AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61563

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61563.t1 MTR_8g005750 63.545 299 81 10 1 293 1 277 1.71e-110 321
MS.gene61563.t1 MTR_0002s1250 53.414 249 97 8 3 243 6 243 9.73e-70 217
MS.gene61563.t1 MTR_8g032510 47.213 305 115 13 7 294 10 285 1.03e-63 202
MS.gene61563.t1 MTR_7g073380 48.971 243 99 9 7 231 17 252 2.32e-62 199
MS.gene61563.t1 MTR_7g073430 43.463 283 129 9 7 279 16 277 9.66e-62 197
MS.gene61563.t1 MTR_2g075690 41.935 217 100 5 3 194 14 229 2.06e-45 155
MS.gene61563.t1 MTR_2g075700 35.317 252 123 5 3 219 13 259 1.02e-35 130
MS.gene61563.t1 MTR_2g075610 43.182 176 74 7 79 250 3 156 1.33e-34 124
MS.gene61563.t1 MTR_2g075680 38.494 239 110 9 3 207 14 249 1.95e-34 127
MS.gene61563.t1 MTR_2g075750 51.200 125 50 3 91 211 13 130 5.10e-34 122
MS.gene61563.t1 MTR_5g067700 40.571 175 85 8 7 173 16 179 5.82e-30 113
MS.gene61563.t1 MTR_7g117200 39.080 174 85 4 8 168 15 180 4.79e-29 113
MS.gene61563.t1 MTR_3g093830 36.036 222 119 6 11 214 23 239 1.69e-27 108
MS.gene61563.t1 MTR_3g090860 31.472 197 98 5 7 172 9 199 5.52e-22 94.4
MS.gene61563.t1 MTR_8g099350 32.461 191 96 6 8 172 15 198 1.18e-19 88.2
MS.gene61563.t1 MTR_8g027860 31.217 189 105 5 8 172 15 202 1.40e-18 85.1
MS.gene61563.t1 MTR_5g067680 51.471 68 33 0 101 168 197 264 2.60e-17 81.3
MS.gene61563.t1 MTR_7g028415 54.237 59 24 1 106 164 93 148 1.12e-13 68.2
MS.gene61563.t1 MTR_7g028710 54.237 59 24 1 106 164 93 148 1.12e-13 68.2
MS.gene61563.t1 MTR_7g079010 49.315 73 32 2 106 178 141 208 2.68e-13 68.2
MS.gene61563.t1 MTR_3g095080 45.455 66 33 1 106 171 168 230 8.01e-13 67.0
MS.gene61563.t1 MTR_8g092140 43.939 66 34 1 106 171 160 222 1.15e-12 66.6
MS.gene61563.t1 MTR_3g095080 45.455 66 33 1 106 171 144 206 1.23e-12 66.2
MS.gene61563.t1 MTR_7g062220 55.172 58 23 1 106 163 124 178 1.82e-12 67.0
MS.gene61563.t1 MTR_4g094588 51.724 58 25 1 106 163 178 232 3.72e-12 66.2
MS.gene61563.t1 MTR_5g073620 37.500 96 53 3 104 196 670 761 2.26e-11 64.7
MS.gene61563.t1 MTR_8g007270 46.269 67 30 2 106 169 154 217 2.86e-11 62.4
MS.gene61563.t1 MTR_5g091390 50.000 58 26 1 106 163 157 211 6.50e-11 62.4
MS.gene61563.t1 MTR_5g043880 48.276 58 27 1 106 163 124 178 8.07e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61563.t1 AT1G66550 31.915 235 127 8 7 232 11 221 4.26e-25 101
