Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61489.t1 | XP_003609285.1 | 89.2 | 600 | 43 | 2 | 1 | 584 | 1 | 594 | 5.60E-257 | 896.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61489.t1 | Q0J952 | 60.7 | 112 | 40 | 2 | 2 | 109 | 27 | 138 | 3.1e-38 | 161.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61489.t1 | G7JVC6 | 89.2 | 600 | 43 | 2 | 1 | 584 | 1 | 594 | 4.0e-257 | 896.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene61489.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61489.t1 | MTR_4g114040 | 93.167 | 600 | 19 | 2 | 1 | 584 | 1 | 594 | 0.0 | 1113 |
| MS.gene61489.t1 | MTR_4g114643 | 88.158 | 304 | 10 | 1 | 281 | 584 | 1 | 278 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61489.t1 | AT2G02160 | 61.017 | 118 | 36 | 3 | 2 | 110 | 25 | 141 | 8.02e-40 | 154 |
Find 124 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGTTGGTATTGGTTATC+TGG | 0.119856 | 8.3:-13339161 | MS.gene61489:CDS |
| CACCGATTGCGTTTATTTCT+TGG | 0.184040 | 8.3:-13339523 | MS.gene61489:CDS |
| TTGCTTCAAAATTTCTTCTT+TGG | 0.213240 | 8.3:-13337638 | MS.gene61489:CDS |
| CTTGCCTTTGATGCCTTTCC+CGG | 0.220942 | 8.3:+13337029 | None:intergenic |
| TTTGCAGAGTCATTCTTTAA+AGG | 0.222829 | 8.3:+13337967 | None:intergenic |
| TTTGCAGAGTCATTCTTTAA+AGG | 0.222829 | 8.3:+13337991 | None:intergenic |
| TTGCTTCACAATTGGTTTCC+TGG | 0.230232 | 8.3:+13336826 | None:intergenic |
| TTAATATCGGACAAAGCTTT+TGG | 0.255089 | 8.3:+13337721 | None:intergenic |
| AATAAACCCAACTTAGAAAA+TGG | 0.256208 | 8.3:-13337820 | MS.gene61489:CDS |
| CATTCAGAGGTTTGGGATCC+TGG | 0.288878 | 8.3:+13336687 | None:intergenic |
| GCTTTCTTGGCCTACTTTGC+TGG | 0.293087 | 8.3:+13336897 | None:intergenic |
| CCAACAAGCAAAGGTTATTC+AGG | 0.302583 | 8.3:-13336925 | MS.gene61489:CDS |
| ATTGTCTTGTTTGCAGTTGC+AGG | 0.306173 | 8.3:+13338156 | None:intergenic |
| GAGAATTTCATTCAGAGGTT+TGG | 0.311271 | 8.3:+13336679 | None:intergenic |
| AGAATTTCATTCAGAGGTTT+GGG | 0.313834 | 8.3:+13336680 | None:intergenic |
| TTTGCAGAGTCATTCATTAA+AGG | 0.316622 | 8.3:+13337943 | None:intergenic |
| ACATGAGTCGTCTTCTTTGA+TGG | 0.333051 | 8.3:-13337059 | MS.gene61489:CDS |
| CCTGAATAACCTTTGCTTGT+TGG | 0.334230 | 8.3:+13336925 | None:intergenic |
| CTTGGCCTACTTTGCTGGTA+AGG | 0.345619 | 8.3:+13336902 | None:intergenic |
| TTTATTTCTGCAAGAGTCTT+GGG | 0.348071 | 8.3:+13336767 | None:intergenic |
| GTTCTTGTTCATGATGAATC+TGG | 0.352114 | 8.3:-13337463 | MS.gene61489:CDS |
| CTTCTTTGATGGTTCAAAAC+CGG | 0.368582 | 8.3:-13337048 | MS.gene61489:CDS |
| ATATTTGCCAGTGCTTGATA+TGG | 0.371228 | 8.3:-13337410 | MS.gene61489:CDS |
| GCCATCTCTCACTCAATCTA+TGG | 0.380953 | 8.3:+13336646 | None:intergenic |
| AGTACTGCTCATTCAGTTCA+TGG | 0.395523 | 8.3:+13337383 | None:intergenic |
| CTTAGGCTGAGGTTTAATAT+CGG | 0.404253 | 8.3:+13337708 | None:intergenic |
| TGGGAACAACCTGGGTTATG+AGG | 0.406841 | 8.3:-13337443 | MS.gene61489:CDS |
| GGCTTAACCCGAGGGATTGT+TGG | 0.407402 | 8.3:-13339175 | MS.gene61489:CDS |
| AAGCTCGTCAGCTGGTTTCC+AGG | 0.411618 | 8.3:-13336705 | MS.gene61489:CDS |
| ATCAAGCACTGGCAAATATT+CGG | 0.411769 | 8.3:+13337414 | None:intergenic |
| GATCTCTGTTGCTTCACAAT+TGG | 0.413086 | 8.3:+13336818 | None:intergenic |
| ACCCGAGGGATTGTTGGTAT+TGG | 0.421246 | 8.3:-13339169 | MS.gene61489:CDS |
| ATTGTTGGTATTGGTTATCT+GGG | 0.423158 | 8.3:-13339160 | MS.gene61489:CDS |
| TTAGAAAATGGAACTGCATC+GGG | 0.423544 | 8.3:-13337808 | MS.gene61489:CDS |
| GAAGGAAATGGCCGTTTAGC+TGG | 0.432071 | 8.3:+13336860 | None:intergenic |
| TGAACTGAATGAGCAGTACT+TGG | 0.434200 | 8.3:-13337380 | MS.gene61489:CDS |
| AGTATCTAAGACCATCTCTC+TGG | 0.436807 | 8.3:+13337216 | None:intergenic |
| CCAGGGGAGGACCGTTCCTC+AGG | 0.438642 | 8.3:+13337493 | None:intergenic |
