Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61654.t1 | XP_013455733.1 | 86.8 | 235 | 30 | 1 | 1 | 235 | 1 | 234 | 3.70E-103 | 384.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61654.t1 | Q4PSU4 | 30.6 | 170 | 99 | 3 | 1 | 154 | 55 | 221 | 1.9e-10 | 67.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61654.t1 | A0A072UJ33 | 86.8 | 235 | 30 | 1 | 1 | 235 | 1 | 234 | 2.7e-103 | 384.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene61654.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61654.t1 | MTR_4g051538 | 89.787 | 235 | 23 | 1 | 1 | 235 | 1 | 234 | 1.34e-144 | 403 |
| MS.gene61654.t1 | MTR_3g104630 | 51.969 | 127 | 49 | 3 | 106 | 220 | 16 | 142 | 4.45e-31 | 112 |
| MS.gene61654.t1 | MTR_5g053390 | 28.634 | 227 | 111 | 8 | 1 | 205 | 1 | 198 | 6.30e-17 | 77.4 |
| MS.gene61654.t1 | MTR_1g105920 | 31.098 | 164 | 96 | 4 | 1 | 150 | 1 | 161 | 1.31e-16 | 76.6 |
| MS.gene61654.t1 | MTR_3g080940 | 44.706 | 85 | 46 | 1 | 1 | 85 | 1 | 84 | 2.67e-16 | 75.1 |
| MS.gene61654.t1 | MTR_1g108510 | 30.323 | 155 | 96 | 4 | 1 | 143 | 1 | 155 | 2.78e-16 | 75.5 |
| MS.gene61654.t1 | MTR_8g086290 | 31.410 | 156 | 99 | 2 | 4 | 151 | 7 | 162 | 4.95e-16 | 73.6 |
| MS.gene61654.t1 | MTR_3g030770 | 30.323 | 155 | 96 | 4 | 1 | 143 | 1 | 155 | 5.68e-16 | 74.7 |
| MS.gene61654.t1 | MTR_1g012570 | 28.866 | 194 | 115 | 7 | 1 | 182 | 1 | 183 | 7.38e-16 | 74.3 |
| MS.gene61654.t1 | MTR_1g105910 | 32.609 | 138 | 78 | 3 | 1 | 126 | 1 | 135 | 8.94e-16 | 74.3 |
| MS.gene61654.t1 | MTR_2g030740 | 33.333 | 135 | 81 | 3 | 1 | 126 | 1 | 135 | 1.33e-15 | 73.9 |
| MS.gene61654.t1 | MTR_1g077360 | 40.244 | 82 | 49 | 0 | 1 | 82 | 1 | 82 | 1.74e-15 | 73.6 |
| MS.gene61654.t1 | MTR_3g052920 | 32.653 | 147 | 89 | 2 | 1 | 137 | 1 | 147 | 1.85e-15 | 73.2 |
| MS.gene61654.t1 | MTR_8g043650 | 31.852 | 135 | 83 | 3 | 1 | 126 | 1 | 135 | 2.16e-15 | 73.2 |
| MS.gene61654.t1 | MTR_1g106070 | 31.707 | 164 | 101 | 5 | 1 | 153 | 1 | 164 | 2.61e-15 | 72.0 |
| MS.gene61654.t1 | MTR_3g052870 | 40.244 | 82 | 49 | 0 | 1 | 82 | 1 | 82 | 4.18e-15 | 72.0 |
| MS.gene61654.t1 | MTR_2g085250 | 29.710 | 138 | 88 | 3 | 1 | 129 | 1 | 138 | 4.94e-15 | 72.0 |
| MS.gene61654.t1 | MTR_1g108580 | 43.056 | 72 | 41 | 0 | 1 | 72 | 1 | 72 | 5.14e-15 | 72.0 |
| MS.gene61654.t1 | MTR_2g085280 | 29.710 | 138 | 88 | 3 | 1 | 129 | 1 | 138 | 5.30e-15 | 72.0 |
| MS.gene61654.t1 | MTR_2g105290 | 29.747 | 158 | 99 | 4 | 4 | 151 | 7 | 162 | 5.92e-15 | 70.9 |
| MS.gene61654.t1 | MTR_5g055100 | 26.786 | 168 | 103 | 4 | 1 | 156 | 1 | 160 | 1.06e-14 | 71.2 |
