AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61601.t1 MTR_4g049790 68.362 629 106 6 1 602 1 563 0.0 750
MS.gene61601.t1 MTR_4g047580 66.491 570 132 7 33 602 30 540 0.0 682
MS.gene61601.t1 MTR_4g049760 67.695 551 125 5 23 573 25 522 0.0 643
MS.gene61601.t1 MTR_2g088000 43.038 553 219 18 44 579 118 591 1.03e-108 340
MS.gene61601.t1 MTR_2g023930 36.216 555 231 15 31 551 65 530 4.80e-81 266
MS.gene61601.t1 MTR_4g132430 57.018 228 84 6 317 538 105 324 4.68e-73 239
MS.gene61601.t1 MTR_4g132430 57.018 228 84 6 317 538 239 458 3.08e-72 241
MS.gene61601.t1 MTR_3g053330 47.479 238 95 5 319 550 231 444 7.18e-63 215
MS.gene61601.t1 MTR_7g110720 46.245 253 102 6 324 575 174 393 2.06e-56 196
MS.gene61601.t1 MTR_7g110720 46.245 253 102 6 324 575 201 420 2.54e-56 197
MS.gene61601.t1 MTR_2g045360 48.529 204 90 5 324 515 196 396 3.84e-47 172
MS.gene61601.t1 MTR_7g009730 51.613 124 54 1 296 413 170 293 1.49e-36 144
MS.gene61601.t1 MTR_4g094412 37.453 267 135 6 324 565 228 487 7.17e-36 141
MS.gene61601.t1 MTR_4g094412 37.453 267 135 6 324 565 219 478 9.37e-36 140
MS.gene61601.t1 MTR_4g107970 45.550 191 73 5 300 459 121 311 1.09e-32 132
MS.gene61601.t1 MTR_4g107970 45.550 191 73 5 300 459 198 388 1.73e-32 133
MS.gene61601.t1 MTR_5g042920 50.515 97 43 2 309 401 286 381 3.57e-24 106
MS.gene61601.t1 MTR_5g042920 37.037 108 64 3 340 447 152 255 7.26e-12 68.2
MS.gene61601.t1 MTR_3g056100 44.037 109 57 2 312 417 231 338 4.43e-24 105
MS.gene61601.t1 MTR_7g011820 47.959 98 50 1 315 412 386 482 4.74e-24 106
MS.gene61601.t1 MTR_3g056100 44.037 109 57 2 312 417 244 351 4.80e-24 105
MS.gene61601.t1 MTR_5g094430 55.000 80 35 1 322 401 213 291 6.26e-24 105
MS.gene61601.t1 MTR_3g056100 44.037 109 57 2 312 417 375 482 6.55e-24 106
MS.gene61601.t1 MTR_3g056100 44.037 109 57 2 312 417 388 495 6.72e-24 106
MS.gene61601.t1 MTR_5g094430 55.000 80 35 1 322 401 235 313 6.85e-24 105
MS.gene61601.t1 MTR_5g074400 42.222 135 69 3 271 401 352 481 1.56e-23 105
MS.gene61601.t1 MTR_5g094430 55.000 80 35 1 322 401 347 425 1.83e-23 105
MS.gene61601.t1 MTR_4g007060 35.099 151 74 4 316 466 105 231 5.98e-23 99.8
MS.gene61601.t1 MTR_4g007060 35.099 151 74 4 316 466 139 265 9.81e-23 99.8
MS.gene61601.t1 MTR_4g082580 51.852 81 38 1 321 401 260 339 1.41e-22 100
MS.gene61601.t1 MTR_3g009470 54.321 81 36 1 321 401 477 556 2.16e-22 102
MS.gene61601.t1 MTR_3g009470 46.875 64 32 2 340 403 281 342 1.50e-11 67.8
MS.gene61601.t1 MTR_3g031220 46.316 95 50 1 306 400 332 425 4.36e-22 100
MS.gene61601.t1 MTR_3g031220 40.230 87 46 3 317 403 180 260 7.22e-12 68.6
MS.gene61601.t1 MTR_7g071120 54.321 81 36 1 321 401 306 385 9.63e-22 99.4
MS.gene61601.t1 MTR_4g013260 53.165 79 36 1 321 399 318 395 1.62e-21 98.6
MS.gene61601.t1 MTR_4g013260 41.860 86 43 3 323 406 170 250 1.15e-11 67.8
MS.gene61601.t1 MTR_5g044695 67.925 53 17 0 317 369 55 107 1.74e-21 90.1
MS.gene61601.t1 MTR_7g080000 42.609 115 63 2 289 401 380 493 2.20e-21 99.4
MS.gene61601.t1 MTR_7g080020 50.617 81 39 1 321 401 475 554 8.01e-21 97.4
MS.gene61601.t1 MTR_5g097490 51.807 83 38 2 320 401 232 313 9.91e-21 95.1
MS.gene61601.t1 MTR_6g038890 67.925 53 17 0 317 369 166 218 1.75e-20 90.9
MS.gene61601.t1 MTR_3g106060 41.837 98 56 1 300 396 98 195 2.22e-20 92.4
MS.gene61601.t1 MTR_1g013790 36.290 124 64 4 290 399 39 161 2.40e-20 91.3
MS.gene61601.t1 MTR_7g109800 44.681 94 47 2 324 417 130 218 2.73e-20 92.0
MS.gene61601.t1 MTR_4g094588 40.741 108 63 1 326 433 165 271 4.64e-20 92.4
MS.gene61601.t1 MTR_2g105060 48.718 78 38 1 325 400 78 155 6.75e-20 89.7
MS.gene61601.t1 MTR_2g105060 48.718 78 38 1 325 400 153 230 6.84e-20 91.3
MS.gene61601.t1 MTR_8g096730 37.736 106 65 1 297 402 28 132 2.97e-19 85.1
MS.gene61601.t1 MTR_1g013760 43.478 92 52 0 324 415 125 216 3.25e-19 89.0
MS.gene61601.t1 MTR_7g100510 42.857 98 45 2 302 399 334 420 3.54e-19 90.9
MS.gene61601.t1 MTR_7g100510 43.836 73 39 2 340 412 190 260 2.49e-11 66.6
MS.gene61601.t1 MTR_7g079010 45.263 95 48 2 326 420 128 218 5.16e-19 86.7
MS.gene61601.t1 MTR_2g033820 47.500 80 41 1 324 403 188 266 6.45e-19 89.4
MS.gene61601.t1 MTR_1g009613 55.224 67 30 0 340 406 263 329 8.82e-19 88.6
MS.gene61601.t1 MTR_1g015140 51.351 74 35 1 324 397 87 159 9.49e-19 84.3
MS.gene61601.t1 MTR_4g094908 56.452 62 27 0 340 401 267 328 1.66e-18 87.8
MS.gene61601.t1 MTR_7g028415 47.727 88 38 2 329 416 83 162 2.74e-18 83.2
MS.gene61601.t1 MTR_7g028710 47.727 88 38 2 329 416 83 162 2.74e-18 83.2
MS.gene61601.t1 MTR_3g104750 39.252 107 57 2 291 397 63 161 3.46e-18 82.8
MS.gene61601.t1 MTR_1g086790 47.436 78 40 1 326 403 145 221 3.72e-18 86.3
MS.gene61601.t1 MTR_8g087000 47.436 78 36 1 336 413 73 145 7.29e-18 84.0
MS.gene61601.t1 MTR_5g016610 56.667 60 26 0 339 398 199 258 7.46e-18 84.3
MS.gene61601.t1 MTR_8g087000 48.000 75 34 1 339 413 77 146 7.93e-18 84.0
MS.gene61601.t1 MTR_2g032030 31.214 173 99 5 256 409 166 337 1.31e-17 86.7
MS.gene61601.t1 MTR_7g109600 50.746 67 33 0 335 401 49 115 1.32e-17 83.6
MS.gene61601.t1 MTR_4g130900 35.256 156 84 4 264 403 268 422 1.40e-17 86.7
MS.gene61601.t1 MTR_2g032030 31.214 173 99 5 256 409 166 337 1.67e-17 85.9
MS.gene61601.t1 MTR_2g024350 34.043 141 81 3 334 463 3 142 1.71e-17 82.4
MS.gene61601.t1 MTR_5g091390 47.436 78 40 1 326 403 144 220 3.05e-17 83.6
MS.gene61601.t1 MTR_1g070455 56.140 57 25 0 340 396 294 350 3.65e-17 84.0
MS.gene61601.t1 MTR_2g083870 44.304 79 44 0 330 408 71 149 7.15e-17 81.3
MS.gene61601.t1 MTR_8g007270 48.101 79 40 1 318 396 133 210 1.05e-16 80.1