MS.gene61563.t1 AT1G66550 31.950 241 124 9 7 232 11 226 1.23e-24 100
MS.gene61563.t1 AT3G56400 34.197 193 93 5 8 179 14 193 3.94e-24 99.4
MS.gene61563.t1 AT1G66560 33.838 198 106 6 1 193 5 182 1.41e-23 97.1
MS.gene61563.t1 AT5G22570 36.478 159 89 4 42 191 43 198 1.82e-23 97.4
MS.gene61563.t1 AT1G66600 31.658 199 116 4 42 235 40 223 2.05e-23 96.3
MS.gene61563.t1 AT5G01900 35.503 169 90 5 7 165 10 169 1.16e-21 92.0
MS.gene61563.t1 AT1G80590 37.580 157 73 4 9 165 13 144 2.11e-21 90.9
MS.gene61563.t1 AT2G46400 33.824 204 100 8 5 194 3 185 1.05e-20 90.1
MS.gene61563.t1 AT2G40750 30.603 232 119 7 7 201 17 243 4.18e-20 89.4
MS.gene61563.t1 AT4G11070 34.320 169 92 3 8 168 14 171 2.02e-19 86.3
MS.gene61563.t1 AT5G24110 31.492 181 99 6 1 171 13 178 5.79e-19 85.5
MS.gene61563.t1 AT4G11070 34.615 156 73 3 42 168 48 203 6.11e-19 85.5
MS.gene61563.t1 AT2G40740 44.186 86 48 0 101 186 168 253 1.54e-18 84.0
MS.gene61563.t1 AT2G40740 44.186 86 48 0 101 186 177 262 1.89e-18 84.0
MS.gene61563.t1 AT4G23810 47.727 88 38 2 89 168 133 220 2.33e-18 84.0
MS.gene61563.t1 AT1G64000 46.575 73 34 2 106 178 114 181 7.14e-13 66.6
MS.gene61563.t1 AT5G46350 43.373 83 41 2 106 185 183 262 7.71e-13 68.2
MS.gene61563.t1 AT2G46130 44.737 76 37 2 106 181 30 100 9.72e-13 63.9
MS.gene61563.t1 AT5G45260 43.590 78 41 2 89 163 1188 1265 9.92e-13 68.9
MS.gene61563.t1 AT4G26440 45.312 64 31 2 88 150 159 219 8.35e-12 65.9
MS.gene61563.t1 AT4G39410 36.538 104 52 3 71 163 177 277 1.85e-11 63.9
MS.gene61563.t1 AT5G49520 50.847 59 26 1 106 164 221 276 1.88e-11 64.3
MS.gene61563.t1 AT2G44745 50.000 58 26 1 106 163 145 199 2.13e-11 62.8
MS.gene61563.t1 AT1G29860 50.000 58 26 1 106 163 136 190 3.62e-11 62.8
MS.gene61563.t1 AT1G69310 48.276 58 27 1 106 163 147 201 3.87e-11 62.8
MS.gene61563.t1 AT1G69310 48.276 58 27 1 106 163 147 201 3.87e-11 62.8
MS.gene61563.t1 AT1G69310 48.276 58 27 1 106 163 147 201 3.87e-11 62.8
MS.gene61563.t1 AT5G41570 43.836 73 36 2 106 178 98 165 4.42e-11 61.2
MS.gene61563.t1 AT4G18170 50.000 58 26 1 106 163 172 226 5.23e-11 62.8
MS.gene61563.t1 AT5G13080 49.153 59 27 1 106 164 67 122 6.70e-11 59.7

Find 65 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACACACCTTGAGTATT+TGG 0.184403 8.2:+83972274 None:intergenic
TGAATCATGTGATGATAAAA+AGG 0.256485 8.2:+83971928 None:intergenic