| MS.gene61654.t1 | MTR_5g045560 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 4.99e-14 | 69.3 |
| MS.gene61654.t1 | MTR_2g093190 | 29.747 | 158 | 93 | 5 | 1 | 143 | 1 | 155 | 5.56e-14 | 69.3 |
| MS.gene61654.t1 | MTR_1g075600 | 27.919 | 197 | 113 | 5 | 1 | 182 | 1 | 183 | 1.35e-13 | 68.2 |
| MS.gene61654.t1 | MTR_0121s0100 | 30.579 | 121 | 75 | 2 | 1 | 115 | 1 | 118 | 1.74e-13 | 65.9 |
| MS.gene61654.t1 | MTR_4g094638 | 39.130 | 69 | 42 | 0 | 9 | 77 | 2 | 70 | 1.92e-13 | 66.6 |
| MS.gene61654.t1 | MTR_4g094632 | 36.145 | 83 | 53 | 0 | 9 | 91 | 2 | 84 | 2.63e-13 | 65.9 |
| MS.gene61654.t1 | MTR_3g030780 | 37.500 | 72 | 45 | 0 | 1 | 72 | 1 | 72 | 1.08e-12 | 63.5 |
| MS.gene61654.t1 | MTR_0121s0080 | 25.904 | 166 | 106 | 4 | 1 | 152 | 1 | 163 | 2.71e-12 | 64.7 |
| MS.gene61654.t1 | MTR_8g046350 | 28.947 | 114 | 68 | 2 | 9 | 116 | 2 | 108 | 1.36e-11 | 61.2 |
| MS.gene61654.t1 | MTR_8g079502 | 33.750 | 80 | 52 | 1 | 9 | 87 | 2 | 81 | 7.28e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61654.t1 | AT4G36590 | 50.000 | 68 | 34 | 0 | 5 | 72 | 3 | 70 | 1.68e-17 | 79.3 |
| MS.gene61654.t1 | AT1G29962 | 46.250 | 80 | 42 | 1 | 1 | 80 | 1 | 79 | 1.51e-16 | 75.5 |
| MS.gene61654.t1 | AT2G34440 | 35.659 | 129 | 75 | 4 | 9 | 130 | 2 | 129 | 4.04e-16 | 73.9 |
| MS.gene61654.t1 | AT2G24840 | 43.750 | 80 | 45 | 0 | 7 | 86 | 61 | 140 | 1.02e-15 | 74.7 |
| MS.gene61654.t1 | AT5G60440 | 28.293 | 205 | 119 | 6 | 5 | 200 | 3 | 188 | 2.15e-14 | 71.2 |
| MS.gene61654.t1 | AT1G28460 | 45.455 | 77 | 41 | 1 | 1 | 77 | 1 | 76 | 4.98e-14 | 68.6 |
| MS.gene61654.t1 | AT3G04100 | 37.931 | 87 | 51 | 1 | 2 | 88 | 7 | 90 | 1.34e-12 | 65.1 |
| MS.gene61654.t1 | AT1G01530 | 32.710 | 107 | 68 | 1 | 5 | 107 | 3 | 109 | 1.76e-12 | 65.5 |
| MS.gene61654.t1 | AT1G28450 | 41.250 | 80 | 46 | 1 | 1 | 80 | 1 | 79 | 8.68e-12 | 62.4 |
| MS.gene61654.t1 | AT1G65360 | 43.333 | 60 | 34 | 0 | 9 | 68 | 7 | 66 | 9.59e-12 | 63.2 |
Find 43 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGAGTTAACAACACTTTC+AGG | 0.165743 | 4.1:-46909264 | MS.gene61654:CDS |
| TTGAAGAAGTTGGAAAGTTC+TGG | 0.270990 | 4.1:-46909033 | MS.gene61654:CDS |
| TGCACCAACTTCATGATCTT+TGG | 0.281401 | 4.1:+46908704 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.301989 | 4.1:-46908321 | MS.gene61654:CDS |
| GATGGGTTTCCATAACAAAA+TGG | 0.311638 | 4.1:+46909201 | None:intergenic |
| ATAACCAATGTCTTGAAAAC+TGG | 0.328346 | 4.1:-46908931 | MS.gene61654:CDS |
| ATCATTTCCTCTTCCATTGA+AGG | 0.330256 | 4.1:+46909138 | None:intergenic |
| CTTCTACCATGTCATATATC+TGG | 0.335672 | 4.1:+46908255 | None:intergenic |