MS.gene61601.t1 MTR_2g016770 50.000 64 32 0 336 399 32 95 1.20e-16 79.7
MS.gene61601.t1 MTR_2g016770 50.000 64 32 0 336 399 24 87 1.71e-16 79.0
MS.gene61601.t1 MTR_8g092010 34.559 136 82 5 270 402 39 170 2.11e-16 78.2
MS.gene61601.t1 MTR_4g122530 46.667 75 39 1 325 399 194 267 2.20e-16 82.0
MS.gene61601.t1 MTR_7g079040 46.667 75 40 0 335 409 150 224 2.52e-16 80.9
MS.gene61601.t1 MTR_3g095080 40.625 96 55 2 322 417 127 220 2.53e-16 79.0
MS.gene61601.t1 MTR_2g024380 44.186 86 46 1 325 410 239 322 3.67e-16 82.0
MS.gene61601.t1 MTR_3g095080 42.391 92 51 2 326 417 155 244 3.98e-16 79.0
MS.gene61601.t1 MTR_8g028565 46.667 75 40 0 335 409 151 225 6.68e-16 79.7
MS.gene61601.t1 MTR_8g098945 44.444 72 40 0 338 409 128 199 8.55e-16 78.6
MS.gene61601.t1 MTR_4g127040 53.448 58 27 0 339 396 245 302 1.04e-15 79.0
MS.gene61601.t1 MTR_5g043880 46.154 78 41 1 319 396 104 180 2.11e-15 77.4
MS.gene61601.t1 MTR_1g099600 41.935 93 52 1 337 429 183 273 3.30e-15 77.4
MS.gene61601.t1 MTR_1g077780 46.053 76 40 1 326 401 49 123 4.69e-15 73.2
MS.gene61601.t1 MTR_8g092140 36.842 114 69 3 298 410 118 229 1.48e-14 73.9
MS.gene61601.t1 MTR_3g095040 46.667 75 39 1 326 400 105 178 1.73e-14 73.2
MS.gene61601.t1 MTR_1g078260 48.611 72 35 2 326 396 234 304 1.19e-13 73.9
MS.gene61601.t1 MTR_6g086555 47.500 80 40 2 326 404 193 271 1.90e-13 73.2
MS.gene61601.t1 MTR_3g108960 42.029 69 39 1 328 396 304 371 2.88e-12 69.3
MS.gene61601.t1 MTR_3g031220 40.230 87 46 3 317 403 180 260 3.14e-12 68.9
MS.gene61601.t1 MTR_4g007060 40.984 61 36 0 316 376 139 199 4.36e-12 66.6
MS.gene61601.t1 MTR_3g009470 46.875 64 32 2 340 403 281 342 7.73e-12 68.6
MS.gene61601.t1 MTR_0117s0040 42.029 69 39 1 328 396 64 131 1.35e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61601.t1 AT4G04450 41.463 492 197 15 77 550 85 503 2.27e-84 274
MS.gene61601.t1 AT4G04450 41.079 482 193 15 87 550 1 409 1.08e-80 261
MS.gene61601.t1 AT1G62300 50.562 267 109 8 318 566 291 552 1.16e-66 228
MS.gene61601.t1 AT4G22070 54.400 250 86 6 318 550 276 514 5.08e-61 212
MS.gene61601.t1 AT4G22070 54.400 250 86 6 318 550 276 514 5.08e-61 212
MS.gene61601.t1 AT4G22070 54.400 250 86 6 318 550 276 514 5.08e-61 212
MS.gene61601.t1 AT4G22070 54.400 250 86 6 318 550 276 514 5.08e-61 212
MS.gene61601.t1 AT4G01720 42.712 295 128 8 273 547 170 443 8.08e-47 172
MS.gene61601.t1 AT5G15130 36.531 271 121 7 319 551 165 422 5.28e-38 147
MS.gene61601.t1 AT5G15130 36.531 271 121 7 319 551 207 464 5.64e-38 148
MS.gene61601.t1 AT1G68150 62.887 97 36 0 324 420 220 316 5.90e-38 145
MS.gene61601.t1 AT1G69810 44.318 176 87 5 293 467 103 268 4.85e-35 135
MS.gene61601.t1 AT1G69810 44.318 176 87 5 293 467 161 326 6.20e-35 136
MS.gene61601.t1 AT1G18860 39.286 224 112 5 268 477 173 386 1.93e-33 135
MS.gene61601.t1 AT2G03340 44.828 116 54 2 286 401 371 476 3.90e-24 107
MS.gene61601.t1 AT2G03340 51.667 60 27 2 340 399 251 308 1.91e-11 67.4
MS.gene61601.t1 AT1G13960 55.696 79 34 1 321 399 238 315 7.59e-24 103
MS.gene61601.t1 AT1G13960 47.222 72 36 2 340 411 77 146 1.08e-11 67.4
MS.gene61601.t1 AT4G26640 52.500 80 37 1 322 401 188 266 9.53e-24 103
MS.gene61601.t1 AT4G26640 52.500 80 37 1 322 401 188 266 9.53e-24 103
MS.gene61601.t1 AT4G26640 52.500 80 37 1 322 401 188 266 9.53e-24 103
MS.gene61601.t1 AT4G26640 52.500 80 37 1 322 401 188 266 9.53e-24 103
MS.gene61601.t1 AT1G13960 55.696 79 34 1 321 399 391 468 1.03e-23 105
MS.gene61601.t1 AT1G13960 47.222 72 36 2 340 411 230 299 8.89e-12 68.2
MS.gene61601.t1 AT2G38470 54.321 81 36 1 321 401 344 423 1.98e-23 104
MS.gene61601.t1 AT2G38470 40.000 85 49 2 340 424 185 267 6.86e-11 65.5
MS.gene61601.t1 AT4G26640 52.500 80 37 1 322 401 292 370 2.79e-23 103
MS.gene61601.t1 AT4G26640 52.500 80 37 1 322 401 324 402 2.96e-23 104
MS.gene61601.t1 AT4G26640 52.500 80 37 1 322 401 364 442 3.63e-23 104
MS.gene61601.t1 AT5G56270 53.086 81 37 1 321 401 469 548 1.15e-21 100
MS.gene61601.t1 AT2G04880 45.055 91 49 1 309 399 253 342 1.21e-21 99.0
MS.gene61601.t1 AT2G04880 49.275 69 31 3 335 402 107 172 1.18e-11 67.8
MS.gene61601.t1 AT4G31800 43.810 105 54 1 318 417 85 189 1.35e-21 94.7
MS.gene61601.t1 AT2G04880 45.055 91 49 1 309 399 277 366 1.56e-21 98.6
MS.gene61601.t1 AT2G04880 49.275 69 31 3 335 402 107 172 1.21e-11 67.8
MS.gene61601.t1 AT3G01080 48.837 86 43 1 314 399 319 403 1.90e-21 98.2
MS.gene61601.t1 AT3G01080 48.837 86 43 1 314 399 281 365 1.94e-21 97.8
MS.gene61601.t1 AT4G31800 43.810 105 54 1 318 417 150 254 2.02e-21 95.9
MS.gene61601.t1 AT2G25000 32.584 178 103 4 239 402 14 188 2.37e-21 94.4
MS.gene61601.t1 AT5G07100 48.235 85 43 1 319 403 121 204 6.52e-21 92.0
MS.gene61601.t1 AT5G07100 48.235 85 43 1 319 403 121 204 6.52e-21 92.0
MS.gene61601.t1 AT5G07100 48.235 85 43 1 319 403 121 204 6.52e-21 92.0
MS.gene61601.t1 AT5G07100 48.235 85 43 1 319 403 121 204 6.52e-21 92.0
MS.gene61601.t1 AT5G07100 48.235 85 43 1 319 403 214 297 1.39e-20 93.2
MS.gene61601.t1 AT2G25000 34.211 152 94 3 254 402 18 166 1.72e-20 91.3
MS.gene61601.t1 AT2G25000 34.211 152 94 3 254 402 18 166 1.72e-20 91.3
MS.gene61601.t1 AT5G41570 45.455 99 49 2 326 424 85 178 1.96e-20 89.7
MS.gene61601.t1 AT1G80840 46.154 78 40 1 325 400 130 207 2.14e-20 92.8
MS.gene61601.t1 AT2G25000 34.211 152 94 3 254 402 61 209 2.94e-20 91.7
MS.gene61601.t1 AT1G29860 50.000 80 39 1 324 403 121 199 3.41e-20 91.7
MS.gene61601.t1 AT1G64000 45.833 96 47 2 321 416 96 186 4.07e-20 89.4
MS.gene61601.t1 AT4G18170 43.000 100 56 1 326 425 159 257 7.10e-20 91.3