TCTGCACTTGTTTGGTTGCT+TGG 0.276455 8.2:+83972119 None:intergenic
TTGAATTCTCTGCACTTGTT+TGG 0.343489 8.2:+83972111 None:intergenic
GGGTATGAATGGAGAAAATA+TGG 0.368996 8.2:-83972317 MS.gene61563:CDS
CAATCTTGTTTGGTTGGAGT+TGG 0.387905 8.2:+83971953 None:intergenic
ACCTTGAGTATTTGGAATTG+AGG 0.393271 8.2:+83972282 None:intergenic
AATCTTGTTTGGTTGGAGTT+GGG 0.426902 8.2:+83971954 None:intergenic
GAGATCTCCTGAGATTTAGT+TGG 0.441487 8.2:+83972998 None:intergenic
ATCTACAAAAGCCCTAGAAA+AGG 0.443182 8.2:+83971671 None:intergenic
AAGGGACAATCTTGTTTGGT+TGG 0.445134 8.2:+83971947 None:intergenic
TCAGAATGTCCAACAGATGA+TGG 0.456231 8.2:-83972338 MS.gene61563:CDS
GTTGTTAAAGCTAAGCAATA+TGG 0.457680 8.2:+83971982 None:intergenic
TTCAGTACTGGAACATTGTA+AGG 0.467184 8.2:-83971909 MS.gene61563:CDS
ATCATCACATGATTCAGTAC+TGG 0.472504 8.2:-83971921 MS.gene61563:CDS
AGATTTAGTTGGACTAATGA+AGG 0.473744 8.2:+83973009 None:intergenic
CGTGAGTTTGCAAACCAGCT+TGG 0.479698 8.2:-83973169 MS.gene61563:CDS
TTTGAACAAACATCACAAAA+CGG 0.482778 8.2:-83973038 MS.gene61563:CDS
CATTAGTCCAACTAAATCTC+AGG 0.483913 8.2:-83973005 MS.gene61563:CDS
TTCCTTGAATATTGATTACC+TGG 0.493626 8.2:-83971864 MS.gene61563:CDS
AACCAGGTAATCAATATTCA+AGG 0.496471 8.2:+83971862 None:intergenic
GAAATATCTAAAGTGTGCTC+AGG 0.504315 8.2:+83971836 None:intergenic
TTTGTGATGTTTGTTCAAAA+GGG 0.523519 8.2:+83973042 None:intergenic
ATCAATATTCAAGGAAGGTG+AGG 0.528994 8.2:+83971871 None:intergenic
AAATATGCAGGGACTACTAC+AGG 0.535326 8.2:-83972168 MS.gene61563:intron
TCTACAAAAGCCCTAGAAAA+GGG 0.535582 8.2:+83971672 None:intergenic
CATACTTCCACCACTGGTAG+AGG 0.539107 8.2:-83972971 MS.gene61563:CDS
AATGAATGAGGCAATGGAGG+AGG 0.541065 8.2:-83973206 MS.gene61563:CDS
CATTCATACCCATCATCTGT+TGG 0.541481 8.2:+83972329 None:intergenic
TTATTACAAGTTGTCCAAGC+TGG 0.545077 8.2:+83973155 None:intergenic
CAACAGATGATGGGTATGAA+TGG 0.546718 8.2:-83972328 MS.gene61563:CDS
GTAGAGGATCTTACAAAAGA+AGG 0.546964 8.2:-83972955 MS.gene61563:intron
TAATATGTGGTCTTATATGA+AGG 0.547746 8.2:+83972079 None:intergenic
CTTAGAAATGAATGAGGCAA+TGG 0.554533 8.2:-83973212 None:intergenic
TTTGTAAGATCCTCTACCAG+TGG 0.556118 8.2:+83972961 None:intergenic
AAGGATATGATGATGATGTA+TGG 0.557692 8.2:-83971743 MS.gene61563:CDS
GTTGACAAGAACAAGATGTT+GGG 0.558462 8.2:+83973096 None:intergenic
