AlfalfaGEDB | MS.gene61510

M. sativa cultivar XinJiangDaYe / MS.gene61510

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61510.t1	XP_004508500.1	81	784	140	7	10	784	25	808	0.00E+00	1283.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61510.t1	Q7FAZ3	40.6	825	411	28	5	781	14	807	4.9e-140	500.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61510.t1	A0A1S2YQV1	81.0	784	140	7	10	784	25	808	0.0e+00	1283.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61510.t1	MTR_4g114270	79.723	794	151	6	1	784	17	810	0.0	1276
MS.gene61510.t1	MTR_4g114250	77.792	797	163	9	1	784	17	812	0.0	1235
MS.gene61510.t1	MTR_4g114240	43.489	814	417	18	1	779	17	822	0.0	631
MS.gene61510.t1	MTR_4g114280	43.247	807	400	24	20	777	37	834	0.0	599
MS.gene61510.t1	MTR_5g013130	40.691	811	392	27	20	781	25	795	0.0	542
MS.gene61510.t1	MTR_5g013070	39.477	803	421	23	20	783	24	800	1.49e-179	535
MS.gene61510.t1	MTR_2g067980	38.896	797	425	23	16	779	257	1024	3.28e-170	518
MS.gene61510.t1	MTR_8g011370	38.308	804	428	25	20	780	29	807	2.56e-164	496
MS.gene61510.t1	MTR_2g067990	38.677	786	433	25	20	779	238	1000	1.86e-163	499
MS.gene61510.t1	MTR_8g011410	37.531	802	441	27	10	773	23	802	6.35e-153	473

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61510.t1	AT5G24080	36.658	802	455	25	19	781	29	816	3.28e-129	406
MS.gene61510.t1	AT1G34300	34.391	788	444	26	22	781	28	770	3.01e-118	377
MS.gene61510.t1	AT5G24080	37.233	701	392	21	117	781	1	689	6.70e-116	368
MS.gene61510.t1	AT5G24080	37.233	701	392	21	117	781	1	689	6.70e-116	368
MS.gene61510.t1	AT4G32300	32.509	809	448	31	15	777	18	774	1.01e-103	338
MS.gene61510.t1	AT2G19130	33.502	791	437	30	37	784	39	783	5.88e-100	328
MS.gene61510.t1	AT4G00340	33.771	761	443	21	37	769	34	761	2.86e-99	326
MS.gene61510.t1	AT4G00340	33.860	759	424	22	37	769	34	740	4.43e-99	325
MS.gene61510.t1	AT1G61480	31.351	807	454	31	20	779	26	779	1.18e-84	286
MS.gene61510.t1	AT1G61490	30.403	819	464	32	3	779	19	773	4.12e-84	285