| TTCTTTGATGGTTCAAAACC+GGG | 0.442952 | 8.3:-13337047 | MS.gene61489:CDS |
| CTTCCATTGTCATTCTTCAA+AGG | 0.447586 | 8.3:+13337847 | None:intergenic |
| TTCCTTCTTCTAAAGAATCC+AGG | 0.454352 | 8.3:-13336844 | MS.gene61489:CDS |
| TTCCTGGATTCTTTAGAAGA+AGG | 0.458511 | 8.3:+13336842 | None:intergenic |
| CCTGAGGAACGGTCCTCCCC+TGG | 0.461925 | 8.3:-13337493 | MS.gene61489:CDS |
| TCAGGCCTTACCAGCAAAGT+AGG | 0.477593 | 8.3:-13336907 | MS.gene61489:CDS |
| CATTGTGAAAGCTCGTCAGC+TGG | 0.479616 | 8.3:-13336713 | MS.gene61489:CDS |
| GCAAAGCCATCGTCTGGTAA+TGG | 0.488256 | 8.3:+13337580 | None:intergenic |
| TGAACAAGAACATCAAATCC+AGG | 0.492763 | 8.3:+13337475 | None:intergenic |
| TGATGAATCTGGGAACAACC+TGG | 0.493882 | 8.3:-13337452 | MS.gene61489:CDS |
| CCACAAACTTTCCTTTCACT+AGG | 0.496086 | 8.3:+13337244 | None:intergenic |
| TTCACCCCTCACTTGCAAGA+AGG | 0.501218 | 8.3:-13339499 | MS.gene61489:intron |
| TGATGGTTCAAAACCGGGAA+AGG | 0.501541 | 8.3:-13337042 | MS.gene61489:CDS |
| GGTAGCTGAAGATCTTCCTT+AGG | 0.509144 | 8.3:+13337691 | None:intergenic |
| ACTCCAGTGTGTCCATCCAC+AGG | 0.509244 | 8.3:+13338207 | None:intergenic |
| CCTCCCTGCGTCTTCTCAGA+TGG | 0.509631 | 8.3:+13337116 | None:intergenic |
| CTTCTTAAGAGACCTGTGTC+AGG | 0.510576 | 8.3:+13337082 | None:intergenic |
| CTTGGGCCCTGAAAATGCAT+TGG | 0.511654 | 8.3:+13336784 | None:intergenic |
| ACAGTAAGCGAGCTATCATC+AGG | 0.513126 | 8.3:+13338066 | None:intergenic |
| GATTCTTTAGAAGAAGGAAA+TGG | 0.514362 | 8.3:+13336848 | None:intergenic |
| TTTGTAGAGTCATTCTTCAA+AGG | 0.519264 | 8.3:+13338015 | None:intergenic |
| TTTACAGTGTCATTCTTCAA+AGG | 0.519264 | 8.3:+13338039 | None:intergenic |
| TTATGAGCAAAGCCATCGTC+TGG | 0.523137 | 8.3:+13337574 | None:intergenic |
| GAAGATTGTGTAGGTTCAGA+TGG | 0.524821 | 8.3:+13338183 | None:intergenic |
| GAACTGAATGAGCAGTACTT+GGG | 0.530894 | 8.3:-13337379 | MS.gene61489:CDS |
| TTCTTGTTCATGATGAATCT+GGG | 0.535477 | 8.3:-13337462 | MS.gene61489:CDS |
| TTCACAGTGTCAATCTTCAA+AGG | 0.538247 | 8.3:+13337871 | None:intergenic |
| TTCACAGTGTCAATCTTCAA+AGG | 0.538247 | 8.3:+13337919 | None:intergenic |
| AGCCAAGAAATAAACGCAAT+CGG | 0.538661 | 8.3:+13339521 | None:intergenic |
| TTTCAATTGCCAACAAGCAA+AGG | 0.539740 | 8.3:-13336934 | MS.gene61489:CDS |
| TTGAACCTTCTTGCAAGTGA+GGG | 0.541701 | 8.3:+13339494 | None:intergenic |
| TGAAGATCTTCCTTAGGCTG+AGG | 0.541736 | 8.3:+13337697 | None:intergenic |
| CTTAGAAAATGGAACTGCAT+CGG | 0.543707 | 8.3:-13337809 | MS.gene61489:CDS |
| CCTAGTGAAAGGAAAGTTTG+TGG | 0.543844 | 8.3:-13337244 | MS.gene61489:CDS |
| CGATATTAAACCTCAGCCTA+AGG | 0.549253 | 8.3:-13337707 | MS.gene61489:CDS |
| AACCAATACCAACAATCCCT+CGG | 0.549767 | 8.3:+13339167 | None:intergenic |
| TTGGTCAGCGGCAAAATAGA+AGG | 0.550102 | 8.3:-13337003 | MS.gene61489:CDS |
| TTTGCAGAGTCATTCTTCAA+AGG | 0.551294 | 8.3:+13337895 | None:intergenic |
| ACCAATACCAACAATCCCTC+GGG | 0.552430 | 8.3:+13339168 | None:intergenic |
| GGGAACAACCTGGGTTATGA+GGG | 0.557547 | 8.3:-13337442 | MS.gene61489:CDS |
| GGTTAAGCCTCGCAATCTCA+TGG | 0.558877 | 8.3:+13339189 | None:intergenic |
| ATTGAACCTTCTTGCAAGTG+AGG | 0.561506 | 8.3:+13339493 | None:intergenic |
| AAAACCGGGAAAGGCATCAA+AGG | 0.564085 | 8.3:-13337033 | MS.gene61489:CDS |
| ACAAGCAGCCATCTCAGAAG+TGG | 0.566131 | 8.3:+13337165 | None:intergenic |
| TCTTTGAGAATTTCATTCAG+AGG | 0.567578 | 8.3:+13336674 | None:intergenic |
| TCGAATGTCCACTTCTGAGA+TGG | 0.567972 | 8.3:-13337173 | MS.gene61489:CDS |
| ATAAAGAAGCTGCTGTGACT+CGG | 0.570342 | 8.3:-13337612 | MS.gene61489:CDS |
| GATTACGACACTATGTGCTC+AGG | 0.573085 | 8.3:-13337334 | MS.gene61489:CDS |
| CAGCCTGTGGATGGACACAC+TGG | 0.576235 | 8.3:-13338210 | MS.gene61489:CDS |
| GTATCTAAGACCATCTCTCT+GGG | 0.580465 | 8.3:+13337217 | None:intergenic |