TCCTCAATTCCAAATACTCA+AGG 0.566315 8.2:-83972283 MS.gene61563:intron
AACTACATCAACATGGGAGA+AGG 0.572317 8.2:-83972363 MS.gene61563:CDS
TCACAACATACTTCCACCAC+TGG 0.575996 8.2:-83972977 MS.gene61563:CDS
GTAAGATCCTCTACCAGTGG+TGG 0.578848 8.2:+83972964 None:intergenic
ATTGTGATCATGAGGAGAAG+TGG 0.579266 8.2:+83972012 None:intergenic
CATCTGAGTTATTGCAAGTG+TGG 0.586195 8.2:+83972050 None:intergenic
CAGAATGTCCAACAGATGAT+GGG 0.586212 8.2:-83972337 MS.gene61563:CDS
ATGGATCTTAGAAATGAATG+AGG 0.586637 8.2:-83973218 None:intergenic
CAATAATCATCATCATGAGT+TGG 0.589772 8.2:-83973119 MS.gene61563:CDS
TTGTGATCATGAGGAGAAGT+GGG 0.590420 8.2:+83972013 None:intergenic
AGAAATGAATGAGGCAATGG+AGG 0.592313 8.2:-83973209 None:intergenic
TGGAGGAGGAGCTAGTGAGA+GGG 0.597611 8.2:-83973192 MS.gene61563:CDS
GATGTTTGTTCAAAAGGGTG+AGG 0.598856 8.2:+83973047 None:intergenic
TGTTGACAAGAACAAGATGT+TGG 0.603924 8.2:+83973095 None:intergenic
ATGGAGGAGGAGCTAGTGAG+AGG 0.606187 8.2:-83973193 MS.gene61563:CDS
GAGGAAGTATTGTGATCATG+AGG 0.607427 8.2:+83972004 None:intergenic
TCAATATTCAAGGAAGGTGA+GGG 0.611078 8.2:+83971872 None:intergenic
GTTAAAGCTAAGCAATATGG+AGG 0.618068 8.2:+83971985 None:intergenic
AGGTAATCAATATTCAAGGA+AGG 0.620262 8.2:+83971866 None:intergenic
AAGTGTGCTCAGGAGAAACC+AGG 0.635271 8.2:+83971846 None:intergenic
ATTGAGTGCTACTACTGACT+TGG 0.641003 8.2:+83971801 None:intergenic
ATGTTTGTTCAAAAGGGTGA+GGG 0.642130 8.2:+83973048 None:intergenic
TGAATCTGATGATGATCACA+AGG 0.649265 8.2:-83971762 MS.gene61563:CDS
TATGTGGTCTTATATGAAGG+AGG 0.655421 8.2:+83972082 None:intergenic
AGTGTGGTGGTCGTAATATG+TGG 0.655558 8.2:+83972066 None:intergenic
CTGAGTTATTGCAAGTGTGG+TGG 0.658914 8.2:+83972053 None:intergenic
AGTACTGGAACATTGTAAGG+AGG 0.678069 8.2:-83971906 MS.gene61563:CDS
AAGGGTAAAAGAAATCACGA+TGG 0.749869 8.2:+83971690 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTATATATATAAT+TGG + chr8.2:83972316-83972335 None:intergenic 0.0%
!!! TTATATATATAATATTTTTT+AGG - chr8.2:83972317-83972336 MS.gene61563:CDS 0.0%
!!! AGTAATTTTTTGTTTATAAT+AGG - chr8.2:83972246-83972265 MS.gene61563:intron 10.0%
!!! GTAATTTTTTGTTTATAATA+GGG - chr8.2:83972247-83972266 MS.gene61563:intron 10.0%
!!! TATTTTTTTTTAGATTCATA+TGG - chr8.2:83972169-83972188 MS.gene61563:intron 10.0%
!!! TTACTTTTTTTAGATTCATA+TGG + chr8.2:83972231-83972250 None:intergenic 15.0%
