAGCTGTGTCAA+TGG - chr8.3:13389632-13389651 MS.gene61483:intron 45.0%
TAAAAGCAGTCACTTCGGTG+TGG + chr8.3:13390799-13390818 None:intergenic 45.0%
TGAGCCACATTCCTTCAAGA+GGG - chr8.3:13389087-13389106 MS.gene61483:CDS 45.0%
TGAGGATCCTGCTAGGTTTA+GGG - chr8.3:13389477-13389496 MS.gene61483:intron 45.0%
TGTGTCAATGGCAGCATACA+GGG - chr8.3:13389644-13389663 MS.gene61483:intron 45.0%
TTCTCCATGAGCAAAGTGAC+AGG + chr8.3:13389689-13389708 None:intergenic 45.0%
TTCTGCGAAGACAAGGCAAA+GGG + chr8.3:13389960-13389979 None:intergenic 45.0%
TTCTTCATGAGGATCCTGCT+AGG - chr8.3:13389470-13389489 MS.gene61483:intron 45.0%
TTGAGCCACATTCCTTCAAG+AGG - chr8.3:13389086-13389105 MS.gene61483:CDS 45.0%
TTTCTGCGAAGACAAGGCAA+AGG + chr8.3:13389961-13389980 None:intergenic 45.0%
! AAAAGCAGTCACTTCGGTGT+GGG + chr8.3:13390798-13390817 None:intergenic 45.0%
! CTACAGGTTGGAATATCGTC+TGG + chr8.3:13388986-13389005 None:intergenic 45.0%
! GAGGGCATATCAATCCACTA+GGG + chr8.3:13389135-13389154 None:intergenic 45.0%
! GCAATACCTGTTGAGGCTTT+TGG + chr8.3:13391383-13391402 None:intergenic 45.0%
! GTTGAGGCTTTTGGTGAAGT+TGG + chr8.3:13391374-13391393 None:intergenic 45.0%
! TCTTCATCCCAATTTGGTGG+TGG + chr8.3:13389370-13389389 None:intergenic 45.0%
! TGATAATGCTGCCCTATTGG+AGG - chr8.3:13390291-13390310 MS.gene61483:intron 45.0%
! TTCCTGACAATGGGGTTGAT+GGG + chr8.3:13390441-13390460 None:intergenic 45.0%
!! ATCTGGCTTGTTTCCACCAT+AGG - chr8.3:13390207-13390226 MS.gene61483:intron 45.0%
!! TCTCCAAAGTCTTTTGGGGA+TGG - chr8.3:13389553-13389572 MS.gene61483:intron 45.0%
!!! AGATTTTATTTTTTAAATAA+AGG + chr8.3:13391135-13391154 None:intergenic 5.0%
AAAGTGACAGGTCTCCCCAA+AGG + chr8.3:13389677-13389696 None:intergenic 50.0%
AACGGCTTCAGATGGAGACA+AGG - chr8.3:13389341-13389360 MS.gene61483:intron 50.0%
AAGGCAAAGGGGCAACAAAC+AGG + chr8.3:13389948-13389967 None:intergenic 50.0%
AAGGCAGCCACCACCAAATT+GGG - chr8.3:13389360-13389379 MS.gene61483:intron 50.0%
AAGTGACAGGTCTCCCCAAA+GGG + chr8.3:13389676-13389695 None:intergenic 50.0%
AGCAATTCTCGCCCTCTTGA+AGG + chr8.3:13389101-13389120 None:intergenic 50.0%
AGGCACTTTCTGCGAAGACA+AGG + chr8.3:13389967-13389986 None:intergenic 50.0%
ATACAGGGAGCTGTCCCTTT+GGG - chr8.3:13389659-13389678 MS.gene61483:intron 50.0%
CAAAGGGGCAACAAACAGGA+GGG + chr8.3:13389944-13389963 None:intergenic 50.0%
