AlfalfaGEDB | MS.gene61733

M. sativa cultivar XinJiangDaYe / MS.gene61733

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61733.t1	XP_003610140.2	97.6	126	3	0	3	128	44	169	1.90E-61	245

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61733.t1	Q39261	46.5	127	44	5	2	128	48	150	2.6e-14	79.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61733.t1	G7JVH8	97.6	126	3	0	3	128	44	169	1.4e-61	245.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene61733.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61733.t1	MTR_4g128340	97.656	128	3	0	1	128	42	169	1.26e-90	259
MS.gene61733.t1	MTR_2g104900	35.632	174	62	6	1	128	78	247	1.46e-18	78.6
MS.gene61733.t1	MTR_1g033340	35.443	158	66	6	4	128	97	251	2.70e-18	77.8
MS.gene61733.t1	MTR_5g077370	67.273	55	15	1	4	55	87	141	7.45e-18	76.6
MS.gene61733.t1	MTR_3g065020	64.286	56	19	1	3	58	85	139	4.77e-17	74.3
MS.gene61733.t1	MTR_4g006575	67.347	49	14	1	1	47	64	112	1.33e-16	73.2
MS.gene61733.t1	MTR_4g006600	67.347	49	14	1	1	47	64	112	1.33e-16	73.2
MS.gene61733.t1	MTR_1g013130	64.583	48	17	0	1	48	91	138	2.30e-16	73.2
MS.gene61733.t1	MTR_3g106230	73.684	38	10	0	2	39	70	107	8.16e-15	68.2
MS.gene61733.t1	MTR_7g086860	74.286	35	9	0	4	38	30	64	4.09e-13	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61733.t1	AT5G57520	47.287	129	43	6	1	128	46	150	1.89e-22	86.7
MS.gene61733.t1	AT5G10970	45.714	105	46	4	2	106	100	193	2.14e-19	81.3
MS.gene61733.t1	AT5G25160	54.545	88	25	5	2	85	57	133	9.75e-19	79.0
MS.gene61733.t1	AT1G66140	75.000	44	11	0	1	44	80	123	2.20e-17	75.9
MS.gene61733.t1	AT1G80730	54.054	74	30	1	2	71	64	137	4.82e-17	74.3
MS.gene61733.t1	AT1G24625	78.947	38	8	0	4	41	57	94	3.54e-16	71.6
MS.gene61733.t1	AT5G14010	31.783	129	81	2	4	128	36	161	5.43e-13	62.4
MS.gene61733.t1	AT5G01860	53.061	49	19	1	4	52	65	109	2.92e-12	61.2

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Find 32 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTCACAAGCTTGAA+AGG	0.509103	8.1:-4621467	MS.gene61733:CDS
AAGGTGTGGCTTCTTGGTCA+AGG	0.476344	8.1:-4621245	MS.gene61733:CDS
AATTACCATCTTGGAAGTCA+TGG	0.516260	8.1:-4621357	MS.gene61733:CDS
AATTAGTAGAGAAGTTTGAA+GGG	0.551396	8.1:+4621376	None:intergenic
AGAAAAGATCAGTTTAGTTA+TGG	0.369153	8.1:-4621279	MS.gene61733:CDS
AGCATAAGAAGATTGCATGG+CGG	0.769594	8.1:+4621413	None:intergenic
AGGTGTGGCTTCTTGGTCAA+GGG	0.430940	8.1:-4621244	MS.gene61733:CDS
AGTTATGGAAATTCTAAGGA+AGG	0.495820	8.1:-4621264	MS.gene61733:CDS
ATAGACAAGGTCATGTGATG+AGG	0.622400	8.1:-4621311	MS.gene61733:CDS
CAAGGTCATGTGATGAGGCA+TGG	0.652675	8.1:-4621306	MS.gene61733:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCTACTAATTACCATCT+TGG	-	chr8.1:4621350-4621369	MS.gene61733:CDS	30.0%
AAAATGCTCACAAGCTTGAA+AGG	-	chr8.1:4621249-4621268	MS.gene61733:CDS	35.0%
AATTACCATCTTGGAAGTCA+TGG	-	chr8.1:4621359-4621378	MS.gene61733:CDS	35.0%
TTCAGCATAAGAAGATTGCA+TGG	+	chr8.1:4621309-4621328	None:intergenic	35.0%
AGCATAAGAAGATTGCATGG+CGG	+	chr8.1:4621306-4621325	None:intergenic	40.0%
ATAGACAAGGTCATGTGATG+AGG	-	chr8.1:4621405-4621424	MS.gene61733:CDS	40.0%
CATTTCCATGACTTCCAAGA+TGG	+	chr8.1:4621367-4621386	None:intergenic	40.0%
CTTGACAACAACCATAGACA+AGG	-	chr8.1:4621392-4621411	MS.gene61733:CDS	40.0%
GACACTTGCAAAGAAGAGTA+GGG	-	chr8.1:4621271-4621290	MS.gene61733:CDS	40.0%
GCCTTAAGGACAAATCAAGT+TGG	+	chr8.1:4621538-4621557	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	4621176	4621562	4621176	ID=MS.gene61733
chr8.1	mRNA	4621176	4621562	4621176	ID=MS.gene61733.t1;Parent=MS.gene61733
chr8.1	exon	4621176	4621562	4621176	ID=MS.gene61733.t1.exon1;Parent=MS.gene61733.t1
chr8.1	CDS	4621176	4621562	4621176	ID=cds.MS.gene61733.t1;Parent=MS.gene61733.t1

Gene Sequence

>MS.gene61733

ATGGAGCAAAGGATATTCTCATGCAATTATTGTCAGAGAAAGTTTTATAGCTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAGCTTGAAAGGACACTTGCAAAGAAGAGTAGGGAGATGAGTTCCGCCATGCAATCTTCTTATGCTGAATTACCAGAACACCCTTCAAACTTCTCTACTAATTACCATCTTGGAAGTCATGGAAATGCTCATCTTGACAACAACCATAGACAAGGTCATGTGATGAGGCATGGTGGAAGAAAAGATCAGTTTAGTTATGGAAATTCTAAGGAAGGTGTGGCTTCTTGGTCAAGGGGTTATAATAGTACTTCTGAAAATGTTCAGGAGGATATTAGCCAACTTGATTTGTCCTTAAGGCTCTGA

Protein sequence

>MS.gene61733.t1

MEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSAMQSSYAELPEHPSNFSTNYHLGSHGNAHLDNNHRQGHVMRHGGRKDQFSYGNSKEGVASWSRGYNSTSENVQEDISQLDLSLRL