| CTTATTGGTGTAAGTGGAAT+AGG | 0.342391 | 4.1:-46908306 | MS.gene61654:CDS |
| CTATTCCACTTACACCAATA+AGG | 0.342684 | 4.1:+46908307 | None:intergenic |
| TTTCTTTCACTTGATCATAT+TGG | 0.353442 | 4.1:+46908989 | None:intergenic |
| AGTTGGAAAGTTCTGGATAT+TGG | 0.382288 | 4.1:-46909026 | MS.gene61654:CDS |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 4.1:-46909228 | MS.gene61654:CDS |
| TTTATTTACGACAGCAACTA+AGG | 0.422183 | 4.1:+46908957 | None:intergenic |
| TTTGTTATAGATTCAGAAGA+TGG | 0.427015 | 4.1:+46909183 | None:intergenic |
| GGAAGAGGAAATGATGAAAC+CGG | 0.442189 | 4.1:-46909130 | MS.gene61654:CDS |
| CCGAGTTAACAACACTTTCA+GGG | 0.450892 | 4.1:-46909263 | MS.gene61654:CDS |
| CCCTGAAAGTGTTGTTAACT+CGG | 0.457016 | 4.1:+46909263 | None:intergenic |
| GGTGTAAGTGGAATAGGATA+TGG | 0.462286 | 4.1:-46908300 | MS.gene61654:CDS |
| GTCAACCTTATTGGTGTAAG+TGG | 0.466219 | 4.1:-46908312 | MS.gene61654:CDS |
| CGTAGCAATTTCTACCATTG+AGG | 0.467584 | 4.1:-46908775 | MS.gene61654:intron |
| GAAGGATGAAAATCCTTCAA+TGG | 0.468568 | 4.1:-46909151 | MS.gene61654:CDS |
| GACTCCATTCAGTTCCTCAA+TGG | 0.472764 | 4.1:+46908761 | None:intergenic |
| TGTTGCATTTACAACGAGAA+AGG | 0.475609 | 4.1:-46909307 | MS.gene61654:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 4.1:-46909229 | MS.gene61654:CDS |
| TGAAAATCCTTCAATGGAAG+AGG | 0.510231 | 4.1:-46909145 | MS.gene61654:CDS |
| TTGTTATAGATTCAGAAGAT+GGG | 0.510327 | 4.1:+46909184 | None:intergenic |
| TCTACCATTGAGGAACTGAA+TGG | 0.512244 | 4.1:-46908765 | MS.gene61654:CDS |
| TTGTCCTCAAAGACAAAAGA+AGG | 0.512656 | 4.1:+46908729 | None:intergenic |
| GCATTTACAACGAGAAAGGC+TGG | 0.523590 | 4.1:-46909303 | MS.gene61654:CDS |
| TTATCCAAAAGGTAAAGGTA+TGG | 0.531949 | 4.1:-46908379 | MS.gene61654:intron |
| GCGCCGAAGAGGTCATCAAA+AGG | 0.555723 | 4.1:-46909378 | MS.gene61654:CDS |
| AACACCAAAGATCATGAAGT+TGG | 0.566706 | 4.1:-46908708 | MS.gene61654:CDS |
| TGGATATTGGTCGATAAAAG+AGG | 0.572226 | 4.1:-46909013 | MS.gene61654:CDS |
| CGAGTTAACAACACTTTCAG+GGG | 0.590811 | 4.1:-46909262 | MS.gene61654:CDS |
| ACCAATGTCTTGAAAACTGG+AGG | 0.591573 | 4.1:-46908928 | MS.gene61654:CDS |
| GAGTAAGAATGGCGCCGAAG+AGG | 0.609055 | 4.1:-46909389 | None:intergenic |
| AGTGGAATAGGATATGGAAG+TGG | 0.614001 | 4.1:-46908294 | MS.gene61654:CDS |
| GGAGGAGAGATTGACCCTCA+TGG | 0.634950 | 4.1:-46908910 | MS.gene61654:intron |
| AAGATGTACACATACCATGA+GGG | 0.689701 | 4.1:+46908896 | None:intergenic |
| TGAAAGTGTTGTTAACTCGG+AGG | 0.701093 | 4.1:+46909266 | None:intergenic |
| AAGCATGAGAATATCAACTG+AGG | 0.718686 | 4.1:+46909239 | None:intergenic |