!! AAGAAAAGAATTAGTAAACA+TGG + chr8.2:83971977-83971996 None:intergenic 20.0%
!! ATGAATTGAATTAAATATGC+AGG - chr8.2:83972698-83972717 MS.gene61563:intron 20.0%
!! GCATATTTAATTCAATTCAT+TGG + chr8.2:83972698-83972717 None:intergenic 20.0%
!! TGAATTGAATTAAATATGCA+GGG - chr8.2:83972699-83972718 MS.gene61563:intron 20.0%
! GAATCATGTGATGATAAAAA+GGG + chr8.2:83972952-83972971 None:intergenic 25.0%
! GTTTATGCAAAAAGAGTTAA+TGG - chr8.2:83972462-83972481 MS.gene61563:intron 25.0%
! TCAAGAGAAGATTTATTAGT+AGG + chr8.2:83972674-83972693 None:intergenic 25.0%
! TGAATCATGTGATGATAAAA+AGG + chr8.2:83972953-83972972 None:intergenic 25.0%
! TTATAATCATGTTGTTCGTT+TGG - chr8.2:83972364-83972383 MS.gene61563:CDS 25.0%
! TTGTCCTTTCATTTGTTTAA+AGG - chr8.2:83972013-83972032 MS.gene61563:CDS 25.0%
! TTTGAACAAACATCACAAAA+CGG - chr8.2:83971840-83971859 MS.gene61563:CDS 25.0%
! TTTGTGATGTTTGTTCAAAA+GGG + chr8.2:83971839-83971858 None:intergenic 25.0%
!! ATTTCTTTTACCCTTTTCTA+GGG - chr8.2:83973196-83973215 MS.gene61563:CDS 25.0%
!! TTTTGTGATGTTTGTTCAAA+AGG + chr8.2:83971840-83971859 None:intergenic 25.0%
!!! TAATATGTGGTCTTATATGA+AGG + chr8.2:83972802-83972821 None:intergenic 25.0%
!!! TTTTTGTTTATAATAGGGAC+CGG - chr8.2:83972252-83972271 MS.gene61563:intron 25.0%
AACCAGGTAATCAATATTCA+AGG + chr8.2:83973019-83973038 None:intergenic 30.0%
ACGTCCTTTAAACAAATGAA+AGG + chr8.2:83972020-83972039 None:intergenic 30.0%
AGATTTAGTTGGACTAATGA+AGG + chr8.2:83971872-83971891 None:intergenic 30.0%
AGGTAATCAATATTCAAGGA+AGG + chr8.2:83973015-83973034 None:intergenic 30.0%
CAATAATCATCATCATGAGT+TGG - chr8.2:83971759-83971778 MS.gene61563:CDS 30.0%
CAGAAAAACTACATCAACAT+GGG - chr8.2:83972509-83972528 MS.gene61563:intron 30.0%
GTTGTTAAAGCTAAGCAATA+TGG + chr8.2:83972899-83972918 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+TGG + chr8.2:83972938-83972957 None:intergenic 30.0%
! AAGGATATGATGATGATGTA+TGG - chr8.2:83973135-83973154 MS.gene61563:CDS 30.0%
! GATTTCTTTTACCCTTTTCT+AGG - chr8.2:83973195-83973214 MS.gene61563:CDS 30.0%
! TTCCTTGAATATTGATTACC+TGG - chr8.2:83973014-83973033 MS.gene61563:CDS 30.0%
!! GGTTTGAGTTTTAATCAACA+AGG + chr8.2:83972295-83972314 None:intergenic 30.0%
!! TTTTGTTTATAATAGGGACC+GGG - chr8.2:83972253-83972272 MS.gene61563:intron 30.0%
AAATGTACTAGGTTGTGGTT+TGG - chr8.2:83972417-83972436 MS.gene61563:intron 35.0%