MS.gene61601.t1 AT5G26170 52.778 72 33 1 325 396 99 169 1.17e-19 87.0
MS.gene61601.t1 AT2G30250 46.512 86 45 1 318 403 307 391 2.68e-19 90.9
MS.gene61601.t1 AT5G46350 52.703 74 34 1 326 399 170 242 4.50e-19 89.4
MS.gene61601.t1 AT2G23320 59.322 59 24 0 340 398 241 299 5.35e-19 89.0
MS.gene61601.t1 AT1G29280 50.000 70 35 0 330 399 65 134 6.46e-19 87.4
MS.gene61601.t1 AT4G30935 38.710 124 74 2 307 429 299 421 6.86e-19 90.5
MS.gene61601.t1 AT5G49520 46.250 80 42 1 324 403 206 284 7.26e-19 89.7
MS.gene61601.t1 AT2G30590 57.812 64 26 1 340 402 314 377 7.97e-19 89.4
MS.gene61601.t1 AT5G13080 52.055 73 34 1 326 398 54 125 1.85e-18 82.8
MS.gene61601.t1 AT1G55600 48.684 76 38 1 326 401 294 368 3.01e-18 88.6
MS.gene61601.t1 AT4G24240 56.667 60 26 0 339 398 281 340 3.58e-18 87.0
MS.gene61601.t1 AT4G26440 51.316 76 36 1 326 401 359 433 3.74e-18 88.6
MS.gene61601.t1 AT3G58710 46.575 73 39 0 330 402 61 133 1.72e-17 83.6
MS.gene61601.t1 AT3G58710 46.575 73 39 0 330 402 62 134 1.75e-17 83.6
MS.gene61601.t1 AT2G46130 47.619 84 42 2 315 397 5 87 1.92e-17 79.0
MS.gene61601.t1 AT3G01970 51.389 72 34 1 325 396 51 121 1.92e-17 80.1
MS.gene61601.t1 AT5G28650 60.377 53 21 0 344 396 267 319 2.10e-17 84.3
MS.gene61601.t1 AT5G64810 46.809 94 46 2 306 396 74 166 2.56e-17 81.3
MS.gene61601.t1 AT2G44745 39.286 112 63 3 288 396 92 201 3.42e-17 81.3
MS.gene61601.t1 AT3G62340 52.703 74 34 1 326 399 105 177 3.52e-17 82.8
MS.gene61601.t1 AT2G47260 45.783 83 44 1 324 406 159 240 4.31e-17 83.6
MS.gene61601.t1 AT3G04670 57.895 57 24 0 340 396 263 319 4.60e-17 83.2
MS.gene61601.t1 AT4G01250 46.429 84 43 1 326 409 117 198 4.96e-17 82.8
MS.gene61601.t1 AT4G31550 57.895 57 24 0 340 396 246 302 6.24e-17 82.8
MS.gene61601.t1 AT4G31550 57.895 57 24 0 340 396 247 303 6.32e-17 82.8
MS.gene61601.t1 AT5G52830 45.455 77 42 0 333 409 159 235 6.77e-17 83.2
MS.gene61601.t1 AT2G24570 57.895 57 24 0 340 396 244 300 8.02e-17 82.4
MS.gene61601.t1 AT2G34830 43.011 93 46 1 321 406 190 282 1.12e-16 83.2
MS.gene61601.t1 AT1G30650 43.011 93 46 1 321 406 192 284 1.32e-16 83.2
MS.gene61601.t1 AT2G34830 43.011 93 46 1 321 406 199 291 1.35e-16 83.2
MS.gene61601.t1 AT5G45050 26.337 243 160 6 267 502 971 1201 3.10e-16 83.6
MS.gene61601.t1 AT5G45050 26.337 243 160 6 267 502 1082 1312 3.20e-16 83.6
MS.gene61601.t1 AT5G45050 26.337 243 160 6 267 502 1110 1340 3.39e-16 83.2
MS.gene61601.t1 AT4G23550 44.872 78 43 0 334 411 135 212 3.43e-16 80.5
MS.gene61601.t1 AT4G39410 50.704 71 34 1 326 396 210 279 2.56e-15 77.8
MS.gene61601.t1 AT2G37260 53.846 65 29 1 334 398 262 325 3.22e-15 77.8
MS.gene61601.t1 AT2G37260 48.529 68 28 3 340 402 84 149 1.62e-11 66.6
MS.gene61601.t1 AT2G37260 53.846 65 29 1 334 398 264 327 3.22e-15 77.8
MS.gene61601.t1 AT2G37260 48.529 68 28 3 340 402 86 151 1.55e-11 66.6
MS.gene61601.t1 AT1G69310 44.000 75 41 1 322 396 130 203 3.89e-15 76.6
MS.gene61601.t1 AT1G69310 44.000 75 41 1 322 396 130 203 3.89e-15 76.6
MS.gene61601.t1 AT1G69310 44.000 75 41 1 322 396 130 203 3.89e-15 76.6
MS.gene61601.t1 AT2G37260 53.846 65 29 1 334 398 344 407 4.84e-15 78.2
MS.gene61601.t1 AT2G37260 48.529 68 28 3 340 402 166 231 1.81e-11 67.0
MS.gene61601.t1 AT2G46130 45.238 84 40 3 315 397 5 83 4.50e-13 66.2
MS.gene61601.t1 AT2G21900 42.029 69 39 1 334 402 104 171 4.65e-13 68.9
MS.gene61601.t1 AT5G45260 31.847 157 87 4 269 413 1136 1284 2.39e-12 70.9
MS.gene61601.t1 AT4G31800 48.438 64 28 1 318 376 150 213 6.02e-12 66.6

Find 108 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGTTACACCATCTTTAT+TGG 0.095497 4.1:+48059852 MS.gene61601:CDS
CCAAAACTCTGAGGGATTAA+AGG 0.176833 4.1:-48063209 None:intergenic
GACAAAGCTGCAGGAATATT+TGG 0.214770 4.1:-48063386 None:intergenic
GTTCTCTTCTCTTCTGAATT+AGG 0.215204 4.1:-48060121 None:intergenic
GCTGCTATTACATCCATTAT+TGG 0.245842 4.1:+48063410 MS.gene61601:CDS
TAAAGTTTAGGTCTTGTAAT+TGG 0.259816 4.1:-48063601 None:intergenic
CCTTTAATCCCTCAGAGTTT+TGG 0.262834 4.1:+48063209 MS.gene61601:CDS
ACTGGGGCCAAGGAAATTTA+TGG 0.276997 4.1:+48061544 MS.gene61601:CDS
ACTGTTTGAGCAGTAATATT+TGG 0.280261 4.1:-48063341 None:intergenic
GGGAAAGAGTTGTTATTAAC+TGG 0.286280 4.1:-48059620 None:intergenic
GCGTTCCTTTGTGGAGTATT+TGG 0.301041 4.1:-48063170 None:intergenic
CGTAAGGGTAAGAAAGTTAA+AGG 0.311737 4.1:+48061464 MS.gene61601:CDS
GATAAGGTTAAGGAAGTTAA+AGG 0.318235 4.1:+48061704 MS.gene61601:CDS
AGAGCTTGAACAAACGAAAA+TGG 0.333537 4.1:+48061355 MS.gene61601:CDS
GATAAGGTTAAGGAAGTTAA+AGG 0.335137 4.1:+48061584 MS.gene61601:CDS
AGCTGACCCTTCACAAATAT+TGG 0.335185 4.1:+48063313 MS.gene61601:CDS
CCAAGGAAATTTATGGAACT+TGG 0.341755 4.1:+48061551 MS.gene61601:CDS
AGAAGAAACTTACATGCTTT+CGG 0.356423 4.1:-48062238 None:intergenic
GGATGTCAATGGAGAAAGTA+TGG 0.356478 4.1:+48062143 MS.gene61601:CDS
CTACTAGTATTGATAGTAAT+AGG 0.368547 4.1:-48060067 None:intergenic
AGAGAAGAGAACTAAGAGTA+TGG 0.375742 4.1:+48060132 MS.gene61601:CDS
AACTGAGAATGGTGGAGTAC+TGG 0.377375 4.1:+48061526 MS.gene61601:CDS
CTGCAGCGATAATAAGCTTT+AGG 0.381386 4.1:-48062194 None:intergenic
AACTGATTTGCGTTCCTTTG+TGG 0.385254 4.1:-48063179 None:intergenic
TTTCAGATGGCTATTCTTCA+AGG 0.389126 4.1:+48061332 MS.gene61601:intron
AAAAGGAAATTTGATGATGC+TGG 0.391734 4.1:+48061671 MS.gene61601:CDS
GCTGCTGATAATAATAATAA+TGG 0.393320 4.1:+48063461 MS.gene61601:CDS
GCCATTTCTTTAGCTGCTGC+AGG 0.395885 4.1:-48062975 None:intergenic
TCAATTGTAATAGTTGGATA+TGG 0.399033 4.1:-48063134 None:intergenic
CTTTAGCTGCTGCAGGTAAA+GGG 0.402829 4.1:-48062968 None:intergenic
GAAATTTATGGAACTTGGAT+TGG 0.404712 4.1:+48061556 MS.gene61601:CDS