| AAAGGCTGGAATTTACAACA+AGG | 0.729615 | 4.1:-46909289 | MS.gene61654:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTGAATCAATGAA+AGG | + | chr4.1:46909249-46909268 | None:intergenic | 15.0% |
| !! | CAATACATAATATATATGTT+AGG | + | chr4.1:46909221-46909240 | None:intergenic | 15.0% |
| !! | CTTAAAATAATTAGGTAAAA+AGG | + | chr4.1:46908832-46908851 | None:intergenic | 15.0% |
| !!! | TTCAATTTTTTTTATCCAAA+AGG | - | chr4.1:46909257-46909276 | MS.gene61654:CDS | 15.0% |
| !! | CAGATTCACTTAAAATAATT+AGG | + | chr4.1:46908840-46908859 | None:intergenic | 20.0% |
| !! | GTTGAAAAAAATTGAGAAAA+AGG | - | chr4.1:46908307-46908326 | MS.gene61654:CDS | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | - | chr4.1:46908838-46908857 | MS.gene61654:intron | 20.0% |
| !!! | TATAACAAAAACTAGTTTGA+AGG | - | chr4.1:46908478-46908497 | MS.gene61654:intron | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | - | chr4.1:46908556-46908575 | MS.gene61654:intron | 20.0% |
| !!! | TTTTTTTATCCAAAAGGTAA+AGG | - | chr4.1:46909263-46909282 | MS.gene61654:CDS | 20.0% |
| ! | ACGTAAAAATTTGAAGAAGT+TGG | - | chr4.1:46908604-46908623 | MS.gene61654:intron | 25.0% |
| ! | ATAGCTACAAAAAAAACACA+AGG | - | chr4.1:46909311-46909330 | MS.gene61654:CDS | 25.0% |
| ! | TCTTCTTAATTTCCATTACT+AGG | - | chr4.1:46909158-46909177 | MS.gene61654:CDS | 25.0% |
| ! | TTGTTATAGATTCAGAAGAT+GGG | + | chr4.1:46908466-46908485 | None:intergenic | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | + | chr4.1:46908661-46908680 | None:intergenic | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr4.1:46908467-46908486 | None:intergenic | 25.0% |
| !! | TTTTTCATGAAATATCCTAG+CGG | - | chr4.1:46909005-46909024 | MS.gene61654:CDS | 25.0% |
| AATGACGTCAAATGATTTCA+TGG | - | chr4.1:46908803-46908822 | MS.gene61654:intron | 30.0% | |
| ATAACCAATGTCTTGAAAAC+TGG | - | chr4.1:46908716-46908735 | MS.gene61654:CDS | 30.0% | |
| CTAGAGATATTTGATGTGTT+GGG | + | chr4.1:46909086-46909105 | None:intergenic | 30.0% | |
| TCTAGAGATATTTGATGTGT+TGG | + | chr4.1:46909087-46909106 | None:intergenic | 30.0% | |
| TTATCCAAAAGGTAAAGGTA+TGG | - | chr4.1:46909268-46909287 | MS.gene61654:CDS | 30.0% | |
| TTTATTTACGACAGCAACTA+AGG | + | chr4.1:46908693-46908712 | None:intergenic | 30.0% | |
| ! | AAATCCTTCTTTTGTCTTTG+AGG | - | chr4.1:46908914-46908933 | MS.gene61654:CDS | 30.0% |
| ! | TCATTTTGCTCTATAATCTC+CGG | + | chr4.1:46908539-46908558 | None:intergenic | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | - | chr4.1:46908574-46908593 | MS.gene61654:intron | 30.0% |