| TGGTCATCCATATCAAGCAC+TGG | 0.581438 | 8.3:+13337403 | None:intergenic |
| CCCGAAAATGTTAAACAGCA+AGG | 0.581671 | 8.3:-13337664 | MS.gene61489:CDS |
| GAACTCTGCTCAGTGCATGA+AGG | 0.586402 | 8.3:+13337544 | None:intergenic |
| AAATAGTCAAGTAGAGCCTG+AGG | 0.587572 | 8.3:-13337509 | MS.gene61489:CDS |
| GAACAAGAACATCAAATCCA+GGG | 0.590993 | 8.3:+13337476 | None:intergenic |
| ATGCACTGAGCAGAGTTCAG+AGG | 0.592492 | 8.3:-13337539 | MS.gene61489:CDS |
| GTCAATAGTCCTCCTGACAC+AGG | 0.595790 | 8.3:-13337094 | MS.gene61489:CDS |
| AGAAGGTTAACATCACAAGT+AGG | 0.600688 | 8.3:-13336986 | MS.gene61489:CDS |
| TTGTGGTTATCCCAGAGAGA+TGG | 0.602992 | 8.3:-13337227 | MS.gene61489:CDS |
| GCAGGCAATGAAGATTGTGT+AGG | 0.603065 | 8.3:+13338174 | None:intergenic |
| TGAACCTTCTTGCAAGTGAG+GGG | 0.613141 | 8.3:+13339495 | None:intergenic |
| GATGAATCTGGGAACAACCT+GGG | 0.613350 | 8.3:-13337451 | MS.gene61489:CDS |
| AGGGTGTAGAATGTGAGTAT+AGG | 0.616264 | 8.3:-13339214 | MS.gene61489:CDS |
| AGGCATCAAAGGCAAGACAT+TGG | 0.618149 | 8.3:-13337022 | MS.gene61489:CDS |
| AACAACCTGGGTTATGAGGG+CGG | 0.623566 | 8.3:-13337439 | MS.gene61489:CDS |
| TGGTTAAAATGTGTATCCCT+TGG | 0.626602 | 8.3:+13337757 | None:intergenic |
| GATTGCGAGGCTTAACCCGA+GGG | 0.627528 | 8.3:-13339183 | MS.gene61489:CDS |
| GGGTGTCTAAAAGCACAAGT+TGG | 0.629066 | 8.3:+13339125 | None:intergenic |
| TGTAGCATCATCCACACCAA+GGG | 0.637768 | 8.3:-13337773 | MS.gene61489:CDS |
| AACTGAATGAGCAGTACTTG+GGG | 0.640126 | 8.3:-13337378 | MS.gene61489:CDS |
| GTCACCATCTGAGAAGACGC+AGG | 0.644495 | 8.3:-13337120 | MS.gene61489:CDS |
| GTCAAGTAGAGCCTGAGGAA+CGG | 0.645293 | 8.3:-13337504 | MS.gene61489:CDS |
| CGGAACCGCCCTCATAACCC+AGG | 0.647720 | 8.3:+13337434 | None:intergenic |
| AAGCCTTTGAAGAATGACAA+TGG | 0.648926 | 8.3:-13337850 | MS.gene61489:CDS |
| TCACCATCTGAGAAGACGCA+GGG | 0.650947 | 8.3:-13337119 | MS.gene61489:CDS |
| CTTAAGAGACCTGTGTCAGG+AGG | 0.654168 | 8.3:+13337085 | None:intergenic |
| ATAGGCACCATGAGATTGCG+AGG | 0.657532 | 8.3:-13339196 | MS.gene61489:CDS |
| AGATTGCGAGGCTTAACCCG+AGG | 0.660519 | 8.3:-13339184 | MS.gene61489:CDS |
| TGCAACTGCAAACAAGACAA+TGG | 0.662371 | 8.3:-13338154 | MS.gene61489:CDS |
| AAAATGTGTATCCCTTGGTG+TGG | 0.666851 | 8.3:+13337762 | None:intergenic |
| GTGTAGCATCATCCACACCA+AGG | 0.671419 | 8.3:-13337774 | MS.gene61489:CDS |
| GACTCTCCATTACCAGACGA+TGG | 0.672412 | 8.3:-13337586 | MS.gene61489:CDS |
| AACAAGAACATCAAATCCAG+GGG | 0.675043 | 8.3:+13337477 | None:intergenic |
| AAGAACATCAAATCCAGGGG+AGG | 0.679312 | 8.3:+13337480 | None:intergenic |
| AAAGGCAAGACATTGGTCAG+CGG | 0.696430 | 8.3:-13337015 | MS.gene61489:CDS |
| CCATCTGAGAAGACGCAGGG+AGG | 0.719477 | 8.3:-13337116 | MS.gene61489:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGAATATGAAATT+TGG | + | chr8.3:13337901-13337920 | None:intergenic | 10.0% |
| !!! | ATGGAATAAATATAATTTTT+TGG | - | chr8.3:13337519-13337538 | MS.gene61489:CDS | 10.0% |
| !! | AAAATATCAAATTAATGAAC+AGG | - | chr8.3:13337800-13337819 | MS.gene61489:CDS | 15.0% |
| !! | TATATCAGTAAAAAAAACAT+TGG | - | chr8.3:13337272-13337291 | MS.gene61489:CDS | 15.0% |
| !!! | AATTCTGTTTTTGTTTTTAA+TGG | - | chr8.3:13336917-13336936 | MS.gene61489:CDS | 15.0% |
| !!! | TTGAAAATGTTATAATCTTT+TGG | - | chr8.3:13337179-13337198 | MS.gene61489:CDS | 15.0% |
| !! | AAAATGAATATGAAATTTGG+AGG | + | chr8.3:13337898-13337917 | None:intergenic | 20.0% |
| !! | AAATGAATATGAAATTTGGA+GGG | + | chr8.3:13337897-13337916 | None:intergenic | 20.0% |
| !! | TGTTTCTTAAAATATCAAGT+TGG | - | chr8.3:13337570-13337589 | MS.gene61489:CDS | 20.0% |
| !! | TTATATTTATTCCATTGACA+AGG | + | chr8.3:13337514-13337533 | None:intergenic | 20.0% |
| !!! | TAAATTTTTGTTCTGTAAGT+TGG | - | chr8.3:13337427-13337446 | MS.gene61489:CDS | 20.0% |
