Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61562.t1 | XP_003626678.1 | 63.6 | 286 | 51 | 4 | 5 | 246 | 3 | 279 | 1.70E-85 | 325.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61562.t1 | K4BIZ9 | 39.4 | 170 | 88 | 5 | 8 | 170 | 14 | 175 | 6.3e-17 | 89.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61562.t1 | G7LAR2 | 63.6 | 286 | 51 | 4 | 5 | 246 | 3 | 279 | 1.2e-85 | 325.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene61562.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61562.t1 | MTR_8g005750 | 70.979 | 286 | 30 | 5 | 5 | 246 | 3 | 279 | 2.56e-135 | 382 |
MS.gene61562.t1 | MTR_8g032510 | 43.158 | 285 | 109 | 10 | 6 | 244 | 7 | 284 | 9.76e-57 | 182 |
MS.gene61562.t1 | MTR_0002s1250 | 47.345 | 226 | 95 | 8 | 1 | 212 | 1 | 216 | 6.42e-56 | 180 |
MS.gene61562.t1 | MTR_7g073380 | 49.412 | 170 | 83 | 2 | 4 | 170 | 12 | 181 | 6.66e-49 | 162 |
MS.gene61562.t1 | MTR_7g073430 | 45.596 | 193 | 91 | 4 | 4 | 193 | 11 | 192 | 7.80e-48 | 159 |
MS.gene61562.t1 | MTR_2g075690 | 41.489 | 188 | 85 | 5 | 9 | 175 | 18 | 201 | 2.98e-40 | 140 |
MS.gene61562.t1 | MTR_2g075680 | 42.487 | 193 | 81 | 5 | 10 | 175 | 19 | 208 | 1.21e-34 | 126 |
MS.gene61562.t1 | MTR_5g067700 | 33.898 | 236 | 133 | 7 | 8 | 236 | 15 | 234 | 4.65e-34 | 122 |
MS.gene61562.t1 | MTR_2g075700 | 40.500 | 200 | 88 | 6 | 2 | 175 | 10 | 204 | 1.20e-33 | 124 |
MS.gene61562.t1 | MTR_3g093830 | 45.349 | 172 | 78 | 7 | 13 | 175 | 23 | 187 | 2.16e-32 | 120 |
MS.gene61562.t1 | MTR_7g117200 | 37.143 | 175 | 95 | 5 | 4 | 170 | 9 | 176 | 1.17e-25 | 102 |
MS.gene61562.t1 | MTR_2g075610 | 50.505 | 99 | 45 | 2 | 90 | 188 | 8 | 102 | 1.85e-25 | 99.4 |
MS.gene61562.t1 | MTR_2g075750 | 53.659 | 82 | 38 | 0 | 97 | 178 | 13 | 94 | 2.22e-25 | 99.0 |
MS.gene61562.t1 | MTR_3g090860 | 31.122 | 196 | 104 | 4 | 1 | 170 | 1 | 191 | 2.17e-20 | 88.6 |
MS.gene61562.t1 | MTR_8g099350 | 30.808 | 198 | 107 | 5 | 8 | 184 | 13 | 201 | 3.27e-20 | 88.6 |
MS.gene61562.t1 | MTR_8g027860 | 44.211 | 95 | 46 | 1 | 93 | 180 | 110 | 204 | 1.56e-18 | 83.6 |
MS.gene61562.t1 | MTR_5g067680 | 43.564 | 101 | 50 | 3 | 107 | 207 | 197 | 290 | 2.53e-17 | 80.5 |
MS.gene61562.t1 | MTR_7g028415 | 54.237 | 59 | 24 | 1 | 112 | 170 | 93 | 148 | 1.36e-14 | 69.7 |
MS.gene61562.t1 | MTR_7g028710 | 54.237 | 59 | 24 | 1 | 112 | 170 | 93 | 148 | 1.36e-14 | 69.7 |