TCTTTAGCTGCTGCAGGTAA+AGG 0.405534 4.1:-48062969 None:intergenic
ACTTGGATTGGCTACTGATA+AGG 0.406023 4.1:+48061568 MS.gene61601:CDS
TAACATCCTCATTCTTACTT+AGG 0.406214 4.1:-48061940 None:intergenic
GCAGCAGCAGTGTTGTTGTT+TGG 0.408470 4.1:-48063443 None:intergenic
CTTTAACTTTCTTACCCTTA+CGG 0.409546 4.1:-48061463 None:intergenic
GCTACCATTGCTATTTCCTT+CGG 0.410299 4.1:-48063495 None:intergenic
TCAAGGTTGTTAGTATCATC+AGG 0.414586 4.1:-48059641 None:intergenic
TGATGGGAAGGAACGAAATC+AGG 0.420611 4.1:+48063574 MS.gene61601:CDS
CCAAGTTCCATAAATTTCCT+TGG 0.423079 4.1:-48061551 None:intergenic
GTGTAATCAATTGTAATAGT+TGG 0.425606 4.1:-48063140 None:intergenic
AACTTACATGCTTTCGGACT+GGG 0.430854 4.1:-48062232 None:intergenic
AAAATGAGAATTAAGAATGA+TGG 0.434196 4.1:+48061638 MS.gene61601:CDS
TGGCTGAGTATCACCAATAA+TGG 0.440113 4.1:-48063423 None:intergenic
ATTGGCTACTGATAAGGTTA+AGG 0.444001 4.1:+48061574 MS.gene61601:CDS
GTATGAATATGATCATTGTC+AGG 0.450321 4.1:-48059832 None:intergenic
ACCTGCAGCAGCTAAAGAAA+TGG 0.455287 4.1:+48062974 MS.gene61601:CDS
ATTGGCTACTGATAAGGTTA+AGG 0.459989 4.1:+48061694 MS.gene61601:CDS
AGCTTTAGTTCCAATAAAGA+TGG 0.463299 4.1:-48059862 None:intergenic
ACTGAGAATGGTGGAGTACT+GGG 0.475263 4.1:+48061527 MS.gene61601:CDS
ACATGTGGCATCAACAATGA+TGG 0.482281 4.1:+48063557 MS.gene61601:CDS
GAAATTTGATGATGCTGGAT+TGG 0.483257 4.1:+48061676 MS.gene61601:CDS
ATATGATCATTGTCAGGGAC+AGG 0.484701 4.1:-48059826 None:intergenic
GCATCAACATCAAGCAATGA+TGG 0.494138 4.1:+48063035 MS.gene61601:CDS
TCTAGAAGTCAAGATCAGTT+AGG 0.495524 4.1:+48061875 MS.gene61601:CDS
GTTGGTGTCAAGGCAATGTA+AGG 0.496162 4.1:+48061784 MS.gene61601:CDS
TGCTGGATTGGCTACTGATA+AGG 0.503894 4.1:+48061688 MS.gene61601:CDS
GCTTTCGGACTGGGCAACCA+TGG 0.504496 4.1:-48062223 None:intergenic
ATGATGGAGAATTAATGAAA+AGG 0.504955 4.1:+48061654 MS.gene61601:CDS
AAACTTACATGCTTTCGGAC+TGG 0.512195 4.1:-48062233 None:intergenic
GAGAGTGATGCAAGACCGTA+AGG 0.513027 4.1:+48061448 MS.gene61601:CDS
GGTATTGCCAATATTTGTGA+AGG 0.514432 4.1:-48063320 None:intergenic
TAGTAGTGATCAATCTATGA+TGG 0.520634 4.1:+48060084 MS.gene61601:CDS
CGATAATAAGCTTTAGGACA+CGG 0.531100 4.1:-48062188 None:intergenic
GTTGTAATCACAACTTATGA+AGG 0.531127 4.1:+48062933 MS.gene61601:CDS
TTATTGAGTTAGATCACTGA+TGG 0.542017 4.1:+48062122 MS.gene61601:intron
TGGGACTAAGTTTCAACTCA+AGG 0.543159 4.1:-48059658 None:intergenic
ATGGTGGAGTACTGGGGCCA+AGG 0.545172 4.1:+48061534 MS.gene61601:CDS
CTTTCGGACTGGGCAACCAT+GGG 0.546480 4.1:-48062222 None:intergenic
AGGAATTTCCAAAACTCTGA+GGG 0.547821 4.1:-48063217 None:intergenic
ACTTCAGAATGGTGGAGAGT+TGG 0.548067 4.1:+48061766 MS.gene61601:CDS
AGTATTGATAGTAATAGGAA+TGG 0.556477 4.1:-48060062 None:intergenic
AAAGGAAAAGAAGTGTTCAC+TGG 0.557236 4.1:+48061722 MS.gene61601:CDS
GTATTGATAGTAATAGGAAT+GGG 0.563883 4.1:-48060061 None:intergenic
TATCGCTGCAGCACGACCCA+TGG 0.564450 4.1:+48062206 MS.gene61601:CDS
ATAGCAGCTGACAAAGCTGC+AGG 0.574982 4.1:-48063395 None:intergenic
GAAGAGAACTAAGAGTATGG+AGG 0.575623 4.1:+48060135 MS.gene61601:CDS
GATAATAAGCTTTAGGACAC+GGG 0.575823 4.1:-48062187 None:intergenic
GATCAATCTATGATGGATGA+TGG 0.577380 4.1:+48060091 MS.gene61601:CDS
AGATCACTGATGGATGTCAA+TGG 0.579642 4.1:+48062132 MS.gene61601:intron
AGCAACAAAATTATCACATG+TGG 0.580366 4.1:+48063542 MS.gene61601:CDS
TAGCTGCTGCAGGTAAAGGG+TGG 0.582781 4.1:-48062965 None:intergenic
GTATTGCCAATATTTGTGAA+GGG 0.582929 4.1:-48063319 None:intergenic
CATGTGGCATCAACAATGAT+GGG 0.583795 4.1:+48063558 MS.gene61601:CDS
TACAAATGCTGATATTGTGA+TGG 0.589604 4.1:+48061820 MS.gene61601:CDS
GATAGTCCTAAGTAAGAATG+AGG 0.591251 4.1:+48061934 MS.gene61601:CDS
ATGGTGGAGAGTTGGTGTCA+AGG 0.595504 4.1:+48061774 MS.gene61601:CDS
TGGCATCAACAATGATGGGA+AGG 0.604261 4.1:+48063562 MS.gene61601:CDS
ATTAACTGGAACTGAAGCCA+TGG 0.605747 4.1:-48059606 None:intergenic
TTGAGGGATCAGAGAAGCTG+AGG 0.609486 4.1:-48063237 None:intergenic
AATATTTGGACTAGCAGCAA+TGG 0.612014 4.1:-48063372 None:intergenic
TATGAATATGATCATTGTCA+GGG 0.613441 4.1:-48059831 None:intergenic
GATGTCAATGGAGAAAGTAT+GGG 0.615340 4.1:+48062144 MS.gene61601:CDS
TTAAAACTTAACAGGTACAA+AGG 0.618245 4.1:+48062892 MS.gene61601:intron
TGTTAATGTTGATAATGTTG+AGG 0.619880 4.1:+48061958 MS.gene61601:CDS
AAGTCAAGATCAGTTAGGAT+CGG 0.620379 4.1:+48061880 MS.gene61601:CDS
TATGATCATTGTCAGGGACA+GGG 0.624825 4.1:-48059825 None:intergenic
CAAGGTTGTTAGTATCATCA+GGG 0.625070 4.1:-48059640 None:intergenic
GTCACCGAAGGAAATAGCAA+TGG 0.626521 4.1:+48063491 MS.gene61601:CDS
AATGGCAACAATGTCACCGA+AGG 0.626879 4.1:+48063479 MS.gene61601:CDS
GAGGAATTTCCAAAACTCTG+AGG 0.632072 4.1:-48063218 None:intergenic
AGCTAGATCAGAAGAAACCA+TGG 0.635656 4.1:+48062012 MS.gene61601:CDS
GGACAGAGACAACTTCATGA+TGG 0.651443 4.1:-48059804 None:intergenic
GAATATATTACAATTACATG+CGG 0.660089 4.1:+48061414 MS.gene61601:CDS
AATCTCCAAATACTCCACAA+AGG 0.678231 4.1:+48063165 MS.gene61601:CDS
CTGAGAATGGTGGAGTACTG+GGG 0.687268 4.1:+48061528 MS.gene61601:CDS
GTTGCAATACTTGAAGAACA+AGG 0.694121 4.1:-48063095 None:intergenic
AGAGTGATGCAAGACCGTAA+GGG 0.707223 4.1:+48061449 MS.gene61601:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAATCACATAAAAAA+CGG - chr4.1:48061296-48061315 None:intergenic 10.0%
!! ATATATATATATATGATTCT+TGG + chr4.1:48060467-48060486 MS.gene61601:intron 10.0%
!! GTAAAAAAAATAATAACAAT+GGG - chr4.1:48059914-48059933 None:intergenic 10.0%
!!! ATTAATTCTTTTTAGTAAAA+AGG - chr4.1:48062100-48062119 None:intergenic 10.0%
!!! TTATTTTCTCAAATTATTAT+TGG + chr4.1:48061000-48061019 MS.gene61601:intron 10.0%