AAGGGTAAAAGAAATCACGA+TGG + chr8.2:83973191-83973210 None:intergenic 35.0%
AATGAAAGGACAAAGTGAGA+TGG + chr8.2:83972006-83972025 None:intergenic 35.0%
ATACACACACCTTGAGTATT+TGG + chr8.2:83972607-83972626 None:intergenic 35.0%
ATCAATATTCAAGGAAGGTG+AGG + chr8.2:83973010-83973029 None:intergenic 35.0%
ATCATCACATGATTCAGTAC+TGG - chr8.2:83972957-83972976 MS.gene61563:CDS 35.0%
ATGTTTGTTCAAAAGGGTGA+GGG + chr8.2:83971833-83971852 None:intergenic 35.0%
CATTAGTCCAACTAAATCTC+AGG - chr8.2:83971873-83971892 MS.gene61563:CDS 35.0%
CTATATATGCAGAGGAATTG+AGG + chr8.2:83972635-83972654 None:intergenic 35.0%
CTATCTAGCTATATATGCAG+AGG + chr8.2:83972643-83972662 None:intergenic 35.0%
GCAGAAAAACTACATCAACA+TGG - chr8.2:83972508-83972527 MS.gene61563:intron 35.0%
GGGTATGAATGGAGAAAATA+TGG - chr8.2:83972561-83972580 MS.gene61563:intron 35.0%
GTAGAGGATCTTACAAAAGA+AGG - chr8.2:83971923-83971942 MS.gene61563:CDS 35.0%
GTTAAAGCTAAGCAATATGG+AGG + chr8.2:83972896-83972915 None:intergenic 35.0%
GTTGACAAGAACAAGATGTT+GGG + chr8.2:83971785-83971804 None:intergenic 35.0%
TCAATATTCAAGGAAGGTGA+GGG + chr8.2:83973009-83973028 None:intergenic 35.0%
TCCTCAATTCCAAATACTCA+AGG - chr8.2:83972595-83972614 MS.gene61563:intron 35.0%
TGTTGACAAGAACAAGATGT+TGG + chr8.2:83971786-83971805 None:intergenic 35.0%
TTATTACAAGTTGTCCAAGC+TGG + chr8.2:83971726-83971745 None:intergenic 35.0%
TTGAATTCTCTGCACTTGTT+TGG + chr8.2:83972770-83972789 None:intergenic 35.0%
! AATCTTGTTTGGTTGGAGTT+GGG + chr8.2:83972927-83972946 None:intergenic 35.0%
! ACCTTGAGTATTTGGAATTG+AGG + chr8.2:83972599-83972618 None:intergenic 35.0%
! GAAATATCTAAAGTGTGCTC+AGG + chr8.2:83973045-83973064 None:intergenic 35.0%
! TGAATCTGATGATGATCACA+AGG - chr8.2:83973116-83973135 MS.gene61563:CDS 35.0%
! TTCAGTACTGGAACATTGTA+AGG - chr8.2:83972969-83972988 MS.gene61563:CDS 35.0%
!! TATGTGGTCTTATATGAAGG+AGG + chr8.2:83972799-83972818 None:intergenic 35.0%
AAATATGCAGGGACTACTAC+AGG - chr8.2:83972710-83972729 MS.gene61563:intron 40.0%
AACTACATCAACATGGGAGA+AGG - chr8.2:83972515-83972534 MS.gene61563:intron 40.0%
ATTGTGATCATGAGGAGAAG+TGG + chr8.2:83972869-83972888 None:intergenic 40.0%
CAACCTAGTACATTTCAACG+AGG + chr8.2:83972412-83972431 None:intergenic 40.0%
CAGAATGTCCAACAGATGAT+GGG - chr8.2:83972541-83972560 MS.gene61563:intron 40.0%