| !!! | TTTTATATATTGTTTGCATC+TGG | - | chr8.3:13337706-13337725 | MS.gene61489:CDS | 20.0% |
| ! | AATAAACCCAACTTAGAAAA+TGG | - | chr8.3:13338387-13338406 | MS.gene61489:intron | 25.0% |
| ! | AATGAATATGAAATTTGGAG+GGG | + | chr8.3:13337896-13337915 | None:intergenic | 25.0% |
| ! | CAGATAGATTAATACTAAAC+AGG | + | chr8.3:13337932-13337951 | None:intergenic | 25.0% |
| ! | GAACAAAAATTTACAAGAGA+CGG | + | chr8.3:13337420-13337439 | None:intergenic | 25.0% |
| ! | TAAGAAACATTACAAATGTG+AGG | + | chr8.3:13337306-13337325 | None:intergenic | 25.0% |
| ! | TACTGATATACAATACATCA+AGG | + | chr8.3:13337262-13337281 | None:intergenic | 25.0% |
| ! | TTCATCCAAGAAATCAATTA+AGG | + | chr8.3:13337765-13337784 | None:intergenic | 25.0% |
| ! | TTGCTTCAAAATTTCTTCTT+TGG | - | chr8.3:13338569-13338588 | MS.gene61489:intron | 25.0% |
| !! | AATTGATTTCTTGGATGAAT+AGG | - | chr8.3:13337766-13337785 | MS.gene61489:CDS | 25.0% |
| !! | ATACTATATTTTCCAGGAAA+AGG | - | chr8.3:13339009-13339028 | MS.gene61489:intron | 25.0% |
| !! | TCTTAGATACTATATTTTCC+AGG | - | chr8.3:13339003-13339022 | MS.gene61489:intron | 25.0% |
| !!! | ATGATTACAGATGTTTTGAT+AGG | - | chr8.3:13338928-13338947 | MS.gene61489:intron | 25.0% |
| !!! | TGATTACAGATGTTTTGATA+GGG | - | chr8.3:13338929-13338948 | MS.gene61489:intron | 25.0% |
| AAAATTAGATGAAAGTGACG+AGG | + | chr8.3:13337966-13337985 | None:intergenic | 30.0% | |
| AAAGAAGAGAAGAAAAAGTC+TGG | - | chr8.3:13339461-13339480 | MS.gene61489:intron | 30.0% | |
| AAATCATCAAAACACTTGCA+AGG | + | chr8.3:13337737-13337756 | None:intergenic | 30.0% | |
| AGAATTTCATTCAGAGGTTT+GGG | + | chr8.3:13339530-13339549 | None:intergenic | 30.0% | |
| ATAGAGAAAAACCAGCTAAA+CGG | - | chr8.3:13339336-13339355 | MS.gene61489:intron | 30.0% | |
| ATCGAAAATGTGACGAAAAT+AGG | + | chr8.3:13336812-13336831 | None:intergenic | 30.0% | |
| ATGAATATGAAATTTGGAGG+GGG | + | chr8.3:13337895-13337914 | None:intergenic | 30.0% | |
| CCATTGAAGAAAAAGTAACA+GGG | + | chr8.3:13338081-13338100 | None:intergenic | 30.0% | |
| CCTGCAAACAAAATAAACAA+CGG | + | chr8.3:13336976-13336995 | None:intergenic | 30.0% | |
| GAAAATGTAACCTAACTGAA+CGG | + | chr8.3:13336858-13336877 | None:intergenic | 30.0% | |
| TCGAAAATGTGACGAAAATA+GGG | + | chr8.3:13336811-13336830 | None:intergenic | 30.0% | |
| TTCTTGTTCATGATGAATCT+GGG | - | chr8.3:13338745-13338764 | MS.gene61489:intron | 30.0% | |
| TTTGCAGAGTCATTCATTAA+AGG | + | chr8.3:13338267-13338286 | None:intergenic | 30.0% | |
| TTTGCAGAGTCATTCTTTAA+AGG | + | chr8.3:13338219-13338238 | None:intergenic | 30.0% | |
| TTTGTAGAGTCATTCTTCAA+AGG | + | chr8.3:13338195-13338214 | None:intergenic | 30.0% | |
| ! | AGAAATCCAATGCATTTTCA+GGG | - | chr8.3:13339417-13339436 | MS.gene61489:intron | 30.0% |
| ! | ATTTTACTAGTCCTAGTGAA+AGG | - | chr8.3:13338952-13338971 | MS.gene61489:intron | 30.0% |
| ! | GATTCTTTAGAAGAAGGAAA+TGG | + | chr8.3:13339362-13339381 | None:intergenic | 30.0% |
| ! | TCTTTGAGAATTTCATTCAG+AGG | + | chr8.3:13339536-13339555 | None:intergenic | 30.0% |
| ! | TGGTTCCTTAATTGATTTCT+TGG | - | chr8.3:13337757-13337776 | MS.gene61489:CDS | 30.0% |
| ! | TTAATATCGGACAAAGCTTT+TGG | + | chr8.3:13338489-13338508 | None:intergenic | 30.0% |
| ! | TTTACAGTGTCATTCTTCAA+AGG | + | chr8.3:13338171-13338190 | None:intergenic | 30.0% |
| ! | TTTTCTCTATAGTGCTTTCT+TGG | + | chr8.3:13339326-13339345 | None:intergenic | 30.0% |
| !! | ATTGTTGGTATTGGTTATCT+GGG | - | chr8.3:13337047-13337066 | MS.gene61489:CDS | 30.0% |
| !! | ATTTTTGTTCTGTAAGTTGG+TGG | - | chr8.3:13337430-13337449 | MS.gene61489:CDS | 30.0% |
| !! | TTTATTTCTGCAAGAGTCTT+GGG | + | chr8.3:13339443-13339462 | None:intergenic | 30.0% |
