AlfalfaGEDB | MS.gene61601

M. sativa cultivar XinJiangDaYe / MS.gene61601

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61601.t1	XP_024636301.1	82	583	61	4	1	556	1	566	5.50E-170	607.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61601.t1	Q9XEC3	54.6	227	87	6	319	537	272	490	3.6e-53	211.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61601.t1	A0A396I431	82.0	583	61	4	1	556	1	566	4.0e-170	607.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene61601.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61601.t1	MTR_4g049790	68.362	629	106	6	1	602	1	563	0.0	750
MS.gene61601.t1	MTR_4g047580	66.491	570	132	7	33	602	30	540	0.0	682
MS.gene61601.t1	MTR_4g049760	67.695	551	125	5	23	573	25	522	0.0	643
MS.gene61601.t1	MTR_2g088000	43.038	553	219	18	44	579	118	591	1.03e-108	340
MS.gene61601.t1	MTR_2g023930	36.216	555	231	15	31	551	65	530	4.80e-81	266
MS.gene61601.t1	MTR_4g132430	57.018	228	84	6	317	538	105	324	4.68e-73	239
MS.gene61601.t1	MTR_4g132430	57.018	228	84	6	317	538	239	458	3.08e-72	241
MS.gene61601.t1	MTR_3g053330	47.479	238	95	5	319	550	231	444	7.18e-63	215
MS.gene61601.t1	MTR_7g110720	46.245	253	102	6	324	575	174	393	2.06e-56	196
MS.gene61601.t1	MTR_7g110720	46.245	253	102	6	324	575	201	420	2.54e-56	197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61601.t1	AT4G04450	41.463	492	197	15	77	550	85	503	2.27e-84	274
MS.gene61601.t1	AT4G04450	41.079	482	193	15	87	550	1	409	1.08e-80	261
MS.gene61601.t1	AT1G62300	50.562	267	109	8	318	566	291	552	1.16e-66	228
MS.gene61601.t1	AT4G22070	54.400	250	86	6	318	550	276	514	5.08e-61	212
MS.gene61601.t1	AT4G22070	54.400	250	86	6	318	550	276	514	5.08e-61	212
MS.gene61601.t1	AT4G22070	54.400	250	86	6	318	550	276	514	5.08e-61	212
MS.gene61601.t1	AT4G22070	54.400	250	86	6	318	550	276	514	5.08e-61	212
MS.gene61601.t1	AT4G01720	42.712	295	128	8	273	547	170	443	8.08e-47	172
MS.gene61601.t1	AT5G15130	36.531	271	121	7	319	551	165	422	5.28e-38	147
MS.gene61601.t1	AT5G15130	36.531	271	121	7	319	551	207	464	5.64e-38	148