| ! | TTTTGTAGCTATATCTTGAG+AGG | + | chr4.1:46909303-46909322 | None:intergenic | 30.0% |
| !! | ACCATTTAAGTTGCACTTAT+GGG | - | chr4.1:46909117-46909136 | MS.gene61654:CDS | 30.0% |
| !! | TACCATTTAAGTTGCACTTA+TGG | - | chr4.1:46909116-46909135 | MS.gene61654:CDS | 30.0% |
| AAAGGCTGGAATTTACAACA+AGG | - | chr4.1:46908358-46908377 | MS.gene61654:CDS | 35.0% | |
| AACACCAAAGATCATGAAGT+TGG | - | chr4.1:46908939-46908958 | MS.gene61654:CDS | 35.0% | |
| AAGATGTACACATACCATGA+GGG | + | chr4.1:46908754-46908773 | None:intergenic | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr4.1:46908411-46908430 | None:intergenic | 35.0% | |
| AATGTTTGCATGCCTAGTAA+TGG | + | chr4.1:46909173-46909192 | None:intergenic | 35.0% | |
| ATCATTTCCTCTTCCATTGA+AGG | + | chr4.1:46908512-46908531 | None:intergenic | 35.0% | |
| CTATTCCACTTACACCAATA+AGG | + | chr4.1:46909343-46909362 | None:intergenic | 35.0% | |
| CTTATTGGTGTAAGTGGAAT+AGG | - | chr4.1:46909341-46909360 | MS.gene61654:CDS | 35.0% | |
| GAAGGATGAAAATCCTTCAA+TGG | - | chr4.1:46908496-46908515 | MS.gene61654:intron | 35.0% | |
| TAGACAAGATCAGATGTTGT+TGG | - | chr4.1:46909050-46909069 | MS.gene61654:CDS | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr4.1:46908418-46908437 | MS.gene61654:intron | 35.0% | |
| TCCCATAAGTGCAACTTAAA+TGG | + | chr4.1:46909121-46909140 | None:intergenic | 35.0% | |
| TGAAAATCCTTCAATGGAAG+AGG | - | chr4.1:46908502-46908521 | MS.gene61654:intron | 35.0% | |
| TGGATATTGGTCGATAAAAG+AGG | - | chr4.1:46908634-46908653 | MS.gene61654:intron | 35.0% | |
| TGTTGCATTTACAACGAGAA+AGG | - | chr4.1:46908340-46908359 | MS.gene61654:CDS | 35.0% | |
| TTGAAGAAGTTGGAAAGTTC+TGG | - | chr4.1:46908614-46908633 | MS.gene61654:intron | 35.0% | |
| TTGTCCTCAAAGACAAAAGA+AGG | + | chr4.1:46908921-46908940 | None:intergenic | 35.0% | |
| ! | ACGGGAAAACCATTTTGTTA+TGG | - | chr4.1:46908437-46908456 | MS.gene61654:intron | 35.0% |
| ! | GATGGGTTTCCATAACAAAA+TGG | + | chr4.1:46908449-46908468 | None:intergenic | 35.0% |
| ! | TAACAAAATGGTTTTCCCGT+TGG | + | chr4.1:46908437-46908456 | None:intergenic | 35.0% |
| !! | AGTTGGAAAGTTCTGGATAT+TGG | - | chr4.1:46908621-46908640 | MS.gene61654:intron | 35.0% |
| !! | TTTCCTTTTGATGACCTCTT+CGG | + | chr4.1:46908275-46908294 | None:intergenic | 35.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr4.1:46909326-46909345 | MS.gene61654:CDS | 40.0% | |
| ACCAATGTCTTGAAAACTGG+AGG | - | chr4.1:46908719-46908738 | MS.gene61654:CDS | 40.0% | |
| AGTGGAATAGGATATGGAAG+TGG | - | chr4.1:46909353-46909372 | MS.gene61654:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr4.1:46908419-46908438 | MS.gene61654:intron | 40.0% | |