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Find 189 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGCTGCAAGAAACA+AGG	0.616522	8.3:-13137379	MS.gene61510:CDS
AAAAGCAAATAGGCCAGAAT+GGG	0.514010	8.3:+13138416	None:intergenic
AAACAGGTTTACTGCAAATC+AGG	0.413884	8.3:-13137888	MS.gene61510:CDS
AAACCCTCTTACATCACATG+TGG	0.678946	8.3:+13137690	None:intergenic
AAACCTTCCAGTTGAATGAT+TGG	0.365596	8.3:+13138038	None:intergenic
AAAGCAGAGTGTAGAGGTGA+TGG	0.505985	8.3:-13137550	MS.gene61510:CDS
AAAGTTCCCAGAGTCAAGCA+TGG	0.645750	8.3:+13138182	None:intergenic
AAATTGTAGCTTTACAGTTG+AGG	0.547736	8.3:+13138290	None:intergenic
AACACCACACCCTTCATTGT+TGG	0.423378	8.3:+13136257	None:intergenic
AAGACCAAAATCAGATATCT+TGG	0.426986	8.3:+13136616	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACCAAAATCAGATATCT+TGG	+	chr8.3:13138111-13138130	None:intergenic	30.0%
AAGCTACAATTTACCATGAA+TGG	-	chr8.3:13136445-13136464	MS.gene61510:CDS	30.0%
AATCATTTCAAGGAAGAGTT+GGG	-	chr8.3:13137693-13137712	MS.gene61510:CDS	30.0%
AATCTTATACATGTAATGGC+TGG	+	chr8.3:13137568-13137587	None:intergenic	30.0%
AGAAGAACAGAACAATAGTA+TGG	-	chr8.3:13136383-13136402	MS.gene61510:CDS	30.0%
AGCCATTGATAAAAATGTCA+TGG	-	chr8.3:13138391-13138410	MS.gene61510:CDS	30.0%
CATCTTTACATCAACAAAAC+AGG	-	chr8.3:13136820-13136839	MS.gene61510:CDS	30.0%
CCATTACATGTATAAGATTC+GGG	-	chr8.3:13137569-13137588	MS.gene61510:CDS	30.0%
GATAAAAGCCAAAAGCAAAT+AGG	+	chr8.3:13136321-13136340	None:intergenic	30.0%
GCCATTACATGTATAAGATT+CGG	-	chr8.3:13137568-13137587	MS.gene61510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	13136196	13138550	13136196	ID=MS.gene61510
chr8.3	mRNA	13136196	13138550	13136196	ID=MS.gene61510.t1;Parent=MS.gene61510
chr8.3	exon	13136196	13138550	13136196	ID=MS.gene61510.t1.exon1;Parent=MS.gene61510.t1
chr8.3	CDS	13136196	13138550	13136196	ID=cds.MS.gene61510.t1;Parent=MS.gene61510.t1

Gene Sequence

>MS.gene61510

ATGTCCTTATCATTAGCAAGTACTGGAGCTCAAACAAAAACACCACTATCAGAGCGGATAACTCCTGGCTCCTCTCTTTCCCCTGGAAGTTCTCACTCATCTTCATGGCTTTCCCATTCTGGCCTATTTGCTTTTGGCTTTTATCCACAAGAAAATGGCTTTGCCATTGGAATTTGGTTGGTTGGCAAGAAGAACAGAACAATAGTATGGAGTGCAAACCGGGATGATCCTCCGGTAACCTCAACTGTAAAGCTACAATTTACCATGAATGGTACACTGATACTAACTAATCAGGAAGGACAAGAGAAGCTTATTGTTAATGCTAATGCAAGAGCTTCCTCTGCCTCCATGCTTGACTCTGGGAACTTTGTACTATACGATGACAATAATTCAAGCATCGTATGGCAGAGTTTTGATCACCCAACTGATACTTTGTTGGGGAGCCAATCTCTACCATGTGGAGGTCAACTGTCCTCTAGTTTATCAGAGACCAATCATTCAACTGGAAGGTTTCAACTCAACATGCAGGGTGATGGAAATCTTGTTCTGTATGCAGCATACACAGCTAATACACCATGGGATGCTTATTGGGCCTCTAGTACTGTCAGTGGCAATGTAAAATATCATCTTTACATCAACAAAACAGGTTTACTGCAAATCAGGAATAGCAGCAGTGATTCTAAAGTGATTACCACTTTGTTTGATAATGAAGAAGACCAAAACACTGGAGAGCCGACAATCTATCGTGCAACCCTTGATTTTGATGGGGTTTTCCGGTTATATGCTCATCACACTAACAATGGCAGTTCCAGAAGTCTCAAAAATTTTCCAGATAGCACCACATGTGATGTAAGAGGGTTTTGTGGCTACAACAGTTACTGCACATTCTATGACAACAAACCAGTGTGCATTTGTCTCATGGGTTATAAATATATAGATGAAAACGAAGATACTCTTGGCTGCGAAAGGAACTATTCAAAAGCAGAGTGTAGAGGTGATGGAGATGGTGTGGCCTTTTATAACATGGTCTCGATGGACAGTATAGTTTGGAATGATCGTCCTTATTACGTATATGAAACTATGTCATCAAAGGAAGAATGCTCATTTGCTTGTTTGGTTGATTGCAACTGCTGGGCTTCACTTTATGAAAAAACAAGCTGCAAGAAACAAGGACTGCCTTTGAGATATGCAAAACGAACAAATGAAGCTGACATTTCTACCACGGCTTTCTTAAAGGTTGGAAACAACAGCATCCAAAAACCTTCTGATTTTCCGCTTCCAATCAAGAGTACAAGTAACAAAGCAGTAGTGCATATAATTGTTGTTACGTCTGTCTTTAGTATCGTTTTGTGTTCAGCGATTTTTGTGTCCAGCCATTACATGTATAAGATTCGGGTATTAAAGTACAAAAGGCTAACAGACACTTGGAACTTTGGAGGGCTGAATGAAGAGGTGTCTTTGATAAGATTTACATACAATGAGCTGAGAAGAGCAACGAATCATTTCAAGGAAGAGTTGGGTAAGGGCTCTTTCGGAGCAGTTTACAAAGGGGCCTTAAACAAAGGTAAGAGATTGATTGCAGTGAAGAGACTAGAGAAGCTGGTGGAAGAAGGAGAAAGAGAGTTTCAAGCAGAAGTGAGAGCCATTGGGAAAACCCACCACAGGAACCTAGTTAGATTGATTGGTTTTTGTTCTGAGGGTTCTAAAAGGCTTCTGGTTTATGAATACATGAGCAATGGTTCACTTGGAAAGCTTCTGTTTGGTGATCAAAGACGACCGGATTGGGATGAGAGAGTAAGAATAGCACTGGACATTGCTAGAGGGATCTTGTATCTCCATGAAGAGTGTGAGGCTCCCATCATTCATTGCGACATAAAGCCTCAAAACATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTTGGTCTTGCAAAACTTCTAATGCCAGACCAAACCAGAACTTTCACAGTGATTAGAGGGACACGAGGCTACATGGCTCCGGAATGGAACAAGAACACCCCGATATCATTGAAGGCGGATGTCTATAGCTATGGAATAATGCTTTTGGAAATTTTATGTTGCAGAAGAAACCTGCATGTTAATGTCTTAGAACCTGAGGAGATTCTTCTCTCTGGTTGGGCCTATAAGTGCTTTGTTGCAGGAGAGGTAAATAAGCTTGTTCCTTCGGAAGCCATTGATAAAAATGTCATGGAAAATATGGTTAAGGTTGCACTTTGGTGTATACAAGATGAACCTTCTCTCCGACCAACAATGAAGGGTGTGGTGTTGATGTTAGAAGGGATTACTGACATAGCAATTCCTCCTTGTCCAAATTCTAACTCTGCATGA