MS.gene61562.t1 | MTR_7g079010 | 55.172 | 58 | 23 | 1 | 112 | 169 | 141 | 195 | 2.65e-14 | 70.1 |
MS.gene61562.t1 | MTR_8g092140 | 47.458 | 59 | 28 | 1 | 112 | 170 | 160 | 215 | 2.02e-13 | 67.8 |
MS.gene61562.t1 | MTR_7g062220 | 56.897 | 58 | 22 | 1 | 112 | 169 | 124 | 178 | 2.76e-13 | 68.6 |
MS.gene61562.t1 | MTR_8g007270 | 43.421 | 76 | 40 | 1 | 112 | 187 | 154 | 226 | 4.24e-13 | 67.0 |
MS.gene61562.t1 | MTR_3g095080 | 47.458 | 59 | 28 | 1 | 112 | 170 | 168 | 223 | 5.27e-13 | 67.0 |
MS.gene61562.t1 | MTR_5g073620 | 36.792 | 106 | 57 | 4 | 110 | 213 | 670 | 767 | 6.94e-13 | 68.2 |
MS.gene61562.t1 | MTR_3g095080 | 47.458 | 59 | 28 | 1 | 112 | 170 | 144 | 199 | 7.35e-13 | 66.2 |
MS.gene61562.t1 | MTR_5g043880 | 47.692 | 65 | 28 | 2 | 112 | 173 | 124 | 185 | 9.98e-13 | 66.6 |
MS.gene61562.t1 | MTR_4g094588 | 51.724 | 58 | 25 | 1 | 112 | 169 | 178 | 232 | 2.89e-12 | 65.9 |
MS.gene61562.t1 | MTR_8g028565 | 43.590 | 78 | 40 | 2 | 95 | 170 | 136 | 211 | 2.92e-12 | 65.9 |
MS.gene61562.t1 | MTR_5g091390 | 50.000 | 58 | 26 | 1 | 112 | 169 | 157 | 211 | 2.97e-12 | 65.5 |
MS.gene61562.t1 | MTR_8g096730 | 34.314 | 102 | 61 | 3 | 84 | 185 | 44 | 139 | 3.59e-12 | 62.8 |
MS.gene61562.t1 | MTR_1g086790 | 36.000 | 100 | 50 | 4 | 112 | 205 | 158 | 249 | 6.18e-12 | 64.7 |
MS.gene61562.t1 | MTR_2g033820 | 42.857 | 70 | 37 | 1 | 112 | 181 | 203 | 269 | 1.47e-11 | 63.9 |
MS.gene61562.t1 | MTR_7g109800 | 33.333 | 111 | 52 | 3 | 112 | 219 | 145 | 236 | 3.77e-11 | 62.4 |
MS.gene61562.t1 | MTR_4g122530 | 44.828 | 58 | 29 | 1 | 112 | 169 | 208 | 262 | 5.38e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61562.t1 | AT3G56400 | 35.965 | 228 | 114 | 9 | 6 | 217 | 10 | 221 | 1.04e-31 | 118 |
MS.gene61562.t1 | AT5G22570 | 32.353 | 204 | 117 | 6 | 5 | 202 | 8 | 196 | 2.69e-23 | 95.9 |
MS.gene61562.t1 | AT1G66600 | 34.524 | 168 | 97 | 3 | 6 | 172 | 8 | 163 | 1.80e-22 | 92.8 |
MS.gene61562.t1 | AT2G46400 | 35.185 | 162 | 100 | 3 | 9 | 170 | 6 | 162 | 2.29e-22 | 93.6 |
MS.gene61562.t1 | AT1G66550 | 32.020 | 203 | 105 | 7 | 6 | 192 | 8 | 193 | 4.85e-22 | 91.7 |
MS.gene61562.t1 | AT1G66560 | 37.363 | 182 | 92 | 7 | 7 | 184 | 9 | 172 | 6.56e-22 | 91.3 |
MS.gene61562.t1 | AT4G11070 | 26.471 | 272 | 150 | 6 | 3 | 239 | 7 | 263 | 9.51e-22 | 92.0 |
MS.gene61562.t1 | AT1G66550 | 31.553 | 206 | 97 | 6 | 6 | 192 | 8 | 188 | 2.85e-21 | 89.7 |