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Find 108 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAATTTGATGATGC+TGG	0.391734	4.1:+48061671	MS.gene61601:CDS
AAAATGAGAATTAAGAATGA+TGG	0.434196	4.1:+48061638	MS.gene61601:CDS
AAACTTACATGCTTTCGGAC+TGG	0.512195	4.1:-48062233	None:intergenic
AAAGGAAAAGAAGTGTTCAC+TGG	0.557236	4.1:+48061722	MS.gene61601:CDS
AACTGAGAATGGTGGAGTAC+TGG	0.377375	4.1:+48061526	MS.gene61601:CDS
AACTGATTTGCGTTCCTTTG+TGG	0.385254	4.1:-48063179	None:intergenic
AACTTACATGCTTTCGGACT+GGG	0.430854	4.1:-48062232	None:intergenic
AAGTCAAGATCAGTTAGGAT+CGG	0.620379	4.1:+48061880	MS.gene61601:CDS
AATATTTGGACTAGCAGCAA+TGG	0.612014	4.1:-48063372	None:intergenic
AATCTCCAAATACTCCACAA+AGG	0.678231	4.1:+48063165	MS.gene61601:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAAAGAGACTTCAGAA+TGG	+	chr4.1:48061755-48061774	MS.gene61601:CDS	30.0%
ACGTTCGAATAAAACATGTT+AGG	-	chr4.1:48061259-48061278	None:intergenic	30.0%
ACTGTTTGAGCAGTAATATT+TGG	-	chr4.1:48063344-48063363	None:intergenic	30.0%
AGAACACTATTAACATGATG+GGG	+	chr4.1:48061169-48061188	MS.gene61601:intron	30.0%
AGAAGAAACTTACATGCTTT+CGG	-	chr4.1:48062241-48062260	None:intergenic	30.0%
AGCAACAAAATTATCACATG+TGG	+	chr4.1:48063542-48063561	MS.gene61601:CDS	30.0%
AGTTTATGTCAGGATCATAT+TGG	-	chr4.1:48060964-48060983	None:intergenic	30.0%
ATAATGCGAAAGCAATCAAT+AGG	-	chr4.1:48062313-48062332	None:intergenic	30.0%
CGTTCGAATAAAACATGTTA+GGG	-	chr4.1:48061258-48061277	None:intergenic	30.0%
GAAATTTATGGAACTTGGAT+TGG	+	chr4.1:48061556-48061575	MS.gene61601:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	48059608	48063646	48059608	ID=MS.gene61601
chr4.1	mRNA	48059608	48063646	48059608	ID=MS.gene61601.t1;Parent=MS.gene61601
chr4.1	exon	48059608	48059704	48059608	ID=MS.gene61601.t1.exon1;Parent=MS.gene61601.t1
chr4.1	CDS	48059608	48059704	48059608	ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1	exon	48059773	48059888	48059773	ID=MS.gene61601.t1.exon2;Parent=MS.gene61601.t1
chr4.1	CDS	48059773	48059888	48059773	ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1	exon	48060055	48060156	48060055	ID=MS.gene61601.t1.exon3;Parent=MS.gene61601.t1
chr4.1	CDS	48060055	48060156	48060055	ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1	exon	48061338	48062033	48061338	ID=MS.gene61601.t1.exon4;Parent=MS.gene61601.t1
chr4.1	CDS	48061338	48062033	48061338	ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1	exon	48062134	48062247	48062134	ID=MS.gene61601.t1.exon5;Parent=MS.gene61601.t1
chr4.1	CDS	48062134	48062247	48062134	ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1
chr4.1	exon	48062906	48063646	48062906	ID=MS.gene61601.t1.exon6;Parent=MS.gene61601.t1
chr4.1	CDS	48062906	48063646	48062906	ID=cds.MS.gene61601.t1;Parent=MS.gene61601.t1