| !!! | ACCTTGCTGTTTAACATTTT+CGG | + | chr8.3:13338547-13338566 | None:intergenic | 30.0% |
| !!! | CCTGTTACTTTTTCTTCAAT+GGG | - | chr8.3:13338079-13338098 | MS.gene61489:CDS | 30.0% |
| !!! | CGTTGTTTATTTTGTTTGCA+GGG | - | chr8.3:13336974-13336993 | MS.gene61489:CDS | 30.0% |
| !!! | GTACTTTTTTTCGCTTATGT+GGG | - | chr8.3:13337147-13337166 | MS.gene61489:CDS | 30.0% |
| !!! | TCTTTTGGACTTAATTTGCA+CGG | - | chr8.3:13337194-13337213 | MS.gene61489:CDS | 30.0% |
| !!! | TGCAAGTGTTTTGATGATTT+TGG | - | chr8.3:13337737-13337756 | MS.gene61489:CDS | 30.0% |
| !!! | TGTTTAACATTTTCGGGTAA+TGG | + | chr8.3:13338540-13338559 | None:intergenic | 30.0% |
| !!! | TTTTATTTCTGCAAGAGTCT+TGG | + | chr8.3:13339444-13339463 | None:intergenic | 30.0% |
| AACAAGAACATCAAATCCAG+GGG | + | chr8.3:13338733-13338752 | None:intergenic | 35.0% | |
| ACTATAGGTAAAATGCAGCT+CGG | + | chr8.3:13337363-13337382 | None:intergenic | 35.0% | |
| AGAAGGTTAACATCACAAGT+AGG | - | chr8.3:13339221-13339240 | MS.gene61489:intron | 35.0% | |
| AGCCAAGAAATAAACGCAAT+CGG | + | chr8.3:13336689-13336708 | None:intergenic | 35.0% | |
| ATATTTGCCAGTGCTTGATA+TGG | - | chr8.3:13338797-13338816 | MS.gene61489:intron | 35.0% | |
| CATTACAAATGTGAGGACTA+AGG | + | chr8.3:13337299-13337318 | None:intergenic | 35.0% | |
| CCCATTGAAGAAAAAGTAAC+AGG | + | chr8.3:13338082-13338101 | None:intergenic | 35.0% | |
| CTTAGAAAATGGAACTGCAT+CGG | - | chr8.3:13338398-13338417 | MS.gene61489:intron | 35.0% | |
| CTTAGGCTGAGGTTTAATAT+CGG | + | chr8.3:13338502-13338521 | None:intergenic | 35.0% | |
| CTTCCATTGTCATTCTTCAA+AGG | + | chr8.3:13338363-13338382 | None:intergenic | 35.0% | |
| GAACAAGAACATCAAATCCA+GGG | + | chr8.3:13338734-13338753 | None:intergenic | 35.0% | |
| GAGAATTTCATTCAGAGGTT+TGG | + | chr8.3:13339531-13339550 | None:intergenic | 35.0% | |
| GTTCTTGTTCATGATGAATC+TGG | - | chr8.3:13338744-13338763 | MS.gene61489:intron | 35.0% | |
| TGAACAAGAACATCAAATCC+AGG | + | chr8.3:13338735-13338754 | None:intergenic | 35.0% | |
| TGAACGCTTCTGTGTTTAAA+TGG | - | chr8.3:13337337-13337356 | MS.gene61489:CDS | 35.0% | |
| TGGTTAAAATGTGTATCCCT+TGG | + | chr8.3:13338453-13338472 | None:intergenic | 35.0% | |
| TTAGAAAATGGAACTGCATC+GGG | - | chr8.3:13338399-13338418 | MS.gene61489:intron | 35.0% | |
| TTCACAGTGTCAATCTTCAA+AGG | + | chr8.3:13338291-13338310 | None:intergenic | 35.0% | |
| TTTCAATTGCCAACAAGCAA+AGG | - | chr8.3:13339273-13339292 | MS.gene61489:intron | 35.0% | |
| TTTGCAGAGTCATTCTTCAA+AGG | + | chr8.3:13338315-13338334 | None:intergenic | 35.0% | |
| ! | AAGCCTTTGAAGAATGACAA+TGG | - | chr8.3:13338357-13338376 | MS.gene61489:intron | 35.0% |
| ! | CAGAAATCCAATGCATTTTC+AGG | - | chr8.3:13339416-13339435 | MS.gene61489:intron | 35.0% |
| ! | CTTCTTTGATGGTTCAAAAC+CGG | - | chr8.3:13339159-13339178 | MS.gene61489:CDS | 35.0% |
| ! | GCAGTTCCATTTTCTAAGTT+GGG | + | chr8.3:13338396-13338415 | None:intergenic | 35.0% |
| ! | TGCAGTTCCATTTTCTAAGT+TGG | + | chr8.3:13338397-13338416 | None:intergenic | 35.0% |
| ! | TTCCTGGATTCTTTAGAAGA+AGG | + | chr8.3:13339368-13339387 | None:intergenic | 35.0% |
| ! | TTCCTTCTTCTAAAGAATCC+AGG | - | chr8.3:13339363-13339382 | MS.gene61489:intron | 35.0% |
| ! | TTCTTTGATGGTTCAAAACC+GGG | - | chr8.3:13339160-13339179 | MS.gene61489:CDS | 35.0% |
| ! | TTTGTAATTTTGTCAGCCTG+TGG | - | chr8.3:13337984-13338003 | MS.gene61489:CDS | 35.0% |
| ! | TTTTGTCCAATTGTTGAGTC+AGG | + | chr8.3:13337671-13337690 | None:intergenic | 35.0% |
| !! | AGCAAATGCTCATTTTTGCA+TGG | - | chr8.3:13338117-13338136 | MS.gene61489:CDS | 35.0% |
| !! | ATCAAGCACTGGCAAATATT+CGG | + | chr8.3:13338796-13338815 | None:intergenic | 35.0% |
| !! | GATTGTTGGTATTGGTTATC+TGG | - | chr8.3:13337046-13337065 | MS.gene61489:CDS | 35.0% |