Protein sequence

>MS.gene61510.t1

MSLSLASTGAQTKTPLSERITPGSSLSPGSSHSSSWLSHSGLFAFGFYPQENGFAIGIWLVGKKNRTIVWSANRDDPPVTSTVKLQFTMNGTLILTNQEGQEKLIVNANARASSASMLDSGNFVLYDDNNSSIVWQSFDHPTDTLLGSQSLPCGGQLSSSLSETNHSTGRFQLNMQGDGNLVLYAAYTANTPWDAYWASSTVSGNVKYHLYINKTGLLQIRNSSSDSKVITTLFDNEEDQNTGEPTIYRATLDFDGVFRLYAHHTNNGSSRSLKNFPDSTTCDVRGFCGYNSYCTFYDNKPVCICLMGYKYIDENEDTLGCERNYSKAECRGDGDGVAFYNMVSMDSIVWNDRPYYVYETMSSKEECSFACLVDCNCWASLYEKTSCKKQGLPLRYAKRTNEADISTTAFLKVGNNSIQKPSDFPLPIKSTSNKAVVHIIVVTSVFSIVLCSAIFVSSHYMYKIRVLKYKRLTDTWNFGGLNEEVSLIRFTYNELRRATNHFKEELGKGSFGAVYKGALNKGKRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLIGFCSEGSKRLLVYEYMSNGSLGKLLFGDQRRPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTVIRGTRGYMAPEWNKNTPISLKADVYSYGIMLLEILCCRRNLHVNVLEPEEILLSGWAYKCFVAGEVNKLVPSEAIDKNVMENMVKVALWCIQDEPSLRPTMKGVVLMLEGITDIAIPPCPNSNSA