CATCTGAGTTATTGCAAGTG+TGG + chr8.2:83972831-83972850 None:intergenic 40.0%
CATTCATACCCATCATCTGT+TGG + chr8.2:83972552-83972571 None:intergenic 40.0%
CGTTGAAATGTACTAGGTTG+TGG - chr8.2:83972412-83972431 MS.gene61563:intron 40.0%
CTTCCTCGTTGAAATGTACT+AGG - chr8.2:83972406-83972425 MS.gene61563:intron 40.0%
GAGATCTCCTGAGATTTAGT+TGG + chr8.2:83971883-83971902 None:intergenic 40.0%
GATGTTTGTTCAAAAGGGTG+AGG + chr8.2:83971834-83971853 None:intergenic 40.0%
TCAGAATGTCCAACAGATGA+TGG - chr8.2:83972540-83972559 MS.gene61563:intron 40.0%
TTGTGATCATGAGGAGAAGT+GGG + chr8.2:83972868-83972887 None:intergenic 40.0%
TTTGTAAGATCCTCTACCAG+TGG + chr8.2:83971920-83971939 None:intergenic 40.0%
! AAGGGACAATCTTGTTTGGT+TGG + chr8.2:83972934-83972953 None:intergenic 40.0%
! AGTACTGGAACATTGTAAGG+AGG - chr8.2:83972972-83972991 MS.gene61563:CDS 40.0%
! ATTGAGTGCTACTACTGACT+TGG + chr8.2:83973080-83973099 None:intergenic 40.0%
! CAATCTTGTTTGGTTGGAGT+TGG + chr8.2:83972928-83972947 None:intergenic 40.0%
!! CAACAGATGATGGGTATGAA+TGG - chr8.2:83972550-83972569 MS.gene61563:intron 40.0%
!! GAGGAAGTATTGTGATCATG+AGG + chr8.2:83972877-83972896 None:intergenic 40.0%
AGTGTGGTGGTCGTAATATG+TGG + chr8.2:83972815-83972834 None:intergenic 45.0%
CTGAGTTATTGCAAGTGTGG+TGG + chr8.2:83972828-83972847 None:intergenic 45.0%
TCACAACATACTTCCACCAC+TGG - chr8.2:83971901-83971920 MS.gene61563:CDS 45.0%
TCTGCACTTGTTTGGTTGCT+TGG + chr8.2:83972762-83972781 None:intergenic 45.0%
AAGTGTGCTCAGGAGAAACC+AGG + chr8.2:83973035-83973054 None:intergenic 50.0%
ATAGGGACCGGGATAATAGC+TGG - chr8.2:83972264-83972283 MS.gene61563:intron 50.0%
CATACTTCCACCACTGGTAG+AGG - chr8.2:83971907-83971926 MS.gene61563:CDS 50.0%
CGTGAGTTTGCAAACCAGCT+TGG - chr8.2:83971709-83971728 MS.gene61563:CDS 50.0%
GGAGCTACCAGCTATTATCC+CGG + chr8.2:83972274-83972293 None:intergenic 50.0%
GTAAGATCCTCTACCAGTGG+TGG + chr8.2:83971917-83971936 None:intergenic 50.0%
ATGGAGGAGGAGCTAGTGAG+AGG - chr8.2:83971685-83971704 MS.gene61563:CDS 55.0%
TGGAGGAGGAGCTAGTGAGA+GGG - chr8.2:83971686-83971705 MS.gene61563:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 83971673 83973227 83971673 ID=MS.gene61563
chr8.2 mRNA 83971673 83973227 83971673 ID=MS.gene61563.t1;Parent=MS.gene61563
chr8.2 exon 83972956 83973227 83972956 ID=MS.gene61563.t1.exon1;Parent=MS.gene61563.t1
chr8.2 CDS 83972956 83973227 83972956 ID=cds.MS.gene61563.t1;Parent=MS.gene61563.t1