!! AGCAAAAAAAATTAAAGTTT+AGG - chr4.1:48063616-48063635 None:intergenic 15.0%
!! CGTAAAAAAAATAATAACAA+TGG - chr4.1:48059915-48059934 None:intergenic 15.0%
!! TAATACAATTAAAACTTAAC+AGG + chr4.1:48062884-48062903 MS.gene61601:intron 15.0%
!! TAATTAAATTACTTATGAAG+TGG + chr4.1:48062840-48062859 MS.gene61601:intron 15.0%
!! TATAACATAATTATTAGTTG+TGG - chr4.1:48060610-48060629 None:intergenic 15.0%
!! TGTATTATACTTATAAATGT+AGG - chr4.1:48060534-48060553 None:intergenic 15.0%
!! TTTAGTAAATACATGTAATT+TGG - chr4.1:48062272-48062291 None:intergenic 15.0%
!!! TTTTGACTCAATAAAATTAA+AGG - chr4.1:48060225-48060244 None:intergenic 15.0%
!! AAAAAATTTAAAAGAAAGCG+AGG - chr4.1:48060363-48060382 None:intergenic 20.0%
!! AAAATGAGAATTAAGAATGA+TGG + chr4.1:48061638-48061657 MS.gene61601:CDS 20.0%
!! ATATATATATGATTCTTGGT+TGG + chr4.1:48060471-48060490 MS.gene61601:intron 20.0%
!! GAATATATTACAATTACATG+CGG + chr4.1:48061414-48061433 MS.gene61601:CDS 20.0%
!! TAATTTCATTAAATTCTGCT+AGG - chr4.1:48060181-48060200 None:intergenic 20.0%
!!! AATTTTATTGAGTCAAAACT+GGG + chr4.1:48060227-48060246 MS.gene61601:intron 20.0%
!!! AATTTTGATTGGTTTTGATT+AGG - chr4.1:48063266-48063285 None:intergenic 20.0%
!!! ACATGCATATTTTAAAACAT+TGG + chr4.1:48062447-48062466 MS.gene61601:intron 20.0%
!!! TAATTTTATTGAGTCAAAAC+TGG + chr4.1:48060226-48060245 MS.gene61601:intron 20.0%
!!! TAATTTTTTTCACAAAGAAG+AGG - chr4.1:48061105-48061124 None:intergenic 20.0%
!!! TTCTACTATGTTATTCTTTT+TGG + chr4.1:48060381-48060400 MS.gene61601:intron 20.0%
! AAAATGTAACAGTTTATGTC+AGG - chr4.1:48060974-48060993 None:intergenic 25.0%
! AAAGGAAAAAAAGTCTTTGA+TGG + chr4.1:48061482-48061501 MS.gene61601:CDS 25.0%
! AACAATGGGATATTGAATTA+TGG - chr4.1:48059900-48059919 None:intergenic 25.0%
! ATTTAATTAGCGTACTATGT+CGG - chr4.1:48060798-48060817 None:intergenic 25.0%
! CAATAAACTCAAATCCAAAA+TGG + chr4.1:48062800-48062819 MS.gene61601:intron 25.0%
! CACTGACATACATATAAAAT+CGG - chr4.1:48061055-48061074 None:intergenic 25.0%
! CCAACAAAATCAAAATACAT+TGG - chr4.1:48061196-48061215 None:intergenic 25.0%
! GCTGCTGATAATAATAATAA+TGG + chr4.1:48063461-48063480 MS.gene61601:CDS 25.0%
! GTCATATTCATTAATTAACG+TGG - chr4.1:48060702-48060721 None:intergenic 25.0%
! GTGTAATCAATTGTAATAGT+TGG - chr4.1:48063143-48063162 None:intergenic 25.0%
! TAAATACATAGATTGCTGAA+TGG - chr4.1:48062660-48062679 None:intergenic 25.0%
! TAGAACACTATTAACATGAT+GGG + chr4.1:48061168-48061187 MS.gene61601:intron 25.0%
! TATGAATATGATCATTGTCA+GGG - chr4.1:48059834-48059853 None:intergenic 25.0%
! TCAAAATATGCAGTTATGTT+TGG + chr4.1:48062710-48062729 MS.gene61601:intron 25.0%
! TCAATTGTAATAGTTGGATA+TGG - chr4.1:48063137-48063156 None:intergenic 25.0%
! TTAAAACTTAACAGGTACAA+AGG + chr4.1:48062892-48062911 MS.gene61601:intron 25.0%
! TTAGAACACTATTAACATGA+TGG + chr4.1:48061167-48061186 MS.gene61601:intron 25.0%
!! AATCACATAAAAAACGGATT+TGG - chr4.1:48061290-48061309 None:intergenic 25.0%
!! ACTAAAAATGTTTCTGTATG+TGG - chr4.1:48062522-48062541 None:intergenic 25.0%
!! ATGATGGAGAATTAATGAAA+AGG + chr4.1:48061654-48061673 MS.gene61601:CDS 25.0%
!! CAAAACCAATCAAAATTTTC+TGG + chr4.1:48063269-48063288 MS.gene61601:CDS 25.0%
!! CATGTTAATAGTGTTCTAAA+AGG - chr4.1:48061166-48061185 None:intergenic 25.0%
!! GTATTGATAGTAATAGGAAT+GGG - chr4.1:48060064-48060083 None:intergenic 25.0%
!! TATGTTTCTATGCTAGAAAA+TGG + chr4.1:48062621-48062640 MS.gene61601:intron 25.0%
!! TGTGATAATTTTGTTGCTAT+TGG - chr4.1:48063540-48063559 None:intergenic 25.0%
!! TTCATTGAACTATTTTCAGA+TGG + chr4.1:48061319-48061338 MS.gene61601:intron 25.0%
!!! AGTATTGATAGTAATAGGAA+TGG - chr4.1:48060065-48060084 None:intergenic 25.0%
!!! CCAATGTATTTTGATTTTGT+TGG + chr4.1:48061193-48061212 MS.gene61601:intron 25.0%
!!! CTACTAGTATTGATAGTAAT+AGG - chr4.1:48060070-48060089 None:intergenic 25.0%
!!! CTATGTTATTCTTTTTGGAA+AGG + chr4.1:48060386-48060405 MS.gene61601:intron 25.0%
!!! TGTTAATGTTGATAATGTTG+AGG + chr4.1:48061958-48061977 MS.gene61601:CDS 25.0%
AAGAAAAAGAGACTTCAGAA+TGG + chr4.1:48061755-48061774 MS.gene61601:CDS 30.0%
ACGTTCGAATAAAACATGTT+AGG - chr4.1:48061259-48061278 None:intergenic 30.0%
ACTGTTTGAGCAGTAATATT+TGG - chr4.1:48063344-48063363 None:intergenic 30.0%
AGAACACTATTAACATGATG+GGG + chr4.1:48061169-48061188 MS.gene61601:intron 30.0%
AGAAGAAACTTACATGCTTT+CGG - chr4.1:48062241-48062260 None:intergenic 30.0%
AGCAACAAAATTATCACATG+TGG + chr4.1:48063542-48063561 MS.gene61601:CDS 30.0%
AGTTTATGTCAGGATCATAT+TGG - chr4.1:48060964-48060983 None:intergenic 30.0%
ATAATGCGAAAGCAATCAAT+AGG - chr4.1:48062313-48062332 None:intergenic 30.0%
CGTTCGAATAAAACATGTTA+GGG - chr4.1:48061258-48061277 None:intergenic 30.0%
GAAATTTATGGAACTTGGAT+TGG + chr4.1:48061556-48061575 MS.gene61601:CDS 30.0%
GATAAGGTTAAGGAAGTTAA+AGG + chr4.1:48061584-48061603 MS.gene61601:CDS 30.0%
GTATGAATATGATCATTGTC+AGG - chr4.1:48059835-48059854 None:intergenic 30.0%
GTATTGCCAATATTTGTGAA+GGG - chr4.1:48063322-48063341 None:intergenic 30.0%
GTTGTAATCACAACTTATGA+AGG + chr4.1:48062933-48062952 MS.gene61601:CDS 30.0%
TAACATCCTCATTCTTACTT+AGG - chr4.1:48061943-48061962 None:intergenic 30.0%
TAATGCGAAAGCAATCAATA+GGG - chr4.1:48062312-48062331 None:intergenic 30.0%
TACAAATGCTGATATTGTGA+TGG + chr4.1:48061820-48061839 MS.gene61601:CDS 30.0%
TACTGTTACACCATCTTTAT+TGG + chr4.1:48059852-48059871 MS.gene61601:CDS 30.0%
TAGTAGTGATCAATCTATGA+TGG + chr4.1:48060084-48060103 MS.gene61601:CDS 30.0%
TTATTGAGTTAGATCACTGA+TGG + chr4.1:48062122-48062141 MS.gene61601:intron 30.0%