MS.gene61562.t1 | AT2G40750 | 29.289 | 239 | 127 | 6 | 6 | 205 | 14 | 249 | 3.69e-21 | 90.9 |
MS.gene61562.t1 | AT5G01900 | 35.057 | 174 | 100 | 5 | 4 | 172 | 5 | 170 | 3.02e-20 | 87.0 |
MS.gene61562.t1 | AT2G40740 | 36.364 | 165 | 78 | 6 | 89 | 240 | 137 | 287 | 1.29e-19 | 85.9 |
MS.gene61562.t1 | AT2G40740 | 36.364 | 165 | 78 | 6 | 89 | 240 | 146 | 296 | 1.46e-19 | 85.9 |
MS.gene61562.t1 | AT4G11070 | 26.693 | 251 | 144 | 5 | 3 | 239 | 7 | 231 | 4.23e-19 | 84.3 |
MS.gene61562.t1 | AT1G80590 | 28.311 | 219 | 124 | 6 | 6 | 221 | 8 | 196 | 5.65e-19 | 83.2 |
MS.gene61562.t1 | AT4G23810 | 38.525 | 122 | 62 | 3 | 108 | 220 | 154 | 271 | 4.82e-18 | 82.0 |
MS.gene61562.t1 | AT5G24110 | 32.164 | 171 | 99 | 4 | 4 | 170 | 14 | 171 | 6.60e-18 | 81.6 |
MS.gene61562.t1 | AT5G45260 | 51.515 | 66 | 30 | 1 | 106 | 169 | 1200 | 1265 | 7.48e-14 | 71.2 |
MS.gene61562.t1 | AT2G46130 | 51.724 | 58 | 25 | 1 | 112 | 169 | 30 | 84 | 1.46e-13 | 65.5 |
MS.gene61562.t1 | AT5G49520 | 42.529 | 87 | 44 | 3 | 112 | 198 | 221 | 301 | 3.66e-13 | 68.6 |
MS.gene61562.t1 | AT1G69310 | 50.000 | 58 | 26 | 1 | 112 | 169 | 147 | 201 | 4.65e-13 | 67.8 |
MS.gene61562.t1 | AT1G69310 | 50.000 | 58 | 26 | 1 | 112 | 169 | 147 | 201 | 4.65e-13 | 67.8 |
MS.gene61562.t1 | AT1G69310 | 50.000 | 58 | 26 | 1 | 112 | 169 | 147 | 201 | 4.65e-13 | 67.8 |
MS.gene61562.t1 | AT1G64000 | 50.000 | 58 | 26 | 1 | 112 | 169 | 114 | 168 | 4.84e-13 | 66.2 |
MS.gene61562.t1 | AT4G39410 | 39.175 | 97 | 40 | 3 | 112 | 207 | 223 | 301 | 6.45e-13 | 67.4 |
MS.gene61562.t1 | AT2G44745 | 50.000 | 58 | 26 | 1 | 112 | 169 | 145 | 199 | 2.31e-12 | 64.7 |
MS.gene61562.t1 | AT1G29860 | 50.000 | 58 | 26 | 1 | 112 | 169 | 136 | 190 | 2.89e-12 | 65.5 |
MS.gene61562.t1 | AT4G18170 | 50.000 | 58 | 26 | 1 | 112 | 169 | 172 | 226 | 3.94e-12 | 65.1 |
MS.gene61562.t1 | AT5G13080 | 49.153 | 59 | 27 | 1 | 112 | 170 | 67 | 122 | 5.92e-12 | 62.0 |
MS.gene61562.t1 | AT5G41570 | 48.276 | 58 | 27 | 1 | 112 | 169 | 98 | 152 | 6.10e-12 | 62.8 |
MS.gene61562.t1 | AT4G01250 | 31.061 | 132 | 88 | 2 | 38 | 169 | 55 | 183 | 1.10e-11 | 63.9 |
MS.gene61562.t1 | AT5G46350 | 48.276 | 58 | 27 | 1 | 112 | 169 | 183 | 237 | 1.80e-11 | 63.5 |
MS.gene61562.t1 | AT2G47260 | 47.458 | 59 | 28 | 1 | 112 | 170 | 174 | 229 | 6.15e-11 | 62.0 |
MS.gene61562.t1 | AT3G01970 | 47.458 | 59 | 28 | 1 | 112 | 170 | 65 | 120 | 7.88e-11 | 58.9 |