| !! | TTAATTTGCACGGTTAGGTT+AGG | - | chr8.3:13337204-13337223 | MS.gene61489:CDS | 35.0% |
| !! | TTCAATGGGTTTTGCAACAA+AGG | - | chr8.3:13338093-13338112 | MS.gene61489:CDS | 35.0% |
| !!! | CCCTGTTACTTTTTCTTCAA+TGG | - | chr8.3:13338078-13338097 | MS.gene61489:CDS | 35.0% |
| !!! | CCGTTGTTTATTTTGTTTGC+AGG | - | chr8.3:13336973-13336992 | MS.gene61489:CDS | 35.0% |
| !!! | CCTTGCTGTTTAACATTTTC+GGG | + | chr8.3:13338546-13338565 | None:intergenic | 35.0% |
| !!! | CTTTTGGAGCAGATAAAGAT+TGG | + | chr8.3:13338473-13338492 | None:intergenic | 35.0% |
| !!! | GGTACTTTTTTTCGCTTATG+TGG | - | chr8.3:13337146-13337165 | MS.gene61489:CDS | 35.0% |
| AAAATGTGTATCCCTTGGTG+TGG | + | chr8.3:13338448-13338467 | None:intergenic | 40.0% | |
| AAATAGTCAAGTAGAGCCTG+AGG | - | chr8.3:13338698-13338717 | MS.gene61489:intron | 40.0% | |
| AACCAATACCAACAATCCCT+CGG | + | chr8.3:13337043-13337062 | None:intergenic | 40.0% | |
| AACTGAATGAGCAGTACTTG+GGG | - | chr8.3:13338829-13338848 | MS.gene61489:intron | 40.0% | |
| AATTGAATTCGCGATTGCGA+AGG | + | chr8.3:13336748-13336767 | None:intergenic | 40.0% | |
| ACATGAGTCGTCTTCTTTGA+TGG | - | chr8.3:13339148-13339167 | MS.gene61489:CDS | 40.0% | |
| AGGCACAATGAAAAACTCAC+AGG | + | chr8.3:13337106-13337125 | None:intergenic | 40.0% | |
| AGGGTGTAGAATGTGAGTAT+AGG | - | chr8.3:13336993-13337012 | MS.gene61489:CDS | 40.0% | |
| AGTACTGCTCATTCAGTTCA+TGG | + | chr8.3:13338827-13338846 | None:intergenic | 40.0% | |
| ATAAAGAAGCTGCTGTGACT+CGG | - | chr8.3:13338595-13338614 | MS.gene61489:intron | 40.0% | |
| ATTGAACCTTCTTGCAAGTG+AGG | + | chr8.3:13336717-13336736 | None:intergenic | 40.0% | |
| ATTGAATTCGCGATTGCGAA+GGG | + | chr8.3:13336747-13336766 | None:intergenic | 40.0% | |
| CCAACAAGCAAAGGTTATTC+AGG | - | chr8.3:13339282-13339301 | MS.gene61489:intron | 40.0% | |
| CCACAAACTTTCCTTTCACT+AGG | + | chr8.3:13338966-13338985 | None:intergenic | 40.0% | |
| CCCGAAAATGTTAAACAGCA+AGG | - | chr8.3:13338543-13338562 | MS.gene61489:intron | 40.0% | |
| CCTAGTGAAAGGAAAGTTTG+TGG | - | chr8.3:13338963-13338982 | MS.gene61489:intron | 40.0% | |
| CCTGAATAACCTTTGCTTGT+TGG | + | chr8.3:13339285-13339304 | None:intergenic | 40.0% | |
| CGATATTAAACCTCAGCCTA+AGG | - | chr8.3:13338500-13338519 | MS.gene61489:intron | 40.0% | |
| GAACTGAATGAGCAGTACTT+GGG | - | chr8.3:13338828-13338847 | MS.gene61489:intron | 40.0% | |
| GAAGATTGTGTAGGTTCAGA+TGG | + | chr8.3:13338027-13338046 | None:intergenic | 40.0% | |
| GGCACAATGAAAAACTCACA+GGG | + | chr8.3:13337105-13337124 | None:intergenic | 40.0% | |
| GGTTCGATGTGTCAGATTAA+AGG | - | chr8.3:13337234-13337253 | MS.gene61489:CDS | 40.0% | |
| TCCAATTGTTGAGTCAGGAT+GGG | + | chr8.3:13337666-13337685 | None:intergenic | 40.0% | |
| TGAACTGAATGAGCAGTACT+TGG | - | chr8.3:13338827-13338846 | MS.gene61489:intron | 40.0% | |
| TGCAACTGCAAACAAGACAA+TGG | - | chr8.3:13338053-13338072 | MS.gene61489:CDS | 40.0% | |
| TGCATGTACTTCCTTGTCAA+TGG | - | chr8.3:13337500-13337519 | MS.gene61489:CDS | 40.0% | |
| TTGAACCTTCTTGCAAGTGA+GGG | + | chr8.3:13336716-13336735 | None:intergenic | 40.0% | |
| TTGCATTTGCACTTCTCGAT+TGG | - | chr8.3:13337125-13337144 | MS.gene61489:CDS | 40.0% | |
| ! | AATCGAGAAGTGCAAATGCA+AGG | + | chr8.3:13337126-13337145 | None:intergenic | 40.0% |
| ! | ACGGTTAGGTTAGGTTTTTG+TGG | - | chr8.3:13337213-13337232 | MS.gene61489:CDS | 40.0% |
| ! | AGTATCTAAGACCATCTCTC+TGG | + | chr8.3:13338994-13339013 | None:intergenic | 40.0% |
| ! | CACCGATTGCGTTTATTTCT+TGG | - | chr8.3:13336684-13336703 | MS.gene61489:CDS | 40.0% |
| ! | GATCTCTGTTGCTTCACAAT+TGG | + | chr8.3:13339392-13339411 | None:intergenic | 40.0% |
| ! | GTATCTAAGACCATCTCTCT+GGG | + | chr8.3:13338993-13339012 | None:intergenic | 40.0% |