! ACACTTTTACATACTTACCA+TGG - chr4.1:48062032-48062051 None:intergenic 30.0%
! AGCTTTAGTTCCAATAAAGA+TGG - chr4.1:48059865-48059884 None:intergenic 30.0%
! ATTTTCATTGGAACTAGGAA+AGG - chr4.1:48059716-48059735 None:intergenic 30.0%
! CCTCAATACTCAAATTTTCA+GGG + chr4.1:48060926-48060945 MS.gene61601:intron 30.0%
! CTTTAACTTTCTTACCCTTA+CGG - chr4.1:48061466-48061485 None:intergenic 30.0%
! TATATGATTCTTGGTTGGTT+TGG + chr4.1:48060476-48060495 MS.gene61601:intron 30.0%
! TTTTCATTGGAACTAGGAAA+GGG - chr4.1:48059715-48059734 None:intergenic 30.0%
!! AAAAGGAAATTTGATGATGC+TGG + chr4.1:48061671-48061690 MS.gene61601:CDS 30.0%
!! AGAAACATAAGCTTTGAAAG+TGG - chr4.1:48062610-48062629 None:intergenic 30.0%
!! CCTGAAAATTTGAGTATTGA+GGG - chr4.1:48060928-48060947 None:intergenic 30.0%
!! GTAGTCCAGAAAATTTTGAT+TGG - chr4.1:48063277-48063296 None:intergenic 30.0%
!! GTTTGATTTTCATTGGAACT+AGG - chr4.1:48059721-48059740 None:intergenic 30.0%
!!! CTGCATATTTTGATTTGCAA+TGG - chr4.1:48062703-48062722 None:intergenic 30.0%
!!! GGTTTTGATTAGGTATTTGA+GGG - chr4.1:48063256-48063275 None:intergenic 30.0%
!!! TGGTTTTGATTAGGTATTTG+AGG - chr4.1:48063257-48063276 None:intergenic 30.0%
AAAAAGAGAACTGAGAATGG+TGG + chr4.1:48061518-48061537 MS.gene61601:CDS 35.0%
AAAAAGAGACTTCAGAATGG+TGG + chr4.1:48061758-48061777 MS.gene61601:CDS 35.0%
AAAATGGTAGCTACTTAGCT+AGG + chr4.1:48062816-48062835 MS.gene61601:intron 35.0%
AAGTCAAGATCAGTTAGGAT+CGG + chr4.1:48061880-48061899 MS.gene61601:CDS 35.0%
AATCTCCAAATACTCCACAA+AGG + chr4.1:48063165-48063184 MS.gene61601:CDS 35.0%
ACCCACGTACACAAAAATAT+GGG + chr4.1:48060330-48060349 MS.gene61601:intron 35.0%
ACTTAGTCCCAACAAAAACA+TGG + chr4.1:48059670-48059689 MS.gene61601:CDS 35.0%
AGAGAAGAGAACTAAGAGTA+TGG + chr4.1:48060132-48060151 MS.gene61601:CDS 35.0%
AGAGCTTGAACAAACGAAAA+TGG + chr4.1:48061355-48061374 MS.gene61601:CDS 35.0%
AGGAATTTCCAAAACTCTGA+GGG - chr4.1:48063220-48063239 None:intergenic 35.0%
ATTGGCTACTGATAAGGTTA+AGG + chr4.1:48061574-48061593 MS.gene61601:CDS 35.0%
CAAGGTTGTTAGTATCATCA+GGG - chr4.1:48059643-48059662 None:intergenic 35.0%
CATGTTTGTGACTATGATCT+AGG - chr4.1:48062432-48062451 None:intergenic 35.0%
CCAAGGAAATTTATGGAACT+TGG + chr4.1:48061551-48061570 MS.gene61601:CDS 35.0%
CCAAGTTCCATAAATTTCCT+TGG - chr4.1:48061554-48061573 None:intergenic 35.0%
CGTAAGGGTAAGAAAGTTAA+AGG + chr4.1:48061464-48061483 MS.gene61601:CDS 35.0%
CTTGTTTCATGAGATGAGAT+TGG - chr4.1:48059748-48059767 None:intergenic 35.0%
GAGAAAAAGAGAACTGAGAA+TGG + chr4.1:48061515-48061534 MS.gene61601:CDS 35.0%
GATAGTCCTAAGTAAGAATG+AGG + chr4.1:48061934-48061953 MS.gene61601:CDS 35.0%
GATCTCACTATTACAATGCA+TGG + chr4.1:48061140-48061159 MS.gene61601:intron 35.0%
GCTGCTATTACATCCATTAT+TGG + chr4.1:48063410-48063429 MS.gene61601:CDS 35.0%
GGTATTGCCAATATTTGTGA+AGG - chr4.1:48063323-48063342 None:intergenic 35.0%
GTTCTCTTCTCTTCTGAATT+AGG - chr4.1:48060124-48060143 None:intergenic 35.0%
GTTGCAATACTTGAAGAACA+AGG - chr4.1:48063098-48063117 None:intergenic 35.0%
TATGGGCAAAAACTATCGAA+AGG + chr4.1:48062161-48062180 MS.gene61601:CDS 35.0%
TCAAGGTTGTTAGTATCATC+AGG - chr4.1:48059644-48059663 None:intergenic 35.0%
TCATGAAACAAGAACAGAGT+TGG + chr4.1:48059756-48059775 MS.gene61601:intron 35.0%
TCGACACTCTTTAGATTTGA+AGG + chr4.1:48060267-48060286 MS.gene61601:intron 35.0%
TCTAGAAGTCAAGATCAGTT+AGG + chr4.1:48061875-48061894 MS.gene61601:CDS 35.0%
TTAACGTGGTAGCATATCAT+TGG - chr4.1:48060688-48060707 None:intergenic 35.0%
TTATTGCATTCAGCAAATCC+AGG - chr4.1:48062786-48062805 None:intergenic 35.0%
TTTCAGATGGCTATTCTTCA+AGG + chr4.1:48061332-48061351 MS.gene61601:intron 35.0%
! CCCTCAATACTCAAATTTTC+AGG + chr4.1:48060925-48060944 MS.gene61601:intron 35.0%
! CCCTGAAAATTTGAGTATTG+AGG - chr4.1:48060929-48060948 None:intergenic 35.0%
! GATGTCAATGGAGAAAGTAT+GGG + chr4.1:48062144-48062163 MS.gene61601:CDS 35.0%
! GGGAAAGAGTTGTTATTAAC+TGG - chr4.1:48059623-48059642 None:intergenic 35.0%
! TAGCTAAGTAGCTACCATTT+TGG - chr4.1:48062817-48062836 None:intergenic 35.0%
! TCTAGATTTTCTCATTGACG+AGG - chr4.1:48061861-48061880 None:intergenic 35.0%
!! AAAGGAAAAGAAGTGTTCAC+TGG + chr4.1:48061722-48061741 MS.gene61601:CDS 35.0%
!! AATATTTGGACTAGCAGCAA+TGG - chr4.1:48063375-48063394 None:intergenic 35.0%
!! ATGTTTTATTCGAACGTGAG+AGG + chr4.1:48061262-48061281 MS.gene61601:intron 35.0%
!! CGATAATAAGCTTTAGGACA+CGG - chr4.1:48062191-48062210 None:intergenic 35.0%
!! GAAATTTGATGATGCTGGAT+TGG + chr4.1:48061676-48061695 MS.gene61601:CDS 35.0%
!! GATAATAAGCTTTAGGACAC+GGG - chr4.1:48062190-48062209 None:intergenic 35.0%
!! GATCAATCTATGATGGATGA+TGG + chr4.1:48060091-48060110 MS.gene61601:CDS 35.0%
!! GTAGCATCCATGTTTTTGTT+GGG - chr4.1:48059680-48059699 None:intergenic 35.0%
!! TCTTTAGATTTGAAGGTGTC+TGG + chr4.1:48060274-48060293 MS.gene61601:intron 35.0%
!! TGGAGAGGTTTGATTTTCAT+TGG - chr4.1:48059728-48059747 None:intergenic 35.0%
!! TGTAGCATCCATGTTTTTGT+TGG - chr4.1:48059681-48059700 None:intergenic 35.0%
!!! TTCTTTTTTCGCATACAGCT+TGG + chr4.1:48060037-48060056 MS.gene61601:intron 35.0%
AAACTTACATGCTTTCGGAC+TGG - chr4.1:48062236-48062255 None:intergenic 40.0%
AACTTACATGCTTTCGGACT+GGG - chr4.1:48062235-48062254 None:intergenic 40.0%
ACATGTGGCATCAACAATGA+TGG + chr4.1:48063557-48063576 MS.gene61601:CDS 40.0%
AGCTAGATCAGAAGAAACCA+TGG + chr4.1:48062012-48062031 MS.gene61601:CDS 40.0%
AGCTGACCCTTCACAAATAT+TGG + chr4.1:48063313-48063332 MS.gene61601:CDS 40.0%
ATATGATCATTGTCAGGGAC+AGG - chr4.1:48059829-48059848 None:intergenic 40.0%
ATGGTCGTTGTATCGAAGAT+TGG - chr4.1:48062741-48062760 None:intergenic 40.0%