CACTTTGCTCATGGAGAAGC+AGG - chr8.3:13389691-13389710 MS.gene61483:intron 50.0%
CATGAGTAGACTTGCGGTGA+AGG + chr8.3:13391423-13391442 None:intergenic 50.0%
CCCGAATCTGCACTAAGTTC+AGG - chr8.3:13389212-13389231 MS.gene61483:intron 50.0%
CTGTGTCAATGGCAGCATAC+AGG - chr8.3:13389643-13389662 MS.gene61483:intron 50.0%
GCTGATAACAATCCCCCTAG+TGG - chr8.3:13389118-13389137 MS.gene61483:CDS 50.0%
GGAGGCTGAATCATCCTTGA+AGG + chr8.3:13389157-13389176 None:intergenic 50.0%
GGCTGAATCATCCTTGAAGG+AGG + chr8.3:13389154-13389173 None:intergenic 50.0%
GGGCATATCAATCCACTAGG+GGG + chr8.3:13389133-13389152 None:intergenic 50.0%
TCAGAGTTACAAGCTCCTGG+TGG - chr8.3:13391293-13391312 MS.gene61483:CDS 50.0%
TCTGCGAAGACAAGGCAAAG+GGG + chr8.3:13389959-13389978 None:intergenic 50.0%
TTCCAATAAGCGCTCCTTGC+TGG + chr8.3:13389616-13389635 None:intergenic 50.0%
TTCCCATCAACCCCATTGTC+AGG - chr8.3:13390436-13390455 MS.gene61483:intron 50.0%
TTGATCCTCGCAACGACGAA+CGG - chr8.3:13389323-13389342 MS.gene61483:intron 50.0%
TTGGATGAAGCAAACTGCGG+TGG + chr8.3:13389016-13389035 None:intergenic 50.0%
! ATGCTGCTTGTTCCTCGGTT+TGG + chr8.3:13389181-13389200 None:intergenic 50.0%
! GGAGGGCATATCAATCCACT+AGG + chr8.3:13389136-13389155 None:intergenic 50.0%
! TTGCCATTGCAGCCTTATGG+TGG + chr8.3:13390183-13390202 None:intergenic 50.0%
!! GAGACCTGTCACTTTGCTCA+TGG - chr8.3:13389682-13389701 MS.gene61483:intron 50.0%
ACTAGCTCCTGCCAATTCCG+CGG + chr8.3:13389304-13389323 None:intergenic 55.0%
ATGAGATAAGGCAGCCACCG+CGG - chr8.3:13389284-13389303 MS.gene61483:intron 55.0%
ATTCAGCCTCCACCAAACCG+AGG - chr8.3:13389166-13389185 MS.gene61483:CDS 55.0%
CAACGACGAACGGCTTCAGA+TGG - chr8.3:13389333-13389352 MS.gene61483:intron 55.0%
CAAGGCAGCCACCACCAAAT+TGG - chr8.3:13389359-13389378 MS.gene61483:intron 55.0%
CAGCCACCATAAGGCTGCAA+TGG - chr8.3:13390177-13390196 MS.gene61483:intron 55.0%
CATACAGGGAGCTGTCCCTT+TGG - chr8.3:13389658-13389677 MS.gene61483:intron 55.0%
CATGGCATTGCAGCCTATGG+TGG + chr8.3:13390223-13390242 None:intergenic 55.0%
CTCACGGGGCTGATGAGATA+AGG - chr8.3:13389272-13389291 MS.gene61483:intron 55.0%
CTCGCCCTCTTGAAGGAATG+TGG + chr8.3:13389094-13389113 None:intergenic 55.0%
GAGTTACAAGCTCCTGGTGG+AGG - chr8.3:13391296-13391315 MS.gene61483:CDS 55.0%
GCAAAGGGGCAACAAACAGG+AGG + chr8.3:13389945-13389964 None:intergenic 55.0%