| CAAGATGTACACATACCATG+AGG | + | chr4.1:46908755-46908774 | None:intergenic | 40.0% | |
| CCGAGTTAACAACACTTTCA+GGG | - | chr4.1:46908384-46908403 | MS.gene61654:intron | 40.0% | |
| CGAGTTAACAACACTTTCAG+GGG | - | chr4.1:46908385-46908404 | MS.gene61654:intron | 40.0% | |
| CGTAGCAATTTCTACCATTG+AGG | - | chr4.1:46908872-46908891 | MS.gene61654:intron | 40.0% | |
| GGAAGAGGAAATGATGAAAC+CGG | - | chr4.1:46908517-46908536 | MS.gene61654:intron | 40.0% | |
| GGTGTAAGTGGAATAGGATA+TGG | - | chr4.1:46909347-46909366 | MS.gene61654:CDS | 40.0% | |
| GTCAACCTTATTGGTGTAAG+TGG | - | chr4.1:46909335-46909354 | MS.gene61654:CDS | 40.0% | |
| TCCGAGTTAACAACACTTTC+AGG | - | chr4.1:46908383-46908402 | MS.gene61654:intron | 40.0% | |
| TCTACCATTGAGGAACTGAA+TGG | - | chr4.1:46908882-46908901 | MS.gene61654:intron | 40.0% | |
| TGCACCAACTTCATGATCTT+TGG | + | chr4.1:46908946-46908965 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | + | chr4.1:46909275-46909294 | None:intergenic | 40.0% |
| !! | CCCTGAAAGTGTTGTTAACT+CGG | + | chr4.1:46908387-46908406 | None:intergenic | 40.0% |
| !! | TCCTCCAGTTTTCAAGACAT+TGG | + | chr4.1:46908723-46908742 | None:intergenic | 40.0% |
| !! | TGAAAGTGTTGTTAACTCGG+AGG | + | chr4.1:46908384-46908403 | None:intergenic | 40.0% |
| GACTCCATTCAGTTCCTCAA+TGG | + | chr4.1:46908889-46908908 | None:intergenic | 45.0% | |
| GCATTTACAACGAGAAAGGC+TGG | - | chr4.1:46908344-46908363 | MS.gene61654:CDS | 45.0% | |
| ! | AATGTGTGAGTGTTGCCGCT+AGG | + | chr4.1:46909023-46909042 | None:intergenic | 50.0% |
| GCGCCGAAGAGGTCATCAAA+AGG | - | chr4.1:46908269-46908288 | MS.gene61654:CDS | 55.0% | |
| GGAGGAGAGATTGACCCTCA+TGG | - | chr4.1:46908737-46908756 | MS.gene61654:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 46908266 | 46909403 | 46908266 | ID=MS.gene61654 |
| chr4.1 | mRNA | 46908266 | 46909403 | 46908266 | ID=MS.gene61654.t1;Parent=MS.gene61654 |
| chr4.1 | exon | 46908911 | 46909403 | 46908911 | ID=MS.gene61654.t1.exon1;Parent=MS.gene61654.t1 |
| chr4.1 | CDS | 46908911 | 46909403 | 46908911 | ID=cds.MS.gene61654.t1;Parent=MS.gene61654.t1 |
| chr4.1 | exon | 46908703 | 46908792 | 46908703 | ID=MS.gene61654.t1.exon2;Parent=MS.gene61654.t1 |
| chr4.1 | CDS | 46908703 | 46908792 | 46908703 | ID=cds.MS.gene61654.t1;Parent=MS.gene61654.t1 |
| chr4.1 | exon | 46908266 | 46908390 | 46908266 | ID=MS.gene61654.t1.exon3;Parent=MS.gene61654.t1 |
| chr4.1 | CDS | 46908266 | 46908390 | 46908266 | ID=cds.MS.gene61654.t1;Parent=MS.gene61654.t1 |
| Gene Sequence |
| Protein sequence |