CATGTGGCATCAACAATGAT+GGG + chr4.1:48063558-48063577 MS.gene61601:CDS 40.0%
CTGCAGCGATAATAAGCTTT+AGG - chr4.1:48062197-48062216 None:intergenic 40.0%
GACAAAGCTGCAGGAATATT+TGG - chr4.1:48063389-48063408 None:intergenic 40.0%
GACCCACGTACACAAAAATA+TGG + chr4.1:48060329-48060348 MS.gene61601:intron 40.0%
GAGGAATTTCCAAAACTCTG+AGG - chr4.1:48063221-48063240 None:intergenic 40.0%
GATTTGATATGCCTTGCACA+TGG + chr4.1:48062550-48062569 MS.gene61601:intron 40.0%
GCATCAACATCAAGCAATGA+TGG + chr4.1:48063035-48063054 MS.gene61601:CDS 40.0%
GGATCATATTGGTGCAATGA+CGG - chr4.1:48060953-48060972 None:intergenic 40.0%
GGATGTCAATGGAGAAAGTA+TGG + chr4.1:48062143-48062162 MS.gene61601:CDS 40.0%
GTACACAAAAATATGGGCCA+AGG + chr4.1:48060336-48060355 MS.gene61601:intron 40.0%
TATGATCATTGTCAGGGACA+GGG - chr4.1:48059828-48059847 None:intergenic 40.0%
TCACGTAATAAGCACATCGA+TGG - chr4.1:48062760-48062779 None:intergenic 40.0%
TGGCTGAGTATCACCAATAA+TGG - chr4.1:48063426-48063445 None:intergenic 40.0%
TGGGACTAAGTTTCAACTCA+AGG - chr4.1:48059661-48059680 None:intergenic 40.0%
TTAAAAGAAAGCGAGGACCT+TGG - chr4.1:48060356-48060375 None:intergenic 40.0%
TTACGCACCTAACACATCAA+TGG + chr4.1:48062677-48062696 MS.gene61601:intron 40.0%
TTCATGAGATGAGATTGGAG+AGG - chr4.1:48059743-48059762 None:intergenic 40.0%
TTGTTATCCAACCATGTGCA+AGG - chr4.1:48062564-48062583 None:intergenic 40.0%
! AGATCACTGATGGATGTCAA+TGG + chr4.1:48062132-48062151 MS.gene61601:intron 40.0%
! CCAAAACTCTGAGGGATTAA+AGG - chr4.1:48063212-48063231 None:intergenic 40.0%
! CCTTTAATCCCTCAGAGTTT+TGG + chr4.1:48063209-48063228 MS.gene61601:CDS 40.0%
! GAAGAGAACTAAGAGTATGG+AGG + chr4.1:48060135-48060154 MS.gene61601:CDS 40.0%
!! AACTGATTTGCGTTCCTTTG+TGG - chr4.1:48063182-48063201 None:intergenic 40.0%
!! ACTTGGATTGGCTACTGATA+AGG + chr4.1:48061568-48061587 MS.gene61601:CDS 40.0%
!! GCCCATATTTTTGTGTACGT+GGG - chr4.1:48060334-48060353 None:intergenic 40.0%
!! GCTACCATTGCTATTTCCTT+CGG - chr4.1:48063498-48063517 None:intergenic 40.0%
AATGGCAACAATGTCACCGA+AGG + chr4.1:48063479-48063498 MS.gene61601:CDS 45.0%
ACCTGCAGCAGCTAAAGAAA+TGG + chr4.1:48062974-48062993 MS.gene61601:CDS 45.0%
ACTGGGGCCAAGGAAATTTA+TGG + chr4.1:48061544-48061563 MS.gene61601:CDS 45.0%
AGAGTGATGCAAGACCGTAA+GGG + chr4.1:48061449-48061468 MS.gene61601:CDS 45.0%
CAATGTGTGACACCCATACA+GGG + chr4.1:48060303-48060322 MS.gene61601:intron 45.0%
CTTTAGCTGCTGCAGGTAAA+GGG - chr4.1:48062971-48062990 None:intergenic 45.0%
GCAATGGCCATTGATGTGTT+AGG - chr4.1:48062687-48062706 None:intergenic 45.0%
GGACAGAGACAACTTCATGA+TGG - chr4.1:48059807-48059826 None:intergenic 45.0%
GTCACCGAAGGAAATAGCAA+TGG + chr4.1:48063491-48063510 MS.gene61601:CDS 45.0%
GTGCTTATTACGTGAATGCC+TGG + chr4.1:48062765-48062784 MS.gene61601:intron 45.0%
TCAATGTGTGACACCCATAC+AGG + chr4.1:48060302-48060321 MS.gene61601:intron 45.0%
TCTTTAGCTGCTGCAGGTAA+AGG - chr4.1:48062972-48062991 None:intergenic 45.0%
TGATATGCCTTGCACATGGT+TGG + chr4.1:48062554-48062573 MS.gene61601:intron 45.0%
TGATGGGAAGGAACGAAATC+AGG + chr4.1:48063574-48063593 MS.gene61601:CDS 45.0%
! AACTGAGAATGGTGGAGTAC+TGG + chr4.1:48061526-48061545 MS.gene61601:CDS 45.0%
! ACTGAGAATGGTGGAGTACT+GGG + chr4.1:48061527-48061546 MS.gene61601:CDS 45.0%
! ACTTCAGAATGGTGGAGAGT+TGG + chr4.1:48061766-48061785 MS.gene61601:CDS 45.0%
! GCGTTCCTTTGTGGAGTATT+TGG - chr4.1:48063173-48063192 None:intergenic 45.0%
! TATGGGTGTCACACATTGAC+AGG - chr4.1:48060301-48060320 None:intergenic 45.0%
! TGGCATCAACAATGATGGGA+AGG + chr4.1:48063562-48063581 MS.gene61601:CDS 45.0%
!! GGCCCATATTTTTGTGTACG+TGG - chr4.1:48060335-48060354 None:intergenic 45.0%
!! GTTGGTGTCAAGGCAATGTA+AGG + chr4.1:48061784-48061803 MS.gene61601:CDS 45.0%
!! TGCTGGATTGGCTACTGATA+AGG + chr4.1:48061688-48061707 MS.gene61601:CDS 45.0%
!!! TTTTATATTTTTCTTTTATT+TGG + chr4.1:48060827-48060846 MS.gene61601:intron 5.0%
ATAGCAGCTGACAAAGCTGC+AGG - chr4.1:48063398-48063417 None:intergenic 50.0%
GAGAGTGATGCAAGACCGTA+AGG + chr4.1:48061448-48061467 MS.gene61601:CDS 50.0%
GCAGAAATGCACGACTCTCA+TGG - chr4.1:48060575-48060594 None:intergenic 50.0%
GCCATTTCTTTAGCTGCTGC+AGG - chr4.1:48062978-48062997 None:intergenic 50.0%
TTGAGGGATCAGAGAAGCTG+AGG - chr4.1:48063240-48063259 None:intergenic 50.0%
! GCAGCAGCAGTGTTGTTGTT+TGG - chr4.1:48063446-48063465 None:intergenic 50.0%
!! ATGGTGGAGAGTTGGTGTCA+AGG + chr4.1:48061774-48061793 MS.gene61601:CDS 50.0%
!! CTGAGAATGGTGGAGTACTG+GGG + chr4.1:48061528-48061547 MS.gene61601:CDS 50.0%
ACGTGGGTCTGTCCCTGTAT+GGG - chr4.1:48060318-48060337 None:intergenic 55.0%
TACGTGGGTCTGTCCCTGTA+TGG - chr4.1:48060319-48060338 None:intergenic 55.0%
TAGCTGCTGCAGGTAAAGGG+TGG - chr4.1:48062968-48062987 None:intergenic 55.0%
! CTTTCGGACTGGGCAACCAT+GGG - chr4.1:48062225-48062244 None:intergenic 55.0%
TATCGCTGCAGCACGACCCA+TGG + chr4.1:48062206-48062225 MS.gene61601:CDS 60.0%
! GCTTTCGGACTGGGCAACCA+TGG - chr4.1:48062226-48062245 None:intergenic 60.0%
!! ATGGTGGAGTACTGGGGCCA+AGG + chr4.1:48061534-48061553 MS.gene61601:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 48059608 48063646 48059608 ID=MS.gene61601
chr4.1 mRNA 48059608 48063646 48059608 ID=MS.gene61601.t1;Parent=MS.gene61601
chr4.1 exon 48059608 48059704 48059608 ID=MS.gene61601.t1.exon1;Parent=MS.gene61601.t1
chr4.1 CDS 48059608 48059704 48059608 ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1 exon 48059773 48059888 48059773 ID=MS.gene61601.t1.exon2;Parent=MS.gene61601.t1