GGTGGTGACATCCTACAGGT+TGG + chr8.3:13388998-13389017 None:intergenic 55.0%
TACAGGGAGCTGTCCCTTTG+GGG - chr8.3:13389660-13389679 MS.gene61483:intron 55.0%
TCAGCTTCAATGCCTCCACC+AGG + chr8.3:13391311-13391330 None:intergenic 55.0%
! CATTGCAGCCTTATGGTGGC+TGG + chr8.3:13390179-13390198 None:intergenic 55.0%
!! AGCCAGCAAGGAGCGCTTAT+TGG - chr8.3:13389611-13389630 MS.gene61483:intron 55.0%
!! CTGCTTGTTCCTCGGTTTGG+TGG + chr8.3:13389178-13389197 None:intergenic 55.0%
!! CTTGTTCCTCGGTTTGGTGG+AGG + chr8.3:13389175-13389194 None:intergenic 55.0%
CTGCGGTGGTGACATCCTAC+AGG + chr8.3:13389002-13389021 None:intergenic 60.0%
GGGCTGTGAACAAGCCAGCA+AGG - chr8.3:13389599-13389618 MS.gene61483:intron 60.0%
TAAGGCAGCCACCGCGGAAT+TGG - chr8.3:13389290-13389309 MS.gene61483:intron 60.0%
TGAAGCCGTTCGTCGTTGCG+AGG + chr8.3:13389331-13389350 None:intergenic 60.0%
AGCTCCTGCCAATTCCGCGG+TGG + chr8.3:13389301-13389320 None:intergenic 65.0%
GCAGCCACCGCGGAATTGGC+AGG - chr8.3:13389294-13389313 MS.gene61483:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 13388974 13391538 13388974 ID=MS.gene61483
chr8.3 mRNA 13388974 13391538 13388974 ID=MS.gene61483.t1;Parent=MS.gene61483
chr8.3 exon 13390800 13391538 13390800 ID=MS.gene61483.t1.exon1;Parent=MS.gene61483.t1
chr8.3 CDS 13390800 13391538 13390800 ID=cds.MS.gene61483.t1;Parent=MS.gene61483.t1
chr8.3 exon 13388974 13389215 13388974 ID=MS.gene61483.t1.exon2;Parent=MS.gene61483.t1
chr8.3 CDS 13388974 13389215 13388974 ID=cds.MS.gene61483.t1;Parent=MS.gene61483.t1
Gene Sequence

>MS.gene61483

ATGAATTTTCCAGACGATATTCCAACCTGTAGGATGTCACCACCGCAGTTTGCTTCATCCAACAACGATATCATTGAAGTGAGGCCTCAAATCCCAATCAATAACGATCACTTTGAGCCACATTCCTTCAAGAGGGCGAGAATTGCTGATAACAATCCCCCTAGTGGATTGATATGCCCTCCTTCAAGGATGATTCAGCCTCCACCAAACCGAGGAACAAGCAGCATTTTTTTCAAGACCCGAATCTGCACTAAGTTCAGGTTTGGTACTTGTAGAAATGGCGAAAATTGCAACTACGCTCACGGGGCTGATGAGATAAGGCAGCCACCGCGGAATTGGCAGGAGCTAGTTGATCCTCGCAACGACGAACGGCTTCAGATGGAGACAAGGCAGCCACCACCAAATTGGGATGAAGATCAAAAAATCATTCACAAGATGAAGCTGTGCAAGAAGTATTACAACGGTGAGGAATGTCCTTATGGTGATAAGTGTAGCTTTCTTCATGAGGATCCTGCTAGGTTTAGGGATGATTCTTGGAAAACAAGAGAGTGTTCTGCAATAAGCATTGGAAATATTGGTTCTCCAAAGTCTTTTGGGGATGGTTCTAACAATTTGGAAGGCATTAGGGCTGTGAACAAGCCAGCAAGGAGCGCTTATTGGAAGACAAAGCTGTGTCAATGGCAGCATACAGGGAGCTGTCCCTTTGGGGAGACCTGTCACTTTGCTCATGGAGAAGCAGGTAATGTTAACTCATCTGTTTGTTAATTTCCATTCTCCCTATTTTGATTAATGGTTTTGATTTTAACTTTATCATATAATTCTACTGTTTTGCTTTTTGTGTTGTTCTATGATGATTGTGTAGAAGGTTATCTTCTCTGATATATGATGTACAAATTAATGTGTTTGAATGTGCGCCACTTTCGTTGTTGTGTATGATATTTCCATGGTTGGTTTGACATAAACTTGGCCCTCCTGTTTGTTGCCCCTTTGCCTTGTCTTCGCAGAAAGTGCCTTCCTATCTTAGTTAATCACATTAAATGAAAAATGATTTCACTTTGTTTATAGGCAAAGCAGGTTTAATGGGCATTTGGTATTTTGATCATAATCAAGATATTCTTTCAGTTTTGAAGTAATGGAAAACTTGTTTGTACGATCGGTGATTACTTTATCTTAGTGTTGTCAAATTCATGGCCGATTTTGTTCCAGCCACCATAAGGCTGCAATGGCAATTATATCTGGCTTGTTTCCACCATAGGCTGCAATGCCATGTTTCTATACCAGATTTTTGGCTAGCTGCTGTAAACCACCTTCCACTTATGATAATGCTGCCCTATTGGAGGTATACACAGTGTTGTCAATTGTGGATCACAAAAAATTGTGCTTTGTTCAAATTTCCTTATGCAACAGTGTTATAGCTGCTATTTAACAACACTTGCATAATACTTGAATGAAATTTTGCTTTTTCCCATCAACCCCATTGTCAGGAATTTTTATTTGATAGAGATGACTAGATTTTCCTAAATTTAAATATTCAATCACCTTCATATTATAATGGATGTTTGCTATTGTATGGTGACAAAAAAAAAATATTTTCTTATATTTATTTTCTTATTCAGTTTTGATATGTGATCTAGTGAACGAAGAAAGACGTTTCTTTGTATATTTTATGTTATATGTCATGCTAATTTTTGGTTTCTATTTCTATACAAGCTTGTCATGTTTCTATCTTTCATAAATCTTTGTCATGTTCTATCTTCTTGTATCCGATATTCGTACTTGGTATCATATAACCTTATCCATGCAACATAGGTGTCAGTAATTCCCACACCGAAGTGACTGCTTTTATCTTTCGATCATATCATACGATTGAAATTTGAGTAATTGCTTTTGCTTGCGATTCTGAATAATCAACTATTATCTTATGTTCATCTTTCCAATCCTGTTTCGTCTTTTGGTTTCTGCTAATGGTTGCCTGTAAATTTAATGTCCGACTCATAAAAAAATTGGAGGTACATTCCTCATTTGCGAGGTTTTATATTGCAGCAATGTCGCAATCCTTAATTTTACAGTCAAACATTTTTAATGCAGCTGGAGTTGCGACTTGTGATGACAAAGATGTCAAAAACCTTAATGTCTTGGCCACAGTTTTTGTCGCATACCTTTATTTAAAAAATAAAATCTTGCTTATTTGTGTGATAATTTTTTTTTGCATATTTGGAACAACAATTACAATAGATAAGAAAGGCGATTATAACAATTGAAGCTGTTTGGTTTCCATGTATTTTGTTCTGGCTCATGAAGTATTGGTTGTCTTGCAAATCAGAGTTACAAGCTCCTGGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCATAGTAAACTCAACAAAAGCTATCATTCCAACTTCACCAAAAGCCTCAACAGGTATTGCCAATGATTCTACTACTACCTTCACCGCAAGTCTACTCATGACAAAGGAAGAGGAGCAAGATAAGAAGAAGCACTTACTTAGGTTGAAATTAGGCAAGAAGATCAATGGTATTTATGGTGATTGGATTGATGATTGA
Protein sequence

>MS.gene61483.t1

MNFPDDIPTCRMSPPQFASSNNDIIEVRPQIPINNDHFEPHSFKRARIADNNPPSGLICPPSRMIQPPPNRGTSSIFFKTRICTKFRFGTCRNGENCNYAHGADEIRQPPRNWQELVDPRNDERLQMETRQPPPNWDEDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSWKTRECSAISIGNIGSPKSFGDGSNNLEGIRAVNKPARSAYWKTKLCQWQHTGSCPFGETCHFAHGEAELQAPGGGIEAEAAVAIVNSTKAIIPTSPKASTGIANDSTTTFTASLLMTKEEEQDKKKHLLRLKLGKKINGIYGDWIDD