MS.gene61562.t1 | AT2G37260 | 46.552 | 58 | 28 | 1 | 112 | 169 | 349 | 403 | 9.27e-11 | 61.6 |
MS.gene61562.t1 | AT5G43290 | 51.724 | 58 | 25 | 1 | 112 | 169 | 114 | 168 | 9.84e-11 | 60.8 |
Find 49 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATACACACCTTGAGTATT+TGG | 0.203884 | 8.2:+83975994 | None:intergenic |
GAAATAGAGTTATCTAAAAT+TGG | 0.244498 | 8.2:+83975538 | None:intergenic |
ACAAGATGTTGTGCAAATAA+TGG | 0.269160 | 8.2:+83976562 | None:intergenic |
TTCAATTCTCTGCACTTGTT+TGG | 0.311204 | 8.2:+83975836 | None:intergenic |
CAAGATGTTGTGCAAATAAT+GGG | 0.321057 | 8.2:+83976563 | None:intergenic |
CAAGGAGAACTCACCTTCCT+TGG | 0.368416 | 8.2:-83975584 | MS.gene61562:CDS |
TTTGATGATGTTTGTTCAAA+AGG | 0.368943 | 8.2:+83976503 | None:intergenic |
ACAAGTGTGGTGGCCGTAAT+AGG | 0.383562 | 8.2:+83975788 | None:intergenic |
ACCTTGAGTATTTGGAATTG+AGG | 0.393271 | 8.2:+83976002 | None:intergenic |
GAGTTATCTAAAATTGGTTC+AGG | 0.405651 | 8.2:+83975544 | None:intergenic |
TATAATTGAAAGCCATGAAA+AGG | 0.418677 | 8.2:+83975388 | None:intergenic |
CAACAGATGATGGGCATGAA+TGG | 0.421200 | 8.2:-83976048 | MS.gene61562:CDS |
TTGTATAAGACCACCTATTA+CGG | 0.432341 | 8.2:-83975801 | MS.gene61562:CDS |
GGGCATGAATGGAGAAAGTA+TGG | 0.453906 | 8.2:-83976037 | MS.gene61562:CDS |
TCAGAAAGACCAACAGATGA+TGG | 0.460980 | 8.2:-83976058 | MS.gene61562:CDS |
CACTTGAATCTGATGATCAC+AGG | 0.481025 | 8.2:-83975477 | MS.gene61562:CDS |
TTTGAACAAACATCATCAAA+GGG | 0.495098 | 8.2:-83976500 | MS.gene61562:CDS |
TTTAACTATTAAATCTGAAG+AGG | 0.496351 | 8.2:-83976464 | MS.gene61562:CDS |
CATTCATGCCCATCATCTGT+TGG | 0.504398 | 8.2:+83976049 | None:intergenic |
TGATAGAGATGAGGCAATGA+AGG | 0.505201 | 8.2:-83976665 | MS.gene61562:CDS |
GATATGATGATAATATTGTA+TGG | 0.516217 | 8.2:-83975454 | MS.gene61562:CDS |
ATAATTGAAAGCCATGAAAA+GGG | 0.537651 | 8.2:+83975389 | None:intergenic |
CTAGAGGATCTCACAAAAGA+AGG | 0.538260 | 8.2:-83976402 | MS.gene61562:intron |
GATGTTTGTTCAAAAGGAAG+AGG | 0.548943 | 8.2:+83976509 | None:intergenic |
GTGAGATCCTCTAGCACCAC+GGG | 0.549156 | 8.2:+83976411 | None:intergenic |
ATATATGCAGGGACTACTAC+AGG | 0.552760 | 8.2:-83975893 | MS.gene61562:intron |
TAGATAACTCTATTTCTACA+AGG | 0.554534 | 8.2:-83975531 | MS.gene61562:CDS |
TAATAGGTGGTCTTATACAA+GGG | 0.559513 | 8.2:+83975804 | None:intergenic |