chr4.1 CDS 48059773 48059888 48059773 ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1 exon 48060055 48060156 48060055 ID=MS.gene61601.t1.exon3;Parent=MS.gene61601.t1
chr4.1 CDS 48060055 48060156 48060055 ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1 exon 48061338 48062033 48061338 ID=MS.gene61601.t1.exon4;Parent=MS.gene61601.t1
chr4.1 CDS 48061338 48062033 48061338 ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1 exon 48062134 48062247 48062134 ID=MS.gene61601.t1.exon5;Parent=MS.gene61601.t1
chr4.1 CDS 48062134 48062247 48062134 ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1 exon 48062906 48063646 48062906 ID=MS.gene61601.t1.exon6;Parent=MS.gene61601.t1
chr4.1 CDS 48062906 48063646 48062906 ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
Gene Sequence

>MS.gene61601

ATGGCTTCAGTTCCAGTTAATAACAACTCTTTCCCTGATGATACTAACAACCTTGAGTTGAAACTTAGTCCCAACAAAAACATGGATGCTACACATAGTACTATCCCTTTCCTAGTTCCAATGAAAATCAAACCTCTCCAATCTCATCTCATGAAACAAGAACAGAGTTGGATTTCTTTGATGACAACAACAATGACCATCATGAAGTTGTCTCTGTCCCTGTCCCTGACAATGATCATATTCATACTGTTACACCATCTTTATTGGAACTAAAGCTAAGCGTGAGTGACCATAATTCAATATCCCATTGTTATTATTTTTTTTACGTATTATATTATATATATTGTTTTTAAATTTCATAGCTTTTGAATCTGTAATCGCAAAAAAAAACATTTATTTTTTATGATTATCTTTTTAATTTGATGAATATTCTTTTTTCGCATACAGCTTGGTCCCATTCCTATTACTATCAATACTAGTAGTGATCAATCTATGATGGATGATGGCATGTCACCTAATTCAGAAGAGAAGAGAACTAAGAGTATGGAGGTAATGTTATTTTTATCAAGACCTAGCAGAATTTAATGAAATTATATATGATGAACATTTTTTTTCCTTTAATTTTATTGAGTCAAAACTGGGTGATTTTATATATTGCATCGACACTCTTTAGATTTGAAGGTGTCTGGACCTGTCAATGTGTGACACCCATACAGGGACAGACCCACGTACACAAAAATATGGGCCAAGGTCCTCGCTTTCTTTTAAATTTTTTCTACTATGTTATTCTTTTTGGAAAGGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTCTTGGTTGGTTTGGCTTGTTAGTTTTTGTCTCTTACTCTTATATGACCTACATTTATAAGTATAATACAATATAATGTTATATGCAACCATGAGAGTCGTGCATTTCTGCTCTTTATTTCAACCACAACTAATAATTATGTTATATTGAGTTAATTTAACTAGTATATTTTGTCAACGTACAATTATTTTATACATGCATCCAATGATATGCTACCACGTTAATTAATGAATATGACAACTCATGTGTTTTCATATTTATTAATTGATGTAGCAGCACATCATTGAATGAATGTGTAAAATAATTGTACACCGACATAGTACGCTAATTAAATTCTTTCATATTTTATATTTTTCTTTTATTTGGTTTCATTTTTTAAAAGATACTAGTTTAATATTTTAACTGTAAATTGAATTTATTTACTCATTATTTTAAATGCTGCCCTCAATACTCAAATTTTCAGGGTCCGTCATTGCACCAATATGATCCTGACATAAACTGTTACATTTTGTTGTTTTATTTTCTCAAATTATTATTGGTTGTTGACGTGTCAGTTTTAATGTTTTGTCCGATTTTATATGTATGTCAGTGTTTATAGAATATTTTTGTGATTTGAATCCTCTTCTTTGTGAAAAAAATTACTGAGTTATGTTAATGATCTCACTATTACAATGCATGGCCTTTTAGAACACTATTAACATGATGGGGTCCAATGTATTTTGATTTTGTTGGATAATCGAATGCAATTTAATAGTGAAATGATTATTATAACCCTAACATGTTTTATTCGAACGTGAGAGGATCCAAATCCGTTTTTTATGTGATTATATTTGAGTTCATTGAACTATTTTCAGATGGCTATTCTTCAAGGAGAGCTTGAACAAACGAAAATGGAGAACTGTAGACTAAAATTGATGTATGATCTGCTTAGAATATATTACAATTACATGCGGAAGCGTTTCGAGAGAGTGATGCAAGACCGTAAGGGTAAGAAAGTTAAAGGAAAAAAAGTCTTTGATGGAAAATTTAAAGAGAAAAAGAGAACTGAGAATGGTGGAGTACTGGGGCCAAGGAAATTTATGGAACTTGGATTGGCTACTGATAAGGTTAAGGAAGTTAAAGGACAAAAAGTTTCTGATCAAAAATTTGTAGAGAAAATGAGAATTAAGAATGATGGAGAATTAATGAAAAGGAAATTTGATGATGCTGGATTGGCTACTGATAAGGTTAAGGAAGTTAAAGGAAAAGAAGTGTTCACTGGAAAATGTGAAAAGAAAAAGAGACTTCAGAATGGTGGAGAGTTGGTGTCAAGGCAATGTAAGGATCTCGTGTTGATTACAAATGCTGATATTGTGATGGATCACGAAGCTTCGTCCTCGTCAATGAGAAAATCTAGAAGTCAAGATCAGTTAGGATCGGCGATGAAAAACATCGATGTTGCTTCGAATGAGATAGTCCTAAGTAAGAATGAGGATGTTAATGTTGATAATGTTGAGGATTCATTGACAAAAGCAAGAGTTTGTATTAGAGCTAGATCAGAAGAAACCATGGTAAGTATGTAAAAGTGTATATTAACTTTCAACTTTGCAAGTTTTTATATCATAATTTATTGTCCTTTTTACTAAAAAGAATTAATTTTTATTGAGTTAGATCACTGATGGATGTCAATGGAGAAAGTATGGGCAAAAACTATCGAAAGGAAACCCGTGTCCTAAAGCTTATTATCGCTGCAGCACGACCCATGGTTGCCCAGTCCGAAAGCATGTAAGTTTCTTCTGTAAATATCCAAATTACATGTATTTACTAAAGTTTTAAATTTATGTCGCCCTATTGATTGCTTTCGCATTATTATATTTAATAGTATTATAGAGAATTATAGTCAAATATGATTAATGCAACGTCAATAACATTAAATTCACAACGACATTAAACTCTTTGATTGTTGCCTAGATCATAGTCACAAACATGCATATTTTAAAACATTGGTCTTTAAATCATTATTTTATGTATGTTTTCAATTAATTAAAAATTAACTCCACATACAGAAACATTTTTAGTAATTGATTGATTTGATATGCCTTGCACATGGTTGGATAACAATATAATTTAATTGAAATTTGTTTCCACTTTCAAAGCTTATGTTTCTATGCTAGAAAATGGATTTGTATTTGCTCCATTCAGCAATCTATGTATTTACGCACCTAACACATCAATGGCCATTGCAAATCAAAATATGCAGTTATGTTTGGATCATCCAATCTTCGATACAACGACCATCGATGTGCTTATTACGTGAATGCCTGGATTTGCTGAATGCAATAAACTCAAATCCAAAATGGTAGCTACTTAGCTAGGTTAATTAAATTACTTATGAAGTGGTCTGTAATGTAATGACATATTTAATACAATTAAAACTTAACAGGTACAAAGGTGTGCTTTTGACAAAATAGTTGTAATCACAACTTATGAAGGAAATCACAACCACCCTTTACCTGCAGCAGCTAAAGAAATGGCAAAAACAACTTCAGCAGTTGCAAAGATACTTCTTTCAGCATCAACATCAAGCAATGATGGACAATTAAATGCAAATTTACTCACAAGAACACTTCTTCCTTGTTCTTCAAGTATTGCAACTATATCAGCTTCTGCTCCATATCCAACTATTACAATTGATTACACTCAATCTCCAAATACTCCACAAAGGAACGCAAATCAGTTTCAAACTCCTTTAATCCCTCAGAGTTTTGGAAATTCCTCAGCTTCTCTGATCCCTCAAATACCTAATCAAAACCAATCAAAATTTTCTGGACTACATATGTCGAAAGATGCAGCTGACCCTTCACAAATATTGGCAATACCAAATATTACTGCTCAAACAGTTAATGCTGCCATTGCTGCTAGTCCAAATATTCCTGCAGCTTTGTCAGCTGCTATTACATCCATTATTGGTGATACTCAGCCAAACAACAACACTGCTGCTGCTGATAATAATAATAATGGCAACAATGTCACCGAAGGAAATAGCAATGGTAGCAACAATAATGTCACAGAAGCCAATAGCAACAAAATTATCACATGTGGCATCAACAATGATGGGAAGGAACGAAATCAGGAATACCAATTACAAGACCTAAACTTTAATTTTTTTTGCTCAAAGATTTAG
Protein sequence

>MS.gene61601.t1

MASVPVNNNSFPDDTNNLELKLSPNKNMDATHKLDFFDDNNNDHHEVVSVPVPDNDHIHTVTPSLLELKLSLGPIPITINTSSDQSMMDDGMSPNSEEKRTKSMEMAILQGELEQTKMENCRLKLMYDLLRIYYNYMRKRFERVMQDRKGKKVKGKKVFDGKFKEKKRTENGGVLGPRKFMELGLATDKVKEVKGQKVSDQKFVEKMRIKNDGELMKRKFDDAGLATDKVKEVKGKEVFTGKCEKKKRLQNGGELVSRQCKDLVLITNADIVMDHEASSSSMRKSRSQDQLGSAMKNIDVASNEIVLSKNEDVNVDNVEDSLTKARVCIRARSEETMITDGCQWRKYGQKLSKGNPCPKAYYRCSTTHGCPVRKHVQRCAFDKIVVITTYEGNHNHPLPAAAKEMAKTTSAVAKILLSASTSSNDGQLNANLLTRTLLPCSSSIATISASAPYPTITIDYTQSPNTPQRNANQFQTPLIPQSFGNSSASLIPQIPNQNQSKFSGLHMSKDAADPSQILAIPNITAQTVNAAIAASPNIPAALSAAITSIIGDTQPNNNTAAADNNNNGNNVTEGNSNGSNNNVTEANSNKIITCGINNDGKERNQEYQLQDLNFNFFCSKI