Gene Sequence

>MS.gene61601

ATGGCTTCAGTTCCAGTTAATAACAACTCTTTCCCTGATGATACTAACAACCTTGAGTTGAAACTTAGTCCCAACAAAAACATGGATGCTACACATAGTACTATCCCTTTCCTAGTTCCAATGAAAATCAAACCTCTCCAATCTCATCTCATGAAACAAGAACAGAGTTGGATTTCTTTGATGACAACAACAATGACCATCATGAAGTTGTCTCTGTCCCTGTCCCTGACAATGATCATATTCATACTGTTACACCATCTTTATTGGAACTAAAGCTAAGCGTGAGTGACCATAATTCAATATCCCATTGTTATTATTTTTTTTACGTATTATATTATATATATTGTTTTTAAATTTCATAGCTTTTGAATCTGTAATCGCAAAAAAAAACATTTATTTTTTATGATTATCTTTTTAATTTGATGAATATTCTTTTTTCGCATACAGCTTGGTCCCATTCCTATTACTATCAATACTAGTAGTGATCAATCTATGATGGATGATGGCATGTCACCTAATTCAGAAGAGAAGAGAACTAAGAGTATGGAGGTAATGTTATTTTTATCAAGACCTAGCAGAATTTAATGAAATTATATATGATGAACATTTTTTTTCCTTTAATTTTATTGAGTCAAAACTGGGTGATTTTATATATTGCATCGACACTCTTTAGATTTGAAGGTGTCTGGACCTGTCAATGTGTGACACCCATACAGGGACAGACCCACGTACACAAAAATATGGGCCAAGGTCCTCGCTTTCTTTTAAATTTTTTCTACTATGTTATTCTTTTTGGAAAGGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTCTTGGTTGGTTTGGCTTGTTAGTTTTTGTCTCTTACTCTTATATGACCTACATTTATAAGTATAATACAATATAATGTTATATGCAACCATGAGAGTCGTGCATTTCTGCTCTTTATTTCAACCACAACTAATAATTATGTTATATTGAGTTAATTTAACTAGTATATTTTGTCAACGTACAATTATTTTATACATGCATCCAATGATATGCTACCACGTTAATTAATGAATATGACAACTCATGTGTTTTCATATTTATTAATTGATGTAGCAGCACATCATTGAATGAATGTGTAAAATAATTGTACACCGACATAGTACGCTAATTAAATTCTTTCATATTTTATATTTTTCTTTTATTTGGTTTCATTTTTTAAAAGATACTAGTTTAATATTTTAACTGTAAATTGAATTTATTTACTCATTATTTTAAATGCTGCCCTCAATACTCAAATTTTCAGGGTCCGTCATTGCACCAATATGATCCTGACATAAACTGTTACATTTTGTTGTTTTATTTTCTCAAATTATTATTGGTTGTTGACGTGTCAGTTTTAATGTTTTGTCCGATTTTATATGTATGTCAGTGTTTATAGAATATTTTTGTGATTTGAATCCTCTTCTTTGTGAAAAAAATTACTGAGTTATGTTAATGATCTCACTATTACAATGCATGGCCTTTTAGAACACTATTAACATGATGGGGTCCAATGTATTTTGATTTTGTTGGATAATCGAATGCAATTTAATAGTGAAATGATTATTATAACCCTAACATGTTTTATTCGAACGTGAGAGGATCCAAATCCGTTTTTTATGTGATTATATTTGAGTTCATTGAACTATTTTCAGATGGCTATTCTTCAAGGAGAGCTTGAACAAACGAAAATGGAGAACTGTAGACTAAAATTGATGTATGATCTGCTTAGAATATATTACAATTACATGCGGAAGCGTTTCGAGAGAGTGATGCAAGACCGTAAGGGTAAGAAAGTTAAAGGAAAAAAAGTCTTTGATGGAAAATTTAAAGAGAAAAAGAGAACTGAGAATGGTGGAGTACTGGGGCCAAGGAAATTTATGGAACTTGGATTGGCTACTGATAAGGTTAAGGAAGTTAAAGGACAAAAAGTTTCTGATCAAAAATTTGTAGAGAAAATGAGAATTAAGAATGATGGAGAATTAATGAAAAGGAAATTTGATGATGCTGGATTGGCTACTGATAAGGTTAAGGAAGTTAAAGGAAAAGAAGTGTTCACTGGAAAATGTGAAAAGAAAAAGAGACTTCAGAATGGTGGAGAGTTGGTGTCAAGGCAATGTAAGGATCTCGTGTTGATTACAAATGCTGATATTGTGATGGATCACGAAGCTTCGTCCTCGTCAATGAGAAAATCTAGAAGTCAAGATCAGTTAGGATCGGCGATGAAAAACATCGATGTTGCTTCGAATGAGATAGTCCTAAGTAAGAATGAGGATGTTAATGTTGATAATGTTGAGGATTCATTGACAAAAGCAAGAGTTTGTATTAGAGCTAGATCAGAAGAAACCATGGTAAGTATGTAAAAGTGTATATTAACTTTCAACTTTGCAAGTTTTTATATCATAATTTATTGTCCTTTTTACTAAAAAGAATTAATTTTTATTGAGTTAGATCACTGATGGATGTCAATGGAGAAAGTATGGGCAAAAACTATCGAAAGGAAACCCGTGTCCTAAAGCTTATTATCGCTGCAGCACGACCCATGGTTGCCCAGTCCGAAAGCATGTAAGTTTCTTCTGTAAATATCCAAATTACATGTATTTACTAAAGTTTTAAATTTATGTCGCCCTATTGATTGCTTTCGCATTATTATATTTAATAGTATTATAGAGAATTATAGTCAAATATGATTAATGCAACGTCAATAACATTAAATTCACAACGACATTAAACTCTTTGATTGTTGCCTAGATCATAGTCACAAACATGCATATTTTAAAACATTGGTCTTTAAATCATTATTTTATGTATGTTTTCAATTAATTAAAAATTAACTCCACATACAGAAACATTTTTAGTAATTGATTGATTTGATATGCCTTGCACATGGTTGGATAACAATATAATTTAATTGAAATTTGTTTCCACTTTCAAAGCTTATGTTTCTATGCTAGAAAATGGATTTGTATTTGCTCCATTCAGCAATCTATGTATTTACGCACCTAACACATCAATGGCCATTGCAAATCAAAATATGCAGTTATGTTTGGATCATCCAATCTTCGATACAACGACCATCGATGTGCTTATTACGTGAATGCCTGGATTTGCTGAATGCAATAAACTCAAATCCAAAATGGTAGCTACTTAGCTAGGTTAATTAAATTACTTATGAAGTGGTCTGTAATGTAATGACATATTTAATACAATTAAAACTTAACAGGTACAAAGGTGTGCTTTTGACAAAATAGTTGTAATCACAACTTATGAAGGAAATCACAACCACCCTTTACCTGCAGCAGCTAAAGAAATGGCAAAAACAACTTCAGCAGTTGCAAAGATACTTCTTTCAGCATCAACATCAAGCAATGATGGACAATTAAATGCAAATTTACTCACAAGAACACTTCTTCCTTGTTCTTCAAGTATTGCAACTATATCAGCTTCTGCTCCATATCCAACTATTACAATTGATTACACTCAATCTCCAAATACTCCACAAAGGAACGCAAATCAGTTTCAAACTCCTTTAATCCCTCAGAGTTTTGGAAATTCCTCAGCTTCTCTGATCCCTCAAATACCTAATCAAAACCAATCAAAATTTTCTGGACTACATATGTCGAAAGATGCAGCTGACCCTTCACAAATATTGGCAATACCAAATATTACTGCTCAAACAGTTAATGCTGCCATTGCTGCTAGTCCAAATATTCCTGCAGCTTTGTCAGCTGCTATTACATCCATTATTGGTGATACTCAGCCAAACAACAACACTGCTGCTGCTGATAATAATAATAATGGCAACAATGTCACCGAAGGAAATAGCAATGGTAGCAACAATAATGTCACAGAAGCCAATAGCAACAAAATTATCACATGTGGCATCAACAATGATGGGAAGGAACGAAATCAGGAATACCAATTACAAGACCTAAACTTTAATTTTTTTTGCTCAAAGATTTAG