| ! | TAATTTTGTCAGCCTGTGGA+TGG | - | chr8.3:13337988-13338007 | MS.gene61489:CDS | 40.0% |
| ! | TTGCTTCACAATTGGTTTCC+TGG | + | chr8.3:13339384-13339403 | None:intergenic | 40.0% |
| !! | ATTGTCTTGTTTGCAGTTGC+AGG | + | chr8.3:13338054-13338073 | None:intergenic | 40.0% |
| !! | GCTTTTGTTTCCGTTCAGTT+AGG | - | chr8.3:13336845-13336864 | MS.gene61489:CDS | 40.0% |
| !! | TGGACTTAATTTGCACGGTT+AGG | - | chr8.3:13337199-13337218 | MS.gene61489:CDS | 40.0% |
| !!! | AGACACTTTTTCCATCACAC+AGG | + | chr8.3:13337389-13337408 | None:intergenic | 40.0% |
| AAAGGCAAGACATTGGTCAG+CGG | - | chr8.3:13339192-13339211 | MS.gene61489:CDS | 45.0% | |
| AAGAACATCAAATCCAGGGG+AGG | + | chr8.3:13338730-13338749 | None:intergenic | 45.0% | |
| ACAGTAAGCGAGCTATCATC+AGG | + | chr8.3:13338144-13338163 | None:intergenic | 45.0% | |
| ACCAATACCAACAATCCCTC+GGG | + | chr8.3:13337042-13337061 | None:intergenic | 45.0% | |
| ACCCATCCTGACTCAACAAT+TGG | - | chr8.3:13337662-13337681 | MS.gene61489:CDS | 45.0% | |
| AGGCATCAAAGGCAAGACAT+TGG | - | chr8.3:13339185-13339204 | MS.gene61489:CDS | 45.0% | |
| ATGAAATTTGGAGGGGGAGT+GGG | + | chr8.3:13337889-13337908 | None:intergenic | 45.0% | |
| CCATCACACAGGTTCACTAT+AGG | + | chr8.3:13337378-13337397 | None:intergenic | 45.0% | |
| CCTATAGTGAACCTGTGTGA+TGG | - | chr8.3:13337375-13337394 | MS.gene61489:CDS | 45.0% | |
| CTTCTTAAGAGACCTGTGTC+AGG | + | chr8.3:13339128-13339147 | None:intergenic | 45.0% | |
| GATGAATCTGGGAACAACCT+GGG | - | chr8.3:13338756-13338775 | MS.gene61489:intron | 45.0% | |
| GATTACGACACTATGTGCTC+AGG | - | chr8.3:13338873-13338892 | MS.gene61489:intron | 45.0% | |
| GCAGGCAATGAAGATTGTGT+AGG | + | chr8.3:13338036-13338055 | None:intergenic | 45.0% | |
| GGTAGCTGAAGATCTTCCTT+AGG | + | chr8.3:13338519-13338538 | None:intergenic | 45.0% | |
| GTCCAATTGTTGAGTCAGGA+TGG | + | chr8.3:13337667-13337686 | None:intergenic | 45.0% | |
| TATGAAATTTGGAGGGGGAG+TGG | + | chr8.3:13337890-13337909 | None:intergenic | 45.0% | |
| TGAACCTTCTTGCAAGTGAG+GGG | + | chr8.3:13336715-13336734 | None:intergenic | 45.0% | |
| TGAAGATCTTCCTTAGGCTG+AGG | + | chr8.3:13338513-13338532 | None:intergenic | 45.0% | |
| TGATGAATCTGGGAACAACC+TGG | - | chr8.3:13338755-13338774 | MS.gene61489:intron | 45.0% | |
| TGATGGTTCAAAACCGGGAA+AGG | - | chr8.3:13339165-13339184 | MS.gene61489:CDS | 45.0% | |
| TGGTCATCCATATCAAGCAC+TGG | + | chr8.3:13338807-13338826 | None:intergenic | 45.0% | |
| TGTAGCATCATCCACACCAA+GGG | - | chr8.3:13338434-13338453 | MS.gene61489:intron | 45.0% | |
| TTATGAGCAAAGCCATCGTC+TGG | + | chr8.3:13338636-13338655 | None:intergenic | 45.0% | |
| TTGGTCAGCGGCAAAATAGA+AGG | - | chr8.3:13339204-13339223 | MS.gene61489:CDS | 45.0% | |
| TTGTGGTTATCCCAGAGAGA+TGG | - | chr8.3:13338980-13338999 | MS.gene61489:intron | 45.0% | |
| ! | GGACATTCGAATCCTTTTCC+TGG | + | chr8.3:13339024-13339043 | None:intergenic | 45.0% |
| ! | GGGTGTCTAAAAGCACAAGT+TGG | + | chr8.3:13337085-13337104 | None:intergenic | 45.0% |
| ! | TCGAATGTCCACTTCTGAGA+TGG | - | chr8.3:13339034-13339053 | MS.gene61489:intron | 45.0% |
| !! | AAAACCGGGAAAGGCATCAA+AGG | - | chr8.3:13339174-13339193 | MS.gene61489:CDS | 45.0% |
| AACAACCTGGGTTATGAGGG+CGG | - | chr8.3:13338768-13338787 | MS.gene61489:intron | 50.0% | |
| ACAAGCAGCCATCTCAGAAG+TGG | + | chr8.3:13339045-13339064 | None:intergenic | 50.0% | |
| ACCCGAGGGATTGTTGGTAT+TGG | - | chr8.3:13337038-13337057 | MS.gene61489:CDS | 50.0% | |
| ATAGGCACCATGAGATTGCG+AGG | - | chr8.3:13337011-13337030 | MS.gene61489:CDS | 50.0% | |
| ATGCACTGAGCAGAGTTCAG+AGG | - | chr8.3:13338668-13338687 | MS.gene61489:intron | 50.0% | |
| CATTGTGAAAGCTCGTCAGC+TGG | - | chr8.3:13339494-13339513 | MS.gene61489:intron | 50.0% | |
| CTTAAGAGACCTGTGTCAGG+AGG | + | chr8.3:13339125-13339144 | None:intergenic | 50.0% | |