chr8.2 exon 83972284 83972388 83972284 ID=MS.gene61563.t1.exon2;Parent=MS.gene61563.t1
chr8.2 CDS 83972284 83972388 83972284 ID=cds.MS.gene61563.t1;Parent=MS.gene61563.t1
chr8.2 exon 83971673 83972180 83971673 ID=MS.gene61563.t1.exon3;Parent=MS.gene61563.t1
chr8.2 CDS 83971673 83972180 83971673 ID=cds.MS.gene61563.t1;Parent=MS.gene61563.t1
Gene Sequence

>MS.gene61563

ATGAATGAGGCAATGGAGGAGGAGCTAGTGAGAGGGCGTGAGTTTGCAAACCAGCTTGGACAACTTGTAATAACATTGATGAAGAACAATAATCATCATCATGAGTTGGCCCAACATCTTGTTCTTGTCAACAACATTATCAACTCATTTACAAATACCCTCACCCTTTTGAACAAACATCACAAAACGGATTCTTCCTTCATTAGTCCAACTAAATCTCAGGAGATCTCACAACATACTTCCACCACTGGTAGAGGATCTTACAAAAGAAGGTACATATACTAATTTTTTGTTGTATCTACCATGTTTACTAATTCTTTTCTTATCATTCCATCTCACTTTGTCCTTTCATTTGTTTAAAGGACGTCAAACATCATTACATATTTTTAGCTAGTATATATTTAATTTATTTATTTATTTATTTATTTTTATAATAGTTTAAAATGAAATTATTATTGTTTGATGCTCTTTTTGATCATTATTATAAGCAAAAAATTATTTTTTTTTAGATTCATATGGAGCAATTCATGTATTTGATCAAATACATGAATTGCTCCATATGAATCTAAAAAAAGTAATTTTTTGTTTATAATAGGGACCGGGATAATAGCTGGTAGCTCCTTGTTGATTAAAACTCAAACCAATTATATATATAATATTTTTTAGGTTGAATTAATTAAATTGATACTATTTATAATCATGTTGTTCGTTTGGAGTTTGAACTTTTTTTTATCTTCCTCGTTGAAATGTACTAGGTTGTGGTTTGGAGTAGATTAGAATTGATTAAGAGTTTATGCAAAAAGAGTTAATGGACTTAATTTCTTGTAATTAATTTGCAGAAAAACTACATCAACATGGGAGAAGGTGTCAGAATGTCCAACAGATGATGGGTATGAATGGAGAAAATATGGTCAAAAAACAATCCTCAATTCCAAATACTCAAGGTGTGTGTATGTCGTCCTCAATTCCTCTGCATATATAGCTAGATAGATCTGTTTCCTACTAATAAATCTTCTCTTGATCCAATGAATTGAATTAAATATGCAGGGACTACTACAGGTGTACTCACAAGCTTGATCAAAGATGCCAAGCAACCAAACAAGTGCAGAGAATTCAAGAGAAGCCTCCTTCATATAAGACCACATATTACGACCACCACACTTGCAATAACTCAGATGAAATCATATTTGAACCCACTTCTCCTCATGATCACAATACTTCCTCCATATTGCTTAGCTTTAACAACACATTCCCAACTCCAACCAAACAAGATTGTCCCTTTTTATCATCACATGATTCAGTACTGGAACATTGTAAGGAGGAATTAGTAATTCCCTCACCTTCCTTGAATATTGATTACCTGGTTTCTCCTGAGCACACTTTAGATATTTCTATTTCTACAAGCCAAGTCAGTAGTAGCACTCAATCATCATCAACTACACTTGAATCTGATGATGATCACAAGGATATGATGATGATGTATGGCGATCTCTTCTATGATTCTGTTGAGCTTGACCATCGTGATTTCTTTTACCCTTTTCTAGGGCTTTTGTAG
Protein sequence

>MS.gene61563.t1

MNEAMEEELVRGREFANQLGQLVITLMKNNNHHHELAQHLVLVNNIINSFTNTLTLLNKHHKTDSSFISPTKSQEISQHTSTTGRGSYKRRKTTSTWEKVSECPTDDGYEWRKYGQKTILNSKYSRDYYRCTHKLDQRCQATKQVQRIQEKPPSYKTTYYDHHTCNNSDEIIFEPTSPHDHNTSSILLSFNNTFPTPTKQDCPFLSSHDSVLEHCKEELVIPSPSLNIDYLVSPEHTLDISISTSQVSSSTQSSSTTLESDDDHKDMMMMYGDLFYDSVELDHRDFFYPFLGLL