TCCTCAATTCCAAATACTCA+AGG | 0.566315 | 8.2:-83976003 | MS.gene61562:intron |
CAGAAAGACCAACAGATGAT+GGG | 0.573763 | 8.2:-83976057 | MS.gene61562:CDS |
ATGTTTGTTCAAAAGGAAGA+GGG | 0.576811 | 8.2:+83976510 | None:intergenic |
GTAATAGGTGGTCTTATACA+AGG | 0.578341 | 8.2:+83975803 | None:intergenic |
AGTTCCACCCGTGGTGCTAG+AGG | 0.580528 | 8.2:-83976418 | MS.gene61562:CDS |
AGAGAGCAGGTATTCATCCA+AGG | 0.581141 | 8.2:+83975567 | None:intergenic |
GAAAGCCATGAAAAGGGTGA+AGG | 0.584427 | 8.2:+83975395 | None:intergenic |
AGCAGGTATTCATCCAAGGA+AGG | 0.605278 | 8.2:+83975571 | None:intergenic |
ACATTCAGTGGAATATTGCA+AGG | 0.616091 | 8.2:-83975602 | MS.gene61562:intron |
TGTCTAATTTGTTACAAGTG+TGG | 0.626364 | 8.2:+83975775 | None:intergenic |
AAATTGGTTCAGGAGAGAGC+AGG | 0.628355 | 8.2:+83975554 | None:intergenic |
GCAATGAAGGAGCTTGTGAG+AGG | 0.633274 | 8.2:-83976652 | MS.gene61562:CDS |
CAATGAAGGAGCTTGTGAGA+GGG | 0.635141 | 8.2:-83976651 | MS.gene61562:CDS |
CTAATTTGTTACAAGTGTGG+TGG | 0.636211 | 8.2:+83975778 | None:intergenic |
TGTGAGATCCTCTAGCACCA+CGG | 0.642464 | 8.2:+83976410 | None:intergenic |
AGATCCTCTAGCACCACGGG+TGG | 0.645633 | 8.2:+83976414 | None:intergenic |
AGTGTGGTGGCCGTAATAGG+TGG | 0.645916 | 8.2:+83975791 | None:intergenic |
AAATATGGATGATAGAGATG+AGG | 0.650081 | 8.2:-83976674 | None:intergenic |
ACTTGAATCTGATGATCACA+GGG | 0.651483 | 8.2:-83975476 | MS.gene61562:CDS |
TAGGTGGTCTTATACAAGGG+AGG | 0.682870 | 8.2:+83975807 | None:intergenic |
TACAAGACTAGTTCCACCCG+TGG | 0.693459 | 8.2:-83976427 | MS.gene61562:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATTATTAATATATATA+TGG | - | chr8.2:83975727-83975746 | MS.gene61562:intron | 0.0% |
!! | TATATATATTAATAATATAT+TGG | + | chr8.2:83975727-83975746 | None:intergenic | 0.0% |
!! | TATATATTAATTCAATTCAT+TGG | + | chr8.2:83976149-83976168 | None:intergenic | 10.0% |
!! | AATTGAATTAATATATATGC+AGG | - | chr8.2:83976152-83976171 | MS.gene61562:intron | 15.0% |
!! | ATTGAATTAATATATATGCA+GGG | - | chr8.2:83976153-83976172 | MS.gene61562:intron | 15.0% |
!! | TATATATAGATGAATTAAGT+TGG | + | chr8.2:83976113-83976132 | None:intergenic | 15.0% |
!! | GATATGATGATAATATTGTA+TGG | - | chr8.2:83976603-83976622 | MS.gene61562:CDS | 20.0% |
!! | TTTAACTATTAAATCTGAAG+AGG | - | chr8.2:83975593-83975612 | MS.gene61562:CDS | 20.0% |
!!! | GAAATAGAGTTATCTAAAAT+TGG | + | chr8.2:83976522-83976541 | None:intergenic | 20.0% |