Protein sequence

>MS.gene61601.t1

MASVPVNNNSFPDDTNNLELKLSPNKNMDATHKLDFFDDNNNDHHEVVSVPVPDNDHIHTVTPSLLELKLSLGPIPITINTSSDQSMMDDGMSPNSEEKRTKSMEMAILQGELEQTKMENCRLKLMYDLLRIYYNYMRKRFERVMQDRKGKKVKGKKVFDGKFKEKKRTENGGVLGPRKFMELGLATDKVKEVKGQKVSDQKFVEKMRIKNDGELMKRKFDDAGLATDKVKEVKGKEVFTGKCEKKKRLQNGGELVSRQCKDLVLITNADIVMDHEASSSSMRKSRSQDQLGSAMKNIDVASNEIVLSKNEDVNVDNVEDSLTKARVCIRARSEETMITDGCQWRKYGQKLSKGNPCPKAYYRCSTTHGCPVRKHVQRCAFDKIVVITTYEGNHNHPLPAAAKEMAKTTSAVAKILLSASTSSNDGQLNANLLTRTLLPCSSSIATISASAPYPTITIDYTQSPNTPQRNANQFQTPLIPQSFGNSSASLIPQIPNQNQSKFSGLHMSKDAADPSQILAIPNITAQTVNAAIAASPNIPAALSAAITSIIGDTQPNNNTAAADNNNNGNNVTEGNSNGSNNNVTEANSNKIITCGINNDGKERNQEYQLQDLNFNFFCSKI