| CTTGCCTTTGATGCCTTTCC+CGG | + | chr8.3:13339181-13339200 | None:intergenic | 50.0% | |
| CTTGGCCTACTTTGCTGGTA+AGG | + | chr8.3:13339308-13339327 | None:intergenic | 50.0% | |
| CTTGGGCCCTGAAAATGCAT+TGG | + | chr8.3:13339426-13339445 | None:intergenic | 50.0% | |
| GAACTCTGCTCAGTGCATGA+AGG | + | chr8.3:13338666-13338685 | None:intergenic | 50.0% | |
| GAAGGAAATGGCCGTTTAGC+TGG | + | chr8.3:13339350-13339369 | None:intergenic | 50.0% | |
| GACTCTCCATTACCAGACGA+TGG | - | chr8.3:13338621-13338640 | MS.gene61489:intron | 50.0% | |
| GCAAAGCCATCGTCTGGTAA+TGG | + | chr8.3:13338630-13338649 | None:intergenic | 50.0% | |
| GCTTTCTTGGCCTACTTTGC+TGG | + | chr8.3:13339313-13339332 | None:intergenic | 50.0% | |
| GGGAACAACCTGGGTTATGA+GGG | - | chr8.3:13338765-13338784 | MS.gene61489:intron | 50.0% | |
| GGTTAAGCCTCGCAATCTCA+TGG | + | chr8.3:13337021-13337040 | None:intergenic | 50.0% | |
| GTCAAGTAGAGCCTGAGGAA+CGG | - | chr8.3:13338703-13338722 | MS.gene61489:intron | 50.0% | |
| GTCAATAGTCCTCCTGACAC+AGG | - | chr8.3:13339113-13339132 | MS.gene61489:intron | 50.0% | |
| GTGTAGCATCATCCACACCA+AGG | - | chr8.3:13338433-13338452 | MS.gene61489:intron | 50.0% | |
| TCACCATCTGAGAAGACGCA+GGG | - | chr8.3:13339088-13339107 | MS.gene61489:intron | 50.0% | |
| TCAGGCCTTACCAGCAAAGT+AGG | - | chr8.3:13339300-13339319 | MS.gene61489:intron | 50.0% | |
| TGAAATTTGGAGGGGGAGTG+GGG | + | chr8.3:13337888-13337907 | None:intergenic | 50.0% | |
| TGGGAACAACCTGGGTTATG+AGG | - | chr8.3:13338764-13338783 | MS.gene61489:intron | 50.0% | |
| TTCACCCCTCACTTGCAAGA+AGG | - | chr8.3:13336708-13336727 | MS.gene61489:CDS | 50.0% | |
| ! | CATTCAGAGGTTTGGGATCC+TGG | + | chr8.3:13339523-13339542 | None:intergenic | 50.0% |
| !! | GTTCTGTAAGTTGGTGGCGA+TGG | - | chr8.3:13337436-13337455 | MS.gene61489:CDS | 50.0% |
| ACTCCAGTGTGTCCATCCAC+AGG | + | chr8.3:13338003-13338022 | None:intergenic | 55.0% | |
| AGATTGCGAGGCTTAACCCG+AGG | - | chr8.3:13337023-13337042 | MS.gene61489:CDS | 55.0% | |
| GATTGCGAGGCTTAACCCGA+GGG | - | chr8.3:13337024-13337043 | MS.gene61489:CDS | 55.0% | |
| GGCTTAACCCGAGGGATTGT+TGG | - | chr8.3:13337032-13337051 | MS.gene61489:CDS | 55.0% | |
| GTCACCATCTGAGAAGACGC+AGG | - | chr8.3:13339087-13339106 | MS.gene61489:intron | 55.0% | |
| ! | AAGCTCGTCAGCTGGTTTCC+AGG | - | chr8.3:13339502-13339521 | MS.gene61489:CDS | 55.0% |
| CAGCCTGTGGATGGACACAC+TGG | - | chr8.3:13337997-13338016 | MS.gene61489:CDS | 60.0% | |
| CCATCTGAGAAGACGCAGGG+AGG | - | chr8.3:13339091-13339110 | MS.gene61489:intron | 60.0% | |
| CCTCCCTGCGTCTTCTCAGA+TGG | + | chr8.3:13339094-13339113 | None:intergenic | 60.0% | |
| CGGAACCGCCCTCATAACCC+AGG | + | chr8.3:13338776-13338795 | None:intergenic | 65.0% | |
| CCAGGGGAGGACCGTTCCTC+AGG | + | chr8.3:13338717-13338736 | None:intergenic | 70.0% | |
| CCTGAGGAACGGTCCTCCCC+TGG | - | chr8.3:13338714-13338733 | MS.gene61489:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13336658 | 13339571 | 13336658 | ID=MS.gene61489 |
| chr8.3 | mRNA | 13336658 | 13339571 | 13336658 | ID=MS.gene61489.t1;Parent=MS.gene61489 |
| chr8.3 | exon | 13339500 | 13339571 | 13339500 | ID=MS.gene61489.t1.exon1;Parent=MS.gene61489.t1 |
| chr8.3 | CDS | 13339500 | 13339571 | 13339500 | ID=cds.MS.gene61489.t1;Parent=MS.gene61489.t1 |
| chr8.3 | exon | 13339124 | 13339234 | 13339124 | ID=MS.gene61489.t1.exon2;Parent=MS.gene61489.t1 |
| chr8.3 | CDS | 13339124 | 13339234 | 13339124 | ID=cds.MS.gene61489.t1;Parent=MS.gene61489.t1 |
| chr8.3 | exon | 13336658 | 13338229 | 13336658 | ID=MS.gene61489.t1.exon3;Parent=MS.gene61489.t1 |
| chr8.3 | CDS | 13336658 | 13338229 | 13336658 | ID=cds.MS.gene61489.t1;Parent=MS.gene61489.t1 |
| Gene Sequence |
| Protein sequence |