! | ATAATTGAAAGCCATGAAAA+GGG | + | chr8.2:83976671-83976690 | None:intergenic | 25.0% |
! | TATAATTGAAAGCCATGAAA+AGG | + | chr8.2:83976672-83976691 | None:intergenic | 25.0% |
! | TTTGAACAAACATCATCAAA+GGG | - | chr8.2:83975557-83975576 | MS.gene61562:CDS | 25.0% |
!! | GAACATTTTCTATAGAATCA+TGG | - | chr8.2:83975881-83975900 | MS.gene61562:CDS | 25.0% |
!! | TAGAATCATGGTTAAGTTTT+TGG | - | chr8.2:83975893-83975912 | MS.gene61562:intron | 25.0% |
!! | TTTTGAACAAACATCATCAA+AGG | - | chr8.2:83975556-83975575 | MS.gene61562:CDS | 25.0% |
!!! | GTTTTTAAAGAGTGTTAACA+AGG | + | chr8.2:83975833-83975852 | None:intergenic | 25.0% |
!!! | TAGATAACTCTATTTCTACA+AGG | - | chr8.2:83976526-83976545 | MS.gene61562:CDS | 25.0% |
!!! | TTTGATGATGTTTGTTCAAA+AGG | + | chr8.2:83975557-83975576 | None:intergenic | 25.0% |
AACATGAAATTCTCATTGTG+TGG | - | chr8.2:83975799-83975818 | MS.gene61562:CDS | 30.0% | |
ACAAGATGTTGTGCAAATAA+TGG | + | chr8.2:83975498-83975517 | None:intergenic | 30.0% | |
ATATACACACCTTGAGTATT+TGG | + | chr8.2:83976066-83976085 | None:intergenic | 30.0% | |
ATGTTTGTTCAAAAGGAAGA+GGG | + | chr8.2:83975550-83975569 | None:intergenic | 30.0% | |
CAAGATGTTGTGCAAATAAT+GGG | + | chr8.2:83975497-83975516 | None:intergenic | 30.0% | |
GTTGTTAAAGCTAAGCAATA+TGG | + | chr8.2:83976349-83976368 | None:intergenic | 30.0% | |
TAAAAAGGGACAATCTTGTT+CGG | + | chr8.2:83976388-83976407 | None:intergenic | 30.0% | |
TTGTATAAGACCACCTATTA+CGG | - | chr8.2:83976256-83976275 | MS.gene61562:intron | 30.0% | |
! | GAGTTATCTAAAATTGGTTC+AGG | + | chr8.2:83976516-83976535 | None:intergenic | 30.0% |
!! | TAATAGGTGGTCTTATACAA+GGG | + | chr8.2:83976256-83976275 | None:intergenic | 30.0% |
!! | TGTCTAATTTGTTACAAGTG+TGG | + | chr8.2:83976285-83976304 | None:intergenic | 30.0% |
!! | TTTTAATTCCTCACATTCAG+TGG | - | chr8.2:83976443-83976462 | MS.gene61562:CDS | 30.0% |
AAAAACTACAGAAACGTGTG+AGG | - | chr8.2:83975971-83975990 | MS.gene61562:intron | 35.0% | |
ACATTCAGTGGAATATTGCA+AGG | - | chr8.2:83976455-83976474 | MS.gene61562:CDS | 35.0% | |
ACTTGAATCTGATGATCACA+GGG | - | chr8.2:83976581-83976600 | MS.gene61562:CDS | 35.0% | |
AGTATTATCATGAGGAGAAG+TGG | + | chr8.2:83976319-83976338 | None:intergenic | 35.0% | |
GAGGAAGTAGTATTATCATG+AGG | + | chr8.2:83976327-83976346 | None:intergenic | 35.0% | |
GATGTCGACGATGATAAAAA+GGG | + | chr8.2:83976402-83976421 | None:intergenic | 35.0% | |
GATGTTTGTTCAAAAGGAAG+AGG | + | chr8.2:83975551-83975570 | None:intergenic | 35.0% | |
GTATTATCATGAGGAGAAGT+GGG | + | chr8.2:83976318-83976337 | None:intergenic | 35.0% | |
GTTAAAGCTAAGCAATATGG+AGG | + | chr8.2:83976346-83976365 | None:intergenic | 35.0% | |
TCCTCAATTCCAAATACTCA+AGG | - | chr8.2:83976054-83976073 | MS.gene61562:CDS | 35.0% | |
TGATGTCGACGATGATAAAA+AGG | + | chr8.2:83976403-83976422 | None:intergenic | 35.0% | |
TTCAATTCTCTGCACTTGTT+TGG | + | chr8.2:83976224-83976243 | None:intergenic | 35.0% | |
! | ACCTTGAGTATTTGGAATTG+AGG | + | chr8.2:83976058-83976077 | None:intergenic | 35.0% |
!! | CTAATTTGTTACAAGTGTGG+TGG | + | chr8.2:83976282-83976301 | None:intergenic | 35.0% |
!! | GTAATAGGTGGTCTTATACA+AGG | + | chr8.2:83976257-83976276 | None:intergenic | 35.0% |
!! | TCATGGTTAAGTTTTTGGAG+TGG | - | chr8.2:83975898-83975917 | MS.gene61562:intron | 35.0% |
AATCTTGTTCGGTTGGAGTT+GGG | + | chr8.2:83976377-83976396 | None:intergenic | 40.0% | |
ATATATGCAGGGACTACTAC+AGG | - | chr8.2:83976164-83976183 | MS.gene61562:intron | 40.0% | |
CACTTGAATCTGATGATCAC+AGG | - | chr8.2:83976580-83976599 | MS.gene61562:CDS | 40.0% | |
CAGAAAGACCAACAGATGAT+GGG | - | chr8.2:83976000-83976019 | MS.gene61562:intron | 40.0% | |
CTAGAGGATCTCACAAAAGA+AGG | - | chr8.2:83975655-83975674 | MS.gene61562:intron | 40.0% | |
GCAATATTCCACTGAATGTG+AGG | + | chr8.2:83976454-83976473 | None:intergenic | 40.0% | |
TCAGAAAGACCAACAGATGA+TGG | - | chr8.2:83975999-83976018 | MS.gene61562:intron | 40.0% | |
TGATAGAGATGAGGCAATGA+AGG | - | chr8.2:83975392-83975411 | MS.gene61562:CDS | 40.0% | |
! | AGTCATGTTGTTTGCTAGCT+AGG | - | chr8.2:83975853-83975872 | MS.gene61562:CDS | 40.0% |
! | GATTTCCTTCACCCTTTTCA+TGG | - | chr8.2:83976657-83976676 | MS.gene61562:CDS | 40.0% |
AAGGGACAATCTTGTTCGGT+TGG | + | chr8.2:83976384-83976403 | None:intergenic | 45.0% | |
AGAGAGCAGGTATTCATCCA+AGG | + | chr8.2:83976493-83976512 | None:intergenic | 45.0% | |
AGCAGGTATTCATCCAAGGA+AGG | + | chr8.2:83976489-83976508 | None:intergenic | 45.0% | |
CAATCTTGTTCGGTTGGAGT+TGG | + | chr8.2:83976378-83976397 | None:intergenic | 45.0% | |
CAATGAAGGAGCTTGTGAGA+GGG | - | chr8.2:83975406-83975425 | MS.gene61562:CDS | 45.0% | |
CATTCATGCCCATCATCTGT+TGG | + | chr8.2:83976011-83976030 | None:intergenic | 45.0% | |
GAAAGCCATGAAAAGGGTGA+AGG | + | chr8.2:83976665-83976684 | None:intergenic | 45.0% | |
GGGCATGAATGGAGAAAGTA+TGG | - | chr8.2:83976020-83976039 | MS.gene61562:CDS | 45.0% | |
! | AAATTGGTTCAGGAGAGAGC+AGG | + | chr8.2:83976506-83976525 | None:intergenic | 45.0% |
!! | CAACAGATGATGGGCATGAA+TGG | - | chr8.2:83976009-83976028 | MS.gene61562:CDS | 45.0% |
!! | TAGGTGGTCTTATACAAGGG+AGG | + | chr8.2:83976253-83976272 | None:intergenic | 45.0% |
ACAAGTGTGGTGGCCGTAAT+AGG | + | chr8.2:83976272-83976291 | None:intergenic | 50.0% | |
CAAGGAGAACTCACCTTCCT+TGG | - | chr8.2:83976473-83976492 | MS.gene61562:CDS | 50.0% | |
GCAATGAAGGAGCTTGTGAG+AGG | - | chr8.2:83975405-83975424 | MS.gene61562:CDS | 50.0% | |
TGTGAGATCCTCTAGCACCA+CGG | + | chr8.2:83975650-83975669 | None:intergenic | 50.0% | |
TTGTTCGGTTGGAGTTGGGA+AGG | + | chr8.2:83976373-83976392 | None:intergenic | 50.0% | |
! | TACAAGACTAGTTCCACCCG+TGG | - | chr8.2:83975630-83975649 | MS.gene61562:intron | 50.0% |
AGTGTGGTGGCCGTAATAGG+TGG | + | chr8.2:83976269-83976288 | None:intergenic | 55.0% | |
GTGAGATCCTCTAGCACCAC+GGG | + | chr8.2:83975649-83975668 | None:intergenic | 55.0% | |
AGATCCTCTAGCACCACGGG+TGG | + | chr8.2:83975646-83975665 | None:intergenic | 60.0% | |
! | AGTTCCACCCGTGGTGCTAG+AGG | - | chr8.2:83975639-83975658 | MS.gene61562:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 83975387 | 83976692 | 83975387 | ID=MS.gene61562 |
chr8.2 | mRNA | 83975387 | 83976692 | 83975387 | ID=MS.gene61562.t1;Parent=MS.gene61562 |
chr8.2 | exon | 83976403 | 83976692 | 83976403 | ID=MS.gene61562.t1.exon1;Parent=MS.gene61562.t1 |
chr8.2 | CDS | 83976403 | 83976692 | 83976403 | ID=cds.MS.gene61562.t1;Parent=MS.gene61562.t1 |
chr8.2 | exon | 83976004 | 83976108 | 83976004 | ID=MS.gene61562.t1.exon2;Parent=MS.gene61562.t1 |
chr8.2 | CDS | 83976004 | 83976108 | 83976004 | ID=cds.MS.gene61562.t1;Parent=MS.gene61562.t1 |
chr8.2 | exon | 83975790 | 83975905 | 83975790 | ID=MS.gene61562.t1.exon3;Parent=MS.gene61562.t1 |
chr8.2 | CDS | 83975790 | 83975905 | 83975790 | ID=cds.MS.gene61562.t1;Parent=MS.gene61562.t1 |
chr8.2 | exon | 83975387 | 83975616 | 83975387 | ID=MS.gene61562.t1.exon4;Parent=MS.gene61562.t1 |
chr8.2 | CDS | 83975387 | 83975616 | 83975387 | ID=cds.MS.gene61562.t1;Parent=MS.gene61562.t1 |
Gene Sequence |
Protein sequence |